Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55396.t1 | XP_003614041.2 | 99.1 | 347 | 3 | 0 | 1 | 347 | 1 | 347 | 9.20E-191 | 676 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55396.t1 | Q99MB4 | 38.8 | 353 | 202 | 5 | 2 | 347 | 13 | 358 | 2.5e-64 | 247.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55396.t1 | G7JWS4 | 99.1 | 347 | 3 | 0 | 1 | 347 | 1 | 347 | 6.6e-191 | 676.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049159 | MS.gene55396 | 0.859709 | 3.43E-63 | -1.69E-46 |
| MS.gene049756 | MS.gene55396 | 0.820059 | 8.38E-53 | -1.69E-46 |
| MS.gene050105 | MS.gene55396 | 0.801093 | 1.06E-48 | -1.69E-46 |
| MS.gene050303 | MS.gene55396 | 0.804772 | 1.84E-49 | -1.69E-46 |
| MS.gene050442 | MS.gene55396 | 0.823762 | 1.16E-53 | -1.69E-46 |
| MS.gene050605 | MS.gene55396 | 0.839621 | 1.42E-57 | -1.69E-46 |
| MS.gene050623 | MS.gene55396 | -0.815563 | 8.67E-52 | -1.69E-46 |
| MS.gene051243 | MS.gene55396 | 0.816718 | 4.79E-52 | -1.69E-46 |
| MS.gene05134 | MS.gene55396 | 0.80932 | 2.01E-50 | -1.69E-46 |
| MS.gene051368 | MS.gene55396 | 0.818018 | 2.44E-52 | -1.69E-46 |
| MS.gene051452 | MS.gene55396 | 0.817929 | 2.56E-52 | -1.69E-46 |
| MS.gene051535 | MS.gene55396 | 0.813087 | 3.06E-51 | -1.69E-46 |
| MS.gene051975 | MS.gene55396 | 0.808764 | 2.64E-50 | -1.69E-46 |
| MS.gene052012 | MS.gene55396 | 0.831712 | 1.43E-55 | -1.69E-46 |
| MS.gene05215 | MS.gene55396 | 0.816428 | 5.56E-52 | -1.69E-46 |
| MS.gene052286 | MS.gene55396 | 0.811092 | 8.32E-51 | -1.69E-46 |
| MS.gene052426 | MS.gene55396 | 0.848306 | 6.67E-60 | -1.69E-46 |
| MS.gene052500 | MS.gene55396 | 0.804815 | 1.80E-49 | -1.69E-46 |
| MS.gene052502 | MS.gene55396 | 0.802985 | 4.33E-49 | -1.69E-46 |
| MS.gene052826 | MS.gene55396 | 0.803265 | 3.79E-49 | -1.69E-46 |
| MS.gene052954 | MS.gene55396 | 0.815659 | 8.25E-52 | -1.69E-46 |
| MS.gene053006 | MS.gene55396 | 0.804163 | 2.47E-49 | -1.69E-46 |
| MS.gene053008 | MS.gene55396 | 0.834478 | 2.93E-56 | -1.69E-46 |
| MS.gene053058 | MS.gene55396 | 0.802418 | 5.66E-49 | -1.69E-46 |
| MS.gene053080 | MS.gene55396 | 0.829153 | 6.03E-55 | -1.69E-46 |
| MS.gene053216 | MS.gene55396 | 0.804427 | 2.17E-49 | -1.69E-46 |
| MS.gene053226 | MS.gene55396 | 0.808892 | 2.48E-50 | -1.69E-46 |
| MS.gene05364 | MS.gene55396 | 0.801051 | 1.08E-48 | -1.69E-46 |
| MS.gene053931 | MS.gene55396 | 0.815938 | 7.15E-52 | -1.69E-46 |
| MS.gene054479 | MS.gene55396 | 0.802281 | 6.04E-49 | -1.69E-46 |
| MS.gene054657 | MS.gene55396 | 0.881607 | 2.08E-70 | -1.69E-46 |
| MS.gene054658 | MS.gene55396 | 0.863615 | 2.19E-64 | -1.69E-46 |
| MS.gene054994 | MS.gene55396 | 0.803486 | 3.41E-49 | -1.69E-46 |
| MS.gene05510 | MS.gene55396 | 0.860647 | 1.79E-63 | -1.69E-46 |
| MS.gene05517 | MS.gene55396 | 0.836523 | 8.90E-57 | -1.69E-46 |
| MS.gene055222 | MS.gene55396 | 0.819995 | 8.66E-53 | -1.69E-46 |
| MS.gene055441 | MS.gene55396 | 0.810318 | 1.22E-50 | -1.69E-46 |
| MS.gene055512 | MS.gene55396 | 0.809913 | 1.50E-50 | -1.69E-46 |
| MS.gene055623 | MS.gene55396 | 0.859165 | 4.99E-63 | -1.69E-46 |
| MS.gene055701 | MS.gene55396 | 0.832793 | 7.72E-56 | -1.69E-46 |
| MS.gene056506 | MS.gene55396 | 0.814742 | 1.32E-51 | -1.69E-46 |
| MS.gene056552 | MS.gene55396 | 0.837943 | 3.86E-57 | -1.69E-46 |
| MS.gene056760 | MS.gene55396 | 0.809114 | 2.22E-50 | -1.69E-46 |
| MS.gene057140 | MS.gene55396 | 0.822115 | 2.82E-53 | -1.69E-46 |
| MS.gene057208 | MS.gene55396 | 0.81127 | 7.61E-51 | -1.69E-46 |
| MS.gene057360 | MS.gene55396 | 0.811039 | 8.54E-51 | -1.69E-46 |
| MS.gene057693 | MS.gene55396 | 0.833538 | 5.04E-56 | -1.69E-46 |
| MS.gene057869 | MS.gene55396 | 0.818909 | 1.53E-52 | -1.69E-46 |
| MS.gene05795 | MS.gene55396 | 0.818826 | 1.60E-52 | -1.69E-46 |
| MS.gene058126 | MS.gene55396 | 0.815424 | 9.31E-52 | -1.69E-46 |
| MS.gene058146 | MS.gene55396 | 0.819329 | 1.23E-52 | -1.69E-46 |
| MS.gene058435 | MS.gene55396 | 0.80684 | 6.76E-50 | -1.69E-46 |
| MS.gene058548 | MS.gene55396 | 0.82812 | 1.07E-54 | -1.69E-46 |
| MS.gene058549 | MS.gene55396 | 0.810362 | 1.20E-50 | -1.69E-46 |
| MS.gene058595 | MS.gene55396 | 0.854899 | 9.05E-62 | -1.69E-46 |
| MS.gene059249 | MS.gene55396 | 0.821778 | 3.37E-53 | -1.69E-46 |
| MS.gene059317 | MS.gene55396 | 0.833576 | 4.93E-56 | -1.69E-46 |
| MS.gene05978 | MS.gene55396 | 0.816192 | 6.28E-52 | -1.69E-46 |
| MS.gene05979 | MS.gene55396 | 0.815652 | 8.28E-52 | -1.69E-46 |
| MS.gene059830 | MS.gene55396 | 0.840903 | 6.57E-58 | -1.69E-46 |
| MS.gene059842 | MS.gene55396 | 0.827197 | 1.79E-54 | -1.69E-46 |
| MS.gene06010 | MS.gene55396 | 0.807413 | 5.12E-50 | -1.69E-46 |
| MS.gene060296 | MS.gene55396 | 0.826929 | 2.07E-54 | -1.69E-46 |
| MS.gene060297 | MS.gene55396 | 0.803564 | 3.28E-49 | -1.69E-46 |
| MS.gene060310 | MS.gene55396 | 0.803287 | 3.75E-49 | -1.69E-46 |
| MS.gene060322 | MS.gene55396 | 0.805681 | 1.19E-49 | -1.69E-46 |
| MS.gene060365 | MS.gene55396 | 0.807578 | 4.72E-50 | -1.69E-46 |
| MS.gene060586 | MS.gene55396 | 0.82555 | 4.41E-54 | -1.69E-46 |
| MS.gene060683 | MS.gene55396 | 0.851353 | 9.38E-61 | -1.69E-46 |
| MS.gene060685 | MS.gene55396 | 0.84974 | 2.66E-60 | -1.69E-46 |
| MS.gene060802 | MS.gene55396 | 0.819798 | 9.61E-53 | -1.69E-46 |
| MS.gene060803 | MS.gene55396 | 0.836944 | 6.95E-57 | -1.69E-46 |
| MS.gene060998 | MS.gene55396 | 0.838891 | 2.20E-57 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene90838 | MS.gene55396 | PPI |
| MS.gene55396 | MS.gene066450 | PPI |
| MS.gene029104 | MS.gene55396 | PPI |
| MS.gene75176 | MS.gene55396 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55396.t1 | MTR_5g044050 | 99.135 | 347 | 3 | 0 | 1 | 347 | 1 | 347 | 0.0 | 701 |
| MS.gene55396.t1 | MTR_8g071110 | 38.824 | 340 | 187 | 7 | 22 | 347 | 57 | 389 | 4.18e-67 | 217 |
| MS.gene55396.t1 | MTR_1g115505 | 36.111 | 360 | 183 | 7 | 24 | 347 | 83 | 431 | 2.77e-65 | 213 |
| MS.gene55396.t1 | MTR_5g021440 | 89.583 | 48 | 4 | 1 | 1 | 48 | 1 | 47 | 1.89e-21 | 87.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55396.t1 | AT1G26520 | 73.775 | 347 | 85 | 2 | 4 | 347 | 13 | 356 | 0.0 | 527 |
| MS.gene55396.t1 | AT1G15730 | 38.202 | 356 | 177 | 7 | 24 | 347 | 86 | 430 | 8.07e-72 | 230 |
| MS.gene55396.t1 | AT1G80480 | 36.785 | 367 | 190 | 7 | 12 | 347 | 71 | 426 | 5.47e-69 | 223 |
Find 69 sgRNAs with CRISPR-Local
Find 342 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACCTTTGGCATCTATTCTT+TGG | 0.207860 | 5.3:+31862275 | MS.gene55396:CDS |
| AATGAGTTTGGTGAGGAAAT+TGG | 0.300166 | 5.3:+31861598 | MS.gene55396:CDS |
| CTACGAGTGTGTTAATGTTA+TGG | 0.302882 | 5.3:-31863251 | None:intergenic |
| TCAGCATGCCGCACATTTAG+AGG | 0.314137 | 5.3:+31863429 | MS.gene55396:intron |
| TATGGCTAGAGGAGATTCTT+TGG | 0.317773 | 5.3:+31863939 | MS.gene55396:CDS |
| TGATGAATTGCATACTTTGC+AGG | 0.320221 | 5.3:+31864021 | MS.gene55396:CDS |
| ATGAATAAGATAGTATTTAT+AGG | 0.327529 | 5.3:+31866438 | MS.gene55396:CDS |
| AATTCTTAACAAGGTTGATT+TGG | 0.330079 | 5.3:+31863182 | MS.gene55396:CDS |
| TTGGGAGAAGAAATATGATA+TGG | 0.330619 | 5.3:+31863958 | MS.gene55396:CDS |
| AACAGAAGATTGTTGAGAAA+TGG | 0.344084 | 5.3:-31860777 | None:intergenic |
| GCTGTGATATTGAATGAGTT+TGG | 0.371555 | 5.3:+31861586 | MS.gene55396:CDS |
| GCTATCTGAAAATATGCTTC+AGG | 0.372809 | 5.3:-31862794 | None:intergenic |
| TTGCACTGTTAAGCATAGTT+TGG | 0.374329 | 5.3:+31861702 | MS.gene55396:CDS |
| TGTGGCTAATCCAGCACCTT+TGG | 0.381484 | 5.3:+31862261 | MS.gene55396:CDS |
| ACTCTCATCACTGGTTATCT+TGG | 0.383465 | 5.3:+31860806 | MS.gene55396:CDS |
| AACCATGGCAGACTCGTATA+TGG | 0.384207 | 5.3:+31863921 | MS.gene55396:intron |
| TTTGGCATCTATTCTTTGGT+TGG | 0.414831 | 5.3:+31862279 | MS.gene55396:CDS |
| TTCTCTGCACAAGCTGCTCA+AGG | 0.418476 | 5.3:-31861732 | None:intergenic |
| TAGGCTAGACCATATATTGC+TGG | 0.419326 | 5.3:+31862228 | MS.gene55396:intron |
| AGAATAGATGCCAAAGGTGC+TGG | 0.420889 | 5.3:-31862271 | None:intergenic |
| TTGGTATCTGCAGAAGGCTC+TGG | 0.429405 | 5.3:+31863201 | MS.gene55396:CDS |
| CAGTAGTTTCCAGCAATATA+TGG | 0.431248 | 5.3:-31862237 | None:intergenic |
| ATGGCTAGAGGAGATTCTTT+GGG | 0.440901 | 5.3:+31863940 | MS.gene55396:CDS |
| AGTGGAAGAAAGAAGAAAAC+AGG | 0.446364 | 5.3:+31866415 | MS.gene55396:CDS |
| TCCAGTCTCACTGATGCATA+TGG | 0.458810 | 5.3:-31863512 | None:intergenic |
| ATCACTGGTTATCTTGGTGC+TGG | 0.459836 | 5.3:+31860812 | MS.gene55396:CDS |
| GAAAGAGCATTGATAAATGA+AGG | 0.462576 | 5.3:+31861625 | MS.gene55396:CDS |
| TCTTTCTTCCACTTCCGAGC+AGG | 0.475644 | 5.3:-31866405 | None:intergenic |
| AGCCACGGTGCTCCTTGAGC+TGG | 0.477134 | 5.3:-31862760 | None:intergenic |
| GTGGTGCAGTTGTTGAAGAA+TGG | 0.477782 | 5.3:+31861653 | MS.gene55396:CDS |
| TCTTTGGTTGGATGAACAGT+TGG | 0.479469 | 5.3:+31862291 | MS.gene55396:CDS |
| GTTGGTGTCACTCTCATCAC+TGG | 0.482192 | 5.3:+31860797 | MS.gene55396:CDS |
| TGGTGCAGTTGTTGAAGAAT+GGG | 0.484968 | 5.3:+31861654 | MS.gene55396:CDS |
| AGATTGTTCCTGCTCGGAAG+TGG | 0.491918 | 5.3:+31866397 | MS.gene55396:CDS |
| GAATGGGTTGAACTTGCTAA+TGG | 0.500533 | 5.3:+31861670 | MS.gene55396:CDS |
| ATTTCTCAACAATCTTCTGT+TGG | 0.503553 | 5.3:+31860779 | MS.gene55396:CDS |
| ACCATATGCATCAGTGAGAC+TGG | 0.507489 | 5.3:+31863511 | MS.gene55396:CDS |
| CATATATTGCTGGAAACTAC+TGG | 0.512907 | 5.3:+31862238 | MS.gene55396:CDS |
| TGGAACAGTTGATCTTGATA+AGG | 0.538502 | 5.3:+31863531 | MS.gene55396:CDS |
| TCTCTGCACAAGCTGCTCAA+GGG | 0.549355 | 5.3:-31861731 | None:intergenic |
| TGAACTCTCAACATGGGAAG+AGG | 0.549391 | 5.3:+31861560 | MS.gene55396:CDS |
| AAATGTTCGCTTCCAGCTCA+AGG | 0.553773 | 5.3:+31862748 | MS.gene55396:CDS |
| TTGATAAATGAAGGGGAAAG+TGG | 0.553774 | 5.3:+31861634 | MS.gene55396:CDS |
| CATATATTGAACTCTCAACA+TGG | 0.555523 | 5.3:+31861553 | MS.gene55396:CDS |
| AGAAGGCTCTGGAGCTCTAG+AGG | 0.581340 | 5.3:+31863212 | MS.gene55396:CDS |
| CATTTAAGACTCCTTTGCAA+CGG | 0.583923 | 5.3:-31863988 | None:intergenic |
| GTTGATTTGGTATCTGCAGA+AGG | 0.585096 | 5.3:+31863195 | MS.gene55396:CDS |
| AAAGAGCATTGATAAATGAA+GGG | 0.594588 | 5.3:+31861626 | MS.gene55396:CDS |
| GGACATTGTAATTCTTAACA+AGG | 0.607377 | 5.3:+31863173 | MS.gene55396:intron |
| AAGAGCATTGATAAATGAAG+GGG | 0.611247 | 5.3:+31861627 | MS.gene55396:CDS |
| TATACGAGATTGTTCCTGCT+CGG | 0.613095 | 5.3:+31866391 | MS.gene55396:CDS |
| ATGGATGTATACCGTTGCAA+AGG | 0.617207 | 5.3:+31863977 | MS.gene55396:CDS |
| TCTTGGTGCTGGCAAATCCA+CGG | 0.620578 | 5.3:+31860823 | MS.gene55396:CDS |
| CTGCAGTATCGTAAGCGTGG+CGG | 0.624449 | 5.3:-31863323 | None:intergenic |
| ATATATTGAACTCTCAACAT+GGG | 0.629606 | 5.3:+31861554 | MS.gene55396:CDS |
| TGTTGAATCTCAACAGCAAG+AGG | 0.636495 | 5.3:-31860737 | None:intergenic |
| TGAATCTCAACAGCAAGAGG+TGG | 0.637466 | 5.3:-31860734 | None:intergenic |
| GCAGACTCGTATATGGCTAG+AGG | 0.641181 | 5.3:+31863928 | MS.gene55396:intron |
| TAACAATGCCTCTAAATGTG+CGG | 0.644611 | 5.3:-31863437 | None:intergenic |
| AGCTTGTGCAGAGAAAAGAA+AGG | 0.645456 | 5.3:+31861740 | MS.gene55396:CDS |
| CAGGAAATGAAGATGAGCCA+CGG | 0.651825 | 5.3:-31862775 | None:intergenic |
| GTTTGGTGAGGAAATTGGAG+TGG | 0.654078 | 5.3:+31861603 | MS.gene55396:CDS |
| AGCTCTAGAGGAACTCGAGG+AGG | 0.659807 | 5.3:+31863224 | MS.gene55396:CDS |
| AACCAAAGAATAGATGCCAA+AGG | 0.660580 | 5.3:-31862277 | None:intergenic |
| TTACTGCAGTATCGTAAGCG+TGG | 0.673945 | 5.3:-31863326 | None:intergenic |
| TGGAGCTCTAGAGGAACTCG+AGG | 0.681621 | 5.3:+31863221 | MS.gene55396:CDS |
| ATTGCTGGAAACTACTGGTG+TGG | 0.682013 | 5.3:+31862243 | MS.gene55396:CDS |
| GATATTGAATGAGTTTGGTG+AGG | 0.685395 | 5.3:+31861591 | MS.gene55396:CDS |
| TTCCAGCTCAAGGAGCACCG+TGG | 0.718846 | 5.3:+31862758 | MS.gene55396:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAAAAAAATCTTAC+AGG | + | chr5.3:31861381-31861400 | MS.gene55396:intron | 10.0% |
| !! | AAAAAAAAAAAAATCTTACA+GGG | + | chr5.3:31861382-31861401 | MS.gene55396:intron | 10.0% |
| !! | ATTAAAACTCAAATATTATA+CGG | - | chr5.3:31866326-31866345 | None:intergenic | 10.0% |
| !! | ATTTAAATAAATTACTTATC+TGG | + | chr5.3:31862426-31862445 | MS.gene55396:intron | 10.0% |
| !! | TTTAAATAAATTACTTATCT+GGG | + | chr5.3:31862427-31862446 | MS.gene55396:intron | 10.0% |
| !!! | ATTAAAAAAACAGAATTTTA+AGG | - | chr5.3:31865294-31865313 | None:intergenic | 10.0% |
| !!! | TTAATTTTTAAATCACTTAT+CGG | + | chr5.3:31866341-31866360 | MS.gene55396:intron | 10.0% |
| !! | ATGAATAAGATAGTATTTAT+AGG | + | chr5.3:31866438-31866457 | MS.gene55396:CDS | 15.0% |
| !! | TAAATCATTTGATTGATATT+TGG | + | chr5.3:31866085-31866104 | MS.gene55396:intron | 15.0% |
| !! | TATTTAGTGTACTATTTATA+AGG | + | chr5.3:31864147-31864166 | MS.gene55396:intron | 15.0% |
| !! | TATTTATAAGAGATTCAAAA+GGG | - | chr5.3:31862141-31862160 | None:intergenic | 15.0% |
| !! | TGAGATGTATATAAAAATAT+TGG | + | chr5.3:31865065-31865084 | MS.gene55396:intron | 15.0% |
| !! | TTATATACATAAGCAATAAT+AGG | - | chr5.3:31861889-31861908 | None:intergenic | 15.0% |
| !! | TTTACTTATATATTTCGAAA+AGG | + | chr5.3:31866014-31866033 | MS.gene55396:intron | 15.0% |
| !!! | AAGTATTTTTTAATTGGATT+TGG | + | chr5.3:31861072-31861091 | MS.gene55396:intron | 15.0% |
| !!! | AATTAATTCATTTGTTGTTT+GGG | + | chr5.3:31864266-31864285 | MS.gene55396:intron | 15.0% |
| !!! | TAGTACAATTAAACATTTTT+AGG | + | chr5.3:31862192-31862211 | MS.gene55396:intron | 15.0% |
| !!! | TCATTTTCTTTTTTGTTATT+GGG | + | chr5.3:31860913-31860932 | MS.gene55396:intron | 15.0% |
| !!! | TTCATTTTCTTTTTTGTTAT+TGG | + | chr5.3:31860912-31860931 | MS.gene55396:intron | 15.0% |
| !! | AAAGAAAATGAAAGTGAAAA+AGG | - | chr5.3:31860904-31860923 | None:intergenic | 20.0% |
| !! | ACCTGAAAAACATTTATAAA+TGG | + | chr5.3:31865255-31865274 | MS.gene55396:intron | 20.0% |
| !! | AGTTAATATTGTGGTTTATT+TGG | + | chr5.3:31865967-31865986 | MS.gene55396:intron | 20.0% |
| !! | ATTTATAAGAGATTCAAAAG+GGG | - | chr5.3:31862140-31862159 | None:intergenic | 20.0% |
| !! | CAAAAAACACTATAATTGTA+AGG | + | chr5.3:31861413-31861432 | MS.gene55396:intron | 20.0% |
| !! | CATGATATAAAATACAAGTT+AGG | - | chr5.3:31863897-31863916 | None:intergenic | 20.0% |
| !! | CCTGAAAAACATTTATAAAT+GGG | + | chr5.3:31865256-31865275 | MS.gene55396:intron | 20.0% |
| !! | CTATTTATAAGAGATTCAAA+AGG | - | chr5.3:31862142-31862161 | None:intergenic | 20.0% |
| !! | TAAATACTATCTTAGGATTT+GGG | - | chr5.3:31865333-31865352 | None:intergenic | 20.0% |
| !! | TAAGATAAATTAGACATCAT+GGG | + | chr5.3:31865751-31865770 | MS.gene55396:intron | 20.0% |
| !! | TATAGAAAGGGAAAATTAAT+GGG | - | chr5.3:31860852-31860871 | None:intergenic | 20.0% |
| !! | TGTATATAAAAATATTGGCA+TGG | + | chr5.3:31865070-31865089 | MS.gene55396:intron | 20.0% |
| !! | TGTCTAATTTATCTTAAACT+TGG | - | chr5.3:31865747-31865766 | None:intergenic | 20.0% |
| !! | TTAAGATAAATTAGACATCA+TGG | + | chr5.3:31865750-31865769 | MS.gene55396:intron | 20.0% |
| !! | TTATAGAAAGGGAAAATTAA+TGG | - | chr5.3:31860853-31860872 | None:intergenic | 20.0% |
| !! | TTTATATCATGTTTAAACCA+TGG | + | chr5.3:31863906-31863925 | MS.gene55396:intron | 20.0% |
| !!! | CAATTAATTCATTTGTTGTT+TGG | + | chr5.3:31864265-31864284 | MS.gene55396:intron | 20.0% |
| !!! | CAGTGTAAGTATTTTTTAAT+TGG | + | chr5.3:31861066-31861085 | MS.gene55396:intron | 20.0% |
| !!! | CTTACAATTATAGTGTTTTT+TGG | - | chr5.3:31861415-31861434 | None:intergenic | 20.0% |
| !!! | CTTCATATATCTTTTTTTTG+TGG | - | chr5.3:31862930-31862949 | None:intergenic | 20.0% |
| !!! | GCTATATGTTGATTTTAATT+AGG | + | chr5.3:31864591-31864610 | MS.gene55396:intron | 20.0% |
| !!! | GCTTTTATCAACATATAAAA+AGG | - | chr5.3:31862638-31862657 | None:intergenic | 20.0% |
| !!! | TTATTGGTTTAAATCATTGT+GGG | + | chr5.3:31865825-31865844 | MS.gene55396:intron | 20.0% |
| !!! | TTTGTTTTGAGAGTTTATAT+TGG | + | chr5.3:31865220-31865239 | MS.gene55396:intron | 20.0% |
| !!! | TTTTCATATAAACTATAAGC+TGG | + | chr5.3:31861934-31861953 | MS.gene55396:intron | 20.0% |
| !!! | TTTTTTTGTTTTTTGAGCAA+TGG | + | chr5.3:31862377-31862396 | MS.gene55396:intron | 20.0% |
| ! | AAACTCAAATATTATACGGA+AGG | - | chr5.3:31866322-31866341 | None:intergenic | 25.0% |
| ! | AAACTTTGTTAAATTGCCTA+TGG | + | chr5.3:31864203-31864222 | MS.gene55396:intron | 25.0% |
| ! | AAATACTATCTTAGGATTTG+GGG | - | chr5.3:31865332-31865351 | None:intergenic | 25.0% |
| ! | AACTCAAATATTATACGGAA+GGG | - | chr5.3:31866321-31866340 | None:intergenic | 25.0% |
| ! | AAGAAATATTGTTACAGACT+AGG | - | chr5.3:31863091-31863110 | None:intergenic | 25.0% |
| ! | AATTCTGTTAGAATGATTCT+CGG | + | chr5.3:31864358-31864377 | MS.gene55396:intron | 25.0% |
| ! | ACATAAGCAATAATAGGATA+AGG | - | chr5.3:31861883-31861902 | None:intergenic | 25.0% |
| ! | ACTATCTATTCTTACACATA+TGG | - | chr5.3:31865191-31865210 | None:intergenic | 25.0% |
| ! | ACTATTATTTCAACAAGCTA+TGG | - | chr5.3:31860947-31860966 | None:intergenic | 25.0% |
| ! | ACTCCATATTACAAAATCAT+TGG | - | chr5.3:31861498-31861517 | None:intergenic | 25.0% |
| ! | AGTCTTCATTAGATGTAATA+TGG | + | chr5.3:31865446-31865465 | MS.gene55396:intron | 25.0% |
| ! | AGTTATATCAGAAAAGCTAA+AGG | - | chr5.3:31864329-31864348 | None:intergenic | 25.0% |
| ! | ATATATTGAACTCTCAACAT+GGG | + | chr5.3:31861554-31861573 | MS.gene55396:CDS | 25.0% |
| ! | ATCAAACCTAAAACCAAAAT+TGG | - | chr5.3:31866216-31866235 | None:intergenic | 25.0% |
| ! | ATTGTGCGTTATATATTAAC+TGG | + | chr5.3:31862827-31862846 | MS.gene55396:intron | 25.0% |
| ! | CAAATATATCAAACAAAGAG+AGG | - | chr5.3:31865647-31865666 | None:intergenic | 25.0% |
| ! | CATAAGCAATAATAGGATAA+GGG | - | chr5.3:31861882-31861901 | None:intergenic | 25.0% |
| ! | CCAGTTAGAAATTATAGAAA+GGG | - | chr5.3:31860864-31860883 | None:intergenic | 25.0% |
| ! | CCTTTCTATAATTTCTAACT+GGG | + | chr5.3:31860862-31860881 | MS.gene55396:intron | 25.0% |
| ! | CTAAATACTATCTTAGGATT+TGG | - | chr5.3:31865334-31865353 | None:intergenic | 25.0% |
| ! | CTAAATTATCAGCATAGATA+GGG | - | chr5.3:31863022-31863041 | None:intergenic | 25.0% |
| ! | CTATTATTTCAACAAGCTAT+GGG | - | chr5.3:31860946-31860965 | None:intergenic | 25.0% |
| ! | GAAAAACATTTATAAATGGG+AGG | + | chr5.3:31865259-31865278 | MS.gene55396:intron | 25.0% |
| ! | GACAACAATTTAATGAGAAA+AGG | - | chr5.3:31862880-31862899 | None:intergenic | 25.0% |
| ! | GCTGAAAATAAAAACAAAAC+AGG | - | chr5.3:31863414-31863433 | None:intergenic | 25.0% |
| ! | TAAATTATCAGCATAGATAG+GGG | - | chr5.3:31863021-31863040 | None:intergenic | 25.0% |
| ! | TAAGGTCTAAATACTATCTT+AGG | - | chr5.3:31865340-31865359 | None:intergenic | 25.0% |
| ! | TCATCCATTAATGATACTTA+CGG | - | chr5.3:31862347-31862366 | None:intergenic | 25.0% |
| ! | TCTTTAATTAGAGATGAATC+TGG | - | chr5.3:31864688-31864707 | None:intergenic | 25.0% |
| ! | TTATAAATAGATGCAGTGTT+CGG | + | chr5.3:31862152-31862171 | MS.gene55396:intron | 25.0% |
| ! | TTCTAGTATAACAGTTACAA+AGG | - | chr5.3:31861457-31861476 | None:intergenic | 25.0% |
| !! | AAATGTAAAATCTTTGGTGT+GGG | + | chr5.3:31865409-31865428 | MS.gene55396:intron | 25.0% |
| !! | AATTCTTAACAAGGTTGATT+TGG | + | chr5.3:31863182-31863201 | MS.gene55396:CDS | 25.0% |
| !! | AGTTAGATGAAGTATCAATT+AGG | + | chr5.3:31866059-31866078 | MS.gene55396:intron | 25.0% |
| !! | ATATTTTCAGATAGCATTTG+CGG | + | chr5.3:31862802-31862821 | MS.gene55396:CDS | 25.0% |
| !! | CCCATTTATAAATGTTTTTC+AGG | - | chr5.3:31865259-31865278 | None:intergenic | 25.0% |
| !! | TCTTGTTAATTTTGTGATAG+TGG | + | chr5.3:31862605-31862624 | MS.gene55396:intron | 25.0% |
| !! | TTTAGGTATTTTGTGTTTGT+AGG | + | chr5.3:31862209-31862228 | MS.gene55396:intron | 25.0% |
| !!! | AAAAACAGAATTTTAAGGCA+AGG | - | chr5.3:31865289-31865308 | None:intergenic | 25.0% |
| !!! | AAAACAGAATTTTAAGGCAA+GGG | - | chr5.3:31865288-31865307 | None:intergenic | 25.0% |
| !!! | AAAGAGCATTGATAAATGAA+GGG | + | chr5.3:31861626-31861645 | MS.gene55396:CDS | 25.0% |
| !!! | ATTTATTTCTATAAGCTCTC+TGG | - | chr5.3:31861974-31861993 | None:intergenic | 25.0% |
| !!! | CTTATTGGTTTAAATCATTG+TGG | + | chr5.3:31865824-31865843 | MS.gene55396:intron | 25.0% |
| !!! | TAATACATAGATGGTGTTAT+TGG | - | chr5.3:31865617-31865636 | None:intergenic | 25.0% |
| !!! | TTTATTTCTATAAGCTCTCT+GGG | - | chr5.3:31861973-31861992 | None:intergenic | 25.0% |
| AAAACAAAACAGGTAAACTG+CGG | - | chr5.3:31863404-31863423 | None:intergenic | 30.0% | |
| AACAGAAGATTGTTGAGAAA+TGG | - | chr5.3:31860780-31860799 | None:intergenic | 30.0% | |
| AACAGTATCATTTGTTTGAC+AGG | - | chr5.3:31862496-31862515 | None:intergenic | 30.0% | |
| AATATTGTTACAGACTAGGT+AGG | - | chr5.3:31863087-31863106 | None:intergenic | 30.0% | |
| AATTAAGTTTGCATTCGCAT+TGG | + | chr5.3:31864099-31864118 | MS.gene55396:intron | 30.0% | |
| ACAGTATCATTTGTTTGACA+GGG | - | chr5.3:31862495-31862514 | None:intergenic | 30.0% | |
| ACTAAAAAGCTTCATGATAG+TGG | + | chr5.3:31863481-31863500 | MS.gene55396:CDS | 30.0% | |
| ACTCAAATATTATACGGAAG+GGG | - | chr5.3:31866320-31866339 | None:intergenic | 30.0% | |
| AGTAGAGTAACAATTGAGTT+TGG | + | chr5.3:31865518-31865537 | MS.gene55396:intron | 30.0% | |
| AGTATGCTAAAAGAGAAACA+AGG | + | chr5.3:31864717-31864736 | MS.gene55396:intron | 30.0% | |
| ATATTGTTACAGACTAGGTA+GGG | - | chr5.3:31863086-31863105 | None:intergenic | 30.0% | |
| ATTGTCCAAGAAATAGTTCT+TGG | + | chr5.3:31862537-31862556 | MS.gene55396:intron | 30.0% | |
| ATTTAGTCAAAAAGATCCCT+TGG | + | chr5.3:31864756-31864775 | MS.gene55396:intron | 30.0% | |
| ATTTCTCAACAATCTTCTGT+TGG | + | chr5.3:31860779-31860798 | MS.gene55396:CDS | 30.0% | |
| CAAATGTAAAATCTTTGGTG+TGG | + | chr5.3:31865408-31865427 | MS.gene55396:intron | 30.0% | |
| CATATAGCAATACCTATTGA+AGG | - | chr5.3:31864579-31864598 | None:intergenic | 30.0% | |
| CATATATTGAACTCTCAACA+TGG | + | chr5.3:31861553-31861572 | MS.gene55396:CDS | 30.0% | |
| CCCAGTTAGAAATTATAGAA+AGG | - | chr5.3:31860865-31860884 | None:intergenic | 30.0% | |
| CCCTTTCTATAATTTCTAAC+TGG | + | chr5.3:31860861-31860880 | MS.gene55396:intron | 30.0% | |
| CCTAAATTATCAGCATAGAT+AGG | - | chr5.3:31863023-31863042 | None:intergenic | 30.0% | |
| CCTATCTATGCTGATAATTT+AGG | + | chr5.3:31863020-31863039 | MS.gene55396:intron | 30.0% | |
| CGCACTAGAAATTTAAACAT+TGG | + | chr5.3:31861794-31861813 | MS.gene55396:intron | 30.0% | |
| CGCTTCAAATGTAAAATCTT+TGG | + | chr5.3:31865403-31865422 | MS.gene55396:intron | 30.0% | |
| GAAAACTCACATACAAGTTA+GGG | - | chr5.3:31861318-31861337 | None:intergenic | 30.0% | |
| GGACATTGTAATTCTTAACA+AGG | + | chr5.3:31863173-31863192 | MS.gene55396:intron | 30.0% | |
| GGAGAATGTTAATACATAGA+TGG | - | chr5.3:31865626-31865645 | None:intergenic | 30.0% | |
| GTTGTAGAATCTACAATCTA+GGG | - | chr5.3:31864246-31864265 | None:intergenic | 30.0% | |
| TACTAAGCTATTCCTTCAAT+AGG | + | chr5.3:31864564-31864583 | MS.gene55396:intron | 30.0% | |
| TACTTGATTAGAAGCTATAC+AGG | - | chr5.3:31863628-31863647 | None:intergenic | 30.0% | |
| TAGAAAATGCCGAAATTGTT+AGG | + | chr5.3:31861271-31861290 | MS.gene55396:intron | 30.0% | |
| TCATTTAAGTGAAGCAAAAG+CGG | - | chr5.3:31863760-31863779 | None:intergenic | 30.0% | |
| TCTAATACTCACTCTCTTAT+TGG | + | chr5.3:31865809-31865828 | MS.gene55396:intron | 30.0% | |
| TCTAGTTAAGTTCGAACTTA+TGG | - | chr5.3:31861255-31861274 | None:intergenic | 30.0% | |
| TGAAAACTCACATACAAGTT+AGG | - | chr5.3:31861319-31861338 | None:intergenic | 30.0% | |
| TGCATTTAGTGTTAGGAAAA+TGG | + | chr5.3:31863684-31863703 | MS.gene55396:intron | 30.0% | |
| TGTTGTAGAATCTACAATCT+AGG | - | chr5.3:31864247-31864266 | None:intergenic | 30.0% | |
| TTAGAAGCTATACAGGAAAA+AGG | - | chr5.3:31863621-31863640 | None:intergenic | 30.0% | |
| TTGAAGGAATAGCTTAGTAT+AGG | - | chr5.3:31864563-31864582 | None:intergenic | 30.0% | |
| TTGGACTCATAATTACACTT+AGG | + | chr5.3:31861813-31861832 | MS.gene55396:intron | 30.0% | |
| TTGGGAGAAGAAATATGATA+TGG | + | chr5.3:31863958-31863977 | MS.gene55396:CDS | 30.0% | |
| TTTAAAAATCTGGTTGGACA+TGG | + | chr5.3:31865572-31865591 | MS.gene55396:intron | 30.0% | |
| TTTGGCAAAACAAAATCTTG+TGG | + | chr5.3:31865985-31866004 | MS.gene55396:intron | 30.0% | |
| TTTGTTGAAGAAGCCAAAAT+TGG | - | chr5.3:31866250-31866269 | None:intergenic | 30.0% | |
| ! | ACATTTTATAGTACCTGTCA+TGG | + | chr5.3:31862562-31862581 | MS.gene55396:intron | 30.0% |
| ! | AGACCTTATTTAAGATCTCT+TGG | + | chr5.3:31865352-31865371 | MS.gene55396:intron | 30.0% |
| ! | CAACACTTTAAAAATCTGGT+TGG | + | chr5.3:31865566-31865585 | MS.gene55396:intron | 30.0% |
| ! | CTAGCAACACTTTAAAAATC+TGG | + | chr5.3:31865562-31865581 | MS.gene55396:intron | 30.0% |
| ! | CTTTACAGTTATAGCGTTTT+TGG | + | chr5.3:31861036-31861055 | MS.gene55396:intron | 30.0% |
| ! | TATTTCTTGGACAATTTTGC+GGG | - | chr5.3:31862532-31862551 | None:intergenic | 30.0% |
| ! | TTTTTGGATGATAGATGAAG+TGG | - | chr5.3:31861353-31861372 | None:intergenic | 30.0% |
| !! | AAGAGCATTGATAAATGAAG+GGG | + | chr5.3:31861627-31861646 | MS.gene55396:CDS | 30.0% |
| !! | CTATTTCTTGGACAATTTTG+CGG | - | chr5.3:31862533-31862552 | None:intergenic | 30.0% |
| !! | GAAAGAGCATTGATAAATGA+AGG | + | chr5.3:31861625-31861644 | MS.gene55396:CDS | 30.0% |
| !! | TGTAATATGGAGTTCTGAAT+TGG | + | chr5.3:31861505-31861524 | MS.gene55396:intron | 30.0% |
| !!! | TCTTTTTCAAACAGTAACAG+TGG | - | chr5.3:31864127-31864146 | None:intergenic | 30.0% |
| AAATTGCAAACCCTTATACG+AGG | - | chr5.3:31864973-31864992 | None:intergenic | 35.0% | |
| AACCAAAGAATAGATGCCAA+AGG | - | chr5.3:31862280-31862299 | None:intergenic | 35.0% | |
| AACCGTCTAACTGTATTATC+TGG | - | chr5.3:31864483-31864502 | None:intergenic | 35.0% | |
| AAGCACTTGTGAGATTCTTA+GGG | - | chr5.3:31862042-31862061 | None:intergenic | 35.0% | |
| AATATTAACTACCCATACCG+AGG | - | chr5.3:31865957-31865976 | None:intergenic | 35.0% | |
| ACTCTACTTATAACCAGCTA+AGG | - | chr5.3:31865506-31865525 | None:intergenic | 35.0% | |
| AGTGGAAGAAAGAAGAAAAC+AGG | + | chr5.3:31866415-31866434 | MS.gene55396:CDS | 35.0% | |
| ATTACAAAATCATTGGCCGA+GGG | - | chr5.3:31861491-31861510 | None:intergenic | 35.0% | |
| CAGTAGTTTCCAGCAATATA+TGG | - | chr5.3:31862240-31862259 | None:intergenic | 35.0% | |
| CATACTTCAGTAATCTTGAC+AGG | + | chr5.3:31864179-31864198 | MS.gene55396:intron | 35.0% | |
| CATATATTGCTGGAAACTAC+TGG | + | chr5.3:31862238-31862257 | MS.gene55396:CDS | 35.0% | |
| CTACGAGTGTGTTAATGTTA+TGG | - | chr5.3:31863254-31863273 | None:intergenic | 35.0% | |
| CTCAAATATTATACGGAAGG+GGG | - | chr5.3:31866319-31866338 | None:intergenic | 35.0% | |
| CTGTCAAGATTACTGAAGTA+TGG | - | chr5.3:31864181-31864200 | None:intergenic | 35.0% | |
| GCTATCTGAAAATATGCTTC+AGG | - | chr5.3:31862797-31862816 | None:intergenic | 35.0% | |
| GCTGTGATATTGAATGAGTT+TGG | + | chr5.3:31861586-31861605 | MS.gene55396:CDS | 35.0% | |
| GGTATGGGTAGTTAATATTG+TGG | + | chr5.3:31865958-31865977 | MS.gene55396:intron | 35.0% | |
| GGTCCAAGAGATCTTAAATA+AGG | - | chr5.3:31865358-31865377 | None:intergenic | 35.0% | |
| GTCACCGTAAGTATCATTAA+TGG | + | chr5.3:31862340-31862359 | MS.gene55396:intron | 35.0% | |
| TAACAATGCCTCTAAATGTG+CGG | - | chr5.3:31863440-31863459 | None:intergenic | 35.0% | |
| TAAGCACTTGTGAGATTCTT+AGG | - | chr5.3:31862043-31862062 | None:intergenic | 35.0% | |
| TATTACAAAATCATTGGCCG+AGG | - | chr5.3:31861492-31861511 | None:intergenic | 35.0% | |
| TCATGCGCTATCAATTAACT+GGG | - | chr5.3:31865048-31865067 | None:intergenic | 35.0% | |
| TCTATCAAACTCTCATCACA+AGG | - | chr5.3:31864913-31864932 | None:intergenic | 35.0% | |
| TGATGAATTGCATACTTTGC+AGG | + | chr5.3:31864021-31864040 | MS.gene55396:CDS | 35.0% | |
| TGCCAGATAATACAGTTAGA+CGG | + | chr5.3:31864478-31864497 | MS.gene55396:intron | 35.0% | |
| TGCGTTATGCATTTAGTGTT+AGG | + | chr5.3:31863677-31863696 | MS.gene55396:intron | 35.0% | |
| TGGAACAGTTGATCTTGATA+AGG | + | chr5.3:31863531-31863550 | MS.gene55396:CDS | 35.0% | |
| TGTGATCAGAACGATATCAA+AGG | - | chr5.3:31864535-31864554 | None:intergenic | 35.0% | |
| TTGATAAATGAAGGGGAAAG+TGG | + | chr5.3:31861634-31861653 | MS.gene55396:CDS | 35.0% | |
| TTGCACTGTTAAGCATAGTT+TGG | + | chr5.3:31861702-31861721 | MS.gene55396:CDS | 35.0% | |
| TTTGGCATCTATTCTTTGGT+TGG | + | chr5.3:31862279-31862298 | MS.gene55396:CDS | 35.0% | |
| ! | AATGAGTTTGGTGAGGAAAT+TGG | + | chr5.3:31861598-31861617 | MS.gene55396:CDS | 35.0% |
| ! | AATTGTGTTTCTACCGAAGT+AGG | + | chr5.3:31862712-31862731 | MS.gene55396:intron | 35.0% |
| ! | AATTTTACATGCCTAACCAC+TGG | - | chr5.3:31864064-31864083 | None:intergenic | 35.0% |
| ! | ATAATGTTGCTGCTTCTTTC+AGG | + | chr5.3:31863152-31863171 | MS.gene55396:intron | 35.0% |
| ! | ATTAGTTTGAATGCCATGAC+AGG | - | chr5.3:31862578-31862597 | None:intergenic | 35.0% |
| ! | CAATCTTGAACGTTTTCACA+TGG | - | chr5.3:31865163-31865182 | None:intergenic | 35.0% |
| ! | CATTTAAGACTCCTTTGCAA+CGG | - | chr5.3:31863991-31864010 | None:intergenic | 35.0% |
| ! | CGGCCAATGATTTTGTAATA+TGG | + | chr5.3:31861492-31861511 | MS.gene55396:intron | 35.0% |
| ! | GATATTGAATGAGTTTGGTG+AGG | + | chr5.3:31861591-31861610 | MS.gene55396:CDS | 35.0% |
| ! | TGTCTCCAAGAACTATTTCT+TGG | - | chr5.3:31862545-31862564 | None:intergenic | 35.0% |
| ! | TTGCTAGCTCTTGGAATTTA+GGG | - | chr5.3:31865549-31865568 | None:intergenic | 35.0% |
| !! | CTTGTATGTGAGTTTTCAAG+TGG | + | chr5.3:31861321-31861340 | MS.gene55396:intron | 35.0% |
| !! | GCACTCACTCTTTTATTTGA+TGG | - | chr5.3:31865902-31865921 | None:intergenic | 35.0% |
| !! | TTTAAAGTGTTGCTAGCTCT+TGG | - | chr5.3:31865558-31865577 | None:intergenic | 35.0% |
| !!! | AGTGTGCCAATTTTGGTTTT+AGG | + | chr5.3:31866207-31866226 | MS.gene55396:intron | 35.0% |
| !!! | GTTTTAGGTTTGATTCTACC+CGG | + | chr5.3:31866222-31866241 | MS.gene55396:intron | 35.0% |
| AAATATTGGCATGGTAGCAG+TGG | + | chr5.3:31865079-31865098 | MS.gene55396:intron | 40.0% | |
| AACAACGATTCCTGCTAACA+CGG | + | chr5.3:31863719-31863738 | MS.gene55396:intron | 40.0% | |
| AACATCCTCTTGCAAATGCA+AGG | + | chr5.3:31864844-31864863 | MS.gene55396:intron | 40.0% | |
| ACCAAAATTGGCACACTCTA+AGG | - | chr5.3:31866204-31866223 | None:intergenic | 40.0% | |
| ACGTCAAGGACTAAAAGCAA+CGG | - | chr5.3:31861117-31861136 | None:intergenic | 40.0% | |
| ACTTATAACCAGCTAAGGCA+AGG | - | chr5.3:31865501-31865520 | None:intergenic | 40.0% | |
| AGCTTGTGCAGAGAAAAGAA+AGG | + | chr5.3:31861740-31861759 | MS.gene55396:CDS | 40.0% | |
| AGGTCCATTGCATAATGTTG+CGG | + | chr5.3:31862098-31862117 | MS.gene55396:intron | 40.0% | |
| ATACAGTTAGACGGTTACAC+AGG | + | chr5.3:31864487-31864506 | MS.gene55396:intron | 40.0% | |
| ATCACTTATCGGTGAAATCC+TGG | + | chr5.3:31866352-31866371 | MS.gene55396:intron | 40.0% | |
| ATCATTGTGGGTCTACACAT+TGG | + | chr5.3:31865837-31865856 | MS.gene55396:intron | 40.0% | |
| ATGGATGTATACCGTTGCAA+AGG | + | chr5.3:31863977-31863996 | MS.gene55396:CDS | 40.0% | |
| ATGGCTAGAGGAGATTCTTT+GGG | + | chr5.3:31863940-31863959 | MS.gene55396:CDS | 40.0% | |
| CACCTTTGGCATCTATTCTT+TGG | + | chr5.3:31862275-31862294 | MS.gene55396:CDS | 40.0% | |
| CATAGATAGGGGAAGATACT+TGG | - | chr5.3:31863010-31863029 | None:intergenic | 40.0% | |
| CTCAATATAATCGCAACACG+CGG | - | chr5.3:31861159-31861178 | None:intergenic | 40.0% | |
| CTCATGCGCTATCAATTAAC+TGG | - | chr5.3:31865049-31865068 | None:intergenic | 40.0% | |
| CTGAAAGTAGACAGAACCAT+AGG | - | chr5.3:31864222-31864241 | None:intergenic | 40.0% | |
| CTTATAACCAGCTAAGGCAA+GGG | - | chr5.3:31865500-31865519 | None:intergenic | 40.0% | |
| GAAATAAATGCAGCCCACTT+GGG | + | chr5.3:31866153-31866172 | MS.gene55396:intron | 40.0% | |
| GAAATAGAACCCACACAAAG+TGG | + | chr5.3:31865859-31865878 | MS.gene55396:intron | 40.0% | |
| GAGGTGAAGAGTCTATCTAT+AGG | + | chr5.3:31864391-31864410 | MS.gene55396:intron | 40.0% | |
| GATGAGAGTTTGATAGAGCA+AGG | + | chr5.3:31864916-31864935 | MS.gene55396:intron | 40.0% | |
| GGCATTCAGCCTAACAATTT+CGG | - | chr5.3:31861283-31861302 | None:intergenic | 40.0% | |
| TACAGTTAGACGGTTACACA+GGG | + | chr5.3:31864488-31864507 | MS.gene55396:intron | 40.0% | |
| TAGGCTAGACCATATATTGC+TGG | + | chr5.3:31862228-31862247 | MS.gene55396:intron | 40.0% | |
| TAGTCACACACCTCGTATAA+GGG | + | chr5.3:31864960-31864979 | MS.gene55396:intron | 40.0% | |
| TATACGAGATTGTTCCTGCT+CGG | + | chr5.3:31866391-31866410 | MS.gene55396:CDS | 40.0% | |
| TATGGCTAGAGGAGATTCTT+TGG | + | chr5.3:31863939-31863958 | MS.gene55396:CDS | 40.0% | |
| TCAGATAAGGTAATCCAAGC+AGG | + | chr5.3:31862078-31862097 | MS.gene55396:intron | 40.0% | |
| TCTTTGGTTGGATGAACAGT+TGG | + | chr5.3:31862291-31862310 | MS.gene55396:CDS | 40.0% | |
| TGAAATAAATGCAGCCCACT+TGG | + | chr5.3:31866152-31866171 | MS.gene55396:intron | 40.0% | |
| TGAACCGCAACATTATGCAA+TGG | - | chr5.3:31862105-31862124 | None:intergenic | 40.0% | |
| TGGTGCAGTTGTTGAAGAAT+GGG | + | chr5.3:31861654-31861673 | MS.gene55396:CDS | 40.0% | |
| TGTTGAATCTCAACAGCAAG+AGG | - | chr5.3:31860740-31860759 | None:intergenic | 40.0% | |
| TTAGACATCATGGGTATGAG+TGG | + | chr5.3:31865760-31865779 | MS.gene55396:intron | 40.0% | |
| TTGGCATCTACTACCTACTT+CGG | - | chr5.3:31862728-31862747 | None:intergenic | 40.0% | |
| ! | ACAGACTAGGTAGGGTATTA+TGG | - | chr5.3:31863078-31863097 | None:intergenic | 40.0% |
| ! | ACCTTAGAGTGTGCCAATTT+TGG | + | chr5.3:31866200-31866219 | MS.gene55396:intron | 40.0% |
| ! | ACTCTCATCACTGGTTATCT+TGG | + | chr5.3:31860806-31860825 | MS.gene55396:CDS | 40.0% |
| ! | AGAACAAAGCATTCTCTGCT+AGG | - | chr5.3:31863823-31863842 | None:intergenic | 40.0% |
| ! | AGCTCTTGGAATTTAGGGTT+TGG | - | chr5.3:31865544-31865563 | None:intergenic | 40.0% |
| ! | CTAGTGGATAAGCTCAGATA+AGG | + | chr5.3:31862065-31862084 | MS.gene55396:intron | 40.0% |
| ! | GATTCTCGGTTAGTTACATG+AGG | + | chr5.3:31864372-31864391 | MS.gene55396:intron | 40.0% |
| ! | GTTGCTAGCTCTTGGAATTT+AGG | - | chr5.3:31865550-31865569 | None:intergenic | 40.0% |
| !! | AGCAGTGGTGTTACTTTGTT+AGG | + | chr5.3:31865094-31865113 | MS.gene55396:intron | 40.0% |
| !! | GAATGGGTTGAACTTGCTAA+TGG | + | chr5.3:31861670-31861689 | MS.gene55396:CDS | 40.0% |
| !! | GGAAAATTAATGGGTTACCG+TGG | - | chr5.3:31860843-31860862 | None:intergenic | 40.0% |
| !! | GTTGATTTGGTATCTGCAGA+AGG | + | chr5.3:31863195-31863214 | MS.gene55396:CDS | 40.0% |
| !!! | ACAGAATTTTAAGGCAAGGG+AGG | - | chr5.3:31865285-31865304 | None:intergenic | 40.0% |
| AAATGTTCGCTTCCAGCTCA+AGG | + | chr5.3:31862748-31862767 | MS.gene55396:CDS | 45.0% | |
| AACCATGGCAGACTCGTATA+TGG | + | chr5.3:31863921-31863940 | MS.gene55396:intron | 45.0% | |
| AAGAAGCCAAAATTGGCACC+GGG | - | chr5.3:31866243-31866262 | None:intergenic | 45.0% | |
| AAGTTAGGGATCCCAAGTCA+TGG | - | chr5.3:31861304-31861323 | None:intergenic | 45.0% | |
| AATCACGCACTTGTGTACTG+AGG | - | chr5.3:31862670-31862689 | None:intergenic | 45.0% | |
| ACAACGATTCCTGCTAACAC+GGG | + | chr5.3:31863720-31863739 | MS.gene55396:intron | 45.0% | |
| ACCATATGCATCAGTGAGAC+TGG | + | chr5.3:31863511-31863530 | MS.gene55396:CDS | 45.0% | |
| ACTCCCAACAGTTATGCCAA+GGG | - | chr5.3:31864775-31864794 | None:intergenic | 45.0% | |
| AGATCCCTTGGCATAACTGT+TGG | + | chr5.3:31864768-31864787 | MS.gene55396:intron | 45.0% | |
| AGATTCTTAGGGAGAGCTCA+TGG | - | chr5.3:31862031-31862050 | None:intergenic | 45.0% | |
| AGTCCTTGACGTCAGCTTAT+TGG | + | chr5.3:31861125-31861144 | MS.gene55396:intron | 45.0% | |
| ATAAGATCCGTCTTCACCAG+TGG | + | chr5.3:31864045-31864064 | MS.gene55396:intron | 45.0% | |
| ATAGAACCCACACAAAGTGG+TGG | + | chr5.3:31865862-31865881 | MS.gene55396:intron | 45.0% | |
| ATTGCTGGAAACTACTGGTG+TGG | + | chr5.3:31862243-31862262 | MS.gene55396:CDS | 45.0% | |
| CAGGAAATGAAGATGAGCCA+CGG | - | chr5.3:31862778-31862797 | None:intergenic | 45.0% | |
| CATTATGCAATGGACCTGCT+TGG | - | chr5.3:31862095-31862114 | None:intergenic | 45.0% | |
| CCTCTTGCAAATGCAAGGTA+AGG | + | chr5.3:31864849-31864868 | MS.gene55396:intron | 45.0% | |
| CCTTACCTTGCATTTGCAAG+AGG | - | chr5.3:31864852-31864871 | None:intergenic | 45.0% | |
| CGACAATGTCAAACCTGTCA+CGG | - | chr5.3:31864887-31864906 | None:intergenic | 45.0% | |
| CTAGTCACACACCTCGTATA+AGG | + | chr5.3:31864959-31864978 | MS.gene55396:intron | 45.0% | |
| CTCACAAGTGCTTATGCTAG+TGG | + | chr5.3:31862049-31862068 | MS.gene55396:intron | 45.0% | |
| CTCTTGGACCACCAGTTATA+GGG | + | chr5.3:31865368-31865387 | MS.gene55396:intron | 45.0% | |
| GAAGAAGCCAAAATTGGCAC+CGG | - | chr5.3:31866244-31866263 | None:intergenic | 45.0% | |
| GATCCCTTGGCATAACTGTT+GGG | + | chr5.3:31864769-31864788 | MS.gene55396:intron | 45.0% | |
| GCATTCTCTGCTAGGCATTA+CGG | - | chr5.3:31863815-31863834 | None:intergenic | 45.0% | |
| GGACTAAAAGCAACGGAGTT+TGG | - | chr5.3:31861110-31861129 | None:intergenic | 45.0% | |
| GTCCTTGACGTCAGCTTATT+GGG | + | chr5.3:31861126-31861145 | MS.gene55396:intron | 45.0% | |
| GTGGTGCAGTTGTTGAAGAA+TGG | + | chr5.3:31861653-31861672 | MS.gene55396:CDS | 45.0% | |
| TAAACTGCGGTCATGAAGGT+GGG | - | chr5.3:31863391-31863410 | None:intergenic | 45.0% | |
| TAGAACCCACACAAAGTGGT+GGG | + | chr5.3:31865863-31865882 | MS.gene55396:intron | 45.0% | |
| TAGGCTGAATGCCATGACTT+GGG | + | chr5.3:31861290-31861309 | MS.gene55396:intron | 45.0% | |
| TATGTCCCACCACTTTGTGT+GGG | - | chr5.3:31865871-31865890 | None:intergenic | 45.0% | |
| TATTTATGCCCCGTGTTAGC+AGG | - | chr5.3:31863732-31863751 | None:intergenic | 45.0% | |
| TCCAGTCTCACTGATGCATA+TGG | - | chr5.3:31863515-31863534 | None:intergenic | 45.0% | |
| TCTCTTGGACCACCAGTTAT+AGG | + | chr5.3:31865367-31865386 | MS.gene55396:intron | 45.0% | |
| TGAACTCTCAACATGGGAAG+AGG | + | chr5.3:31861560-31861579 | MS.gene55396:CDS | 45.0% | |
| TGAATCTCAACAGCAAGAGG+TGG | - | chr5.3:31860737-31860756 | None:intergenic | 45.0% | |
| TTACTGCAGTATCGTAAGCG+TGG | - | chr5.3:31863329-31863348 | None:intergenic | 45.0% | |
| TTAGGCTGAATGCCATGACT+TGG | + | chr5.3:31861289-31861308 | MS.gene55396:intron | 45.0% | |
| TTGCTAGCATTCCTCGGTAT+GGG | + | chr5.3:31865943-31865962 | MS.gene55396:intron | 45.0% | |
| ! | AGAATAGATGCCAAAGGTGC+TGG | - | chr5.3:31862274-31862293 | None:intergenic | 45.0% |
| ! | ATCACTGGTTATCTTGGTGC+TGG | + | chr5.3:31860812-31860831 | MS.gene55396:CDS | 45.0% |
| ! | GAGCTGGAAGCGAACATTTT+TGG | - | chr5.3:31862747-31862766 | None:intergenic | 45.0% |
| ! | GTTTGGTGAGGAAATTGGAG+TGG | + | chr5.3:31861603-31861622 | MS.gene55396:CDS | 45.0% |
| ! | TAGAAGTGTGTTCGAACCCT+CGG | + | chr5.3:31861472-31861491 | MS.gene55396:intron | 45.0% |
| ! | TATCAAGTGAGAGTGTGAGC+TGG | + | chr5.3:31865119-31865138 | MS.gene55396:intron | 45.0% |
| ! | TGAGTGTTGCTAGCATTCCT+CGG | + | chr5.3:31865937-31865956 | MS.gene55396:intron | 45.0% |
| !! | ATTCTACCCGGTGCCAATTT+TGG | + | chr5.3:31866234-31866253 | MS.gene55396:intron | 45.0% |
| !!! | TTTTTTTTAGATTTTATTTT+TGG | - | chr5.3:31861369-31861388 | None:intergenic | 5.0% |
| ACCAGTTATAGGGCCACTCA+GGG | + | chr5.3:31865378-31865397 | MS.gene55396:intron | 50.0% | |
| AGATGCAGTGTTCGGCAAAG+TGG | + | chr5.3:31862160-31862179 | MS.gene55396:intron | 50.0% | |
| AGATTGTTCCTGCTCGGAAG+TGG | + | chr5.3:31866397-31866416 | MS.gene55396:CDS | 50.0% | |
| AGCCATATACGAGTCTGCCA+TGG | - | chr5.3:31863926-31863945 | None:intergenic | 50.0% | |
| AGGTGTGTGACTAGACTGTG+TGG | - | chr5.3:31864953-31864972 | None:intergenic | 50.0% | |
| ATCCGTCTTCACCAGTGGTT+AGG | + | chr5.3:31864050-31864069 | MS.gene55396:intron | 50.0% | |
| CAACGATTCCTGCTAACACG+GGG | + | chr5.3:31863721-31863740 | MS.gene55396:intron | 50.0% | |
| CAGGTAAACTGCGGTCATGA+AGG | - | chr5.3:31863395-31863414 | None:intergenic | 50.0% | |
| CTTATCGGTGAAATCCTGGC+AGG | + | chr5.3:31866356-31866375 | MS.gene55396:intron | 50.0% | |
| GACGTCAGCTTATTGGGCAT+TGG | + | chr5.3:31861132-31861151 | MS.gene55396:intron | 50.0% | |
| GACTCCCAACAGTTATGCCA+AGG | - | chr5.3:31864776-31864795 | None:intergenic | 50.0% | |
| GATGCAGTGTTCGGCAAAGT+GGG | + | chr5.3:31862161-31862180 | MS.gene55396:intron | 50.0% | |
| GCAGACTCGTATATGGCTAG+AGG | + | chr5.3:31863928-31863947 | MS.gene55396:intron | 50.0% | |
| GTAAACTGCGGTCATGAAGG+TGG | - | chr5.3:31863392-31863411 | None:intergenic | 50.0% | |
| GTATGTCCCACCACTTTGTG+TGG | - | chr5.3:31865872-31865891 | None:intergenic | 50.0% | |
| GTCAGCAACTCCTAGATGAC+TGG | + | chr5.3:31864451-31864470 | MS.gene55396:intron | 50.0% | |
| GTTGCTAGCATTCCTCGGTA+TGG | + | chr5.3:31865942-31865961 | MS.gene55396:intron | 50.0% | |
| TAAATGCAGCCCACTTGGGT+TGG | + | chr5.3:31866157-31866176 | MS.gene55396:intron | 50.0% | |
| TCAGCATGCCGCACATTTAG+AGG | + | chr5.3:31863429-31863448 | MS.gene55396:intron | 50.0% | |
| TCTCTGCACAAGCTGCTCAA+GGG | - | chr5.3:31861734-31861753 | None:intergenic | 50.0% | |
| TCTTTCTTCCACTTCCGAGC+AGG | - | chr5.3:31866408-31866427 | None:intergenic | 50.0% | |
| TGCCCAATAAGCTGACGTCA+AGG | - | chr5.3:31861131-31861150 | None:intergenic | 50.0% | |
| TGCCTAACCACTGGTGAAGA+CGG | - | chr5.3:31864055-31864074 | None:intergenic | 50.0% | |
| TGTGGCTAATCCAGCACCTT+TGG | + | chr5.3:31862261-31862280 | MS.gene55396:CDS | 50.0% | |
| TTCTCTGCACAAGCTGCTCA+AGG | - | chr5.3:31861735-31861754 | None:intergenic | 50.0% | |
| TTGGTATCTGCAGAAGGCTC+TGG | + | chr5.3:31863201-31863220 | MS.gene55396:CDS | 50.0% | |
| ! | CATTTGAAGCGTTCCCTGAG+TGG | - | chr5.3:31865394-31865413 | None:intergenic | 50.0% |
| !! | GTTGGTGTCACTCTCATCAC+TGG | + | chr5.3:31860797-31860816 | MS.gene55396:CDS | 50.0% |
| !! | TCTTGGTGCTGGCAAATCCA+CGG | + | chr5.3:31860823-31860842 | MS.gene55396:CDS | 50.0% |
| ACCACCAGACCAACCCAAGT+GGG | - | chr5.3:31866169-31866188 | None:intergenic | 55.0% | |
| CACCAGTTATAGGGCCACTC+AGG | + | chr5.3:31865377-31865396 | MS.gene55396:intron | 55.0% | |
| CTGAGTGGCCCTATAACTGG+TGG | - | chr5.3:31865379-31865398 | None:intergenic | 55.0% | |
| CTGCAGTATCGTAAGCGTGG+CGG | - | chr5.3:31863326-31863345 | None:intergenic | 55.0% | |
| CTGGCATCTGCCAGTCATCT+AGG | - | chr5.3:31864464-31864483 | None:intergenic | 55.0% | |
| GAAGAGTCCCTTGCCTTAGC+TGG | + | chr5.3:31865490-31865509 | MS.gene55396:intron | 55.0% | |
| GACACGTGTCAGTCAGCTAG+AGG | - | chr5.3:31864430-31864449 | None:intergenic | 55.0% | |
| GCTGTGTGCATATCCGTGAC+AGG | + | chr5.3:31864871-31864890 | MS.gene55396:intron | 55.0% | |
| TAGTTCTCTCACAGCCTGCC+AGG | - | chr5.3:31866373-31866392 | None:intergenic | 55.0% | |
| TCCCTGAGTGGCCCTATAAC+TGG | - | chr5.3:31865382-31865401 | None:intergenic | 55.0% | |
| !! | AGAAGGCTCTGGAGCTCTAG+AGG | + | chr5.3:31863212-31863231 | MS.gene55396:CDS | 55.0% |
| !! | AGCTCTAGAGGAACTCGAGG+AGG | + | chr5.3:31863224-31863243 | MS.gene55396:CDS | 55.0% |
| !! | TGGAGCTCTAGAGGAACTCG+AGG | + | chr5.3:31863221-31863240 | MS.gene55396:CDS | 55.0% |
| !! | TGGTCTGGTGGTGTTGGCTT+GGG | + | chr5.3:31866177-31866196 | MS.gene55396:intron | 55.0% |
| !! | TTGGGTTGGTCTGGTGGTGT+TGG | + | chr5.3:31866171-31866190 | MS.gene55396:intron | 55.0% |
| !! | TTGGTCTGGTGGTGTTGGCT+TGG | + | chr5.3:31866176-31866195 | MS.gene55396:intron | 55.0% |
| CACCACCAGACCAACCCAAG+TGG | - | chr5.3:31866170-31866189 | None:intergenic | 60.0% | |
| !! | TTCCAGCTCAAGGAGCACCG+TGG | + | chr5.3:31862758-31862777 | MS.gene55396:CDS | 60.0% |
| AGCCACGGTGCTCCTTGAGC+TGG | - | chr5.3:31862763-31862782 | None:intergenic | 65.0% | |
| !! | GCAGCCCACTTGGGTTGGTC+TGG | + | chr5.3:31866162-31866181 | MS.gene55396:intron | 65.0% |
| !! | GCCCACTTGGGTTGGTCTGG+TGG | + | chr5.3:31866165-31866184 | MS.gene55396:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 31860710 | 31866459 | 31860710 | ID=MS.gene55396 |
| chr5.3 | mRNA | 31860710 | 31866459 | 31860710 | ID=MS.gene55396.t1;Parent=MS.gene55396 |
| chr5.3 | exon | 31860710 | 31860844 | 31860710 | ID=MS.gene55396.t1.exon1;Parent=MS.gene55396.t1 |
| chr5.3 | CDS | 31860710 | 31860844 | 31860710 | ID=cds.MS.gene55396.t1;Parent=MS.gene55396.t1 |
| chr5.3 | exon | 31861544 | 31861761 | 31861544 | ID=MS.gene55396.t1.exon2;Parent=MS.gene55396.t1 |
| chr5.3 | CDS | 31861544 | 31861761 | 31861544 | ID=cds.MS.gene55396.t1;Parent=MS.gene55396.t1 |
| chr5.3 | exon | 31862231 | 31862345 | 31862231 | ID=MS.gene55396.t1.exon3;Parent=MS.gene55396.t1 |
| chr5.3 | CDS | 31862231 | 31862345 | 31862231 | ID=cds.MS.gene55396.t1;Parent=MS.gene55396.t1 |
| chr5.3 | exon | 31862734 | 31862823 | 31862734 | ID=MS.gene55396.t1.exon4;Parent=MS.gene55396.t1 |
| chr5.3 | CDS | 31862734 | 31862823 | 31862734 | ID=cds.MS.gene55396.t1;Parent=MS.gene55396.t1 |
| chr5.3 | exon | 31863174 | 31863344 | 31863174 | ID=MS.gene55396.t1.exon5;Parent=MS.gene55396.t1 |
| chr5.3 | CDS | 31863174 | 31863344 | 31863174 | ID=cds.MS.gene55396.t1;Parent=MS.gene55396.t1 |
| chr5.3 | exon | 31863433 | 31863552 | 31863433 | ID=MS.gene55396.t1.exon6;Parent=MS.gene55396.t1 |
| chr5.3 | CDS | 31863433 | 31863552 | 31863433 | ID=cds.MS.gene55396.t1;Parent=MS.gene55396.t1 |
| chr5.3 | exon | 31863932 | 31864042 | 31863932 | ID=MS.gene55396.t1.exon7;Parent=MS.gene55396.t1 |
| chr5.3 | CDS | 31863932 | 31864042 | 31863932 | ID=cds.MS.gene55396.t1;Parent=MS.gene55396.t1 |
| chr5.3 | exon | 31866378 | 31866459 | 31866378 | ID=MS.gene55396.t1.exon8;Parent=MS.gene55396.t1 |
| chr5.3 | CDS | 31866378 | 31866459 | 31866378 | ID=cds.MS.gene55396.t1;Parent=MS.gene55396.t1 |
| Gene Sequence |
| Protein sequence |
