Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78682.t1 | XP_003614041.2 | 99.1 | 347 | 3 | 0 | 1 | 347 | 1 | 347 | 9.20E-191 | 676 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78682.t1 | Q99MB4 | 38.8 | 353 | 202 | 5 | 2 | 347 | 13 | 358 | 2.5e-64 | 247.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78682.t1 | G7JWS4 | 99.1 | 347 | 3 | 0 | 1 | 347 | 1 | 347 | 6.6e-191 | 676.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049159 | MS.gene78682 | 0.845473 | 3.97E-59 | -1.69E-46 |
| MS.gene049756 | MS.gene78682 | 0.832924 | 7.16E-56 | -1.69E-46 |
| MS.gene050277 | MS.gene78682 | 0.800067 | 1.71E-48 | -1.69E-46 |
| MS.gene050303 | MS.gene78682 | 0.805801 | 1.12E-49 | -1.69E-46 |
| MS.gene050317 | MS.gene78682 | 0.806555 | 7.77E-50 | -1.69E-46 |
| MS.gene050442 | MS.gene78682 | 0.815549 | 8.73E-52 | -1.69E-46 |
| MS.gene050605 | MS.gene78682 | 0.834057 | 3.73E-56 | -1.69E-46 |
| MS.gene050623 | MS.gene78682 | -0.826382 | 2.80E-54 | -1.69E-46 |
| MS.gene050642 | MS.gene78682 | 0.800911 | 1.15E-48 | -1.69E-46 |
| MS.gene050987 | MS.gene78682 | 0.817223 | 3.69E-52 | -1.69E-46 |
| MS.gene051243 | MS.gene78682 | 0.821059 | 4.94E-53 | -1.69E-46 |
| MS.gene05134 | MS.gene78682 | 0.802987 | 4.32E-49 | -1.69E-46 |
| MS.gene051451 | MS.gene78682 | 0.810805 | 9.60E-51 | -1.69E-46 |
| MS.gene051452 | MS.gene78682 | 0.810323 | 1.22E-50 | -1.69E-46 |
| MS.gene051535 | MS.gene78682 | 0.827095 | 1.89E-54 | -1.69E-46 |
| MS.gene05188 | MS.gene78682 | 0.80484 | 1.78E-49 | -1.69E-46 |
| MS.gene051975 | MS.gene78682 | 0.804489 | 2.11E-49 | -1.69E-46 |
| MS.gene052012 | MS.gene78682 | 0.82988 | 4.02E-55 | -1.69E-46 |
| MS.gene05215 | MS.gene78682 | 0.809777 | 1.60E-50 | -1.69E-46 |
| MS.gene052286 | MS.gene78682 | 0.81101 | 8.67E-51 | -1.69E-46 |
| MS.gene052426 | MS.gene78682 | 0.83893 | 2.15E-57 | -1.69E-46 |
| MS.gene052500 | MS.gene78682 | 0.807852 | 4.13E-50 | -1.69E-46 |
| MS.gene052502 | MS.gene78682 | 0.804198 | 2.42E-49 | -1.69E-46 |
| MS.gene052826 | MS.gene78682 | 0.805714 | 1.17E-49 | -1.69E-46 |
| MS.gene052954 | MS.gene78682 | 0.810776 | 9.74E-51 | -1.69E-46 |
| MS.gene053008 | MS.gene78682 | 0.82353 | 1.32E-53 | -1.69E-46 |
| MS.gene053080 | MS.gene78682 | 0.836256 | 1.04E-56 | -1.69E-46 |
| MS.gene053216 | MS.gene78682 | 0.801933 | 7.13E-49 | -1.69E-46 |
| MS.gene053226 | MS.gene78682 | 0.812527 | 4.05E-51 | -1.69E-46 |
| MS.gene05364 | MS.gene78682 | 0.802777 | 4.78E-49 | -1.69E-46 |
| MS.gene054657 | MS.gene78682 | 0.867579 | 1.23E-65 | -1.69E-46 |
| MS.gene054658 | MS.gene78682 | 0.859124 | 5.14E-63 | -1.69E-46 |
| MS.gene05510 | MS.gene78682 | 0.837809 | 4.17E-57 | -1.69E-46 |
| MS.gene05517 | MS.gene78682 | 0.831856 | 1.32E-55 | -1.69E-46 |
| MS.gene055222 | MS.gene78682 | 0.818938 | 1.51E-52 | -1.69E-46 |
| MS.gene055441 | MS.gene78682 | 0.824377 | 8.34E-54 | -1.69E-46 |
| MS.gene055512 | MS.gene78682 | 0.814826 | 1.26E-51 | -1.69E-46 |
| MS.gene055623 | MS.gene78682 | 0.856313 | 3.50E-62 | -1.69E-46 |
| MS.gene055701 | MS.gene78682 | 0.808711 | 2.71E-50 | -1.69E-46 |
| MS.gene056181 | MS.gene78682 | 0.803623 | 3.19E-49 | -1.69E-46 |
| MS.gene056403 | MS.gene78682 | 0.805696 | 1.18E-49 | -1.69E-46 |
| MS.gene056506 | MS.gene78682 | 0.810111 | 1.36E-50 | -1.69E-46 |
| MS.gene056552 | MS.gene78682 | 0.848981 | 4.33E-60 | -1.69E-46 |
| MS.gene056760 | MS.gene78682 | 0.818068 | 2.38E-52 | -1.69E-46 |
| MS.gene057140 | MS.gene78682 | 0.843976 | 1.01E-58 | -1.69E-46 |
| MS.gene057208 | MS.gene78682 | 0.803924 | 2.76E-49 | -1.69E-46 |
| MS.gene057234 | MS.gene78682 | 0.802525 | 5.38E-49 | -1.69E-46 |
| MS.gene057360 | MS.gene78682 | 0.805814 | 1.11E-49 | -1.69E-46 |
| MS.gene057555 | MS.gene78682 | 0.81186 | 5.67E-51 | -1.69E-46 |
| MS.gene057693 | MS.gene78682 | 0.826158 | 3.16E-54 | -1.69E-46 |
| MS.gene057869 | MS.gene78682 | 0.810614 | 1.06E-50 | -1.69E-46 |
| MS.gene05795 | MS.gene78682 | 0.806341 | 8.62E-50 | -1.69E-46 |
| MS.gene058126 | MS.gene78682 | 0.817924 | 2.56E-52 | -1.69E-46 |
| MS.gene058146 | MS.gene78682 | 0.825986 | 3.48E-54 | -1.69E-46 |
| MS.gene058238 | MS.gene78682 | 0.81112 | 8.21E-51 | -1.69E-46 |
| MS.gene058399 | MS.gene78682 | 0.82258 | 2.20E-53 | -1.69E-46 |
| MS.gene058548 | MS.gene78682 | 0.82442 | 8.15E-54 | -1.69E-46 |
| MS.gene058549 | MS.gene78682 | 0.809858 | 1.54E-50 | -1.69E-46 |
| MS.gene058595 | MS.gene78682 | 0.839137 | 1.90E-57 | -1.69E-46 |
| MS.gene059249 | MS.gene78682 | 0.825962 | 3.52E-54 | -1.69E-46 |
| MS.gene059317 | MS.gene78682 | 0.829933 | 3.90E-55 | -1.69E-46 |
| MS.gene059569 | MS.gene78682 | 0.800121 | 1.67E-48 | -1.69E-46 |
| MS.gene059725 | MS.gene78682 | 0.806751 | 7.06E-50 | -1.69E-46 |
| MS.gene05978 | MS.gene78682 | 0.8153 | 9.92E-52 | -1.69E-46 |
| MS.gene05979 | MS.gene78682 | 0.816062 | 6.71E-52 | -1.69E-46 |
| MS.gene059830 | MS.gene78682 | 0.845665 | 3.52E-59 | -1.69E-46 |
| MS.gene059842 | MS.gene78682 | 0.814528 | 1.47E-51 | -1.69E-46 |
| MS.gene060084 | MS.gene78682 | 0.803176 | 3.95E-49 | -1.69E-46 |
| MS.gene060296 | MS.gene78682 | 0.833324 | 5.69E-56 | -1.69E-46 |
| MS.gene060297 | MS.gene78682 | 0.830353 | 3.08E-55 | -1.69E-46 |
| MS.gene060365 | MS.gene78682 | 0.804067 | 2.58E-49 | -1.69E-46 |
| MS.gene060586 | MS.gene78682 | 0.83142 | 1.69E-55 | -1.69E-46 |
| MS.gene060683 | MS.gene78682 | 0.841525 | 4.51E-58 | -1.69E-46 |
| MS.gene060685 | MS.gene78682 | 0.837907 | 3.94E-57 | -1.69E-46 |
| MS.gene060803 | MS.gene78682 | 0.839058 | 1.99E-57 | -1.69E-46 |
| MS.gene060998 | MS.gene78682 | 0.823629 | 1.25E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene78682 | MS.gene029104 | PPI |
| MS.gene78682 | MS.gene90838 | PPI |
| MS.gene75176 | MS.gene78682 | PPI |
| MS.gene78682 | MS.gene066450 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78682.t1 | MTR_5g044050 | 99.135 | 347 | 3 | 0 | 1 | 347 | 1 | 347 | 0.0 | 701 |
| MS.gene78682.t1 | MTR_8g071110 | 38.824 | 340 | 187 | 7 | 22 | 347 | 57 | 389 | 4.18e-67 | 217 |
| MS.gene78682.t1 | MTR_1g115505 | 36.111 | 360 | 183 | 7 | 24 | 347 | 83 | 431 | 2.77e-65 | 213 |
| MS.gene78682.t1 | MTR_5g021440 | 89.583 | 48 | 4 | 1 | 1 | 48 | 1 | 47 | 1.89e-21 | 87.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78682.t1 | AT1G26520 | 73.775 | 347 | 85 | 2 | 4 | 347 | 13 | 356 | 0.0 | 527 |
| MS.gene78682.t1 | AT1G15730 | 38.202 | 356 | 177 | 7 | 24 | 347 | 86 | 430 | 8.07e-72 | 230 |
| MS.gene78682.t1 | AT1G80480 | 36.785 | 367 | 190 | 7 | 12 | 347 | 71 | 426 | 5.47e-69 | 223 |
Find 69 sgRNAs with CRISPR-Local
Find 342 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACCTTTGGCATCTATTCTT+TGG | 0.207860 | 5.3:+31876191 | MS.gene78682:CDS |
| AATGAGTTTGGTGAGGAAAT+TGG | 0.300166 | 5.3:+31875514 | MS.gene78682:CDS |
| CTACGAGTGTGTTAATGTTA+TGG | 0.302882 | 5.3:-31877167 | None:intergenic |
| TCAGCATGCCGCACATTTAG+AGG | 0.314137 | 5.3:+31877345 | MS.gene78682:intron |
| TATGGCTAGAGGAGATTCTT+TGG | 0.317773 | 5.3:+31877855 | MS.gene78682:CDS |
| TGATGAATTGCATACTTTGC+AGG | 0.320221 | 5.3:+31877937 | MS.gene78682:CDS |
| ATGAATAAGATAGTATTTAT+AGG | 0.327529 | 5.3:+31880354 | MS.gene78682:CDS |
| AATTCTTAACAAGGTTGATT+TGG | 0.330079 | 5.3:+31877098 | MS.gene78682:CDS |
| TTGGGAGAAGAAATATGATA+TGG | 0.330619 | 5.3:+31877874 | MS.gene78682:CDS |
| AACAGAAGATTGTTGAGAAA+TGG | 0.344084 | 5.3:-31874693 | None:intergenic |
| GCTGTGATATTGAATGAGTT+TGG | 0.371555 | 5.3:+31875502 | MS.gene78682:CDS |
| GCTATCTGAAAATATGCTTC+AGG | 0.372809 | 5.3:-31876710 | None:intergenic |
| TTGCACTGTTAAGCATAGTT+TGG | 0.374329 | 5.3:+31875618 | MS.gene78682:CDS |
| TGTGGCTAATCCAGCACCTT+TGG | 0.381484 | 5.3:+31876177 | MS.gene78682:CDS |
| ACTCTCATCACTGGTTATCT+TGG | 0.383465 | 5.3:+31874722 | MS.gene78682:CDS |
| AACCATGGCAGACTCGTATA+TGG | 0.384207 | 5.3:+31877837 | MS.gene78682:intron |
| TTTGGCATCTATTCTTTGGT+TGG | 0.414831 | 5.3:+31876195 | MS.gene78682:CDS |
| TTCTCTGCACAAGCTGCTCA+AGG | 0.418476 | 5.3:-31875648 | None:intergenic |
| TAGGCTAGACCATATATTGC+TGG | 0.419326 | 5.3:+31876144 | MS.gene78682:intron |
| AGAATAGATGCCAAAGGTGC+TGG | 0.420889 | 5.3:-31876187 | None:intergenic |
| TTGGTATCTGCAGAAGGCTC+TGG | 0.429405 | 5.3:+31877117 | MS.gene78682:CDS |
| CAGTAGTTTCCAGCAATATA+TGG | 0.431248 | 5.3:-31876153 | None:intergenic |
| ATGGCTAGAGGAGATTCTTT+GGG | 0.440901 | 5.3:+31877856 | MS.gene78682:CDS |
| AGTGGAAGAAAGAAGAAAAC+AGG | 0.446364 | 5.3:+31880331 | MS.gene78682:CDS |
| TCCAGTCTCACTGATGCATA+TGG | 0.458810 | 5.3:-31877428 | None:intergenic |
| ATCACTGGTTATCTTGGTGC+TGG | 0.459836 | 5.3:+31874728 | MS.gene78682:CDS |
| GAAAGAGCATTGATAAATGA+AGG | 0.462576 | 5.3:+31875541 | MS.gene78682:CDS |
| TCTTTCTTCCACTTCCGAGC+AGG | 0.475644 | 5.3:-31880321 | None:intergenic |
| AGCCACGGTGCTCCTTGAGC+TGG | 0.477134 | 5.3:-31876676 | None:intergenic |
| GTGGTGCAGTTGTTGAAGAA+TGG | 0.477782 | 5.3:+31875569 | MS.gene78682:CDS |
| TCTTTGGTTGGATGAACAGT+TGG | 0.479469 | 5.3:+31876207 | MS.gene78682:CDS |
| GTTGGTGTCACTCTCATCAC+TGG | 0.482192 | 5.3:+31874713 | MS.gene78682:CDS |
| TGGTGCAGTTGTTGAAGAAT+GGG | 0.484968 | 5.3:+31875570 | MS.gene78682:CDS |
| AGATTGTTCCTGCTCGGAAG+TGG | 0.491918 | 5.3:+31880313 | MS.gene78682:CDS |
| GAATGGGTTGAACTTGCTAA+TGG | 0.500533 | 5.3:+31875586 | MS.gene78682:CDS |
| ATTTCTCAACAATCTTCTGT+TGG | 0.503553 | 5.3:+31874695 | MS.gene78682:CDS |
| ACCATATGCATCAGTGAGAC+TGG | 0.507489 | 5.3:+31877427 | MS.gene78682:CDS |
| CATATATTGCTGGAAACTAC+TGG | 0.512907 | 5.3:+31876154 | MS.gene78682:CDS |
| TGGAACAGTTGATCTTGATA+AGG | 0.538502 | 5.3:+31877447 | MS.gene78682:CDS |
| TCTCTGCACAAGCTGCTCAA+GGG | 0.549355 | 5.3:-31875647 | None:intergenic |
| TGAACTCTCAACATGGGAAG+AGG | 0.549391 | 5.3:+31875476 | MS.gene78682:CDS |
| AAATGTTCGCTTCCAGCTCA+AGG | 0.553773 | 5.3:+31876664 | MS.gene78682:CDS |
| TTGATAAATGAAGGGGAAAG+TGG | 0.553774 | 5.3:+31875550 | MS.gene78682:CDS |
| CATATATTGAACTCTCAACA+TGG | 0.555523 | 5.3:+31875469 | MS.gene78682:CDS |
| AGAAGGCTCTGGAGCTCTAG+AGG | 0.581340 | 5.3:+31877128 | MS.gene78682:CDS |
| CATTTAAGACTCCTTTGCAA+CGG | 0.583923 | 5.3:-31877904 | None:intergenic |
| GTTGATTTGGTATCTGCAGA+AGG | 0.585096 | 5.3:+31877111 | MS.gene78682:CDS |
| AAAGAGCATTGATAAATGAA+GGG | 0.594588 | 5.3:+31875542 | MS.gene78682:CDS |
| GGACATTGTAATTCTTAACA+AGG | 0.607377 | 5.3:+31877089 | MS.gene78682:intron |
| AAGAGCATTGATAAATGAAG+GGG | 0.611247 | 5.3:+31875543 | MS.gene78682:CDS |
| TATACGAGATTGTTCCTGCT+CGG | 0.613095 | 5.3:+31880307 | MS.gene78682:CDS |
| ATGGATGTATACCGTTGCAA+AGG | 0.617207 | 5.3:+31877893 | MS.gene78682:CDS |
| TCTTGGTGCTGGCAAATCCA+CGG | 0.620578 | 5.3:+31874739 | MS.gene78682:CDS |
| CTGCAGTATCGTAAGCGTGG+CGG | 0.624449 | 5.3:-31877239 | None:intergenic |
| ATATATTGAACTCTCAACAT+GGG | 0.629606 | 5.3:+31875470 | MS.gene78682:CDS |
| TGTTGAATCTCAACAGCAAG+AGG | 0.636495 | 5.3:-31874653 | None:intergenic |
| TGAATCTCAACAGCAAGAGG+TGG | 0.637466 | 5.3:-31874650 | None:intergenic |
| GCAGACTCGTATATGGCTAG+AGG | 0.641181 | 5.3:+31877844 | MS.gene78682:intron |
| TAACAATGCCTCTAAATGTG+CGG | 0.644611 | 5.3:-31877353 | None:intergenic |
| AGCTTGTGCAGAGAAAAGAA+AGG | 0.645456 | 5.3:+31875656 | MS.gene78682:CDS |
| CAGGAAATGAAGATGAGCCA+CGG | 0.651825 | 5.3:-31876691 | None:intergenic |
| GTTTGGTGAGGAAATTGGAG+TGG | 0.654078 | 5.3:+31875519 | MS.gene78682:CDS |
| AGCTCTAGAGGAACTCGAGG+AGG | 0.659807 | 5.3:+31877140 | MS.gene78682:CDS |
| AACCAAAGAATAGATGCCAA+AGG | 0.660580 | 5.3:-31876193 | None:intergenic |
| TTACTGCAGTATCGTAAGCG+TGG | 0.673945 | 5.3:-31877242 | None:intergenic |
| TGGAGCTCTAGAGGAACTCG+AGG | 0.681621 | 5.3:+31877137 | MS.gene78682:CDS |
| ATTGCTGGAAACTACTGGTG+TGG | 0.682013 | 5.3:+31876159 | MS.gene78682:CDS |
| GATATTGAATGAGTTTGGTG+AGG | 0.685395 | 5.3:+31875507 | MS.gene78682:CDS |
| TTCCAGCTCAAGGAGCACCG+TGG | 0.718846 | 5.3:+31876674 | MS.gene78682:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAAAAAAATCTTAC+AGG | + | chr5.3:31875297-31875316 | MS.gene78682:intron | 10.0% |
| !! | AAAAAAAAAAAAATCTTACA+GGG | + | chr5.3:31875298-31875317 | MS.gene78682:intron | 10.0% |
| !! | ATTAAAACTCAAATATTATA+CGG | - | chr5.3:31880242-31880261 | None:intergenic | 10.0% |
| !! | ATTTAAATAAATTACTTATC+TGG | + | chr5.3:31876342-31876361 | MS.gene78682:intron | 10.0% |
| !! | TTTAAATAAATTACTTATCT+GGG | + | chr5.3:31876343-31876362 | MS.gene78682:intron | 10.0% |
| !!! | ATTAAAAAAACAGAATTTTA+AGG | - | chr5.3:31879210-31879229 | None:intergenic | 10.0% |
| !!! | TTAATTTTTAAATCACTTAT+CGG | + | chr5.3:31880257-31880276 | MS.gene78682:intron | 10.0% |
| !! | ATGAATAAGATAGTATTTAT+AGG | + | chr5.3:31880354-31880373 | MS.gene78682:CDS | 15.0% |
| !! | TAAATCATTTGATTGATATT+TGG | + | chr5.3:31880001-31880020 | MS.gene78682:intron | 15.0% |
| !! | TATTTAGTGTACTATTTATA+AGG | + | chr5.3:31878063-31878082 | MS.gene78682:intron | 15.0% |
| !! | TATTTATAAGAGATTCAAAA+GGG | - | chr5.3:31876057-31876076 | None:intergenic | 15.0% |
| !! | TGAGATGTATATAAAAATAT+TGG | + | chr5.3:31878981-31879000 | MS.gene78682:intron | 15.0% |
| !! | TTATATACATAAGCAATAAT+AGG | - | chr5.3:31875805-31875824 | None:intergenic | 15.0% |
| !! | TTTACTTATATATTTCGAAA+AGG | + | chr5.3:31879930-31879949 | MS.gene78682:intron | 15.0% |
| !!! | AAGTATTTTTTAATTGGATT+TGG | + | chr5.3:31874988-31875007 | MS.gene78682:intron | 15.0% |
| !!! | AATTAATTCATTTGTTGTTT+GGG | + | chr5.3:31878182-31878201 | MS.gene78682:intron | 15.0% |
| !!! | TAGTACAATTAAACATTTTT+AGG | + | chr5.3:31876108-31876127 | MS.gene78682:intron | 15.0% |
| !!! | TCATTTTCTTTTTTGTTATT+GGG | + | chr5.3:31874829-31874848 | MS.gene78682:intron | 15.0% |
| !!! | TTCATTTTCTTTTTTGTTAT+TGG | + | chr5.3:31874828-31874847 | MS.gene78682:intron | 15.0% |
| !! | AAAGAAAATGAAAGTGAAAA+AGG | - | chr5.3:31874820-31874839 | None:intergenic | 20.0% |
| !! | ACCTGAAAAACATTTATAAA+TGG | + | chr5.3:31879171-31879190 | MS.gene78682:intron | 20.0% |
| !! | AGTTAATATTGTGGTTTATT+TGG | + | chr5.3:31879883-31879902 | MS.gene78682:intron | 20.0% |
| !! | ATTTATAAGAGATTCAAAAG+GGG | - | chr5.3:31876056-31876075 | None:intergenic | 20.0% |
| !! | CAAAAAACACTATAATTGTA+AGG | + | chr5.3:31875329-31875348 | MS.gene78682:intron | 20.0% |
| !! | CATGATATAAAATACAAGTT+AGG | - | chr5.3:31877813-31877832 | None:intergenic | 20.0% |
| !! | CCTGAAAAACATTTATAAAT+GGG | + | chr5.3:31879172-31879191 | MS.gene78682:intron | 20.0% |
| !! | CTATTTATAAGAGATTCAAA+AGG | - | chr5.3:31876058-31876077 | None:intergenic | 20.0% |
| !! | TAAATACTATCTTAGGATTT+GGG | - | chr5.3:31879249-31879268 | None:intergenic | 20.0% |
| !! | TAAGATAAATTAGACATCAT+GGG | + | chr5.3:31879667-31879686 | MS.gene78682:intron | 20.0% |
| !! | TATAGAAAGGGAAAATTAAT+GGG | - | chr5.3:31874768-31874787 | None:intergenic | 20.0% |
| !! | TGTATATAAAAATATTGGCA+TGG | + | chr5.3:31878986-31879005 | MS.gene78682:intron | 20.0% |
| !! | TGTCTAATTTATCTTAAACT+TGG | - | chr5.3:31879663-31879682 | None:intergenic | 20.0% |
| !! | TTAAGATAAATTAGACATCA+TGG | + | chr5.3:31879666-31879685 | MS.gene78682:intron | 20.0% |
| !! | TTATAGAAAGGGAAAATTAA+TGG | - | chr5.3:31874769-31874788 | None:intergenic | 20.0% |
| !! | TTTATATCATGTTTAAACCA+TGG | + | chr5.3:31877822-31877841 | MS.gene78682:intron | 20.0% |
| !!! | CAATTAATTCATTTGTTGTT+TGG | + | chr5.3:31878181-31878200 | MS.gene78682:intron | 20.0% |
| !!! | CAGTGTAAGTATTTTTTAAT+TGG | + | chr5.3:31874982-31875001 | MS.gene78682:intron | 20.0% |
| !!! | CTTACAATTATAGTGTTTTT+TGG | - | chr5.3:31875331-31875350 | None:intergenic | 20.0% |
| !!! | CTTCATATATCTTTTTTTTG+TGG | - | chr5.3:31876846-31876865 | None:intergenic | 20.0% |
| !!! | GCTATATGTTGATTTTAATT+AGG | + | chr5.3:31878507-31878526 | MS.gene78682:intron | 20.0% |
| !!! | GCTTTTATCAACATATAAAA+AGG | - | chr5.3:31876554-31876573 | None:intergenic | 20.0% |
| !!! | TTATTGGTTTAAATCATTGT+GGG | + | chr5.3:31879741-31879760 | MS.gene78682:intron | 20.0% |
| !!! | TTTGTTTTGAGAGTTTATAT+TGG | + | chr5.3:31879136-31879155 | MS.gene78682:intron | 20.0% |
| !!! | TTTTCATATAAACTATAAGC+TGG | + | chr5.3:31875850-31875869 | MS.gene78682:intron | 20.0% |
| !!! | TTTTTTTGTTTTTTGAGCAA+TGG | + | chr5.3:31876293-31876312 | MS.gene78682:intron | 20.0% |
| ! | AAACTCAAATATTATACGGA+AGG | - | chr5.3:31880238-31880257 | None:intergenic | 25.0% |
| ! | AAACTTTGTTAAATTGCCTA+TGG | + | chr5.3:31878119-31878138 | MS.gene78682:intron | 25.0% |
| ! | AAATACTATCTTAGGATTTG+GGG | - | chr5.3:31879248-31879267 | None:intergenic | 25.0% |
| ! | AACTCAAATATTATACGGAA+GGG | - | chr5.3:31880237-31880256 | None:intergenic | 25.0% |
| ! | AAGAAATATTGTTACAGACT+AGG | - | chr5.3:31877007-31877026 | None:intergenic | 25.0% |
| ! | AATTCTGTTAGAATGATTCT+CGG | + | chr5.3:31878274-31878293 | MS.gene78682:intron | 25.0% |
| ! | ACATAAGCAATAATAGGATA+AGG | - | chr5.3:31875799-31875818 | None:intergenic | 25.0% |
| ! | ACTATCTATTCTTACACATA+TGG | - | chr5.3:31879107-31879126 | None:intergenic | 25.0% |
| ! | ACTATTATTTCAACAAGCTA+TGG | - | chr5.3:31874863-31874882 | None:intergenic | 25.0% |
| ! | ACTCCATATTACAAAATCAT+TGG | - | chr5.3:31875414-31875433 | None:intergenic | 25.0% |
| ! | AGTCTTCATTAGATGTAATA+TGG | + | chr5.3:31879362-31879381 | MS.gene78682:intron | 25.0% |
| ! | AGTTATATCAGAAAAGCTAA+AGG | - | chr5.3:31878245-31878264 | None:intergenic | 25.0% |
| ! | ATATATTGAACTCTCAACAT+GGG | + | chr5.3:31875470-31875489 | MS.gene78682:CDS | 25.0% |
| ! | ATCAAACCTAAAACCAAAAT+TGG | - | chr5.3:31880132-31880151 | None:intergenic | 25.0% |
| ! | ATTGTGCGTTATATATTAAC+TGG | + | chr5.3:31876743-31876762 | MS.gene78682:intron | 25.0% |
| ! | CAAATATATCAAACAAAGAG+AGG | - | chr5.3:31879563-31879582 | None:intergenic | 25.0% |
| ! | CATAAGCAATAATAGGATAA+GGG | - | chr5.3:31875798-31875817 | None:intergenic | 25.0% |
| ! | CCAGTTAGAAATTATAGAAA+GGG | - | chr5.3:31874780-31874799 | None:intergenic | 25.0% |
| ! | CCTTTCTATAATTTCTAACT+GGG | + | chr5.3:31874778-31874797 | MS.gene78682:intron | 25.0% |
| ! | CTAAATACTATCTTAGGATT+TGG | - | chr5.3:31879250-31879269 | None:intergenic | 25.0% |
| ! | CTAAATTATCAGCATAGATA+GGG | - | chr5.3:31876938-31876957 | None:intergenic | 25.0% |
| ! | CTATTATTTCAACAAGCTAT+GGG | - | chr5.3:31874862-31874881 | None:intergenic | 25.0% |
| ! | GAAAAACATTTATAAATGGG+AGG | + | chr5.3:31879175-31879194 | MS.gene78682:intron | 25.0% |
| ! | GACAACAATTTAATGAGAAA+AGG | - | chr5.3:31876796-31876815 | None:intergenic | 25.0% |
| ! | GCTGAAAATAAAAACAAAAC+AGG | - | chr5.3:31877330-31877349 | None:intergenic | 25.0% |
| ! | TAAATTATCAGCATAGATAG+GGG | - | chr5.3:31876937-31876956 | None:intergenic | 25.0% |
| ! | TAAGGTCTAAATACTATCTT+AGG | - | chr5.3:31879256-31879275 | None:intergenic | 25.0% |
| ! | TCATCCATTAATGATACTTA+CGG | - | chr5.3:31876263-31876282 | None:intergenic | 25.0% |
| ! | TCTTTAATTAGAGATGAATC+TGG | - | chr5.3:31878604-31878623 | None:intergenic | 25.0% |
| ! | TTATAAATAGATGCAGTGTT+CGG | + | chr5.3:31876068-31876087 | MS.gene78682:intron | 25.0% |
| ! | TTCTAGTATAACAGTTACAA+AGG | - | chr5.3:31875373-31875392 | None:intergenic | 25.0% |
| !! | AAATGTAAAATCTTTGGTGT+GGG | + | chr5.3:31879325-31879344 | MS.gene78682:intron | 25.0% |
| !! | AATTCTTAACAAGGTTGATT+TGG | + | chr5.3:31877098-31877117 | MS.gene78682:CDS | 25.0% |
| !! | AGTTAGATGAAGTATCAATT+AGG | + | chr5.3:31879975-31879994 | MS.gene78682:intron | 25.0% |
| !! | ATATTTTCAGATAGCATTTG+CGG | + | chr5.3:31876718-31876737 | MS.gene78682:CDS | 25.0% |
| !! | CCCATTTATAAATGTTTTTC+AGG | - | chr5.3:31879175-31879194 | None:intergenic | 25.0% |
| !! | TCTTGTTAATTTTGTGATAG+TGG | + | chr5.3:31876521-31876540 | MS.gene78682:intron | 25.0% |
| !! | TTTAGGTATTTTGTGTTTGT+AGG | + | chr5.3:31876125-31876144 | MS.gene78682:intron | 25.0% |
| !!! | AAAAACAGAATTTTAAGGCA+AGG | - | chr5.3:31879205-31879224 | None:intergenic | 25.0% |
| !!! | AAAACAGAATTTTAAGGCAA+GGG | - | chr5.3:31879204-31879223 | None:intergenic | 25.0% |
| !!! | AAAGAGCATTGATAAATGAA+GGG | + | chr5.3:31875542-31875561 | MS.gene78682:CDS | 25.0% |
| !!! | ATTTATTTCTATAAGCTCTC+TGG | - | chr5.3:31875890-31875909 | None:intergenic | 25.0% |
| !!! | CTTATTGGTTTAAATCATTG+TGG | + | chr5.3:31879740-31879759 | MS.gene78682:intron | 25.0% |
| !!! | TAATACATAGATGGTGTTAT+TGG | - | chr5.3:31879533-31879552 | None:intergenic | 25.0% |
| !!! | TTTATTTCTATAAGCTCTCT+GGG | - | chr5.3:31875889-31875908 | None:intergenic | 25.0% |
| AAAACAAAACAGGTAAACTG+CGG | - | chr5.3:31877320-31877339 | None:intergenic | 30.0% | |
| AACAGAAGATTGTTGAGAAA+TGG | - | chr5.3:31874696-31874715 | None:intergenic | 30.0% | |
| AACAGTATCATTTGTTTGAC+AGG | - | chr5.3:31876412-31876431 | None:intergenic | 30.0% | |
| AATATTGTTACAGACTAGGT+AGG | - | chr5.3:31877003-31877022 | None:intergenic | 30.0% | |
| AATTAAGTTTGCATTCGCAT+TGG | + | chr5.3:31878015-31878034 | MS.gene78682:intron | 30.0% | |
| ACAGTATCATTTGTTTGACA+GGG | - | chr5.3:31876411-31876430 | None:intergenic | 30.0% | |
| ACTAAAAAGCTTCATGATAG+TGG | + | chr5.3:31877397-31877416 | MS.gene78682:CDS | 30.0% | |
| ACTCAAATATTATACGGAAG+GGG | - | chr5.3:31880236-31880255 | None:intergenic | 30.0% | |
| AGTAGAGTAACAATTGAGTT+TGG | + | chr5.3:31879434-31879453 | MS.gene78682:intron | 30.0% | |
| AGTATGCTAAAAGAGAAACA+AGG | + | chr5.3:31878633-31878652 | MS.gene78682:intron | 30.0% | |
| ATATTGTTACAGACTAGGTA+GGG | - | chr5.3:31877002-31877021 | None:intergenic | 30.0% | |
| ATTGTCCAAGAAATAGTTCT+TGG | + | chr5.3:31876453-31876472 | MS.gene78682:intron | 30.0% | |
| ATTTAGTCAAAAAGATCCCT+TGG | + | chr5.3:31878672-31878691 | MS.gene78682:intron | 30.0% | |
| ATTTCTCAACAATCTTCTGT+TGG | + | chr5.3:31874695-31874714 | MS.gene78682:CDS | 30.0% | |
| CAAATGTAAAATCTTTGGTG+TGG | + | chr5.3:31879324-31879343 | MS.gene78682:intron | 30.0% | |
| CATATAGCAATACCTATTGA+AGG | - | chr5.3:31878495-31878514 | None:intergenic | 30.0% | |
| CATATATTGAACTCTCAACA+TGG | + | chr5.3:31875469-31875488 | MS.gene78682:CDS | 30.0% | |
| CCCAGTTAGAAATTATAGAA+AGG | - | chr5.3:31874781-31874800 | None:intergenic | 30.0% | |
| CCCTTTCTATAATTTCTAAC+TGG | + | chr5.3:31874777-31874796 | MS.gene78682:intron | 30.0% | |
| CCTAAATTATCAGCATAGAT+AGG | - | chr5.3:31876939-31876958 | None:intergenic | 30.0% | |
| CCTATCTATGCTGATAATTT+AGG | + | chr5.3:31876936-31876955 | MS.gene78682:intron | 30.0% | |
| CGCACTAGAAATTTAAACAT+TGG | + | chr5.3:31875710-31875729 | MS.gene78682:intron | 30.0% | |
| CGCTTCAAATGTAAAATCTT+TGG | + | chr5.3:31879319-31879338 | MS.gene78682:intron | 30.0% | |
| GAAAACTCACATACAAGTTA+GGG | - | chr5.3:31875234-31875253 | None:intergenic | 30.0% | |
| GGACATTGTAATTCTTAACA+AGG | + | chr5.3:31877089-31877108 | MS.gene78682:intron | 30.0% | |
| GGAGAATGTTAATACATAGA+TGG | - | chr5.3:31879542-31879561 | None:intergenic | 30.0% | |
| GTTGTAGAATCTACAATCTA+GGG | - | chr5.3:31878162-31878181 | None:intergenic | 30.0% | |
| TACTAAGCTATTCCTTCAAT+AGG | + | chr5.3:31878480-31878499 | MS.gene78682:intron | 30.0% | |
| TACTTGATTAGAAGCTATAC+AGG | - | chr5.3:31877544-31877563 | None:intergenic | 30.0% | |
| TAGAAAATGCCGAAATTGTT+AGG | + | chr5.3:31875187-31875206 | MS.gene78682:intron | 30.0% | |
| TCATTTAAGTGAAGCAAAAG+CGG | - | chr5.3:31877676-31877695 | None:intergenic | 30.0% | |
| TCTAATACTCACTCTCTTAT+TGG | + | chr5.3:31879725-31879744 | MS.gene78682:intron | 30.0% | |
| TCTAGTTAAGTTCGAACTTA+TGG | - | chr5.3:31875171-31875190 | None:intergenic | 30.0% | |
| TGAAAACTCACATACAAGTT+AGG | - | chr5.3:31875235-31875254 | None:intergenic | 30.0% | |
| TGCATTTAGTGTTAGGAAAA+TGG | + | chr5.3:31877600-31877619 | MS.gene78682:intron | 30.0% | |
| TGTTGTAGAATCTACAATCT+AGG | - | chr5.3:31878163-31878182 | None:intergenic | 30.0% | |
| TTAGAAGCTATACAGGAAAA+AGG | - | chr5.3:31877537-31877556 | None:intergenic | 30.0% | |
| TTGAAGGAATAGCTTAGTAT+AGG | - | chr5.3:31878479-31878498 | None:intergenic | 30.0% | |
| TTGGACTCATAATTACACTT+AGG | + | chr5.3:31875729-31875748 | MS.gene78682:intron | 30.0% | |
| TTGGGAGAAGAAATATGATA+TGG | + | chr5.3:31877874-31877893 | MS.gene78682:CDS | 30.0% | |
| TTTAAAAATCTGGTTGGACA+TGG | + | chr5.3:31879488-31879507 | MS.gene78682:intron | 30.0% | |
| TTTGGCAAAACAAAATCTTG+TGG | + | chr5.3:31879901-31879920 | MS.gene78682:intron | 30.0% | |
| TTTGTTGAAGAAGCCAAAAT+TGG | - | chr5.3:31880166-31880185 | None:intergenic | 30.0% | |
| ! | ACATTTTATAGTACCTGTCA+TGG | + | chr5.3:31876478-31876497 | MS.gene78682:intron | 30.0% |
| ! | AGACCTTATTTAAGATCTCT+TGG | + | chr5.3:31879268-31879287 | MS.gene78682:intron | 30.0% |
| ! | CAACACTTTAAAAATCTGGT+TGG | + | chr5.3:31879482-31879501 | MS.gene78682:intron | 30.0% |
| ! | CTAGCAACACTTTAAAAATC+TGG | + | chr5.3:31879478-31879497 | MS.gene78682:intron | 30.0% |
| ! | CTTTACAGTTATAGCGTTTT+TGG | + | chr5.3:31874952-31874971 | MS.gene78682:intron | 30.0% |
| ! | TATTTCTTGGACAATTTTGC+GGG | - | chr5.3:31876448-31876467 | None:intergenic | 30.0% |
| ! | TTTTTGGATGATAGATGAAG+TGG | - | chr5.3:31875269-31875288 | None:intergenic | 30.0% |
| !! | AAGAGCATTGATAAATGAAG+GGG | + | chr5.3:31875543-31875562 | MS.gene78682:CDS | 30.0% |
| !! | CTATTTCTTGGACAATTTTG+CGG | - | chr5.3:31876449-31876468 | None:intergenic | 30.0% |
| !! | GAAAGAGCATTGATAAATGA+AGG | + | chr5.3:31875541-31875560 | MS.gene78682:CDS | 30.0% |
| !! | TGTAATATGGAGTTCTGAAT+TGG | + | chr5.3:31875421-31875440 | MS.gene78682:intron | 30.0% |
| !!! | TCTTTTTCAAACAGTAACAG+TGG | - | chr5.3:31878043-31878062 | None:intergenic | 30.0% |
| AAATTGCAAACCCTTATACG+AGG | - | chr5.3:31878889-31878908 | None:intergenic | 35.0% | |
| AACCAAAGAATAGATGCCAA+AGG | - | chr5.3:31876196-31876215 | None:intergenic | 35.0% | |
| AACCGTCTAACTGTATTATC+TGG | - | chr5.3:31878399-31878418 | None:intergenic | 35.0% | |
| AAGCACTTGTGAGATTCTTA+GGG | - | chr5.3:31875958-31875977 | None:intergenic | 35.0% | |
| AATATTAACTACCCATACCG+AGG | - | chr5.3:31879873-31879892 | None:intergenic | 35.0% | |
| ACTCTACTTATAACCAGCTA+AGG | - | chr5.3:31879422-31879441 | None:intergenic | 35.0% | |
| AGTGGAAGAAAGAAGAAAAC+AGG | + | chr5.3:31880331-31880350 | MS.gene78682:CDS | 35.0% | |
| ATTACAAAATCATTGGCCGA+GGG | - | chr5.3:31875407-31875426 | None:intergenic | 35.0% | |
| CAGTAGTTTCCAGCAATATA+TGG | - | chr5.3:31876156-31876175 | None:intergenic | 35.0% | |
| CATACTTCAGTAATCTTGAC+AGG | + | chr5.3:31878095-31878114 | MS.gene78682:intron | 35.0% | |
| CATATATTGCTGGAAACTAC+TGG | + | chr5.3:31876154-31876173 | MS.gene78682:CDS | 35.0% | |
| CTACGAGTGTGTTAATGTTA+TGG | - | chr5.3:31877170-31877189 | None:intergenic | 35.0% | |
| CTCAAATATTATACGGAAGG+GGG | - | chr5.3:31880235-31880254 | None:intergenic | 35.0% | |
| CTGTCAAGATTACTGAAGTA+TGG | - | chr5.3:31878097-31878116 | None:intergenic | 35.0% | |
| GCTATCTGAAAATATGCTTC+AGG | - | chr5.3:31876713-31876732 | None:intergenic | 35.0% | |
| GCTGTGATATTGAATGAGTT+TGG | + | chr5.3:31875502-31875521 | MS.gene78682:CDS | 35.0% | |
| GGTATGGGTAGTTAATATTG+TGG | + | chr5.3:31879874-31879893 | MS.gene78682:intron | 35.0% | |
| GGTCCAAGAGATCTTAAATA+AGG | - | chr5.3:31879274-31879293 | None:intergenic | 35.0% | |
| GTCACCGTAAGTATCATTAA+TGG | + | chr5.3:31876256-31876275 | MS.gene78682:intron | 35.0% | |
| TAACAATGCCTCTAAATGTG+CGG | - | chr5.3:31877356-31877375 | None:intergenic | 35.0% | |
| TAAGCACTTGTGAGATTCTT+AGG | - | chr5.3:31875959-31875978 | None:intergenic | 35.0% | |
| TATTACAAAATCATTGGCCG+AGG | - | chr5.3:31875408-31875427 | None:intergenic | 35.0% | |
| TCATGCGCTATCAATTAACT+GGG | - | chr5.3:31878964-31878983 | None:intergenic | 35.0% | |
| TCTATCAAACTCTCATCACA+AGG | - | chr5.3:31878829-31878848 | None:intergenic | 35.0% | |
| TGATGAATTGCATACTTTGC+AGG | + | chr5.3:31877937-31877956 | MS.gene78682:CDS | 35.0% | |
| TGCCAGATAATACAGTTAGA+CGG | + | chr5.3:31878394-31878413 | MS.gene78682:intron | 35.0% | |
| TGCGTTATGCATTTAGTGTT+AGG | + | chr5.3:31877593-31877612 | MS.gene78682:intron | 35.0% | |
| TGGAACAGTTGATCTTGATA+AGG | + | chr5.3:31877447-31877466 | MS.gene78682:CDS | 35.0% | |
| TGTGATCAGAACGATATCAA+AGG | - | chr5.3:31878451-31878470 | None:intergenic | 35.0% | |
| TTGATAAATGAAGGGGAAAG+TGG | + | chr5.3:31875550-31875569 | MS.gene78682:CDS | 35.0% | |
| TTGCACTGTTAAGCATAGTT+TGG | + | chr5.3:31875618-31875637 | MS.gene78682:CDS | 35.0% | |
| TTTGGCATCTATTCTTTGGT+TGG | + | chr5.3:31876195-31876214 | MS.gene78682:CDS | 35.0% | |
| ! | AATGAGTTTGGTGAGGAAAT+TGG | + | chr5.3:31875514-31875533 | MS.gene78682:CDS | 35.0% |
| ! | AATTGTGTTTCTACCGAAGT+AGG | + | chr5.3:31876628-31876647 | MS.gene78682:intron | 35.0% |
| ! | AATTTTACATGCCTAACCAC+TGG | - | chr5.3:31877980-31877999 | None:intergenic | 35.0% |
| ! | ATAATGTTGCTGCTTCTTTC+AGG | + | chr5.3:31877068-31877087 | MS.gene78682:intron | 35.0% |
| ! | ATTAGTTTGAATGCCATGAC+AGG | - | chr5.3:31876494-31876513 | None:intergenic | 35.0% |
| ! | CAATCTTGAACGTTTTCACA+TGG | - | chr5.3:31879079-31879098 | None:intergenic | 35.0% |
| ! | CATTTAAGACTCCTTTGCAA+CGG | - | chr5.3:31877907-31877926 | None:intergenic | 35.0% |
| ! | CGGCCAATGATTTTGTAATA+TGG | + | chr5.3:31875408-31875427 | MS.gene78682:intron | 35.0% |
| ! | GATATTGAATGAGTTTGGTG+AGG | + | chr5.3:31875507-31875526 | MS.gene78682:CDS | 35.0% |
| ! | TGTCTCCAAGAACTATTTCT+TGG | - | chr5.3:31876461-31876480 | None:intergenic | 35.0% |
| ! | TTGCTAGCTCTTGGAATTTA+GGG | - | chr5.3:31879465-31879484 | None:intergenic | 35.0% |
| !! | CTTGTATGTGAGTTTTCAAG+TGG | + | chr5.3:31875237-31875256 | MS.gene78682:intron | 35.0% |
| !! | GCACTCACTCTTTTATTTGA+TGG | - | chr5.3:31879818-31879837 | None:intergenic | 35.0% |
| !! | TTTAAAGTGTTGCTAGCTCT+TGG | - | chr5.3:31879474-31879493 | None:intergenic | 35.0% |
| !!! | AGTGTGCCAATTTTGGTTTT+AGG | + | chr5.3:31880123-31880142 | MS.gene78682:intron | 35.0% |
| !!! | GTTTTAGGTTTGATTCTACC+CGG | + | chr5.3:31880138-31880157 | MS.gene78682:intron | 35.0% |
| AAATATTGGCATGGTAGCAG+TGG | + | chr5.3:31878995-31879014 | MS.gene78682:intron | 40.0% | |
| AACAACGATTCCTGCTAACA+CGG | + | chr5.3:31877635-31877654 | MS.gene78682:intron | 40.0% | |
| AACATCCTCTTGCAAATGCA+AGG | + | chr5.3:31878760-31878779 | MS.gene78682:intron | 40.0% | |
| ACCAAAATTGGCACACTCTA+AGG | - | chr5.3:31880120-31880139 | None:intergenic | 40.0% | |
| ACGTCAAGGACTAAAAGCAA+CGG | - | chr5.3:31875033-31875052 | None:intergenic | 40.0% | |
| ACTTATAACCAGCTAAGGCA+AGG | - | chr5.3:31879417-31879436 | None:intergenic | 40.0% | |
| AGCTTGTGCAGAGAAAAGAA+AGG | + | chr5.3:31875656-31875675 | MS.gene78682:CDS | 40.0% | |
| AGGTCCATTGCATAATGTTG+CGG | + | chr5.3:31876014-31876033 | MS.gene78682:intron | 40.0% | |
| ATACAGTTAGACGGTTACAC+AGG | + | chr5.3:31878403-31878422 | MS.gene78682:intron | 40.0% | |
| ATCACTTATCGGTGAAATCC+TGG | + | chr5.3:31880268-31880287 | MS.gene78682:intron | 40.0% | |
| ATCATTGTGGGTCTACACAT+TGG | + | chr5.3:31879753-31879772 | MS.gene78682:intron | 40.0% | |
| ATGGATGTATACCGTTGCAA+AGG | + | chr5.3:31877893-31877912 | MS.gene78682:CDS | 40.0% | |
| ATGGCTAGAGGAGATTCTTT+GGG | + | chr5.3:31877856-31877875 | MS.gene78682:CDS | 40.0% | |
| CACCTTTGGCATCTATTCTT+TGG | + | chr5.3:31876191-31876210 | MS.gene78682:CDS | 40.0% | |
| CATAGATAGGGGAAGATACT+TGG | - | chr5.3:31876926-31876945 | None:intergenic | 40.0% | |
| CTCAATATAATCGCAACACG+CGG | - | chr5.3:31875075-31875094 | None:intergenic | 40.0% | |
| CTCATGCGCTATCAATTAAC+TGG | - | chr5.3:31878965-31878984 | None:intergenic | 40.0% | |
| CTGAAAGTAGACAGAACCAT+AGG | - | chr5.3:31878138-31878157 | None:intergenic | 40.0% | |
| CTTATAACCAGCTAAGGCAA+GGG | - | chr5.3:31879416-31879435 | None:intergenic | 40.0% | |
| GAAATAAATGCAGCCCACTT+GGG | + | chr5.3:31880069-31880088 | MS.gene78682:intron | 40.0% | |
| GAAATAGAACCCACACAAAG+TGG | + | chr5.3:31879775-31879794 | MS.gene78682:intron | 40.0% | |
| GAGGTGAAGAGTCTATCTAT+AGG | + | chr5.3:31878307-31878326 | MS.gene78682:intron | 40.0% | |
| GATGAGAGTTTGATAGAGCA+AGG | + | chr5.3:31878832-31878851 | MS.gene78682:intron | 40.0% | |
| GGCATTCAGCCTAACAATTT+CGG | - | chr5.3:31875199-31875218 | None:intergenic | 40.0% | |
| TACAGTTAGACGGTTACACA+GGG | + | chr5.3:31878404-31878423 | MS.gene78682:intron | 40.0% | |
| TAGGCTAGACCATATATTGC+TGG | + | chr5.3:31876144-31876163 | MS.gene78682:intron | 40.0% | |
| TAGTCACACACCTCGTATAA+GGG | + | chr5.3:31878876-31878895 | MS.gene78682:intron | 40.0% | |
| TATACGAGATTGTTCCTGCT+CGG | + | chr5.3:31880307-31880326 | MS.gene78682:CDS | 40.0% | |
| TATGGCTAGAGGAGATTCTT+TGG | + | chr5.3:31877855-31877874 | MS.gene78682:CDS | 40.0% | |
| TCAGATAAGGTAATCCAAGC+AGG | + | chr5.3:31875994-31876013 | MS.gene78682:intron | 40.0% | |
| TCTTTGGTTGGATGAACAGT+TGG | + | chr5.3:31876207-31876226 | MS.gene78682:CDS | 40.0% | |
| TGAAATAAATGCAGCCCACT+TGG | + | chr5.3:31880068-31880087 | MS.gene78682:intron | 40.0% | |
| TGAACCGCAACATTATGCAA+TGG | - | chr5.3:31876021-31876040 | None:intergenic | 40.0% | |
| TGGTGCAGTTGTTGAAGAAT+GGG | + | chr5.3:31875570-31875589 | MS.gene78682:CDS | 40.0% | |
| TGTTGAATCTCAACAGCAAG+AGG | - | chr5.3:31874656-31874675 | None:intergenic | 40.0% | |
| TTAGACATCATGGGTATGAG+TGG | + | chr5.3:31879676-31879695 | MS.gene78682:intron | 40.0% | |
| TTGGCATCTACTACCTACTT+CGG | - | chr5.3:31876644-31876663 | None:intergenic | 40.0% | |
| ! | ACAGACTAGGTAGGGTATTA+TGG | - | chr5.3:31876994-31877013 | None:intergenic | 40.0% |
| ! | ACCTTAGAGTGTGCCAATTT+TGG | + | chr5.3:31880116-31880135 | MS.gene78682:intron | 40.0% |
| ! | ACTCTCATCACTGGTTATCT+TGG | + | chr5.3:31874722-31874741 | MS.gene78682:CDS | 40.0% |
| ! | AGAACAAAGCATTCTCTGCT+AGG | - | chr5.3:31877739-31877758 | None:intergenic | 40.0% |
| ! | AGCTCTTGGAATTTAGGGTT+TGG | - | chr5.3:31879460-31879479 | None:intergenic | 40.0% |
| ! | CTAGTGGATAAGCTCAGATA+AGG | + | chr5.3:31875981-31876000 | MS.gene78682:intron | 40.0% |
| ! | GATTCTCGGTTAGTTACATG+AGG | + | chr5.3:31878288-31878307 | MS.gene78682:intron | 40.0% |
| ! | GTTGCTAGCTCTTGGAATTT+AGG | - | chr5.3:31879466-31879485 | None:intergenic | 40.0% |
| !! | AGCAGTGGTGTTACTTTGTT+AGG | + | chr5.3:31879010-31879029 | MS.gene78682:intron | 40.0% |
| !! | GAATGGGTTGAACTTGCTAA+TGG | + | chr5.3:31875586-31875605 | MS.gene78682:CDS | 40.0% |
| !! | GGAAAATTAATGGGTTACCG+TGG | - | chr5.3:31874759-31874778 | None:intergenic | 40.0% |
| !! | GTTGATTTGGTATCTGCAGA+AGG | + | chr5.3:31877111-31877130 | MS.gene78682:CDS | 40.0% |
| !!! | ACAGAATTTTAAGGCAAGGG+AGG | - | chr5.3:31879201-31879220 | None:intergenic | 40.0% |
| AAATGTTCGCTTCCAGCTCA+AGG | + | chr5.3:31876664-31876683 | MS.gene78682:CDS | 45.0% | |
| AACCATGGCAGACTCGTATA+TGG | + | chr5.3:31877837-31877856 | MS.gene78682:intron | 45.0% | |
| AAGAAGCCAAAATTGGCACC+GGG | - | chr5.3:31880159-31880178 | None:intergenic | 45.0% | |
| AAGTTAGGGATCCCAAGTCA+TGG | - | chr5.3:31875220-31875239 | None:intergenic | 45.0% | |
| AATCACGCACTTGTGTACTG+AGG | - | chr5.3:31876586-31876605 | None:intergenic | 45.0% | |
| ACAACGATTCCTGCTAACAC+GGG | + | chr5.3:31877636-31877655 | MS.gene78682:intron | 45.0% | |
| ACCATATGCATCAGTGAGAC+TGG | + | chr5.3:31877427-31877446 | MS.gene78682:CDS | 45.0% | |
| ACTCCCAACAGTTATGCCAA+GGG | - | chr5.3:31878691-31878710 | None:intergenic | 45.0% | |
| AGATCCCTTGGCATAACTGT+TGG | + | chr5.3:31878684-31878703 | MS.gene78682:intron | 45.0% | |
| AGATTCTTAGGGAGAGCTCA+TGG | - | chr5.3:31875947-31875966 | None:intergenic | 45.0% | |
| AGTCCTTGACGTCAGCTTAT+TGG | + | chr5.3:31875041-31875060 | MS.gene78682:intron | 45.0% | |
| ATAAGATCCGTCTTCACCAG+TGG | + | chr5.3:31877961-31877980 | MS.gene78682:intron | 45.0% | |
| ATAGAACCCACACAAAGTGG+TGG | + | chr5.3:31879778-31879797 | MS.gene78682:intron | 45.0% | |
| ATTGCTGGAAACTACTGGTG+TGG | + | chr5.3:31876159-31876178 | MS.gene78682:CDS | 45.0% | |
| CAGGAAATGAAGATGAGCCA+CGG | - | chr5.3:31876694-31876713 | None:intergenic | 45.0% | |
| CATTATGCAATGGACCTGCT+TGG | - | chr5.3:31876011-31876030 | None:intergenic | 45.0% | |
| CCTCTTGCAAATGCAAGGTA+AGG | + | chr5.3:31878765-31878784 | MS.gene78682:intron | 45.0% | |
| CCTTACCTTGCATTTGCAAG+AGG | - | chr5.3:31878768-31878787 | None:intergenic | 45.0% | |
| CGACAATGTCAAACCTGTCA+CGG | - | chr5.3:31878803-31878822 | None:intergenic | 45.0% | |
| CTAGTCACACACCTCGTATA+AGG | + | chr5.3:31878875-31878894 | MS.gene78682:intron | 45.0% | |
| CTCACAAGTGCTTATGCTAG+TGG | + | chr5.3:31875965-31875984 | MS.gene78682:intron | 45.0% | |
| CTCTTGGACCACCAGTTATA+GGG | + | chr5.3:31879284-31879303 | MS.gene78682:intron | 45.0% | |
| GAAGAAGCCAAAATTGGCAC+CGG | - | chr5.3:31880160-31880179 | None:intergenic | 45.0% | |
| GATCCCTTGGCATAACTGTT+GGG | + | chr5.3:31878685-31878704 | MS.gene78682:intron | 45.0% | |
| GCATTCTCTGCTAGGCATTA+CGG | - | chr5.3:31877731-31877750 | None:intergenic | 45.0% | |
| GGACTAAAAGCAACGGAGTT+TGG | - | chr5.3:31875026-31875045 | None:intergenic | 45.0% | |
| GTCCTTGACGTCAGCTTATT+GGG | + | chr5.3:31875042-31875061 | MS.gene78682:intron | 45.0% | |
| GTGGTGCAGTTGTTGAAGAA+TGG | + | chr5.3:31875569-31875588 | MS.gene78682:CDS | 45.0% | |
| TAAACTGCGGTCATGAAGGT+GGG | - | chr5.3:31877307-31877326 | None:intergenic | 45.0% | |
| TAGAACCCACACAAAGTGGT+GGG | + | chr5.3:31879779-31879798 | MS.gene78682:intron | 45.0% | |
| TAGGCTGAATGCCATGACTT+GGG | + | chr5.3:31875206-31875225 | MS.gene78682:intron | 45.0% | |
| TATGTCCCACCACTTTGTGT+GGG | - | chr5.3:31879787-31879806 | None:intergenic | 45.0% | |
| TATTTATGCCCCGTGTTAGC+AGG | - | chr5.3:31877648-31877667 | None:intergenic | 45.0% | |
| TCCAGTCTCACTGATGCATA+TGG | - | chr5.3:31877431-31877450 | None:intergenic | 45.0% | |
| TCTCTTGGACCACCAGTTAT+AGG | + | chr5.3:31879283-31879302 | MS.gene78682:intron | 45.0% | |
| TGAACTCTCAACATGGGAAG+AGG | + | chr5.3:31875476-31875495 | MS.gene78682:CDS | 45.0% | |
| TGAATCTCAACAGCAAGAGG+TGG | - | chr5.3:31874653-31874672 | None:intergenic | 45.0% | |
| TTACTGCAGTATCGTAAGCG+TGG | - | chr5.3:31877245-31877264 | None:intergenic | 45.0% | |
| TTAGGCTGAATGCCATGACT+TGG | + | chr5.3:31875205-31875224 | MS.gene78682:intron | 45.0% | |
| TTGCTAGCATTCCTCGGTAT+GGG | + | chr5.3:31879859-31879878 | MS.gene78682:intron | 45.0% | |
| ! | AGAATAGATGCCAAAGGTGC+TGG | - | chr5.3:31876190-31876209 | None:intergenic | 45.0% |
| ! | ATCACTGGTTATCTTGGTGC+TGG | + | chr5.3:31874728-31874747 | MS.gene78682:CDS | 45.0% |
| ! | GAGCTGGAAGCGAACATTTT+TGG | - | chr5.3:31876663-31876682 | None:intergenic | 45.0% |
| ! | GTTTGGTGAGGAAATTGGAG+TGG | + | chr5.3:31875519-31875538 | MS.gene78682:CDS | 45.0% |
| ! | TAGAAGTGTGTTCGAACCCT+CGG | + | chr5.3:31875388-31875407 | MS.gene78682:intron | 45.0% |
| ! | TATCAAGTGAGAGTGTGAGC+TGG | + | chr5.3:31879035-31879054 | MS.gene78682:intron | 45.0% |
| ! | TGAGTGTTGCTAGCATTCCT+CGG | + | chr5.3:31879853-31879872 | MS.gene78682:intron | 45.0% |
| !! | ATTCTACCCGGTGCCAATTT+TGG | + | chr5.3:31880150-31880169 | MS.gene78682:intron | 45.0% |
| !!! | TTTTTTTTAGATTTTATTTT+TGG | - | chr5.3:31875285-31875304 | None:intergenic | 5.0% |
| ACCAGTTATAGGGCCACTCA+GGG | + | chr5.3:31879294-31879313 | MS.gene78682:intron | 50.0% | |
| AGATGCAGTGTTCGGCAAAG+TGG | + | chr5.3:31876076-31876095 | MS.gene78682:intron | 50.0% | |
| AGATTGTTCCTGCTCGGAAG+TGG | + | chr5.3:31880313-31880332 | MS.gene78682:CDS | 50.0% | |
| AGCCATATACGAGTCTGCCA+TGG | - | chr5.3:31877842-31877861 | None:intergenic | 50.0% | |
| AGGTGTGTGACTAGACTGTG+TGG | - | chr5.3:31878869-31878888 | None:intergenic | 50.0% | |
| ATCCGTCTTCACCAGTGGTT+AGG | + | chr5.3:31877966-31877985 | MS.gene78682:intron | 50.0% | |
| CAACGATTCCTGCTAACACG+GGG | + | chr5.3:31877637-31877656 | MS.gene78682:intron | 50.0% | |
| CAGGTAAACTGCGGTCATGA+AGG | - | chr5.3:31877311-31877330 | None:intergenic | 50.0% | |
| CTTATCGGTGAAATCCTGGC+AGG | + | chr5.3:31880272-31880291 | MS.gene78682:intron | 50.0% | |
| GACGTCAGCTTATTGGGCAT+TGG | + | chr5.3:31875048-31875067 | MS.gene78682:intron | 50.0% | |
| GACTCCCAACAGTTATGCCA+AGG | - | chr5.3:31878692-31878711 | None:intergenic | 50.0% | |
| GATGCAGTGTTCGGCAAAGT+GGG | + | chr5.3:31876077-31876096 | MS.gene78682:intron | 50.0% | |
| GCAGACTCGTATATGGCTAG+AGG | + | chr5.3:31877844-31877863 | MS.gene78682:intron | 50.0% | |
| GTAAACTGCGGTCATGAAGG+TGG | - | chr5.3:31877308-31877327 | None:intergenic | 50.0% | |
| GTATGTCCCACCACTTTGTG+TGG | - | chr5.3:31879788-31879807 | None:intergenic | 50.0% | |
| GTCAGCAACTCCTAGATGAC+TGG | + | chr5.3:31878367-31878386 | MS.gene78682:intron | 50.0% | |
| GTTGCTAGCATTCCTCGGTA+TGG | + | chr5.3:31879858-31879877 | MS.gene78682:intron | 50.0% | |
| TAAATGCAGCCCACTTGGGT+TGG | + | chr5.3:31880073-31880092 | MS.gene78682:intron | 50.0% | |
| TCAGCATGCCGCACATTTAG+AGG | + | chr5.3:31877345-31877364 | MS.gene78682:intron | 50.0% | |
| TCTCTGCACAAGCTGCTCAA+GGG | - | chr5.3:31875650-31875669 | None:intergenic | 50.0% | |
| TCTTTCTTCCACTTCCGAGC+AGG | - | chr5.3:31880324-31880343 | None:intergenic | 50.0% | |
| TGCCCAATAAGCTGACGTCA+AGG | - | chr5.3:31875047-31875066 | None:intergenic | 50.0% | |
| TGCCTAACCACTGGTGAAGA+CGG | - | chr5.3:31877971-31877990 | None:intergenic | 50.0% | |
| TGTGGCTAATCCAGCACCTT+TGG | + | chr5.3:31876177-31876196 | MS.gene78682:CDS | 50.0% | |
| TTCTCTGCACAAGCTGCTCA+AGG | - | chr5.3:31875651-31875670 | None:intergenic | 50.0% | |
| TTGGTATCTGCAGAAGGCTC+TGG | + | chr5.3:31877117-31877136 | MS.gene78682:CDS | 50.0% | |
| ! | CATTTGAAGCGTTCCCTGAG+TGG | - | chr5.3:31879310-31879329 | None:intergenic | 50.0% |
| !! | GTTGGTGTCACTCTCATCAC+TGG | + | chr5.3:31874713-31874732 | MS.gene78682:CDS | 50.0% |
| !! | TCTTGGTGCTGGCAAATCCA+CGG | + | chr5.3:31874739-31874758 | MS.gene78682:CDS | 50.0% |
| ACCACCAGACCAACCCAAGT+GGG | - | chr5.3:31880085-31880104 | None:intergenic | 55.0% | |
| CACCAGTTATAGGGCCACTC+AGG | + | chr5.3:31879293-31879312 | MS.gene78682:intron | 55.0% | |
| CTGAGTGGCCCTATAACTGG+TGG | - | chr5.3:31879295-31879314 | None:intergenic | 55.0% | |
| CTGCAGTATCGTAAGCGTGG+CGG | - | chr5.3:31877242-31877261 | None:intergenic | 55.0% | |
| CTGGCATCTGCCAGTCATCT+AGG | - | chr5.3:31878380-31878399 | None:intergenic | 55.0% | |
| GAAGAGTCCCTTGCCTTAGC+TGG | + | chr5.3:31879406-31879425 | MS.gene78682:intron | 55.0% | |
| GACACGTGTCAGTCAGCTAG+AGG | - | chr5.3:31878346-31878365 | None:intergenic | 55.0% | |
| GCTGTGTGCATATCCGTGAC+AGG | + | chr5.3:31878787-31878806 | MS.gene78682:intron | 55.0% | |
| TAGTTCTCTCACAGCCTGCC+AGG | - | chr5.3:31880289-31880308 | None:intergenic | 55.0% | |
| TCCCTGAGTGGCCCTATAAC+TGG | - | chr5.3:31879298-31879317 | None:intergenic | 55.0% | |
| !! | AGAAGGCTCTGGAGCTCTAG+AGG | + | chr5.3:31877128-31877147 | MS.gene78682:CDS | 55.0% |
| !! | AGCTCTAGAGGAACTCGAGG+AGG | + | chr5.3:31877140-31877159 | MS.gene78682:CDS | 55.0% |
| !! | TGGAGCTCTAGAGGAACTCG+AGG | + | chr5.3:31877137-31877156 | MS.gene78682:CDS | 55.0% |
| !! | TGGTCTGGTGGTGTTGGCTT+GGG | + | chr5.3:31880093-31880112 | MS.gene78682:intron | 55.0% |
| !! | TTGGGTTGGTCTGGTGGTGT+TGG | + | chr5.3:31880087-31880106 | MS.gene78682:intron | 55.0% |
| !! | TTGGTCTGGTGGTGTTGGCT+TGG | + | chr5.3:31880092-31880111 | MS.gene78682:intron | 55.0% |
| CACCACCAGACCAACCCAAG+TGG | - | chr5.3:31880086-31880105 | None:intergenic | 60.0% | |
| !! | TTCCAGCTCAAGGAGCACCG+TGG | + | chr5.3:31876674-31876693 | MS.gene78682:CDS | 60.0% |
| AGCCACGGTGCTCCTTGAGC+TGG | - | chr5.3:31876679-31876698 | None:intergenic | 65.0% | |
| !! | GCAGCCCACTTGGGTTGGTC+TGG | + | chr5.3:31880078-31880097 | MS.gene78682:intron | 65.0% |
| !! | GCCCACTTGGGTTGGTCTGG+TGG | + | chr5.3:31880081-31880100 | MS.gene78682:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 31874626 | 31880375 | 31874626 | ID=MS.gene78682 |
| chr5.3 | mRNA | 31874626 | 31880375 | 31874626 | ID=MS.gene78682.t1;Parent=MS.gene78682 |
| chr5.3 | exon | 31874626 | 31874760 | 31874626 | ID=MS.gene78682.t1.exon1;Parent=MS.gene78682.t1 |
| chr5.3 | CDS | 31874626 | 31874760 | 31874626 | ID=cds.MS.gene78682.t1;Parent=MS.gene78682.t1 |
| chr5.3 | exon | 31875460 | 31875677 | 31875460 | ID=MS.gene78682.t1.exon2;Parent=MS.gene78682.t1 |
| chr5.3 | CDS | 31875460 | 31875677 | 31875460 | ID=cds.MS.gene78682.t1;Parent=MS.gene78682.t1 |
| chr5.3 | exon | 31876147 | 31876261 | 31876147 | ID=MS.gene78682.t1.exon3;Parent=MS.gene78682.t1 |
| chr5.3 | CDS | 31876147 | 31876261 | 31876147 | ID=cds.MS.gene78682.t1;Parent=MS.gene78682.t1 |
| chr5.3 | exon | 31876650 | 31876739 | 31876650 | ID=MS.gene78682.t1.exon4;Parent=MS.gene78682.t1 |
| chr5.3 | CDS | 31876650 | 31876739 | 31876650 | ID=cds.MS.gene78682.t1;Parent=MS.gene78682.t1 |
| chr5.3 | exon | 31877090 | 31877260 | 31877090 | ID=MS.gene78682.t1.exon5;Parent=MS.gene78682.t1 |
| chr5.3 | CDS | 31877090 | 31877260 | 31877090 | ID=cds.MS.gene78682.t1;Parent=MS.gene78682.t1 |
| chr5.3 | exon | 31877349 | 31877468 | 31877349 | ID=MS.gene78682.t1.exon6;Parent=MS.gene78682.t1 |
| chr5.3 | CDS | 31877349 | 31877468 | 31877349 | ID=cds.MS.gene78682.t1;Parent=MS.gene78682.t1 |
| chr5.3 | exon | 31877848 | 31877958 | 31877848 | ID=MS.gene78682.t1.exon7;Parent=MS.gene78682.t1 |
| chr5.3 | CDS | 31877848 | 31877958 | 31877848 | ID=cds.MS.gene78682.t1;Parent=MS.gene78682.t1 |
| chr5.3 | exon | 31880294 | 31880375 | 31880294 | ID=MS.gene78682.t1.exon8;Parent=MS.gene78682.t1 |
| chr5.3 | CDS | 31880294 | 31880375 | 31880294 | ID=cds.MS.gene78682.t1;Parent=MS.gene78682.t1 |
| Gene Sequence |
| Protein sequence |
