AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene029418

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene029418.t1 MTR_1g110510 98.592 284 4 0 1 284 1 284 0.0 588
MS.gene029418.t1 MTR_1g110510 97.826 230 5 0 1 230 1 230 8.53e-173 476
MS.gene029418.t1 MTR_5g056160 69.580 286 84 2 1 283 1 286 7.43e-147 414
MS.gene029418.t1 MTR_5g056140 68.531 286 87 2 1 283 1 286 4.08e-146 412
MS.gene029418.t1 MTR_4g090610 59.259 270 104 2 20 283 16 285 1.11e-113 329
MS.gene029418.t1 MTR_4g090610 59.259 270 104 2 20 283 60 329 1.91e-113 330
MS.gene029418.t1 MTR_4g090610 59.259 270 104 2 20 283 105 374 2.99e-113 332
MS.gene029418.t1 MTR_2g012440 45.583 283 142 5 7 283 15 291 2.84e-89 268
MS.gene029418.t1 MTR_4g090610 56.995 193 77 2 20 206 16 208 2.40e-74 228
MS.gene029418.t1 MTR_4g090610 56.995 193 77 2 20 206 60 252 4.21e-74 229
MS.gene029418.t1 MTR_2g012440 47.489 219 104 4 7 219 15 228 8.08e-70 216
MS.gene029418.t1 MTR_5g056560 62.308 130 49 0 124 253 30 159 3.89e-55 177
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene029418.t1 AT1G68290 60.915 284 105 3 4 283 8 289 9.39e-132 375
MS.gene029418.t1 AT4G21585 53.597 278 120 3 15 283 13 290 1.52e-106 311
MS.gene029418.t1 AT4G21585 53.597 278 120 3 15 283 13 290 1.52e-106 311
MS.gene029418.t1 AT4G21585 49.013 304 120 4 15 283 13 316 1.28e-100 297
MS.gene029418.t1 AT4G21585 48.693 306 120 4 15 283 13 318 2.60e-100 296
MS.gene029418.t1 AT4G21590 50.709 282 125 4 11 283 9 285 3.92e-100 295
MS.gene029418.t1 AT4G21590 50.709 282 125 4 11 283 9 285 3.92e-100 295
MS.gene029418.t1 AT1G11190 49.630 270 129 4 20 283 25 293 4.18e-98 290
MS.gene029418.t1 AT4G21600 47.902 286 142 3 5 283 2 287 1.28e-97 289
MS.gene029418.t1 AT4G21585 44.980 249 102 4 15 228 13 261 1.06e-71 221
MS.gene029418.t1 AT4G21585 44.980 249 102 4 15 228 13 261 1.06e-71 221

Find 50 sgRNAs with CRISPR-Local

Find 139 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACCACTCAGCTTCTTGACTA+TGG 0.302298 1.4:-84307491 MS.gene029418:CDS
CCTTCTAGTACAGAATCTTC+AGG 0.334513 1.4:+84306273 None:intergenic
AAGGGAACTTACTGTCATAT+TGG 0.351867 1.4:+84307748 None:intergenic
GAAATTTAATTGATGTTCAT+TGG 0.362937 1.4:-84306922 MS.gene029418:CDS
ATATGCATCTGAAGGTATTA+AGG 0.385175 1.4:-84306325 MS.gene029418:CDS
TGACTATTGGCAAACGTGAT+AGG 0.404381 1.4:+84306160 None:intergenic
CCTGAAGATTCTGTACTAGA+AGG 0.411841 1.4:-84306273 MS.gene029418:intron
GCTAATCGCAAACTGACTAT+TGG 0.426971 1.4:+84306147 None:intergenic
GGGGATTGCAAGGATTTGAA+TGG 0.433220 1.4:-84307554 MS.gene029418:CDS
ACTTGTCAAGTGTGTGCTCA+TGG 0.461201 1.4:-84307848 MS.gene029418:CDS
CTGAGCTATCTTACAAGTAA+TGG 0.475088 1.4:+84308172 None:intergenic
GTATTAAGGCAGCATGTCAA+TGG 0.478931 1.4:-84306311 MS.gene029418:CDS
CTTCTAGTACAGAATCTTCA+GGG 0.485476 1.4:+84306274 None:intergenic
GTTTCAAAACATTCAAGGGT+GGG 0.486286 1.4:-84308210 MS.gene029418:CDS
TTTCAAAACATTCAAGGGTG+GGG 0.494907 1.4:-84308209 MS.gene029418:CDS
TAATTTGCAGCCTCTACATA+CGG 0.498462 1.4:-84306966 MS.gene029418:intron
TATTGGAAAGTGCAAAGCTT+AGG 0.504659 1.4:+84307765 None:intergenic
CTTGTCAAGTGTGTGCTCAT+GGG 0.509798 1.4:-84307847 MS.gene029418:CDS
CATCTCCCATAAAATGAGAA+AGG 0.511115 1.4:+84307314 None:intergenic
ACATGGTCGGATGAGGTAGC+AGG 0.512546 1.4:-84306524 MS.gene029418:CDS
GAGAAAGATAGATGTGTTGT+GGG 0.518130 1.4:-84307530 MS.gene029418:CDS
TGGAAAGTGCAAAGCTTAGG+AGG 0.520990 1.4:+84307768 None:intergenic
AGTAATGGGACATACATGTC+GGG 0.521034 1.4:+84306467 None:intergenic
GTCGGATGAGGTAGCAGGAT+GGG 0.528823 1.4:-84306519 MS.gene029418:CDS
TATTCGTTAAGGGGATTGCA+AGG 0.533466 1.4:-84307564 MS.gene029418:intron
TATTAAGGCAGCATGTCAAT+GGG 0.542486 1.4:-84306310 MS.gene029418:CDS
AGAGAAAGATAGATGTGTTG+TGG 0.544030 1.4:-84307531 MS.gene029418:CDS
ATTCAAGGGTGGGGAACTGA+TGG 0.544754 1.4:-84308200 MS.gene029418:CDS
AGCTGAAGGAGGAGTTCGAT+TGG 0.551609 1.4:-84306127 MS.gene029418:CDS
TTGATGTTCATTGGTTCACA+AGG 0.554509 1.4:-84306913 MS.gene029418:CDS
GTCAGTTTGCGATTAGCTGA+AGG 0.557320 1.4:-84306141 MS.gene029418:CDS
AATTTGCAGCCTCTACATAC+GGG 0.559058 1.4:-84306965 MS.gene029418:intron
ACAGAAAACATGGTCGGATG+AGG 0.559720 1.4:-84306531 MS.gene029418:intron
CATTACTTGTAAGATAGCTC+AGG 0.566463 1.4:-84308171 MS.gene029418:intron
GACATACATGTCGGGGCATG+TGG 0.567220 1.4:+84306475 None:intergenic
TAAATTTCCTCCCTTGTCTG+TGG 0.579106 1.4:+84306937 None:intergenic
TGTTTCAAAACATTCAAGGG+TGG 0.581514 1.4:-84308211 MS.gene029418:CDS
GGAAAGTGCAAAGCTTAGGA+GGG 0.585750 1.4:+84307769 None:intergenic
GTGGTAAAACCCGTATGTAG+AGG 0.614985 1.4:+84306956 None:intergenic
TATGATACAGAAAACATGGT+CGG 0.617584 1.4:-84306537 MS.gene029418:intron
GGTCGGATGAGGTAGCAGGA+TGG 0.619767 1.4:-84306520 MS.gene029418:CDS
CCTCAGTGATACAGCTGCAG+CGG 0.623111 1.4:-84307907 MS.gene029418:CDS
AGTTTGCGATTAGCTGAAGG+AGG 0.637560 1.4:-84306138 MS.gene029418:CDS
GAAAGTGCAAAGCTTAGGAG+GGG 0.640450 1.4:+84307770 None:intergenic
GGAAAAGAAGTGCTTGCGTG+AGG 0.665712 1.4:+84307335 None:intergenic
TGCTATTCAAGAGAATATCA+CGG 0.677694 1.4:-84306704 MS.gene029418:intron
GCCATAGTCAAGAAGCTGAG+TGG 0.678325 1.4:+84307490 None:intergenic
TTCTAGTACAGAATCTTCAG+GGG 0.679325 1.4:+84306275 None:intergenic
GTAATGGGACATACATGTCG+GGG 0.721213 1.4:+84306468 None:intergenic
CCGCTGCAGCTGTATCACTG+AGG 0.729141 1.4:+84307907 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAAATTACTTAATTACTT+TGG - chr1.4:84307999-84308018 MS.gene029418:intron 10.0%
!! ATAGAATATATAATAAAACA+CGG + chr1.4:84306295-84306314 None:intergenic 10.0%
!! TAAAATTACTTAATTACTTT+GGG - chr1.4:84308000-84308019 MS.gene029418:intron 10.0%
!! AATGTAGACATAAAAAATTT+AGG + chr1.4:84306928-84306947 None:intergenic 15.0%
!! TGTAGAAATAATTAGATTTA+GGG + chr1.4:84306232-84306251 None:intergenic 15.0%
!!! AATTTTATACAGATAAATGT+GGG + chr1.4:84307987-84308006 None:intergenic 15.0%
!!! ATTTATGTTTTATGATAAAG+TGG - chr1.4:84306698-84306717 MS.gene029418:intron 15.0%
!!! TAATTTTATACAGATAAATG+TGG + chr1.4:84307988-84308007 None:intergenic 15.0%
!! AAATTAACACAGCAAAAAAT+AGG + chr1.4:84307378-84307397 None:intergenic 20.0%
!! AAGATATAAACTTAAGAGTA+TGG + chr1.4:84307330-84307349 None:intergenic 20.0%
!! ACTTGTTTAAATATTCGTTA+AGG - chr1.4:84306783-84306802 MS.gene029418:intron 20.0%
!! ATTTCAAACTAAACTAGTAA+TGG + chr1.4:84307909-84307928 None:intergenic 20.0%
!! CTTGTTTAAATATTCGTTAA+GGG - chr1.4:84306784-84306803 MS.gene029418:intron 20.0%
!! GAAATTTAATTGATGTTCAT+TGG - chr1.4:84307436-84307455 MS.gene029418:intron 20.0%
!! GTGTAGAAATAATTAGATTT+AGG + chr1.4:84306233-84306252 None:intergenic 20.0%
!! TATATAATAAAACACGGATT+TGG + chr1.4:84306289-84306308 None:intergenic 20.0%
!! TTAACGAATATTTAAACAAG+TGG + chr1.4:84306784-84306803 None:intergenic 20.0%
!! TTGTTTAAATATTCGTTAAG+GGG - chr1.4:84306785-84306804 MS.gene029418:intron 20.0%
!! TTTCAAACTAAACTAGTAAT+GGG + chr1.4:84307908-84307927 None:intergenic 20.0%
!!! AATTTTGTAACATATAGGTT+TGG - chr1.4:84307566-84307585 MS.gene029418:intron 20.0%
!!! ACATAAAAAATTTAGGTTCA+TGG + chr1.4:84306921-84306940 None:intergenic 20.0%
!!! AGATATAAACTTAAGAGTAT+GGG + chr1.4:84307329-84307348 None:intergenic 20.0%
!!! ATTTTATACAGATAAATGTG+GGG + chr1.4:84307986-84308005 None:intergenic 20.0%
!!! ATTTTATGATACAGAAAACA+TGG - chr1.4:84307817-84307836 MS.gene029418:CDS 20.0%
!!! ATTTTGTAACATATAGGTTT+GGG - chr1.4:84307567-84307586 MS.gene029418:intron 20.0%
!!! GTGTCAAATTTTATCTTAAA+TGG - chr1.4:84306540-84306559 MS.gene029418:intron 20.0%
!!! TAGTTTGAAATTTGTTCTAT+TGG - chr1.4:84307918-84307937 MS.gene029418:intron 20.0%
!!! TGACTAATTTTGTAACATAT+AGG - chr1.4:84307561-84307580 MS.gene029418:intron 20.0%
!!! TTTTAAAGTCATTGAATTCT+AGG + chr1.4:84306662-84306681 None:intergenic 20.0%
!!! TTTTGTTTCAAAACATTCAA+GGG - chr1.4:84306144-84306163 MS.gene029418:CDS 20.0%
!!! TTTTTGTTTCAAAACATTCA+AGG - chr1.4:84306143-84306162 MS.gene029418:CDS 20.0%
! AAATAAATAATCTGCCTTGA+CGG + chr1.4:84306727-84306746 None:intergenic 25.0%
! AGAACTATGCAAAATGAAAA+GGG + chr1.4:84306631-84306650 None:intergenic 25.0%
! TACAAATTCTTGAATTCACA+CGG + chr1.4:84307278-84307297 None:intergenic 25.0%
! TAGAACTATGCAAAATGAAA+AGG + chr1.4:84306632-84306651 None:intergenic 25.0%
! TTCAAGAATTTGTAACTTCA+TGG - chr1.4:84307284-84307303 MS.gene029418:intron 25.0%
!! AACCAAATTCTTGTTTCTTA+TGG - chr1.4:84306979-84306998 MS.gene029418:intron 25.0%
!! ACCAAATTCTTGTTTCTTAT+GGG - chr1.4:84306980-84306999 MS.gene029418:intron 25.0%
!! ATATAAACTTAAGAGTATGG+GGG + chr1.4:84307327-84307346 None:intergenic 25.0%
!! CTTTTCCTTTCTCATTTTAT+GGG - chr1.4:84307039-84307058 MS.gene029418:intron 25.0%
!! GATATAAACTTAAGAGTATG+GGG + chr1.4:84307328-84307347 None:intergenic 25.0%
!! TATGTTTTATGATAAAGTGG+AGG - chr1.4:84306701-84306720 MS.gene029418:intron 25.0%
!! TCTTTTCCTTTCTCATTTTA+TGG - chr1.4:84307038-84307057 MS.gene029418:intron 25.0%
!! TTTTATACAGATAAATGTGG+GGG + chr1.4:84307985-84308004 None:intergenic 25.0%
!!! TTTTATTTATATCAGCTCGT+TGG - chr1.4:84306950-84306969 MS.gene029418:CDS 25.0%
AAACACAGACTTGAATTCTT+TGG - chr1.4:84306332-84306351 MS.gene029418:intron 30.0%
CAAAAACATGAATGAGACTA+TGG + chr1.4:84306129-84306148 None:intergenic 30.0%
GATTCATGATGTTGAGAATT+GGG + chr1.4:84307498-84307517 None:intergenic 30.0%
GTTTCATGATACAGTTAGAA+AGG + chr1.4:84308156-84308175 None:intergenic 30.0%
TATGATACAGAAAACATGGT+CGG - chr1.4:84307821-84307840 MS.gene029418:CDS 30.0%
TCACTGAAAAATACGATTGA+GGG + chr1.4:84308263-84308282 None:intergenic 30.0%
TGATTCATGATGTTGAGAAT+TGG + chr1.4:84307499-84307518 None:intergenic 30.0%
TGCTATTCAAGAGAATATCA+CGG - chr1.4:84307654-84307673 MS.gene029418:intron 30.0%
TTATTGTTAGACATACCTGA+TGG + chr1.4:84307071-84307090 None:intergenic 30.0%
TTTAGGGAGAGAAAAATGAT+TGG + chr1.4:84306216-84306235 None:intergenic 30.0%
! AAAAATTTAGGTTCATGGCA+AGG + chr1.4:84306916-84306935 None:intergenic 30.0%
! AAAATTTAGGTTCATGGCAA+GGG + chr1.4:84306915-84306934 None:intergenic 30.0%
! CCAAATTCTTGTTTCTTATG+GGG - chr1.4:84306981-84307000 MS.gene029418:intron 30.0%
!! AAGTCATTTTGTGCATAATC+TGG + chr1.4:84306494-84306513 None:intergenic 30.0%
!! ATAAGGACAATGTTGATTTC+AGG - chr1.4:84307187-84307206 MS.gene029418:intron 30.0%
!! ATATGCATCTGAAGGTATTA+AGG - chr1.4:84308033-84308052 MS.gene029418:intron 30.0%
AAAATCCTGTGCAAGATTGA+AGG + chr1.4:84307784-84307803 None:intergenic 35.0%
AAGGGAACTTACTGTCATAT+TGG + chr1.4:84306613-84306632 None:intergenic 35.0%
AGAGAAAGATAGATGTGTTG+TGG - chr1.4:84306827-84306846 MS.gene029418:intron 35.0%
ATAGGAAGTAATCATCTGCA+GGG + chr1.4:84308183-84308202 None:intergenic 35.0%
CATCTCCCATAAAATGAGAA+AGG + chr1.4:84307047-84307066 None:intergenic 35.0%
CATTACTTGTAAGATAGCTC+AGG - chr1.4:84306187-84306206 MS.gene029418:intron 35.0%
CCCCATAAGAAACAAGAATT+TGG + chr1.4:84306984-84307003 None:intergenic 35.0%
CGAAAAATGTCGAGAAATAG+AGG + chr1.4:84307755-84307774 None:intergenic 35.0%
CTGAGCTATCTTACAAGTAA+TGG + chr1.4:84306189-84306208 None:intergenic 35.0%
CTTCTAGTACAGAATCTTCA+GGG + chr1.4:84308087-84308106 None:intergenic 35.0%
GAGAAAGATAGATGTGTTGT+GGG - chr1.4:84306828-84306847 MS.gene029418:intron 35.0%
GAGACTGCACACAATAAAAA+AGG + chr1.4:84306430-84306449 None:intergenic 35.0%
GTTTCAAAACATTCAAGGGT+GGG - chr1.4:84306148-84306167 MS.gene029418:CDS 35.0%
TATTAAGGCAGCATGTCAAT+GGG - chr1.4:84308048-84308067 MS.gene029418:intron 35.0%
TGTTTCAAAACATTCAAGGG+TGG - chr1.4:84306147-84306166 MS.gene029418:CDS 35.0%
TTCTAGTACAGAATCTTCAG+GGG + chr1.4:84308086-84308105 None:intergenic 35.0%
TTTCAAAACATTCAAGGGTG+GGG - chr1.4:84306149-84306168 MS.gene029418:CDS 35.0%
! CTTTTCAGATATGCATCTGA+AGG - chr1.4:84308025-84308044 MS.gene029418:intron 35.0%
! TAATTTGCAGCCTCTACATA+CGG - chr1.4:84307392-84307411 MS.gene029418:intron 35.0%
! TAGTAATGGGACATACATGT+CGG + chr1.4:84307895-84307914 None:intergenic 35.0%
! TATTGGAAAGTGCAAAGCTT+AGG + chr1.4:84306596-84306615 None:intergenic 35.0%
!! AGCTCTGAATCTCCAAAAAT+CGG - chr1.4:84307100-84307119 MS.gene029418:intron 35.0%
!! TTGATGTTCATTGGTTCACA+AGG - chr1.4:84307445-84307464 MS.gene029418:intron 35.0%
AAGCTGCAGAACAATACAAC+AGG + chr1.4:84306255-84306274 None:intergenic 40.0%
AATTTGCAGCCTCTACATAC+GGG - chr1.4:84307393-84307412 MS.gene029418:intron 40.0%
ACATTCCTTCAATCTTGCAC+AGG - chr1.4:84307776-84307795 MS.gene029418:CDS 40.0%
CCTGAAGATTCTGTACTAGA+AGG - chr1.4:84308085-84308104 MS.gene029418:intron 40.0%
CCTTCTAGTACAGAATCTTC+AGG + chr1.4:84308088-84308107 None:intergenic 40.0%
GAGACTGTTGGATCAAGATA+AGG - chr1.4:84307170-84307189 MS.gene029418:intron 40.0%
GATAGGAAGTAATCATCTGC+AGG + chr1.4:84308184-84308203 None:intergenic 40.0%
GCTAATCGCAAACTGACTAT+TGG + chr1.4:84308214-84308233 None:intergenic 40.0%
GTATTAAGGCAGCATGTCAA+TGG - chr1.4:84308047-84308066 MS.gene029418:intron 40.0%
TAAATTTCCTCCCTTGTCTG+TGG + chr1.4:84307424-84307443 None:intergenic 40.0%
TATTCGTTAAGGGGATTGCA+AGG - chr1.4:84306794-84306813 MS.gene029418:intron 40.0%
TCCAAAAATCGGATTCCCAA+CGG - chr1.4:84307111-84307130 MS.gene029418:intron 40.0%
TGACTATTGGCAAACGTGAT+AGG + chr1.4:84308201-84308220 None:intergenic 40.0%
! AGTAATGGGACATACATGTC+GGG + chr1.4:84307894-84307913 None:intergenic 40.0%
! TTTTATGGGAGATGTCCATC+AGG - chr1.4:84307053-84307072 MS.gene029418:intron 40.0%
!! TCTTTGGAGTTGCAGTAGTA+CGG - chr1.4:84306348-84306367 MS.gene029418:intron 40.0%
ACAGAAAACATGGTCGGATG+AGG - chr1.4:84307827-84307846 MS.gene029418:CDS 45.0%
ACCACTCAGCTTCTTGACTA+TGG - chr1.4:84306867-84306886 MS.gene029418:intron 45.0%
ACTTGTCAAGTGTGTGCTCA+TGG - chr1.4:84306510-84306529 MS.gene029418:CDS 45.0%
CCACATCAGTGCAGATTTCA+AGG + chr1.4:84307252-84307271 None:intergenic 45.0%
CTTGTCAAGTGTGTGCTCAT+GGG - chr1.4:84306511-84306530 MS.gene029418:CDS 45.0%
GGGGATTGCAAGGATTTGAA+TGG - chr1.4:84306804-84306823 MS.gene029418:intron 45.0%
GTGGTAAAACCCGTATGTAG+AGG + chr1.4:84307405-84307424 None:intergenic 45.0%
! ACCGTTGGGAATCCGATTTT+TGG + chr1.4:84307115-84307134 None:intergenic 45.0%
! ACGGGTTTTACCACAGACAA+GGG - chr1.4:84307411-84307430 MS.gene029418:intron 45.0%
! AGTTTGCGATTAGCTGAAGG+AGG - chr1.4:84308220-84308239 MS.gene029418:CDS 45.0%
! CCTTGAAATCTGCACTGATG+TGG - chr1.4:84307249-84307268 MS.gene029418:intron 45.0%
! GAAAGTGCAAAGCTTAGGAG+GGG + chr1.4:84306591-84306610 None:intergenic 45.0%
! GGAAAGTGCAAAGCTTAGGA+GGG + chr1.4:84306592-84306611 None:intergenic 45.0%
! GTAATGGGACATACATGTCG+GGG + chr1.4:84307893-84307912 None:intergenic 45.0%
! GTCAGTTTGCGATTAGCTGA+AGG - chr1.4:84308217-84308236 MS.gene029418:CDS 45.0%
! TACGGGTTTTACCACAGACA+AGG - chr1.4:84307410-84307429 MS.gene029418:intron 45.0%
! TGGAAAGTGCAAAGCTTAGG+AGG + chr1.4:84306593-84306612 None:intergenic 45.0%
!!! GTGGGTTTTTTGCAACCGTT+GGG + chr1.4:84307129-84307148 None:intergenic 45.0%
!!! TGTGGGTTTTTTGCAACCGT+TGG + chr1.4:84307130-84307149 None:intergenic 45.0%
AATTGGGCTCACTCACATGG+TGG + chr1.4:84307482-84307501 None:intergenic 50.0%
ACATTCATGCAGTCTCCACG+TGG - chr1.4:84307147-84307166 MS.gene029418:intron 50.0%
ACGTGGAGACTGCATGAATG+TGG + chr1.4:84307148-84307167 None:intergenic 50.0%
AGCTGAAGGAGGAGTTCGAT+TGG - chr1.4:84308231-84308250 MS.gene029418:CDS 50.0%
ATTCAAGGGTGGGGAACTGA+TGG - chr1.4:84306158-84306177 MS.gene029418:CDS 50.0%
CATTCATGCAGTCTCCACGT+GGG - chr1.4:84307148-84307167 MS.gene029418:intron 50.0%
CGTGGAGACTGCATGAATGT+GGG + chr1.4:84307147-84307166 None:intergenic 50.0%
GAGAATTGGGCTCACTCACA+TGG + chr1.4:84307485-84307504 None:intergenic 50.0%
GCCATAGTCAAGAAGCTGAG+TGG + chr1.4:84306871-84306890 None:intergenic 50.0%
TGATAAAGTGGAGGCCGTCA+AGG - chr1.4:84306710-84306729 MS.gene029418:CDS 50.0%
! GGTTTTACCACAGACAAGGG+AGG - chr1.4:84307414-84307433 MS.gene029418:intron 50.0%
!! GGAAAAGAAGTGCTTGCGTG+AGG + chr1.4:84307026-84307045 None:intergenic 50.0%
ACATGGTCGGATGAGGTAGC+AGG - chr1.4:84307834-84307853 MS.gene029418:CDS 55.0%
CCTCAGTGATACAGCTGCAG+CGG - chr1.4:84306451-84306470 MS.gene029418:intron 55.0%
GACATACATGTCGGGGCATG+TGG + chr1.4:84307886-84307905 None:intergenic 55.0%
GTCGGATGAGGTAGCAGGAT+GGG - chr1.4:84307839-84307858 MS.gene029418:CDS 55.0%
TGATCCAACAGTCTCCCACG+TGG + chr1.4:84307165-84307184 None:intergenic 55.0%
CCGCTGCAGCTGTATCACTG+AGG + chr1.4:84306454-84306473 None:intergenic 60.0%
GGTCGGATGAGGTAGCAGGA+TGG - chr1.4:84307838-84307857 MS.gene029418:CDS 60.0%
GTCTCCACGTGGGAGACTGT+TGG - chr1.4:84307158-84307177 MS.gene029418:intron 60.0%


Chromosome Type Strat End Strand Name
chr1.4 gene 84306098 84308282 84306098 ID=MS.gene029418
chr1.4 mRNA 84306098 84308282 84306098 ID=MS.gene029418.t1;Parent=MS.gene029418
chr1.4 exon 84308172 84308282 84308172 ID=MS.gene029418.t1.exon1;Parent=MS.gene029418.t1
chr1.4 CDS 84308172 84308282 84308172 ID=cds.MS.gene029418.t1;Parent=MS.gene029418.t1
chr1.4 exon 84307760 84307934 84307760 ID=MS.gene029418.t1.exon2;Parent=MS.gene029418.t1
chr1.4 CDS 84307760 84307934 84307760 ID=cds.MS.gene029418.t1;Parent=MS.gene029418.t1
chr1.4 exon 84307477 84307575 84307477 ID=MS.gene029418.t1.exon3;Parent=MS.gene029418.t1
chr1.4 CDS 84307477 84307575 84307477 ID=cds.MS.gene029418.t1;Parent=MS.gene029418.t1
chr1.4 exon 84307306 84307361 84307306 ID=MS.gene029418.t1.exon4;Parent=MS.gene029418.t1
chr1.4 CDS 84307306 84307361 84307306 ID=cds.MS.gene029418.t1;Parent=MS.gene029418.t1
chr1.4 exon 84306895 84306978 84306895 ID=MS.gene029418.t1.exon5;Parent=MS.gene029418.t1
chr1.4 CDS 84306895 84306978 84306895 ID=cds.MS.gene029418.t1;Parent=MS.gene029418.t1
chr1.4 exon 84306705 84306797 84306705 ID=MS.gene029418.t1.exon6;Parent=MS.gene029418.t1
chr1.4 CDS 84306705 84306797 84306705 ID=cds.MS.gene029418.t1;Parent=MS.gene029418.t1
chr1.4 exon 84306482 84306549 84306482 ID=MS.gene029418.t1.exon7;Parent=MS.gene029418.t1
chr1.4 CDS 84306482 84306549 84306482 ID=cds.MS.gene029418.t1;Parent=MS.gene029418.t1
chr1.4 exon 84306274 84306347 84306274 ID=MS.gene029418.t1.exon8;Parent=MS.gene029418.t1
chr1.4 CDS 84306274 84306347 84306274 ID=cds.MS.gene029418.t1;Parent=MS.gene029418.t1
chr1.4 exon 84306098 84306192 84306098 ID=MS.gene029418.t1.exon9;Parent=MS.gene029418.t1
chr1.4 CDS 84306098 84306192 84306098 ID=cds.MS.gene029418.t1;Parent=MS.gene029418.t1
Gene Sequence

>MS.gene029418

ATGGAGCATCACAAAATCATTTTAGTGACCATAGTCTCATTCATGTTTTTGTTTCAAAACATTCAAGGGTGGGGAACTGATGGACATGCCATTACTTGTAAGATAGCTCAGGTAACCAATCATTTTTCTCTCCCTAAATCTAATTATTTCTACACCTGTTGTATTGTTCTGCAGCTTCATCAGAGAATCCAAATCCGTGTTTTATTATATATTCTATCAAAAAAATATATAATAAAACACAGACTTGAATTCTTTGGAGTTGCAGTAGTACGGTACTATATACGTTGTATATTATTATATGCATGTAACAAGTACTATCACATTAATTTCCTTTTTTATTGTGTGCAGTCTCGCCTCAGTGATACAGCTGCAGCGGCTGTGAAAAAATTGCTGCCAGATTATGCACAAAATGACTTGTCAAGTGTGTGCTCATGGGCTGATCGTGTCAAATTTTATCTTAAATGGTCTTCTGCTTTACACTTTGCTGATACCCCTCCTAAGCTTTGCACTTTCCAATATGACAGTAAGTTCCCTTTTCATTTTGCATAGTTCTAATGAAAACCTAGAATTCAATGACTTTAAAAGTGAAAGATGTGATTTATTTATGTTTTATGATAAAGTGGAGGCCGTCAAGGCAGATTATTTATTTATCTTGACTAACATGAAATGTAGTACTGCACTTACCACTTGTTTAAATATTCGTTAAGGGGATTGCAAGGATTTGAATGGAGAGAAAGATAGATGTGTTGTGGGAGCGATTAACAATTACACCACTCAGCTTCTTGACTATGGCAAAGACACTAAATGTAAAAAACCCTTGCCATGAACCTAAATTTTTTATGTCTACATTTATTTTATTTATATCAGCTCGTTGGTTGACTAACCAAATTCTTGTTTCTTATGGGGAAATCACAATATCAGATAACCTCACGCAAGCACTTCTTTTCCTTTCTCATTTTATGGGAGATGTCCATCAGGTATGTCTAACAATAACAATTACAAAGCTCTGAATCTCCAAAAATCGGATTCCCAACGGTTGCAAAAAACCCACATTCATGCAGTCTCCACGTGGGAGACTGTTGGATCAAGATAAGGACAATGTTGATTTCAGGCAGATTTTTTATTTTTGATTTAAAAAACTAAAATCTCGACCTTGAAATCTGCACTGATGTGGTGACCGTGTGAATTCAAGAATTTGTAACTTCATGGAATCTCTCGATTCTGATCCCCCATACTCTTAAGTTTATATCTTAATTTGCAATTTAGTTATCATAATGCCTATTTTTTGCTGTGTTAATTTGCAGCCTCTACATACGGGTTTTACCACAGACAAGGGAGGAAATTTAATTGATGTTCATTGGTTCACAAGGAAACAAAATCTCCACCATGTGAGTGAGCCCAATTCTCAACATCATGAATCATCAAGCTACTTACAATGTGATCTATTTCACTATCTACAACACTGACTAATTTTGTAACATATAGGTTTGGGATGCTAACATAATTGAGACAGCAGAAGAAAGATTCTATGACACTAACATAGATGAATACATCAGTGCTATTCAAGAGAATATCACGGTATACAATGCAGCAGCTTTCTGTTATCTATTTTAAATAAAAGTCTTTTGCTAATGACATGTGACGAAATTTTACACCTCTATTTCTCGACATTTTTCGCACATTCCTTCAATCTTGCACAGGATTTTTACTAATACTCAAATTTTATGATACAGAAAACATGGTCGGATGAGGTAGCAGGATGGGAAGCTTGCAGTTCTAATAAGACCACATGCCCCGACATGTATGTCCCATTACTAGTTTAGTTTGAAATTTGTTCTATTGGCAATAACAATTAATTTGTGTTCAAAACTCTAGCTAGAAAATCCCCCACATTTATCTGTATAAAATTACTTAATTACTTTGGGTACTTTTCAGATATGCATCTGAAGGTATTAAGGCAGCATGTCAATGGGCATATAAAGATGCCCCTGAAGATTCTGTACTAGAAGGTAAGCTATAATAATTTTGCACGTAGAGTTCTTTCATTTATATTTTCCTTTCTAACTGTATCATGAAACAATACCCTGCAGATGATTACTTCCTATCACGTTTGCCAATAGTCAGTTTGCGATTAGCTGAAGGAGGAGTTCGATTGGCAGCAACCCTCAATCGTATTTTTCAGTGA
Protein sequence

>MS.gene029418.t1

MEHHKIILVTIVSFMFLFQNIQGWGTDGHAITCKIAQSRLSDTAAAAVKKLLPDYAQNDLSSVCSWADRVKFYLKWSSALHFADTPPKLCTFQYDRDCKDLNGEKDRCVVGAINNYTTQLLDYGKDTKYNLTQALLFLSHFMGDVHQPLHTGFTTDKGGNLIDVHWFTRKQNLHHVWDANIIETAEERFYDTNIDEYISAIQENITKTWSDEVAGWEACSSNKTTCPDIYASEGIKAACQWAYKDAPEDSVLEDDYFLSRLPIVSLRLAEGGVRLAATLNRIFQ