AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene047520

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene047520.t1 MTR_2g012440 97.682 302 7 0 1 302 1 302 0.0 624
MS.gene047520.t1 MTR_2g012440 97.046 237 7 0 1 237 1 237 4.20e-177 488
MS.gene047520.t1 MTR_4g090610 52.206 272 122 4 27 291 15 285 5.25e-105 308
MS.gene047520.t1 MTR_4g090610 52.206 272 122 4 27 291 59 329 6.07e-105 310
MS.gene047520.t1 MTR_4g090610 52.206 272 122 4 27 291 104 374 9.27e-105 311
MS.gene047520.t1 MTR_1g110510 45.583 283 142 5 15 291 7 283 3.10e-90 270
MS.gene047520.t1 MTR_5g056140 46.127 284 140 6 16 291 8 286 1.67e-87 263
MS.gene047520.t1 MTR_5g056160 45.263 285 145 5 16 293 8 288 5.55e-85 257
MS.gene047520.t1 MTR_4g090610 53.125 192 84 2 27 212 15 206 7.00e-74 227
MS.gene047520.t1 MTR_4g090610 53.125 192 84 2 27 212 59 250 1.15e-73 228
MS.gene047520.t1 MTR_1g110510 47.706 218 103 4 16 228 8 219 4.65e-70 217
MS.gene047520.t1 MTR_5g056560 50.400 125 60 2 137 260 35 158 1.23e-36 130
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene047520.t1 AT1G11190 70.318 283 78 2 26 302 23 305 2.52e-150 424
MS.gene047520.t1 AT4G21585 50.909 275 127 4 25 292 18 291 2.59e-103 304
MS.gene047520.t1 AT4G21585 50.909 275 127 4 25 292 18 291 2.59e-103 304
MS.gene047520.t1 AT1G68290 50.000 298 135 6 1 292 1 290 2.66e-103 304
MS.gene047520.t1 AT4G21585 46.512 301 127 5 25 292 18 317 1.94e-97 290
MS.gene047520.t1 AT4G21585 46.205 303 127 5 25 292 18 319 5.45e-97 289
MS.gene047520.t1 AT4G21590 49.814 269 132 3 25 291 18 285 7.69e-95 282
MS.gene047520.t1 AT4G21590 49.814 269 132 3 25 291 18 285 7.69e-95 282
MS.gene047520.t1 AT4G21600 48.000 275 134 5 25 291 14 287 1.97e-90 271
MS.gene047520.t1 AT4G21585 44.898 245 101 5 25 236 18 261 9.01e-73 225
MS.gene047520.t1 AT4G21585 44.898 245 101 5 25 236 18 261 9.01e-73 225

Find 59 sgRNAs with CRISPR-Local

Find 161 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTGTTCTTGTCACACTTTA+TGG 0.191189 2.1:-72046185 MS.gene047520:CDS
GTGTATGGCCTGATCAAATT+AGG 0.272622 2.1:-72046625 MS.gene047520:CDS
GTCAGATGATGTTGCTTCTT+GGG 0.326798 2.1:-72045629 MS.gene047520:CDS
GGTCAGATGATGTTGCTTCT+TGG 0.337853 2.1:-72045630 MS.gene047520:CDS
TTTCTTGGATGCAGGGAATC+TGG 0.348070 2.1:-72045651 MS.gene047520:intron
TTGTTCTTGTCACACTTTAT+GGG 0.352767 2.1:-72046184 MS.gene047520:CDS
AAATCTGGAATGACTCTATC+AGG 0.358466 2.1:-72045408 MS.gene047520:intron
ATCATAGTACCTGGTGTCAT+TGG 0.368732 2.1:-72047329 MS.gene047520:CDS
CATGAGGATATGTGTGTTGC+AGG 0.383138 2.1:-72046410 MS.gene047520:CDS
ATGATTCTGAACCAAGTGTT+TGG 0.402598 2.1:-72044837 MS.gene047520:CDS
ACTTATCAGCACTTTGTGTA+TGG 0.406470 2.1:-72046640 MS.gene047520:CDS
TACCAGTGCCTAATTTGATC+AGG 0.423305 2.1:+72046617 None:intergenic
GCATACAAATAGCTTGCAAA+TGG 0.430035 2.1:-72045446 MS.gene047520:CDS
GGCACTGGTACAAATATAGA+TGG 0.436647 2.1:-72046604 MS.gene047520:CDS
GGTTATGAAGGAGTTAAATC+TGG 0.439936 2.1:-72045423 MS.gene047520:CDS
GGCGAGATTGAAAGGTTTGA+TGG 0.451678 2.1:-72047396 MS.gene047520:CDS
CATACAAATAGCTTGCAAAT+GGG 0.452050 2.1:-72045445 MS.gene047520:CDS
CTTCAGAGTCTCCAAACACT+TGG 0.462625 2.1:+72044826 None:intergenic
TTGATGGTGTCTCTTCCACT+TGG 0.484743 2.1:-72047380 MS.gene047520:CDS
AAACACTTGGTTCAGAATCA+TGG 0.494857 2.1:+72044839 None:intergenic
TGAACTGCTTCTGATGCCTC+AGG 0.499507 2.1:+72046692 None:intergenic
CAGAAGAATACTTTGACTCA+AGG 0.500412 2.1:-72044908 MS.gene047520:CDS
CAACTTTCTCATTACAAAGA+GGG 0.507826 2.1:-72046365 MS.gene047520:CDS
TGCTTCTTGGGAACATTGCA+AGG 0.512844 2.1:-72045617 MS.gene047520:CDS
GTGTTTGGAGACTCTGAAGA+AGG 0.514236 2.1:-72044822 MS.gene047520:CDS
GCTTGCAAATGGGGTTATGA+AGG 0.514371 2.1:-72045435 MS.gene047520:CDS
TTGTTACCTCCCCATGTCAA+TGG 0.519904 2.1:-72046665 MS.gene047520:CDS
TTAGATATGGCGAGATTGAA+AGG 0.527224 2.1:-72047404 None:intergenic
GTCATTGGATGGAGCAAAGA+GGG 0.537487 2.1:-72047314 MS.gene047520:CDS
TAGTACCTGGTGTCATTGGA+TGG 0.539152 2.1:-72047325 MS.gene047520:CDS
CAATTGATCTACGCTGGTAT+CGG 0.540639 2.1:-72046026 MS.gene047520:CDS
GCAATTCGCTTCATGACATA+CGG 0.542919 2.1:+72044882 None:intergenic
AGACTCTGAAGAAGGATTTG+TGG 0.545154 2.1:-72044814 MS.gene047520:CDS
TCAACTTTCTCATTACAAAG+AGG 0.566465 2.1:-72046366 MS.gene047520:CDS
CTGATAAGTTACCATTGACA+TGG 0.566583 2.1:+72046654 None:intergenic
TCTACTTTCATCATAGTACC+TGG 0.569857 2.1:-72047338 MS.gene047520:CDS
GGCCTGATCAAATTAGGCAC+TGG 0.574012 2.1:-72046619 MS.gene047520:CDS
GAGGTGAATCCAACGTGCAT+CGG 0.577676 2.1:+72046066 None:intergenic
GTTGGATTCACCTCAGACAA+AGG 0.581712 2.1:-72046057 MS.gene047520:CDS
TGTGTTTCCACCTTTGTCTG+AGG 0.582088 2.1:+72046047 None:intergenic
GATGACATGTCTAATTGCAC+AGG 0.594566 2.1:-72047285 MS.gene047520:intron
ATACAAATAGCTTGCAAATG+GGG 0.599056 2.1:-72045444 MS.gene047520:CDS
CTGCAACACACATATCCTCA+TGG 0.607440 2.1:+72046411 None:intergenic
CTTTATGGGAGATATTCACC+AGG 0.613075 2.1:-72046170 MS.gene047520:intron
AAGTTACCATTGACATGGGG+AGG 0.613267 2.1:+72046659 None:intergenic
GAAACACAATTGATCTACGC+TGG 0.614736 2.1:-72046032 MS.gene047520:CDS
GTCATGAAGCGAATTGCTCA+AGG 0.617583 2.1:-72044876 MS.gene047520:CDS
TGACAAGAACAATAATGCCT+CGG 0.623745 2.1:+72046195 None:intergenic
TGATAAGTTACCATTGACAT+GGG 0.635973 2.1:+72046655 None:intergenic
GGTGTGTCAATGAAATGAAG+TGG 0.644809 2.1:+72046575 None:intergenic
TTGCTCCATCCAATGACACC+AGG 0.646308 2.1:+72047320 None:intergenic
AAGAACAACACAAATCCAAG+TGG 0.649453 2.1:+72047365 None:intergenic
TGTCATTGGATGGAGCAAAG+AGG 0.656727 2.1:-72047315 MS.gene047520:CDS
GGATTCACCTCAGACAAAGG+TGG 0.681668 2.1:-72046054 MS.gene047520:CDS
ATGAAGCGAATTGCTCAAGG+TGG 0.685248 2.1:-72044873 MS.gene047520:CDS
ATATTTCAGCCGATGCACGT+TGG 0.693369 2.1:-72046075 MS.gene047520:intron
AAACATAGGGGACTGCCATG+AGG 0.699367 2.1:-72046426 MS.gene047520:intron
TATTGCAGATAATATGACCG+AGG 0.709381 2.1:-72046212 MS.gene047520:intron
GATAAGTTACCATTGACATG+GGG 0.735979 2.1:+72046656 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATAATAAGTTGATTTTATT+TGG + chr2.1:72046532-72046551 None:intergenic 10.0%
!! AATGTTTAGATTTCTTATAT+TGG - chr2.1:72046690-72046709 MS.gene047520:CDS 15.0%
!! ATAATTTCTATATGATTGAT+AGG - chr2.1:72045475-72045494 MS.gene047520:intron 15.0%
!! CTAAAAAAAACAAAAAATCA+TGG + chr2.1:72047220-72047239 None:intergenic 15.0%
!! TAAGTATAAAAATTTCTGAA+AGG + chr2.1:72045910-72045929 None:intergenic 15.0%
!! TATTATTGGAATCATAATTA+TGG - chr2.1:72045441-72045460 MS.gene047520:CDS 15.0%
!! TCTAAACATTAATTAACATT+AGG + chr2.1:72046680-72046699 None:intergenic 15.0%
!! TTATTTATTTATTTGTCATC+TGG + chr2.1:72046962-72046981 None:intergenic 15.0%
!! TTTATCAAATTAATCTTATC+TGG + chr2.1:72046097-72046116 None:intergenic 15.0%
!!! AAAATCAACTTATTATTTCT+TGG - chr2.1:72046535-72046554 MS.gene047520:intron 15.0%
!!! ATTTGTATATGTAGTTATTT+TGG - chr2.1:72045687-72045706 MS.gene047520:intron 15.0%
!!! TTAAATATTGTTACTTACAT+TGG + chr2.1:72046455-72046474 None:intergenic 15.0%
!! AAAAAAACAAAAAATCATGG+AGG + chr2.1:72047217-72047236 None:intergenic 20.0%
!! AAACATTAATTAACATTAGG+AGG + chr2.1:72046677-72046696 None:intergenic 20.0%
!! AAGTCAAACATAACTATTTA+TGG - chr2.1:72045243-72045262 MS.gene047520:intron 20.0%
!! ACATTACTTATGTATATGTT+TGG + chr2.1:72045321-72045340 None:intergenic 20.0%
!! GTCAAGAAAATAATATTAAC+CGG - chr2.1:72045963-72045982 MS.gene047520:intron 20.0%
!! TACTTCATGATATTAATTAC+TGG - chr2.1:72045933-72045952 MS.gene047520:intron 20.0%
!! TATTTCTTAGAATTGTCTTT+CGG + chr2.1:72045288-72045307 None:intergenic 20.0%
!!! TTTCTAAAACATTGCTTTAA+AGG - chr2.1:72047134-72047153 MS.gene047520:intron 20.0%
! AAAATATATTGAACCAACCA+CGG - chr2.1:72047003-72047022 MS.gene047520:intron 25.0%
! AAACTGATATTTAGTGTGTT+TGG - chr2.1:72045002-72045021 MS.gene047520:intron 25.0%
! AAATTCAACCACTTATTGAT+AGG - chr2.1:72046836-72046855 MS.gene047520:intron 25.0%
! ATCAAATTAATCTTATCTGG+TGG + chr2.1:72046094-72046113 None:intergenic 25.0%
! CTGGTTATGAATAAGTATAA+GGG - chr2.1:72045358-72045377 MS.gene047520:intron 25.0%
! TAAAAATCTTTAGACAAACC+TGG + chr2.1:72046052-72046071 None:intergenic 25.0%
! TCAATAAGTGGTTGAATTTA+TGG + chr2.1:72046835-72046854 None:intergenic 25.0%
! TGGTTTAATCAATACAACTA+CGG - chr2.1:72046931-72046950 MS.gene047520:intron 25.0%
! TTTGAACTAATCATGTAGTT+GGG - chr2.1:72046723-72046742 MS.gene047520:intron 25.0%
!! AAGAATCTAAAATTCGCTTA+AGG + chr2.1:72046268-72046287 None:intergenic 25.0%
!! TATAGTTTTTCTCAATGTCT+TGG + chr2.1:72046432-72046451 None:intergenic 25.0%
!! TTTTAGATTCTTCATGCTAA+AGG - chr2.1:72046276-72046295 MS.gene047520:intron 25.0%
!! TTTTGAACTAATCATGTAGT+TGG - chr2.1:72046722-72046741 MS.gene047520:intron 25.0%
!!! AAAGCAATGTTTTAGAAATC+AGG + chr2.1:72047132-72047151 None:intergenic 25.0%
!!! GGGTAATTTTTTTTTGAACA+AGG - chr2.1:72045408-72045427 MS.gene047520:intron 25.0%
!!! TGAACACATGGATTTTTTAT+TGG - chr2.1:72046504-72046523 MS.gene047520:intron 25.0%
!!! TTTTCTTGTTTATGCTCATA+AGG - chr2.1:72046339-72046358 MS.gene047520:intron 25.0%
AAAATATGTTACTAGCAGAC+TGG - chr2.1:72046227-72046246 MS.gene047520:intron 30.0%
AAATCACTGTTACTCTTGAA+GGG - chr2.1:72045388-72045407 MS.gene047520:intron 30.0%
AAGCAACAAATTTGTGAAAC+AGG - chr2.1:72047190-72047209 MS.gene047520:intron 30.0%
ATTGTTCTTGTCACACTTTA+TGG - chr2.1:72046016-72046035 MS.gene047520:CDS 30.0%
CAACTTTCTCATTACAAAGA+GGG - chr2.1:72045836-72045855 MS.gene047520:CDS 30.0%
CATATTATCTGCAATATTGC+CGG + chr2.1:72045985-72046004 None:intergenic 30.0%
CATCATTCATTCCATGTTAA+AGG - chr2.1:72047246-72047265 MS.gene047520:intron 30.0%
CCATGTGTTCATTAAAATCT+AGG + chr2.1:72046495-72046514 None:intergenic 30.0%
GCTGGTTATGAATAAGTATA+AGG - chr2.1:72045357-72045376 MS.gene047520:intron 30.0%
GGTTTAATCAATACAACTAC+GGG - chr2.1:72046932-72046951 MS.gene047520:intron 30.0%
GTATCAAATGATTATCATGC+TGG - chr2.1:72045339-72045358 MS.gene047520:intron 30.0%
GTTAGCTAGAAACTAGTATT+TGG + chr2.1:72045098-72045117 None:intergenic 30.0%
TCAACTTTCTCATTACAAAG+AGG - chr2.1:72045835-72045854 MS.gene047520:CDS 30.0%
TGATAAGTTACCATTGACAT+GGG + chr2.1:72045549-72045568 None:intergenic 30.0%
TGCAACAAAATCCTTTAACA+TGG + chr2.1:72047260-72047279 None:intergenic 30.0%
TTAGAACTGCGTTTGTAAAA+CGG + chr2.1:72045151-72045170 None:intergenic 30.0%
TTGTTCTTGTCACACTTTAT+GGG - chr2.1:72046017-72046036 MS.gene047520:CDS 30.0%
! ACTTATTATTTCTTGGATGC+AGG - chr2.1:72046542-72046561 MS.gene047520:intron 30.0%
! ATACAAATAGCTTGCAAATG+GGG - chr2.1:72046757-72046776 MS.gene047520:intron 30.0%
! CATACAAATAGCTTGCAAAT+GGG - chr2.1:72046756-72046775 MS.gene047520:intron 30.0%
! CTTATTATTTCTTGGATGCA+GGG - chr2.1:72046543-72046562 MS.gene047520:intron 30.0%
! TGAAATCCACATTTTTCATC+TGG + chr2.1:72045650-72045669 None:intergenic 30.0%
! TGTTGCTGTTAACAAACATA+GGG - chr2.1:72045762-72045781 MS.gene047520:intron 30.0%
! TTGTTGCTGTTAACAAACAT+AGG - chr2.1:72045761-72045780 MS.gene047520:intron 30.0%
! TTTTTGAACAAGGTCATGAA+GGG - chr2.1:72045418-72045437 MS.gene047520:CDS 30.0%
!! ACACACGTAGATTTGATTTT+GGG - chr2.1:72045197-72045216 MS.gene047520:intron 30.0%
!! CCTAGATTTTAATGAACACA+TGG - chr2.1:72046492-72046511 MS.gene047520:intron 30.0%
!! TACACACGTAGATTTGATTT+TGG - chr2.1:72045196-72045215 MS.gene047520:intron 30.0%
!!! AAAGCAACGTTTTAAAAACC+TGG - chr2.1:72046868-72046887 MS.gene047520:intron 30.0%
!!! TTTTTTGAACAAGGTCATGA+AGG - chr2.1:72045417-72045436 MS.gene047520:CDS 30.0%
AAACACTTGGTTCAGAATCA+TGG + chr2.1:72047365-72047384 None:intergenic 35.0%
AAACCAATTGAGTCATGATC+CGG + chr2.1:72046917-72046936 None:intergenic 35.0%
AACATCTGATCGTAGATGTA+AGG - chr2.1:72045859-72045878 MS.gene047520:intron 35.0%
AAGAACAACACAAATCCAAG+TGG + chr2.1:72044839-72044858 None:intergenic 35.0%
AAGAGAAGCCTATCAATAAG+TGG + chr2.1:72046847-72046866 None:intergenic 35.0%
ACATCTGATCGTAGATGTAA+GGG - chr2.1:72045860-72045879 MS.gene047520:intron 35.0%
ACTTATCAGCACTTTGTGTA+TGG - chr2.1:72045561-72045580 MS.gene047520:intron 35.0%
ATGATTCTGAACCAAGTGTT+TGG - chr2.1:72047364-72047383 MS.gene047520:CDS 35.0%
CAAATCACTGTTACTCTTGA+AGG - chr2.1:72045387-72045406 MS.gene047520:intron 35.0%
CAGAAGAATACTTTGACTCA+AGG - chr2.1:72047293-72047312 MS.gene047520:CDS 35.0%
CTATGTTCAACCGGTATAAT+TGG - chr2.1:72047097-72047116 MS.gene047520:intron 35.0%
CTGATAAGTTACCATTGACA+TGG + chr2.1:72045550-72045569 None:intergenic 35.0%
GATAAGTTACCATTGACATG+GGG + chr2.1:72045548-72045567 None:intergenic 35.0%
GGTTATGAAGGAGTTAAATC+TGG - chr2.1:72046778-72046797 MS.gene047520:intron 35.0%
GTTTGTAAAACGGAGTTTGA+TGG + chr2.1:72045141-72045160 None:intergenic 35.0%
TAGTCAGTTCTATGTTCAAC+CGG - chr2.1:72047088-72047107 MS.gene047520:intron 35.0%
TATTGCAGATAATATGACCG+AGG - chr2.1:72045989-72046008 MS.gene047520:intron 35.0%
TCTAACAAACATAGTGTGTC+TGG - chr2.1:72044965-72044984 MS.gene047520:intron 35.0%
TCTACTTTCATCATAGTACC+TGG - chr2.1:72044863-72044882 MS.gene047520:CDS 35.0%
TGACAAGAACAATAATGCCT+CGG + chr2.1:72046009-72046028 None:intergenic 35.0%
TGTTTATGCTCATAAGGTGT+GGG - chr2.1:72046345-72046364 MS.gene047520:intron 35.0%
TTGTTTATGCTCATAAGGTG+TGG - chr2.1:72046344-72046363 MS.gene047520:intron 35.0%
! AAACTAGTATTTGGAGCTTC+TGG + chr2.1:72045089-72045108 None:intergenic 35.0%
! AAAGGATTTTGTTGCATGTG+TGG - chr2.1:72047264-72047283 MS.gene047520:intron 35.0%
! AAATCTGGAATGACTCTATC+AGG - chr2.1:72046793-72046812 MS.gene047520:intron 35.0%
! AGTTTTTCTCAATGTCTTGG+AGG + chr2.1:72046429-72046448 None:intergenic 35.0%
! GCATACAAATAGCTTGCAAA+TGG - chr2.1:72046755-72046774 MS.gene047520:intron 35.0%
! GTTGCTGTTAACAAACATAG+GGG - chr2.1:72045763-72045782 MS.gene047520:intron 35.0%
!! AAGGTCATGAAGGGTATTAT+TGG - chr2.1:72045427-72045446 MS.gene047520:CDS 35.0%
!! CATAGAACTGACTAGTTTGT+CGG + chr2.1:72047082-72047101 None:intergenic 35.0%
!! CGTAGATTTGATTTTGGGAA+TGG - chr2.1:72045202-72045221 MS.gene047520:intron 35.0%
!! TTTGTCGGTTAGTTTGATCT+CGG + chr2.1:72047067-72047086 None:intergenic 35.0%
!!! ATAGGCATTTTTAAAGCCTG+AGG - chr2.1:72045493-72045512 MS.gene047520:intron 35.0%
AAATCATGGCAAAAACGCAC+CGG + chr2.1:72045066-72045085 None:intergenic 40.0%
ACATTGCAGTATGATTGCAC+CGG + chr2.1:72047034-72047053 None:intergenic 40.0%
ACGGAGTTTGATGGAAATCA+AGG + chr2.1:72045132-72045151 None:intergenic 40.0%
CAATTGATCTACGCTGGTAT+CGG - chr2.1:72046175-72046194 MS.gene047520:CDS 40.0%
CTTTATGGGAGATATTCACC+AGG - chr2.1:72046031-72046050 MS.gene047520:CDS 40.0%
GAAACACAATTGATCTACGC+TGG - chr2.1:72046169-72046188 MS.gene047520:intron 40.0%
GACACACCAGATGAAAAATG+TGG - chr2.1:72045641-72045660 MS.gene047520:intron 40.0%
GATGACATGTCTAATTGCAC+AGG - chr2.1:72044916-72044935 MS.gene047520:intron 40.0%
GCAATTCGCTTCATGACATA+CGG + chr2.1:72047322-72047341 None:intergenic 40.0%
GCTGAACTAGCCAATTATAC+CGG + chr2.1:72047110-72047129 None:intergenic 40.0%
GGTGTGTCAATGAAATGAAG+TGG + chr2.1:72045629-72045648 None:intergenic 40.0%
GTGTATGGCCTGATCAAATT+AGG - chr2.1:72045576-72045595 MS.gene047520:intron 40.0%
TACCAGTGCCTAATTTGATC+AGG + chr2.1:72045587-72045606 None:intergenic 40.0%
! AAAAGCACGTATGCACTTTC+CGG - chr2.1:72045044-72045063 MS.gene047520:intron 40.0%
! ACTATGTTTGTTAGACGAGG+AGG + chr2.1:72044960-72044979 None:intergenic 40.0%
! AGACTCTGAAGAAGGATTTG+TGG - chr2.1:72047387-72047406 MS.gene047520:CDS 40.0%
! CACACTATGTTTGTTAGACG+AGG + chr2.1:72044963-72044982 None:intergenic 40.0%
! CTATGTTTGTTAGACGAGGA+GGG + chr2.1:72044959-72044978 None:intergenic 40.0%
! GTCAGATGATGTTGCTTCTT+GGG - chr2.1:72046572-72046591 MS.gene047520:CDS 40.0%
! GTGCTTTTGTGAGTTGCAAA+CGG + chr2.1:72045032-72045051 None:intergenic 40.0%
! TGCTTTTGTGAGTTGCAAAC+GGG + chr2.1:72045031-72045050 None:intergenic 40.0%
! TTTGGAGCTTCTGGAAATCA+TGG + chr2.1:72045080-72045099 None:intergenic 40.0%
! TTTTCTCAATGTCTTGGAGG+AGG + chr2.1:72046426-72046445 None:intergenic 40.0%
!! ATCATAGTACCTGGTGTCAT+TGG - chr2.1:72044872-72044891 MS.gene047520:CDS 40.0%
!! GGCACTGGTACAAATATAGA+TGG - chr2.1:72045597-72045616 MS.gene047520:CDS 40.0%
AAGTTACCATTGACATGGGG+AGG + chr2.1:72045545-72045564 None:intergenic 45.0%
AGATCGAACCATGAGACATC+CGG - chr2.1:72046895-72046914 MS.gene047520:intron 45.0%
ATATTTCAGCCGATGCACGT+TGG - chr2.1:72046126-72046145 MS.gene047520:intron 45.0%
ATGAAGCGAATTGCTCAAGG+TGG - chr2.1:72047328-72047347 MS.gene047520:CDS 45.0%
CATCCGGATCATGACTCAAT+TGG - chr2.1:72046911-72046930 MS.gene047520:intron 45.0%
CATGAGGATATGTGTGTTGC+AGG - chr2.1:72045791-72045810 MS.gene047520:CDS 45.0%
CTGCAACACACATATCCTCA+TGG + chr2.1:72045793-72045812 None:intergenic 45.0%
CTTCAGAGTCTCCAAACACT+TGG + chr2.1:72047378-72047397 None:intergenic 45.0%
GCTTGCAAATGGGGTTATGA+AGG - chr2.1:72046766-72046785 MS.gene047520:intron 45.0%
GGCGAGATTGAAAGGTTTGA+TGG - chr2.1:72044805-72044824 MS.gene047520:CDS 45.0%
GTCATGAAGCGAATTGCTCA+AGG - chr2.1:72047325-72047344 MS.gene047520:CDS 45.0%
GTCATTGGATGGAGCAAAGA+GGG - chr2.1:72044887-72044906 MS.gene047520:CDS 45.0%
GTTGGATTCACCTCAGACAA+AGG - chr2.1:72046144-72046163 MS.gene047520:intron 45.0%
TCATGGTTCGATCTTCTACC+AGG + chr2.1:72046889-72046908 None:intergenic 45.0%
TGCTTCTTGGGAACATTGCA+AGG - chr2.1:72046584-72046603 MS.gene047520:CDS 45.0%
TGTCATTGGATGGAGCAAAG+AGG - chr2.1:72044886-72044905 MS.gene047520:CDS 45.0%
TGTGTTTCCACCTTTGTCTG+AGG + chr2.1:72046157-72046176 None:intergenic 45.0%
TTGTTACCTCCCCATGTCAA+TGG - chr2.1:72045536-72045555 MS.gene047520:intron 45.0%
TTTCTTGGATGCAGGGAATC+TGG - chr2.1:72046550-72046569 MS.gene047520:CDS 45.0%
! GGTCAGATGATGTTGCTTCT+TGG - chr2.1:72046571-72046590 MS.gene047520:CDS 45.0%
! GTGTTTGGAGACTCTGAAGA+AGG - chr2.1:72047379-72047398 MS.gene047520:CDS 45.0%
!! TAGTACCTGGTGTCATTGGA+TGG - chr2.1:72044876-72044895 MS.gene047520:CDS 45.0%
!! TTGATGGTGTCTCTTCCACT+TGG - chr2.1:72044821-72044840 MS.gene047520:CDS 45.0%
!! TAAATAAATAAGTATTAAAA+TGG - chr2.1:72046971-72046990 MS.gene047520:intron 5.0%
AAACATAGGGGACTGCCATG+AGG - chr2.1:72045775-72045794 MS.gene047520:CDS 50.0%
GAGGTGAATCCAACGTGCAT+CGG + chr2.1:72046138-72046157 None:intergenic 50.0%
GGATTCACCTCAGACAAAGG+TGG - chr2.1:72046147-72046166 MS.gene047520:intron 50.0%
GGCCTGATCAAATTAGGCAC+TGG - chr2.1:72045582-72045601 MS.gene047520:intron 50.0%
GTCATGATCCGGATGTCTCA+TGG + chr2.1:72046906-72046925 None:intergenic 50.0%
TGAACCAACCACGGTTGAAC+CGG - chr2.1:72047012-72047031 MS.gene047520:intron 50.0%
TGAACTGCTTCTGATGCCTC+AGG + chr2.1:72045512-72045531 None:intergenic 50.0%
TTGCTCCATCCAATGACACC+AGG + chr2.1:72044884-72044903 None:intergenic 50.0%
TTGTTAGACGAGGAGGGCTA+GGG + chr2.1:72044953-72044972 None:intergenic 50.0%
TTTGTTAGACGAGGAGGGCT+AGG + chr2.1:72044954-72044973 None:intergenic 50.0%
!! TGATTGCACCGGTTCAACCG+TGG + chr2.1:72047023-72047042 None:intergenic 55.0%
!! TGCACCGGTTCAACCGTGGT+TGG + chr2.1:72047019-72047038 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr2.1 gene 72044803 72047420 72044803 ID=MS.gene047520
chr2.1 mRNA 72044803 72047420 72044803 ID=MS.gene047520.t1;Parent=MS.gene047520
chr2.1 exon 72047286 72047420 72047286 ID=MS.gene047520.t1.exon1;Parent=MS.gene047520.t1
chr2.1 CDS 72047286 72047420 72047286 ID=cds.MS.gene047520.t1;Parent=MS.gene047520.t1
chr2.1 exon 72046546 72046726 72046546 ID=MS.gene047520.t1.exon2;Parent=MS.gene047520.t1
chr2.1 CDS 72046546 72046726 72046546 ID=cds.MS.gene047520.t1;Parent=MS.gene047520.t1
chr2.1 exon 72046348 72046440 72046348 ID=MS.gene047520.t1.exon3;Parent=MS.gene047520.t1
chr2.1 CDS 72046348 72046440 72046348 ID=cds.MS.gene047520.t1;Parent=MS.gene047520.t1
chr2.1 exon 72046171 72046226 72046171 ID=MS.gene047520.t1.exon4;Parent=MS.gene047520.t1
chr2.1 CDS 72046171 72046226 72046171 ID=cds.MS.gene047520.t1;Parent=MS.gene047520.t1
chr2.1 exon 72046005 72046088 72046005 ID=MS.gene047520.t1.exon5;Parent=MS.gene047520.t1
chr2.1 CDS 72046005 72046088 72046005 ID=cds.MS.gene047520.t1;Parent=MS.gene047520.t1
chr2.1 exon 72045767 72045862 72045767 ID=MS.gene047520.t1.exon6;Parent=MS.gene047520.t1
chr2.1 CDS 72045767 72045862 72045767 ID=cds.MS.gene047520.t1;Parent=MS.gene047520.t1
chr2.1 exon 72045595 72045659 72045595 ID=MS.gene047520.t1.exon7;Parent=MS.gene047520.t1
chr2.1 CDS 72045595 72045659 72045595 ID=cds.MS.gene047520.t1;Parent=MS.gene047520.t1
chr2.1 exon 72045409 72045482 72045409 ID=MS.gene047520.t1.exon8;Parent=MS.gene047520.t1
chr2.1 CDS 72045409 72045482 72045409 ID=cds.MS.gene047520.t1;Parent=MS.gene047520.t1
chr2.1 exon 72044803 72044927 72044803 ID=MS.gene047520.t1.exon9;Parent=MS.gene047520.t1
chr2.1 CDS 72044803 72044927 72044803 ID=cds.MS.gene047520.t1;Parent=MS.gene047520.t1
Gene Sequence

>MS.gene047520

ATGGCGAGATTGAAAGGTTTGATGGTGTCTCTTCCACTTGGATTTGTGTTGTTCTTATGTTCTACTTTCATCATAGTACCTGGTGTCATTGGATGGAGCAAAGAGGGTCATGAGATGACATGTCTAATTGCACAGGTAATGTTCAAACCCTAGCCCTCCTCGTCTAACAAACATAGTGTGTCTGGTTATGTGATAACAAAAACTGATATTTAGTGTGTTTGGTTTCCCGTTTGCAACTCACAAAAGCACGTATGCACTTTCCGGTGCGTTTTTGCCATGATTTCCAGAAGCTCCAAATACTAGTTTCTAGCTAACGTGAGTTTTTGCCTTGATTTCCATCAAACTCCGTTTTACAAACGCAGTTCTAAAAGACGCTTAACATATTTAATTTTTTACACACGTAGATTTGATTTTGGGAATGGAATCAATTCTAAAATCAAAAGTCAAACATAACTATTTATGGTCAAATCACGTTTCGATAACCGAAAGACAATTCTAAGAAATACAAATGTGAACCAAACATATACATAAGTAATGTATCAAATGATTATCATGCTGGTTATGAATAAGTATAAGGGCTAATTCAAATCACTGTTACTCTTGAAGGGTAATTTTTTTTTGAACAAGGTCATGAAGGGTATTATTGGAATCATAATTATGGTAAAGTAATTGATAATTTCTATATGATTGATAGGCATTTTTAAAGCCTGAGGCATCAGAAGCAGTTCATCACTTGTTACCTCCCCATGTCAATGGTAACTTATCAGCACTTTGTGTATGGCCTGATCAAATTAGGCACTGGTACAAATATAGATGGACAAGTCCACTTCATTTCATTGACACACCAGATGAAAAATGTGGATTTCAATATTCAAGTAAGCACTATTTGTATATGTAGTTATTTTGGCATGTGTTCTTGTTATTAAATCTCAAAAATAATTATTATTAATGCAATAATTTGTTGCTGTTAACAAACATAGGGGACTGCCATGAGGATATGTGTGTTGCAGGAGCTATCAGAAATTTCACTTCTCAACTTTCTCATTACAAAGAGGGAACATCTGATCGTAGATGTAAGGGACTCATGTCTATCATTGTTTTTCTCCTTTCAGAAATTTTTATACTTATTTTACTTCATGATATTAATTACTGGAGATTTTGTCAAGAAAATAATATTAACCGGCAATATTGCAGATAATATGACCGAGGCATTATTGTTCTTGTCACACTTTATGGGAGATATTCACCAGGTTTGTCTAAAGATTTTTAAAATTTCTTTTATTATATACCACCAGATAAGATTAATTTGATAAAATTACTATTATATTTCAGCCGATGCACGTTGGATTCACCTCAGACAAAGGTGGAAACACAATTGATCTACGCTGGTATCGGCACAAATCTAATCTGCATCATGTAAGCAAAAAATATGTTACTAGCAGACTGGTTTACAAAACAACTTCCTTAAGCGAATTTTAGATTCTTCATGCTAAAGGAAATTGAGTCAGATATAATTTCTTCATGTGACATTTTTGTTTTTCTTGTTTATGCTCATAAGGTGTGGGACAGAGAAATTATTCTCACAGCATTAGCAGATTACTATGACAAAGATGTGACACTCCTCCTCCAAGACATTGAGAAAAACTATACCAATGTAAGTAACAATATTTAAATTTTTCTATCACTATTCCTAGATTTTAATGAACACATGGATTTTTTATTGGTTCCAAATAAAATCAACTTATTATTTCTTGGATGCAGGGAATCTGGTCAGATGATGTTGCTTCTTGGGAACATTGCAAGGATATCTCTAGTTGTGTAAATAAGTGAGCACTTTTTCTCTTTCACTTTCAATTTCATCAATTCATTTGCCTCCTAATGTTAATTAATGTTTAGATTTCTTATATTGGATGTGCTTGTTTTGAACTAATCATGTAGTTGGGCTAAAGAGAGCATACAAATAGCTTGCAAATGGGGTTATGAAGGAGTTAAATCTGGAATGACTCTATCAGGTAACTCGAGTCACAAACCATAAATTCAACCACTTATTGATAGGCTTCTCTTTAAAGCAACGTTTTAAAAACCTGGTAGAAGATCGAACCATGAGACATCCGGATCATGACTCAATTGGTTTAATCAATACAACTACGGGTGTACCAGATGACAAATAAATAAATAAGTATTAAAATGGATAAAAATGAAAATATATTGAACCAACCACGGTTGAACCGGTGCAATCATACTGCAATGTAATCATCTAACCGAGATCAAACTAACCGACAAACTAGTCAGTTCTATGTTCAACCGGTATAATTGGCTAGTTCAGCCTGATTTCTAAAACATTGCTTTAAAGGACACAACTAATAAAATTTTTGTTTTTTTAAGCTAAGCAACAAATTTGTGAAACAGGACCTCCATGATTTTTTGTTTTTTTTAGCATATTCATCATTCATTCCATGTTAAAGGATTTTGTTGCATGTGTGGTTTTTGCAGAAGAATACTTTGACTCAAGGATGCCGTATGTCATGAAGCGAATTGCTCAAGGTGGAATTCGATTAGCCATGATTCTGAACCAAGTGTTTGGAGACTCTGAAGAAGGATTTGTGGCAGCTACTTAA
Protein sequence

>MS.gene047520.t1

MARLKGLMVSLPLGFVLFLCSTFIIVPGVIGWSKEGHEMTCLIAQAFLKPEASEAVHHLLPPHVNGNLSALCVWPDQIRHWYKYRWTSPLHFIDTPDEKCGFQYSRDCHEDMCVAGAIRNFTSQLSHYKEGTSDRRYNMTEALLFLSHFMGDIHQPMHVGFTSDKGGNTIDLRWYRHKSNLHHVWDREIILTALADYYDKDVTLLLQDIEKNYTNGIWSDDVASWEHCKDISSCVNNWAKESIQIACKWGYEGVKSGMTLSEEYFDSRMPYVMKRIAQGGIRLAMILNQVFGDSEEGFVAAT