Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene33739.t1 | XP_013457108.1 | 97.7 | 300 | 7 | 0 | 2 | 301 | 39 | 338 | 3.70E-172 | 614 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene33739.t1 | F4JJL0 | 67.4 | 285 | 93 | 0 | 15 | 299 | 13 | 297 | 7.4e-121 | 434.9 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene33739.t1 | A0A072UMV8 | 97.7 | 300 | 7 | 0 | 2 | 301 | 39 | 338 | 2.7e-172 | 614.0 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene052539 | MS.gene33739 | 0.866796 | 2.19E-65 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene33739 | MS.gene029418 | PPI |
MS.gene33739 | MS.gene052539 | PPI |
MS.gene65673 | MS.gene33739 | PPI |
MS.gene053826 | MS.gene33739 | PPI |
MS.gene63052 | MS.gene33739 | PPI |
MS.gene047520 | MS.gene33739 | PPI |
MS.gene065148 | MS.gene33739 | PPI |
MS.gene33739 | MS.gene65672 | PPI |
MS.gene33739 | MS.gene01769 | PPI |
MS.gene32189 | MS.gene33739 | PPI |
MS.gene33739 | MS.gene64615 | PPI |
MS.gene33739 | MS.gene002383 | PPI |
MS.gene035220 | MS.gene33739 | PPI |
MS.gene33739 | MS.gene01361 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene33739.t1 | MTR_4g090610 | 97.667 | 300 | 7 | 0 | 2 | 301 | 84 | 383 | 0.0 | 620 |
MS.gene33739.t1 | MTR_4g090610 | 97.667 | 300 | 7 | 0 | 2 | 301 | 39 | 338 | 0.0 | 617 |
MS.gene33739.t1 | MTR_4g090610 | 97.959 | 294 | 6 | 0 | 8 | 301 | 1 | 294 | 0.0 | 605 |
MS.gene33739.t1 | MTR_4g090610 | 96.789 | 218 | 7 | 0 | 2 | 219 | 39 | 256 | 4.57e-159 | 445 |
MS.gene33739.t1 | MTR_4g090610 | 97.170 | 212 | 6 | 0 | 8 | 219 | 1 | 212 | 2.16e-155 | 434 |
MS.gene33739.t1 | MTR_1g110510 | 55.479 | 292 | 121 | 3 | 1 | 292 | 1 | 283 | 7.50e-115 | 333 |
MS.gene33739.t1 | MTR_5g056160 | 56.122 | 294 | 124 | 3 | 9 | 301 | 6 | 295 | 9.09e-114 | 330 |
MS.gene33739.t1 | MTR_5g056140 | 55.903 | 288 | 122 | 3 | 9 | 295 | 6 | 289 | 3.41e-112 | 326 |
MS.gene33739.t1 | MTR_2g012440 | 49.664 | 298 | 137 | 5 | 1 | 292 | 1 | 291 | 5.48e-104 | 306 |
MS.gene33739.t1 | MTR_1g110510 | 51.464 | 239 | 107 | 3 | 1 | 239 | 1 | 230 | 1.10e-85 | 256 |
MS.gene33739.t1 | MTR_2g012440 | 50.000 | 234 | 105 | 4 | 1 | 228 | 1 | 228 | 1.03e-79 | 242 |
MS.gene33739.t1 | MTR_5g056560 | 49.359 | 156 | 75 | 1 | 111 | 262 | 4 | 159 | 2.31e-47 | 157 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene33739.t1 | AT4G21585 | 67.368 | 285 | 93 | 0 | 15 | 299 | 13 | 297 | 3.75e-154 | 433 |
MS.gene33739.t1 | AT4G21585 | 67.368 | 285 | 93 | 0 | 15 | 299 | 13 | 297 | 3.75e-154 | 433 |
MS.gene33739.t1 | AT4G21585 | 61.736 | 311 | 93 | 1 | 15 | 299 | 13 | 323 | 4.67e-148 | 419 |
MS.gene33739.t1 | AT4G21585 | 61.342 | 313 | 93 | 1 | 15 | 299 | 13 | 325 | 5.65e-148 | 418 |
MS.gene33739.t1 | AT4G21600 | 59.790 | 286 | 114 | 1 | 15 | 299 | 9 | 294 | 2.76e-133 | 380 |
MS.gene33739.t1 | AT4G21590 | 59.930 | 287 | 110 | 1 | 15 | 301 | 13 | 294 | 3.46e-129 | 369 |
MS.gene33739.t1 | AT4G21590 | 59.930 | 287 | 110 | 1 | 15 | 301 | 13 | 294 | 3.46e-129 | 369 |
MS.gene33739.t1 | AT1G68290 | 57.241 | 290 | 120 | 3 | 3 | 292 | 4 | 289 | 1.44e-119 | 345 |
MS.gene33739.t1 | AT1G11190 | 53.025 | 281 | 129 | 3 | 20 | 299 | 22 | 300 | 1.24e-109 | 320 |
MS.gene33739.t1 | AT4G21585 | 57.430 | 249 | 80 | 1 | 15 | 237 | 13 | 261 | 1.60e-109 | 318 |
MS.gene33739.t1 | AT4G21585 | 57.430 | 249 | 80 | 1 | 15 | 237 | 13 | 261 | 1.60e-109 | 318 |
Find 53 sgRNAs with CRISPR-Local
Find 233 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GGTCAAATGATGTATCTATT+TGG | 0.146576 | 4.4:+23301118 | MS.gene33739:CDS |
CTCACTTTCTGCAGGATATT+TGG | 0.178656 | 4.4:+23301097 | MS.gene33739:intron |
TCCAACGATAATGGTAATTA+TGG | 0.266386 | 4.4:-23298569 | None:intergenic |
GTTGCCCACTGTTCTGGCTT+GGG | 0.302142 | 4.4:+23298328 | MS.gene33739:CDS |
GTCAAATGATGTATCTATTT+GGG | 0.305236 | 4.4:+23301119 | MS.gene33739:CDS |
CATAAGCATAGATGTGTTAT+TGG | 0.314294 | 4.4:+23299628 | MS.gene33739:CDS |
ATCTTGCTTCAGTTTGCTCT+TGG | 0.330531 | 4.4:+23298532 | MS.gene33739:CDS |
TAGATGACTACTTCCTTTCT+CGG | 0.331349 | 4.4:+23302136 | MS.gene33739:intron |
GGAGACTGTCATGATTCTTA+TGG | 0.364518 | 4.4:+23299604 | MS.gene33739:intron |
AGATCACCTTCAGCAGAATC+TGG | 0.378789 | 4.4:-23298513 | None:intergenic |
ACTGGCGTTGCCCACTGTTC+TGG | 0.379196 | 4.4:+23298322 | MS.gene33739:CDS |
CGTTGCCCACTGTTCTGGCT+TGG | 0.384296 | 4.4:+23298327 | MS.gene33739:CDS |
AAGGACTACTCCAACGATAA+TGG | 0.394603 | 4.4:-23298578 | None:intergenic |
TGATAGTTACACTTGAAATC+TGG | 0.401443 | 4.4:-23298618 | None:intergenic |
GCCATAATTACCATTATCGT+TGG | 0.421805 | 4.4:+23298568 | MS.gene33739:CDS |
TTACCTTCCAAAGTGCTTCC+CGG | 0.426230 | 4.4:-23301627 | None:intergenic |
GCTTGAGCTATTCTGGTCTT+CGG | 0.436083 | 4.4:-23302231 | None:intergenic |
AGATCTTTCAACTATGATAC+AGG | 0.437289 | 4.4:+23300899 | MS.gene33739:CDS |
CCTTTCTCGGTTGCCTATTG+TGG | 0.442854 | 4.4:+23302149 | MS.gene33739:CDS |
CCACAATAGGCAACCGAGAA+AGG | 0.443563 | 4.4:-23302149 | None:intergenic |
TGCAATTTGTAAAATTTCAC+AGG | 0.444507 | 4.4:+23298367 | MS.gene33739:CDS |
GTATTAGGCACGCACCGATC+TGG | 0.449100 | 4.4:-23301171 | None:intergenic |
ACAAAGTTTCTAAAATGGTT+CGG | 0.451645 | 4.4:+23298255 | None:intergenic |
AGTTCCACTGCTGCTATCAC+TGG | 0.478428 | 4.4:+23298304 | MS.gene33739:CDS |
TGCTACACCGGGAAGCACTT+TGG | 0.480035 | 4.4:+23301620 | MS.gene33739:CDS |
TTGCCCACTGTTCTGGCTTG+GGG | 0.483534 | 4.4:+23298329 | MS.gene33739:CDS |
CAATAACAGTTCGTTGGTAC+AGG | 0.485073 | 4.4:+23300201 | MS.gene33739:CDS |
TGCTTCTGAGAGTATTAGCT+TGG | 0.487668 | 4.4:+23301575 | MS.gene33739:CDS |
TAATTATGGCGAATCTCGTC+AGG | 0.488969 | 4.4:-23298555 | None:intergenic |
TCCAGTAAAACCAACATGTA+GGG | 0.497771 | 4.4:-23300162 | None:intergenic |
CTGGTGCAGCCCCTACATGT+TGG | 0.499267 | 4.4:+23300152 | MS.gene33739:intron |
GTTCTGGCTTGGGGAAAAGA+TGG | 0.514348 | 4.4:+23298338 | MS.gene33739:CDS |
GGTTGCCTATTGTGGAGAAA+AGG | 0.523206 | 4.4:+23302157 | MS.gene33739:CDS |
TCGGAGTGAAAATGCGGTTG+AGG | 0.526357 | 4.4:-23302212 | None:intergenic |
GCCTATTGTGGAGAAAAGGC+TGG | 0.553535 | 4.4:+23302161 | MS.gene33739:CDS |
TTACTTCCAGATTCTGCTGA+AGG | 0.557063 | 4.4:+23298507 | MS.gene33739:CDS |
TTTCCCCAAGCCAGAACAGT+GGG | 0.572584 | 4.4:-23298332 | None:intergenic |
GAAACTCAATAACAGTTCGT+TGG | 0.576267 | 4.4:+23300195 | MS.gene33739:CDS |
TGCGTATAAGAATGCTACAC+CGG | 0.595882 | 4.4:+23301608 | MS.gene33739:CDS |
CTCCAGTAAAACCAACATGT+AGG | 0.598758 | 4.4:-23300163 | None:intergenic |
TAACAGTTCGTTGGTACAGG+AGG | 0.598967 | 4.4:+23300204 | MS.gene33739:CDS |
ATCACGCAGCATGTCCAGAT+CGG | 0.600826 | 4.4:+23301157 | MS.gene33739:CDS |
GGTGTATCAATATAATGCAA+AGG | 0.604250 | 4.4:-23298597 | None:intergenic |
ACACCGGGAAGCACTTTGGA+AGG | 0.605297 | 4.4:+23301624 | MS.gene33739:CDS |
CTATGATACAGGCTATTCAA+AGG | 0.608724 | 4.4:+23300910 | MS.gene33739:CDS |
CTGTTATTGAGTTTCCACCT+AGG | 0.618467 | 4.4:-23300187 | None:intergenic |
GTGGAGAAAAGGCTGGCTCA+AGG | 0.620844 | 4.4:+23302168 | MS.gene33739:CDS |
CCAGTAAAACCAACATGTAG+GGG | 0.650544 | 4.4:-23300161 | None:intergenic |
AACGCCAGTGATAGCAGCAG+TGG | 0.653347 | 4.4:-23298308 | None:intergenic |
GCGTATAAGAATGCTACACC+GGG | 0.655576 | 4.4:+23301609 | MS.gene33739:CDS |
TGGTCTTCGGAGTGAAAATG+CGG | 0.658686 | 4.4:-23302218 | None:intergenic |
AATTACAGACAACTTGACAG+AGG | 0.688210 | 4.4:+23299796 | MS.gene33739:intron |
GAGAAAAGGCTGGCTCAAGG+TGG | 0.772047 | 4.4:+23302171 | MS.gene33739:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATCTTTAATAAAATAAAAGA+AGG | - | chr4.4:23300392-23300411 | None:intergenic | 10.0% |
!! | CTAATATATTAAAAATAACA+AGG | + | chr4.4:23299339-23299358 | MS.gene33739:intron | 10.0% |
!! | TAATAAAAATTAAAATCACA+TGG | + | chr4.4:23300062-23300081 | MS.gene33739:intron | 10.0% |
!!! | CAACAATTATTTTTTTTTTT+TGG | + | chr4.4:23298900-23298919 | MS.gene33739:intron | 10.0% |
!!! | TCTATAAACAAAAATATTTT+TGG | + | chr4.4:23301665-23301684 | MS.gene33739:intron | 10.0% |
!! | AAAAAAAATAATTGTTGCAT+TGG | - | chr4.4:23298897-23298916 | None:intergenic | 15.0% |
!! | AAAAATAATAATTGTTGCAT+TGG | - | chr4.4:23299024-23299043 | None:intergenic | 15.0% |
!! | AATAAAATAAAAGAAGGAAA+AGG | - | chr4.4:23300386-23300405 | None:intergenic | 15.0% |
!! | AATTAAAATGTAAGCATTTA+TGG | + | chr4.4:23299707-23299726 | MS.gene33739:intron | 15.0% |
!! | AATTTACTATATTATTGACA+AGG | - | chr4.4:23300806-23300825 | None:intergenic | 15.0% |
!! | ATGGATCTATATATAATAAA+AGG | + | chr4.4:23300528-23300547 | MS.gene33739:intron | 15.0% |
!! | TAAATATGAAATAATGTTGT+TGG | - | chr4.4:23298673-23298692 | None:intergenic | 15.0% |
!! | TATAGTAAATTTAGTATGTT+TGG | + | chr4.4:23300815-23300834 | MS.gene33739:intron | 15.0% |
!!! | ATTAATTGTGTTGATTTTAA+TGG | - | chr4.4:23299148-23299167 | None:intergenic | 15.0% |
!!! | ATTTTGAGAAACAAAAAAAT+GGG | - | chr4.4:23298856-23298875 | None:intergenic | 15.0% |
!!! | TAAATTGATGTTTTTTCTTT+TGG | + | chr4.4:23301001-23301020 | MS.gene33739:intron | 15.0% |
!!! | TATTTTGAGAAACAAAAAAA+TGG | - | chr4.4:23298857-23298876 | None:intergenic | 15.0% |
!! | TAAATAAGAAGCAATTTCAA+AGG | - | chr4.4:23300711-23300730 | None:intergenic | 20.0% |
!! | TAAATAATAGTAGTCGTTTA+AGG | - | chr4.4:23299196-23299215 | None:intergenic | 20.0% |
!! | TATCTAGTAATATGCAATTA+TGG | - | chr4.4:23301485-23301504 | None:intergenic | 20.0% |
!! | TATGCATTTATTCAAATGAT+GGG | + | chr4.4:23300963-23300982 | MS.gene33739:intron | 20.0% |
!! | TATTTGTTCAATTGTTCATT+AGG | - | chr4.4:23299891-23299910 | None:intergenic | 20.0% |
!! | TGTACTTCTTAAATTAAACT+AGG | - | chr4.4:23299914-23299933 | None:intergenic | 20.0% |
!! | TGTTTATAGATGAAAAACTA+GGG | - | chr4.4:23301655-23301674 | None:intergenic | 20.0% |
!! | TTAGAATCAAATGATGAATT+AGG | - | chr4.4:23298426-23298445 | None:intergenic | 20.0% |
!! | TTATGCATTTATTCAAATGA+TGG | + | chr4.4:23300962-23300981 | MS.gene33739:intron | 20.0% |
!! | TTGTTTATAGATGAAAAACT+AGG | - | chr4.4:23301656-23301675 | None:intergenic | 20.0% |
!!! | AATACATAAGGGTATAATAA+TGG | - | chr4.4:23299051-23299070 | None:intergenic | 20.0% |
!!! | ATTACAAAATTTTGACAATG+AGG | - | chr4.4:23301336-23301355 | None:intergenic | 20.0% |
!!! | TAAATTCAAACCCTAATTTT+AGG | + | chr4.4:23298446-23298465 | MS.gene33739:intron | 20.0% |
!!! | TCCTTGTTTTATAAGAAAAA+GGG | + | chr4.4:23301782-23301801 | MS.gene33739:intron | 20.0% |
!!! | TGAATTGAATTTTTAGTGTT+TGG | + | chr4.4:23298773-23298792 | MS.gene33739:intron | 20.0% |
!!! | TTCCTTGTTTTATAAGAAAA+AGG | + | chr4.4:23301781-23301800 | MS.gene33739:intron | 20.0% |
! | AAAAGACAATTATTGTGAGA+CGG | - | chr4.4:23298832-23298851 | None:intergenic | 25.0% |
! | AAATAAATTAGATAGGAGAG+GGG | + | chr4.4:23300499-23300518 | MS.gene33739:intron | 25.0% |
! | AACATCAATTTATCTATGCT+TGG | - | chr4.4:23300993-23301012 | None:intergenic | 25.0% |
! | AACATGAATAGAATTCGATA+AGG | - | chr4.4:23301399-23301418 | None:intergenic | 25.0% |
! | AAGAATGTTAACTTCAAAAC+CGG | + | chr4.4:23300000-23300019 | MS.gene33739:intron | 25.0% |
! | AAGTGAGTAAAAACAATAGT+TGG | - | chr4.4:23301084-23301103 | None:intergenic | 25.0% |
! | ACTAAGATACTCCTAAAATT+AGG | - | chr4.4:23298460-23298479 | None:intergenic | 25.0% |
! | AGAAATAAATTAGATAGGAG+AGG | + | chr4.4:23300497-23300516 | MS.gene33739:intron | 25.0% |
! | ATAAACTCAAAAATTGACCT+TGG | + | chr4.4:23299507-23299526 | MS.gene33739:intron | 25.0% |
! | ATGCAATTATGGAAAATCAA+GGG | - | chr4.4:23301474-23301493 | None:intergenic | 25.0% |
! | ATGCATTTATTCAAATGATG+GGG | + | chr4.4:23300964-23300983 | MS.gene33739:intron | 25.0% |
! | CCACTAACTACAATTAATAA+GGG | + | chr4.4:23299094-23299113 | MS.gene33739:intron | 25.0% |
! | CTAAGATACTCCTAAAATTA+GGG | - | chr4.4:23298459-23298478 | None:intergenic | 25.0% |
! | CTGGAAGAAATAAATTAGAT+AGG | + | chr4.4:23300492-23300511 | MS.gene33739:intron | 25.0% |
! | GAAATAAATTAGATAGGAGA+GGG | + | chr4.4:23300498-23300517 | MS.gene33739:intron | 25.0% |
! | GGATGAAAATCAATACATAA+GGG | - | chr4.4:23299062-23299081 | None:intergenic | 25.0% |
! | GTCAAATGATGTATCTATTT+GGG | + | chr4.4:23301119-23301138 | MS.gene33739:CDS | 25.0% |
! | TATGCAATTATGGAAAATCA+AGG | - | chr4.4:23301475-23301494 | None:intergenic | 25.0% |
! | TCATATTGTTCTTTGTACTT+GGG | + | chr4.4:23301996-23302015 | MS.gene33739:intron | 25.0% |
! | TCCACTAACTACAATTAATA+AGG | + | chr4.4:23299093-23299112 | MS.gene33739:intron | 25.0% |
! | TGCAATTTGTAAAATTTCAC+AGG | + | chr4.4:23298367-23298386 | MS.gene33739:CDS | 25.0% |
! | TGGATGAAAATCAATACATA+AGG | - | chr4.4:23299063-23299082 | None:intergenic | 25.0% |
! | TTGCAATCATCAAAAGTTAT+TGG | - | chr4.4:23302037-23302056 | None:intergenic | 25.0% |
!! | AACCTAACTAACTTGTATAT+TGG | + | chr4.4:23300311-23300330 | MS.gene33739:intron | 25.0% |
!! | AATTCAATTCACTAGCTTAT+CGG | - | chr4.4:23298764-23298783 | None:intergenic | 25.0% |
!! | ACCTAACTAACTTGTATATT+GGG | + | chr4.4:23300312-23300331 | MS.gene33739:intron | 25.0% |
!! | ATGCCATAGATTTTTAAACT+TGG | + | chr4.4:23300578-23300597 | MS.gene33739:intron | 25.0% |
!! | TCCCTTTTTCTTATAAAACA+AGG | - | chr4.4:23301786-23301805 | None:intergenic | 25.0% |
!! | TTCAAAAAATTGTGCTTTTG+AGG | + | chr4.4:23300102-23300121 | MS.gene33739:intron | 25.0% |
!! | TTCTTGTACACATTTTCTTT+TGG | + | chr4.4:23300744-23300763 | MS.gene33739:intron | 25.0% |
!! | TTTTGTATTCTGTTAGAAAG+TGG | + | chr4.4:23300616-23300635 | MS.gene33739:intron | 25.0% |
!!! | AGGGAGTATTAAAATAACAA+GGG | + | chr4.4:23299223-23299242 | MS.gene33739:intron | 25.0% |
!!! | GTGTTCTTTTCTATTTTAAG+AGG | + | chr4.4:23301856-23301875 | MS.gene33739:intron | 25.0% |
!!! | TAAAAACAATAGTTGGTCTT+GGG | - | chr4.4:23301077-23301096 | None:intergenic | 25.0% |
!!! | TGATTTTGCTGATTATATTC+AGG | + | chr4.4:23301550-23301569 | MS.gene33739:intron | 25.0% |
!!! | TGTTTACACTTTTTATTGCT+TGG | + | chr4.4:23301257-23301276 | MS.gene33739:intron | 25.0% |
!!! | TTGAGGTGATATTTTTTTTC+TGG | + | chr4.4:23300119-23300138 | MS.gene33739:intron | 25.0% |
!!! | TTGTTCATTAGGTTTTGAAT+AGG | - | chr4.4:23299880-23299899 | None:intergenic | 25.0% |
AAACTAGAGCAAAATGATGA+AGG | - | chr4.4:23301210-23301229 | None:intergenic | 30.0% | |
AAATGTGTACAAGAACATAG+TGG | - | chr4.4:23300739-23300758 | None:intergenic | 30.0% | |
AAGCAAAGAAATAAGTGTGA+TGG | - | chr4.4:23301027-23301046 | None:intergenic | 30.0% | |
AAGTTGTCTGTAATTAAGAG+AGG | - | chr4.4:23299791-23299810 | None:intergenic | 30.0% | |
ACGCCAAGTTTAAAAATCTA+TGG | - | chr4.4:23300584-23300603 | None:intergenic | 30.0% | |
ACGTTTCTTGGAATTCTTAT+AGG | + | chr4.4:23299583-23299602 | MS.gene33739:intron | 30.0% | |
ACTATATTATTGACAAGGAC+AGG | - | chr4.4:23300801-23300820 | None:intergenic | 30.0% | |
ACTGATGAAAATCAAGGATT+TGG | - | chr4.4:23299945-23299964 | None:intergenic | 30.0% | |
AGAATGTTAACTTCAAAACC+GGG | + | chr4.4:23300001-23300020 | MS.gene33739:intron | 30.0% | |
AGATCTTTCAACTATGATAC+AGG | + | chr4.4:23300899-23300918 | MS.gene33739:CDS | 30.0% | |
AGGTTTATGCACGATTATTA+AGG | - | chr4.4:23299176-23299195 | None:intergenic | 30.0% | |
ATATCATAACTTTACCTGCA+TGG | + | chr4.4:23300420-23300439 | MS.gene33739:intron | 30.0% | |
ATCAAATGATGAATTAGGTG+AGG | - | chr4.4:23298421-23298440 | None:intergenic | 30.0% | |
ATCAGTGGCTTACTATAATA+TGG | + | chr4.4:23299959-23299978 | MS.gene33739:intron | 30.0% | |
ATGACAAAAATAGACCTGTT+TGG | - | chr4.4:23299481-23299500 | None:intergenic | 30.0% | |
CAAATTACTTCAACGTTTCT+TGG | + | chr4.4:23299571-23299590 | MS.gene33739:intron | 30.0% | |
CATAAGCATAGATGTGTTAT+TGG | + | chr4.4:23299628-23299647 | MS.gene33739:CDS | 30.0% | |
CCAAATGAATACAAGAAACA+TGG | - | chr4.4:23301309-23301328 | None:intergenic | 30.0% | |
CCATGTTTCTTGTATTCATT+TGG | + | chr4.4:23301306-23301325 | MS.gene33739:intron | 30.0% | |
CCCTTATTAATTGTAGTTAG+TGG | - | chr4.4:23299097-23299116 | None:intergenic | 30.0% | |
CGACTACTATTATTTAGAGA+CGG | + | chr4.4:23299200-23299219 | MS.gene33739:intron | 30.0% | |
CTCATATTGTTCTTTGTACT+TGG | + | chr4.4:23301995-23302014 | MS.gene33739:intron | 30.0% | |
GAACAATATGAGTATATGAC+AGG | - | chr4.4:23301987-23302006 | None:intergenic | 30.0% | |
GAGGAAAGTAAGTAAATTCA+AGG | - | chr4.4:23299772-23299791 | None:intergenic | 30.0% | |
GGTCAAATGATGTATCTATT+TGG | + | chr4.4:23301118-23301137 | MS.gene33739:CDS | 30.0% | |
GGTGTATCAATATAATGCAA+AGG | - | chr4.4:23298600-23298619 | None:intergenic | 30.0% | |
TAACTACTTACATACAACTG+AGG | + | chr4.4:23301510-23301529 | MS.gene33739:intron | 30.0% | |
TAAGAAGCAATTTCAAAGGT+AGG | - | chr4.4:23300707-23300726 | None:intergenic | 30.0% | |
TACTATTATTTAGAGACGGA+GGG | + | chr4.4:23299204-23299223 | MS.gene33739:intron | 30.0% | |
TATTAAAATAACAAGGGGGT+TGG | + | chr4.4:23299229-23299248 | MS.gene33739:intron | 30.0% | |
TCAGTGGCTTACTATAATAT+GGG | + | chr4.4:23299960-23299979 | MS.gene33739:intron | 30.0% | |
TGATAGTTACACTTGAAATC+TGG | - | chr4.4:23298621-23298640 | None:intergenic | 30.0% | |
TGCATTTATTCAAATGATGG+GGG | + | chr4.4:23300965-23300984 | MS.gene33739:intron | 30.0% | |
TGCTTGTTTCATTTGAAGAT+AGG | + | chr4.4:23299745-23299764 | MS.gene33739:intron | 30.0% | |
TGGACACATTAAGAAATCTA+AGG | - | chr4.4:23299542-23299561 | None:intergenic | 30.0% | |
! | AAAATTTTGTAATCTTCGCC+TGG | + | chr4.4:23301343-23301362 | MS.gene33739:intron | 30.0% |
! | AAATCCTTGATTTTCATCAG+TGG | + | chr4.4:23299944-23299963 | MS.gene33739:intron | 30.0% |
! | ATCAATTCACTGTATTTTCC+AGG | - | chr4.4:23301364-23301383 | None:intergenic | 30.0% |
! | ATCACACTTATTTCTTTGCT+TGG | + | chr4.4:23301026-23301045 | MS.gene33739:intron | 30.0% |
! | ATGTTCTTGTCACATTTTGT+TGG | + | chr4.4:23299824-23299843 | MS.gene33739:CDS | 30.0% |
! | GGAGTATTAAAATAACAAGG+GGG | + | chr4.4:23299225-23299244 | MS.gene33739:intron | 30.0% |
! | GTAAAAACAATAGTTGGTCT+TGG | - | chr4.4:23301078-23301097 | None:intergenic | 30.0% |
! | TATACAAGTTAGTTAGGTTG+CGG | - | chr4.4:23300310-23300329 | None:intergenic | 30.0% |
! | TCCAACGATAATGGTAATTA+TGG | - | chr4.4:23298572-23298591 | None:intergenic | 30.0% |
! | TGAGTATATGACAGGTATTT+TGG | - | chr4.4:23301979-23301998 | None:intergenic | 30.0% |
! | TGTTCTTGTCACATTTTGTT+GGG | + | chr4.4:23299825-23299844 | MS.gene33739:CDS | 30.0% |
!! | ATGACAGGTATTTTGGATTT+TGG | - | chr4.4:23301972-23301991 | None:intergenic | 30.0% |
!! | GAGGGAGTATTAAAATAACA+AGG | + | chr4.4:23299222-23299241 | MS.gene33739:intron | 30.0% |
!! | GGGAGTATTAAAATAACAAG+GGG | + | chr4.4:23299224-23299243 | MS.gene33739:intron | 30.0% |
AAACTACCTTACAAAAGACG+AGG | - | chr4.4:23301721-23301740 | None:intergenic | 35.0% | |
AATTACAGACAACTTGACAG+AGG | + | chr4.4:23299796-23299815 | MS.gene33739:intron | 35.0% | |
ACAAACACTCCATGAACAAT+TGG | - | chr4.4:23300346-23300365 | None:intergenic | 35.0% | |
AGTTAGTGGAGTAGTTAAGT+TGG | - | chr4.4:23299083-23299102 | None:intergenic | 35.0% | |
CTACTATTATTTAGAGACGG+AGG | + | chr4.4:23299203-23299222 | MS.gene33739:intron | 35.0% | |
CTATGATACAGGCTATTCAA+AGG | + | chr4.4:23300910-23300929 | MS.gene33739:CDS | 35.0% | |
GAAACTCAATAACAGTTCGT+TGG | + | chr4.4:23300195-23300214 | MS.gene33739:CDS | 35.0% | |
GCCATAATTACCATTATCGT+TGG | + | chr4.4:23298568-23298587 | MS.gene33739:CDS | 35.0% | |
GCCCAATATACAAGTTAGTT+AGG | - | chr4.4:23300316-23300335 | None:intergenic | 35.0% | |
GTATGAGAAGTCATTCTTCA+GGG | - | chr4.4:23302094-23302113 | None:intergenic | 35.0% | |
TAACAGCTATCAGCTTATCA+TGG | - | chr4.4:23298716-23298735 | None:intergenic | 35.0% | |
TAAGCCACTGATGAAAATCA+AGG | - | chr4.4:23299951-23299970 | None:intergenic | 35.0% | |
TAGATGACTACTTCCTTTCT+CGG | + | chr4.4:23302136-23302155 | MS.gene33739:intron | 35.0% | |
TAGTGTAGTGAAGAAGGTTA+GGG | - | chr4.4:23298396-23298415 | None:intergenic | 35.0% | |
TCCAGTAAAACCAACATGTA+GGG | - | chr4.4:23300165-23300184 | None:intergenic | 35.0% | |
TCCATGAACAATTGGAGAAA+AGG | - | chr4.4:23300338-23300357 | None:intergenic | 35.0% | |
TGGCTTACTATAATATGGGT+AGG | + | chr4.4:23299964-23299983 | MS.gene33739:intron | 35.0% | |
TGTATGAGAAGTCATTCTTC+AGG | - | chr4.4:23302095-23302114 | None:intergenic | 35.0% | |
! | CATTGTTTTCCTTAGCTTCA+TGG | + | chr4.4:23301754-23301773 | MS.gene33739:intron | 35.0% |
! | GAAGTAATTTGTGAAGCAGA+TGG | - | chr4.4:23299562-23299581 | None:intergenic | 35.0% |
! | GTATGCTATGCTATTTGATC+AGG | + | chr4.4:23300266-23300285 | MS.gene33739:intron | 35.0% |
! | GTTCTTGTCACATTTTGTTG+GGG | + | chr4.4:23299826-23299845 | MS.gene33739:CDS | 35.0% |
!! | TCTGCTCTGAAAAAGTTCTA+TGG | + | chr4.4:23300873-23300892 | MS.gene33739:CDS | 35.0% |
!! | TGTTTTTACTCACTTTCTGC+AGG | + | chr4.4:23301089-23301108 | MS.gene33739:intron | 35.0% |
!!! | AGTATGTTTGGTTTTGTTCC+AGG | + | chr4.4:23300827-23300846 | MS.gene33739:intron | 35.0% |
!!! | TTAGGTTTTGAATAGGAACC+AGG | - | chr4.4:23299873-23299892 | None:intergenic | 35.0% |
!!! | TTTGGTTTTGTTCCAGGTAT+GGG | + | chr4.4:23300833-23300852 | MS.gene33739:intron | 35.0% |
!!! | TTTTTCTGGTTCCCATTTTC+TGG | + | chr4.4:23300133-23300152 | MS.gene33739:intron | 35.0% |
AACTCAACTCGTTTGAGCTA+AGG | + | chr4.4:23299254-23299273 | MS.gene33739:intron | 40.0% | |
AACTTCAAAACCGGGATTGA+TGG | + | chr4.4:23300009-23300028 | MS.gene33739:intron | 40.0% | |
AAGGACTACTCCAACGATAA+TGG | - | chr4.4:23298581-23298600 | None:intergenic | 40.0% | |
ACTCAACTCGTTTGAGCTAA+GGG | + | chr4.4:23299255-23299274 | MS.gene33739:intron | 40.0% | |
ACTTCAAAACCGGGATTGAT+GGG | + | chr4.4:23300010-23300029 | MS.gene33739:intron | 40.0% | |
AGAAAACCTTGTCACCAAAC+AGG | + | chr4.4:23299464-23299483 | MS.gene33739:intron | 40.0% | |
ATAACCATTCCCATCAATCC+CGG | - | chr4.4:23300022-23300041 | None:intergenic | 40.0% | |
CAAAATGATGAAGGTGGAAC+AGG | - | chr4.4:23301201-23301220 | None:intergenic | 40.0% | |
CAATAACAGTTCGTTGGTAC+AGG | + | chr4.4:23300201-23300220 | MS.gene33739:CDS | 40.0% | |
CCAGTAAAACCAACATGTAG+GGG | - | chr4.4:23300164-23300183 | None:intergenic | 40.0% | |
CTAGAGCAAAATGATGAAGG+TGG | - | chr4.4:23301207-23301226 | None:intergenic | 40.0% | |
CTCACTTTCTGCAGGATATT+TGG | + | chr4.4:23301097-23301116 | MS.gene33739:intron | 40.0% | |
CTCCAGTAAAACCAACATGT+AGG | - | chr4.4:23300166-23300185 | None:intergenic | 40.0% | |
CTGTCAAAACACAAACACAC+AGG | - | chr4.4:23301441-23301460 | None:intergenic | 40.0% | |
CTGTTATTGAGTTTCCACCT+AGG | - | chr4.4:23300190-23300209 | None:intergenic | 40.0% | |
GACAATTATTGTGAGACGGA+TGG | - | chr4.4:23298828-23298847 | None:intergenic | 40.0% | |
GGAGACTGTCATGATTCTTA+TGG | + | chr4.4:23299604-23299623 | MS.gene33739:intron | 40.0% | |
GGTGGAACAGGAAATGTATT+AGG | - | chr4.4:23301189-23301208 | None:intergenic | 40.0% | |
GTAGTGTAGTGAAGAAGGTT+AGG | - | chr4.4:23298397-23298416 | None:intergenic | 40.0% | |
TAATCATGTTGTCCCATACC+TGG | - | chr4.4:23300848-23300867 | None:intergenic | 40.0% | |
TAATTATGGCGAATCTCGTC+AGG | - | chr4.4:23298558-23298577 | None:intergenic | 40.0% | |
TGCGTATAAGAATGCTACAC+CGG | + | chr4.4:23301608-23301627 | MS.gene33739:CDS | 40.0% | |
TGTACAAGAACATAGTGGCA+AGG | - | chr4.4:23300734-23300753 | None:intergenic | 40.0% | |
TTACTTCCAGATTCTGCTGA+AGG | + | chr4.4:23298507-23298526 | MS.gene33739:CDS | 40.0% | |
! | AATAGACCTGTTTGGTGACA+AGG | - | chr4.4:23299473-23299492 | None:intergenic | 40.0% |
! | ATCTTGCTTCAGTTTGCTCT+TGG | + | chr4.4:23298532-23298551 | MS.gene33739:CDS | 40.0% |
! | GCCTTTTCTCCAATTGTTCA+TGG | + | chr4.4:23300334-23300353 | MS.gene33739:intron | 40.0% |
! | TTCACTAGCTTATCGGCTAT+CGG | - | chr4.4:23298757-23298776 | None:intergenic | 40.0% |
! | TTCATCAGGTTTGTTCTTCC+TGG | + | chr4.4:23299852-23299871 | MS.gene33739:intron | 40.0% |
! | TTTCCTCCTCGTCTTTTGTA+AGG | + | chr4.4:23301712-23301731 | MS.gene33739:intron | 40.0% |
! | TTTTGTTGGGGATGTTCATC+AGG | + | chr4.4:23299838-23299857 | MS.gene33739:CDS | 40.0% |
!! | TGCTTCTGAGAGTATTAGCT+TGG | + | chr4.4:23301575-23301594 | MS.gene33739:CDS | 40.0% |
!!! | GTTTGGTTTTGTTCCAGGTA+TGG | + | chr4.4:23300832-23300851 | MS.gene33739:intron | 40.0% |
!!! | TGCTGCTTTTTAGTTGTGAC+TGG | + | chr4.4:23300473-23300492 | MS.gene33739:intron | 40.0% |
!!! | TGTTTGTGTTTTGACAGCCA+TGG | + | chr4.4:23301444-23301463 | MS.gene33739:intron | 40.0% |
AAAACCGGGATTGATGGGAA+TGG | + | chr4.4:23300015-23300034 | MS.gene33739:intron | 45.0% | |
AGATCACCTTCAGCAGAATC+TGG | - | chr4.4:23298516-23298535 | None:intergenic | 45.0% | |
AGGAAGCTTCCATGAAGCTA+AGG | - | chr4.4:23301766-23301785 | None:intergenic | 45.0% | |
ATCCTATAGAGCTTCCATGC+AGG | - | chr4.4:23300437-23300456 | None:intergenic | 45.0% | |
CTACCTTACAAAAGACGAGG+AGG | - | chr4.4:23301718-23301737 | None:intergenic | 45.0% | |
GAACCTTTAGCTACACATCC+TGG | - | chr4.4:23300683-23300702 | None:intergenic | 45.0% | |
GAGCAAGAATGCAATGCATG+AGG | - | chr4.4:23301891-23301910 | None:intergenic | 45.0% | |
GAGGAGTAGTGTAGTGAAGA+AGG | - | chr4.4:23298402-23298421 | None:intergenic | 45.0% | |
GATAGGAGAGGGGAAGATTA+TGG | + | chr4.4:23300509-23300528 | MS.gene33739:intron | 45.0% | |
GCGTATAAGAATGCTACACC+GGG | + | chr4.4:23301609-23301628 | MS.gene33739:CDS | 45.0% | |
GGAAAATCAAGGGAAGTCCA+TGG | - | chr4.4:23301464-23301483 | None:intergenic | 45.0% | |
GGTTGCCTATTGTGGAGAAA+AGG | + | chr4.4:23302157-23302176 | MS.gene33739:CDS | 45.0% | |
TAACAGTTCGTTGGTACAGG+AGG | + | chr4.4:23300204-23300223 | MS.gene33739:CDS | 45.0% | |
TACCTGCATGGAAGCTCTAT+AGG | + | chr4.4:23300432-23300451 | MS.gene33739:intron | 45.0% | |
TACTTGGGCATCAATGCACA+TGG | + | chr4.4:23302011-23302030 | MS.gene33739:intron | 45.0% | |
TAGCCAGGATGTGTAGCTAA+AGG | + | chr4.4:23300677-23300696 | MS.gene33739:intron | 45.0% | |
TGGTCTTCGGAGTGAAAATG+CGG | - | chr4.4:23302221-23302240 | None:intergenic | 45.0% | |
TGTCATATTCTCACCTAGCC+AGG | + | chr4.4:23300662-23300681 | MS.gene33739:intron | 45.0% | |
TTTAGCTACACATCCTGGCT+AGG | - | chr4.4:23300678-23300697 | None:intergenic | 45.0% | |
! | ATCTAAGGCTCTGTTTGCCA+AGG | - | chr4.4:23299527-23299546 | None:intergenic | 45.0% |
! | GCTTGAGCTATTCTGGTCTT+CGG | - | chr4.4:23302234-23302253 | None:intergenic | 45.0% |
! | TTACCTTCCAAAGTGCTTCC+CGG | - | chr4.4:23301630-23301649 | None:intergenic | 45.0% |
!! | GTTGGTCTTGGGTCATATAC+AGG | - | chr4.4:23301066-23301085 | None:intergenic | 45.0% |
!!! | CCCCTACATGTTGGTTTTAC+TGG | + | chr4.4:23300161-23300180 | MS.gene33739:CDS | 45.0% |
!!! | GTTGGTTTTACTGGAGACCT+AGG | + | chr4.4:23300170-23300189 | MS.gene33739:CDS | 45.0% |
!! | TAATATATTAAAAATAACAA+GGG | + | chr4.4:23299340-23299359 | MS.gene33739:intron | 5.0% |
AGTTCCACTGCTGCTATCAC+TGG | + | chr4.4:23298304-23298323 | MS.gene33739:CDS | 50.0% | |
ATCACGCAGCATGTCCAGAT+CGG | + | chr4.4:23301157-23301176 | MS.gene33739:CDS | 50.0% | |
CCACAATAGGCAACCGAGAA+AGG | - | chr4.4:23302152-23302171 | None:intergenic | 50.0% | |
CCTTTCTCGGTTGCCTATTG+TGG | + | chr4.4:23302149-23302168 | MS.gene33739:CDS | 50.0% | |
GCCTATTGTGGAGAAAAGGC+TGG | + | chr4.4:23302161-23302180 | MS.gene33739:CDS | 50.0% | |
TAGGGGCTGCACCAGAAAAT+GGG | - | chr4.4:23300147-23300166 | None:intergenic | 50.0% | |
TCGGAGTGAAAATGCGGTTG+AGG | - | chr4.4:23302215-23302234 | None:intergenic | 50.0% | |
TTTCCCCAAGCCAGAACAGT+GGG | - | chr4.4:23298335-23298354 | None:intergenic | 50.0% | |
! | GCCAGCCTTTTCTCCACAAT+AGG | - | chr4.4:23302165-23302184 | None:intergenic | 50.0% |
! | GGTTTTACTGGAGACCTAGG+TGG | + | chr4.4:23300173-23300192 | MS.gene33739:CDS | 50.0% |
! | TTTTCCCCAAGCCAGAACAG+TGG | - | chr4.4:23298336-23298355 | None:intergenic | 50.0% |
!! | GTTCTGGCTTGGGGAAAAGA+TGG | + | chr4.4:23298338-23298357 | MS.gene33739:CDS | 50.0% |
AACGCCAGTGATAGCAGCAG+TGG | - | chr4.4:23298311-23298330 | None:intergenic | 55.0% | |
GTAGGGGCTGCACCAGAAAA+TGG | - | chr4.4:23300148-23300167 | None:intergenic | 55.0% | |
! | GAGAAAAGGCTGGCTCAAGG+TGG | + | chr4.4:23302171-23302190 | MS.gene33739:CDS | 55.0% |
! | GTATTAGGCACGCACCGATC+TGG | - | chr4.4:23301174-23301193 | None:intergenic | 55.0% |
! | GTGGAGAAAAGGCTGGCTCA+AGG | + | chr4.4:23302168-23302187 | MS.gene33739:CDS | 55.0% |
!! | ACACCGGGAAGCACTTTGGA+AGG | + | chr4.4:23301624-23301643 | MS.gene33739:CDS | 55.0% |
!! | GTTGCCCACTGTTCTGGCTT+GGG | + | chr4.4:23298328-23298347 | MS.gene33739:CDS | 55.0% |
!! | TGCTACACCGGGAAGCACTT+TGG | + | chr4.4:23301620-23301639 | MS.gene33739:CDS | 55.0% |
!! | TTGCCCACTGTTCTGGCTTG+GGG | + | chr4.4:23298329-23298348 | MS.gene33739:CDS | 55.0% |
ACTGGCGTTGCCCACTGTTC+TGG | + | chr4.4:23298322-23298341 | MS.gene33739:CDS | 60.0% | |
CTGGTGCAGCCCCTACATGT+TGG | + | chr4.4:23300152-23300171 | MS.gene33739:intron | 60.0% | |
! | CGTTGCCCACTGTTCTGGCT+TGG | + | chr4.4:23298327-23298346 | MS.gene33739:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.4 | gene | 23298269 | 23302257 | 23298269 | ID=MS.gene33739 |
chr4.4 | mRNA | 23298269 | 23302257 | 23298269 | ID=MS.gene33739.t1;Parent=MS.gene33739 |
chr4.4 | exon | 23298269 | 23298388 | 23298269 | ID=MS.gene33739.t1.exon1;Parent=MS.gene33739.t1 |
chr4.4 | CDS | 23298269 | 23298388 | 23298269 | ID=cds.MS.gene33739.t1;Parent=MS.gene33739.t1 |
chr4.4 | exon | 23298468 | 23298648 | 23298468 | ID=MS.gene33739.t1.exon2;Parent=MS.gene33739.t1 |
chr4.4 | CDS | 23298468 | 23298648 | 23298468 | ID=cds.MS.gene33739.t1;Parent=MS.gene33739.t1 |
chr4.4 | exon | 23299605 | 23299715 | 23299605 | ID=MS.gene33739.t1.exon3;Parent=MS.gene33739.t1 |
chr4.4 | CDS | 23299605 | 23299715 | 23299605 | ID=cds.MS.gene33739.t1;Parent=MS.gene33739.t1 |
chr4.4 | exon | 23299804 | 23299859 | 23299804 | ID=MS.gene33739.t1.exon4;Parent=MS.gene33739.t1 |
chr4.4 | CDS | 23299804 | 23299859 | 23299804 | ID=cds.MS.gene33739.t1;Parent=MS.gene33739.t1 |
chr4.4 | exon | 23300161 | 23300244 | 23300161 | ID=MS.gene33739.t1.exon5;Parent=MS.gene33739.t1 |
chr4.4 | CDS | 23300161 | 23300244 | 23300161 | ID=cds.MS.gene33739.t1;Parent=MS.gene33739.t1 |
chr4.4 | exon | 23300849 | 23300941 | 23300849 | ID=MS.gene33739.t1.exon6;Parent=MS.gene33739.t1 |
chr4.4 | CDS | 23300849 | 23300941 | 23300849 | ID=cds.MS.gene33739.t1;Parent=MS.gene33739.t1 |
chr4.4 | exon | 23301111 | 23301178 | 23301111 | ID=MS.gene33739.t1.exon7;Parent=MS.gene33739.t1 |
chr4.4 | CDS | 23301111 | 23301178 | 23301111 | ID=cds.MS.gene33739.t1;Parent=MS.gene33739.t1 |
chr4.4 | exon | 23301572 | 23301645 | 23301572 | ID=MS.gene33739.t1.exon8;Parent=MS.gene33739.t1 |
chr4.4 | CDS | 23301572 | 23301645 | 23301572 | ID=cds.MS.gene33739.t1;Parent=MS.gene33739.t1 |
chr4.4 | exon | 23302139 | 23302257 | 23302139 | ID=MS.gene33739.t1.exon9;Parent=MS.gene33739.t1 |
chr4.4 | CDS | 23302139 | 23302257 | 23302139 | ID=cds.MS.gene33739.t1;Parent=MS.gene33739.t1 |
Gene Sequence |
Protein sequence |