Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene035220.t1 | XP_013457108.1 | 97.7 | 300 | 7 | 0 | 2 | 301 | 39 | 338 | 3.70E-172 | 614 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene035220.t1 | F4JJL0 | 67.4 | 285 | 93 | 0 | 15 | 299 | 13 | 297 | 7.4e-121 | 434.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene035220.t1 | A0A072UMV8 | 97.7 | 300 | 7 | 0 | 2 | 301 | 39 | 338 | 2.7e-172 | 614.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene035220 | MS.gene047520 | PPI |
| MS.gene63052 | MS.gene035220 | PPI |
| MS.gene035220 | MS.gene01769 | PPI |
| MS.gene053826 | MS.gene035220 | PPI |
| MS.gene035220 | MS.gene029418 | PPI |
| MS.gene035220 | MS.gene64615 | PPI |
| MS.gene035220 | MS.gene32189 | PPI |
| MS.gene035220 | MS.gene002383 | PPI |
| MS.gene035220 | MS.gene01361 | PPI |
| MS.gene035220 | MS.gene052539 | PPI |
| MS.gene035220 | MS.gene65673 | PPI |
| MS.gene32189 | MS.gene035220 | PPI |
| MS.gene035220 | MS.gene33739 | PPI |
| MS.gene035220 | MS.gene65672 | PPI |
| MS.gene035220 | MS.gene065148 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene035220.t1 | MTR_4g090610 | 97.667 | 300 | 7 | 0 | 2 | 301 | 84 | 383 | 0.0 | 620 |
| MS.gene035220.t1 | MTR_4g090610 | 97.667 | 300 | 7 | 0 | 2 | 301 | 39 | 338 | 0.0 | 617 |
| MS.gene035220.t1 | MTR_4g090610 | 97.959 | 294 | 6 | 0 | 8 | 301 | 1 | 294 | 0.0 | 606 |
| MS.gene035220.t1 | MTR_4g090610 | 96.789 | 218 | 7 | 0 | 2 | 219 | 39 | 256 | 2.95e-159 | 446 |
| MS.gene035220.t1 | MTR_4g090610 | 97.170 | 212 | 6 | 0 | 8 | 219 | 1 | 212 | 1.78e-155 | 434 |
| MS.gene035220.t1 | MTR_1g110510 | 55.479 | 292 | 121 | 3 | 1 | 292 | 1 | 283 | 3.04e-114 | 331 |
| MS.gene035220.t1 | MTR_5g056160 | 55.782 | 294 | 125 | 3 | 9 | 301 | 6 | 295 | 1.66e-112 | 327 |
| MS.gene035220.t1 | MTR_5g056140 | 55.556 | 288 | 123 | 3 | 9 | 295 | 6 | 289 | 3.76e-111 | 323 |
| MS.gene035220.t1 | MTR_2g012440 | 49.664 | 298 | 137 | 5 | 1 | 292 | 1 | 291 | 3.87e-104 | 306 |
| MS.gene035220.t1 | MTR_1g110510 | 51.464 | 239 | 107 | 3 | 1 | 239 | 1 | 230 | 3.38e-85 | 255 |
| MS.gene035220.t1 | MTR_2g012440 | 50.000 | 234 | 105 | 4 | 1 | 228 | 1 | 228 | 8.25e-80 | 242 |
| MS.gene035220.t1 | MTR_5g056560 | 56.000 | 125 | 55 | 0 | 138 | 262 | 35 | 159 | 5.29e-47 | 157 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene035220.t1 | AT4G21585 | 67.368 | 285 | 93 | 0 | 15 | 299 | 13 | 297 | 2.67e-154 | 433 |
| MS.gene035220.t1 | AT4G21585 | 67.368 | 285 | 93 | 0 | 15 | 299 | 13 | 297 | 2.67e-154 | 433 |
| MS.gene035220.t1 | AT4G21585 | 61.736 | 311 | 93 | 1 | 15 | 299 | 13 | 323 | 4.23e-148 | 419 |
| MS.gene035220.t1 | AT4G21585 | 61.342 | 313 | 93 | 1 | 15 | 299 | 13 | 325 | 5.53e-148 | 418 |
| MS.gene035220.t1 | AT4G21600 | 60.140 | 286 | 113 | 1 | 15 | 299 | 9 | 294 | 4.40e-134 | 382 |
| MS.gene035220.t1 | AT4G21590 | 60.279 | 287 | 109 | 1 | 15 | 301 | 13 | 294 | 5.75e-130 | 372 |
| MS.gene035220.t1 | AT4G21590 | 60.279 | 287 | 109 | 1 | 15 | 301 | 13 | 294 | 5.75e-130 | 372 |
| MS.gene035220.t1 | AT1G68290 | 57.241 | 290 | 120 | 3 | 3 | 292 | 4 | 289 | 1.11e-119 | 345 |
| MS.gene035220.t1 | AT1G11190 | 53.025 | 281 | 129 | 3 | 20 | 299 | 22 | 300 | 8.10e-110 | 321 |
| MS.gene035220.t1 | AT4G21585 | 57.430 | 249 | 80 | 1 | 15 | 237 | 13 | 261 | 9.59e-110 | 319 |
| MS.gene035220.t1 | AT4G21585 | 57.430 | 249 | 80 | 1 | 15 | 237 | 13 | 261 | 9.59e-110 | 319 |
Find 53 sgRNAs with CRISPR-Local
Find 228 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTCAAATGATGTATCTATT+TGG | 0.146576 | 4.2:+21536448 | MS.gene035220:CDS |
| CTCACTTTCTGCAGGATATT+TGG | 0.178656 | 4.2:+21536427 | MS.gene035220:intron |
| TCCAACGATAATGGTAATTA+TGG | 0.266386 | 4.2:-21534084 | None:intergenic |
| GTTGCCCACTGTTCTGGCTT+GGG | 0.302142 | 4.2:+21533846 | MS.gene035220:CDS |
| GTCAAATGATGTATCTATTT+GGG | 0.305236 | 4.2:+21536449 | MS.gene035220:CDS |
| ATCTTGCTTCAGTTTGCTCT+TGG | 0.330531 | 4.2:+21534047 | MS.gene035220:CDS |
| TAGATGACTACTTCCTTTCT+CGG | 0.331349 | 4.2:+21537466 | MS.gene035220:intron |
| GGAGACTGTCATGATTCTTA+TGG | 0.364518 | 4.2:+21534934 | MS.gene035220:intron |
| CATAAGCATAGATGTGTTAC+TGG | 0.369077 | 4.2:+21534958 | MS.gene035220:CDS |
| AGATCACCTTCAGCAGAATC+TGG | 0.378789 | 4.2:-21534028 | None:intergenic |
| ACTGGCGTTGCCCACTGTTC+TGG | 0.379196 | 4.2:+21533840 | MS.gene035220:CDS |
| CGTTGCCCACTGTTCTGGCT+TGG | 0.384296 | 4.2:+21533845 | MS.gene035220:CDS |
| AAGGACTACTCCAACGATAA+TGG | 0.394603 | 4.2:-21534093 | None:intergenic |
| TGATAATTACACTTGAAATC+TGG | 0.401443 | 4.2:-21534133 | None:intergenic |
| GCCATAATTACCATTATCGT+TGG | 0.421805 | 4.2:+21534083 | MS.gene035220:CDS |
| TTACCTTCCAAAGTGCTTCC+CGG | 0.426230 | 4.2:-21536957 | None:intergenic |
| GCTTGAGCTATTCTGGTCTT+CGG | 0.436083 | 4.2:-21537561 | None:intergenic |
| AGATCTTTCAACTATGATAC+AGG | 0.437289 | 4.2:+21536229 | MS.gene035220:CDS |
| CCTTTCTCGGTTGCCTATTG+TGG | 0.442854 | 4.2:+21537479 | MS.gene035220:CDS |
| CCACAATAGGCAACCGAGAA+AGG | 0.443563 | 4.2:-21537479 | None:intergenic |
| TGCAATTTGTAAAATTTCAC+AGG | 0.444507 | 4.2:+21533885 | MS.gene035220:CDS |
| GTATTAGGCACGCACCGATC+TGG | 0.449100 | 4.2:-21536501 | None:intergenic |
| ACAAAGTTTCTAAAATGGTT+CGG | 0.451645 | 4.2:+21533773 | None:intergenic |
| CAATAGCAGTTCGTTGGTAC+AGG | 0.462110 | 4.2:+21535531 | MS.gene035220:CDS |
| AGTTCCACTGCTGCTATCAC+TGG | 0.478428 | 4.2:+21533822 | MS.gene035220:CDS |
| TGCTACACCGGGAAGCACTT+TGG | 0.480035 | 4.2:+21536950 | MS.gene035220:CDS |
| TTGCCCACTGTTCTGGCTTG+GGG | 0.483534 | 4.2:+21533847 | MS.gene035220:CDS |
| TGCTTCTGAGAGTATTAGCT+TGG | 0.487668 | 4.2:+21536905 | MS.gene035220:CDS |
| TAATTATGGCGAATCTCGTC+AGG | 0.488969 | 4.2:-21534070 | None:intergenic |
| TCCAGTAAAACCAACATGTA+GGG | 0.497771 | 4.2:-21535492 | None:intergenic |
| CTGGTGCAGCCCCTACATGT+TGG | 0.499267 | 4.2:+21535482 | MS.gene035220:intron |
| GTTCTGGCTTGGGGAAAAGA+TGG | 0.514348 | 4.2:+21533856 | MS.gene035220:CDS |
| GGTTGCCTATTGTGGAGAAA+AGG | 0.523206 | 4.2:+21537487 | MS.gene035220:CDS |
| TCGGAGTGAAAATGCGGTTG+AGG | 0.526357 | 4.2:-21537542 | None:intergenic |
| GCCTATTGTGGAGAAAAGGC+TGG | 0.553535 | 4.2:+21537491 | MS.gene035220:CDS |
| TTACTTCCAGATTCTGCTGA+AGG | 0.557063 | 4.2:+21534022 | MS.gene035220:CDS |
| TTTCCCCAAGCCAGAACAGT+GGG | 0.572584 | 4.2:-21533850 | None:intergenic |
| TAGCAGTTCGTTGGTACAGG+AGG | 0.588699 | 4.2:+21535534 | MS.gene035220:CDS |
| TGCGTATAAGAATGCTACAC+CGG | 0.595882 | 4.2:+21536938 | MS.gene035220:CDS |
| CTCCAGTAAAACCAACATGT+AGG | 0.598758 | 4.2:-21535493 | None:intergenic |
| ATCACGCAGCATGTCCAGAT+CGG | 0.600826 | 4.2:+21536487 | MS.gene035220:CDS |
| GGTGTATCAATATAATGCAA+AGG | 0.604250 | 4.2:-21534112 | None:intergenic |
| ACACCGGGAAGCACTTTGGA+AGG | 0.605297 | 4.2:+21536954 | MS.gene035220:CDS |
| CTATGATACAGGCTATTCAA+AGG | 0.608724 | 4.2:+21536240 | MS.gene035220:CDS |
| GAAACTCAATAGCAGTTCGT+TGG | 0.614301 | 4.2:+21535525 | MS.gene035220:CDS |
| GTGGAGAAAAGGCTGGCTCA+AGG | 0.620844 | 4.2:+21537498 | MS.gene035220:CDS |
| CCAGTAAAACCAACATGTAG+GGG | 0.650544 | 4.2:-21535491 | None:intergenic |
| AACGCCAGTGATAGCAGCAG+TGG | 0.653347 | 4.2:-21533826 | None:intergenic |
| GCGTATAAGAATGCTACACC+GGG | 0.655576 | 4.2:+21536939 | MS.gene035220:CDS |
| TGGTCTTCGGAGTGAAAATG+CGG | 0.658686 | 4.2:-21537548 | None:intergenic |
| CTGCTATTGAGTTTCCACCT+AGG | 0.664833 | 4.2:-21535517 | None:intergenic |
| AATTACAGACAACTTGACAG+AGG | 0.688210 | 4.2:+21535126 | MS.gene035220:intron |
| GAGAAAAGGCTGGCTCAAGG+TGG | 0.772047 | 4.2:+21537501 | MS.gene035220:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATCTTTAATAAAATAAAAGA+AGG | - | chr4.2:21535722-21535741 | None:intergenic | 10.0% |
| !! | TAATAAAAATTAAAATCACA+TGG | + | chr4.2:21535392-21535411 | MS.gene035220:intron | 10.0% |
| !! | TAATATATTCAAAATAACAA+GGG | + | chr4.2:21534670-21534689 | MS.gene035220:intron | 10.0% |
| !!! | ATTAATTGTGTTAATTTTAA+TGG | - | chr4.2:21534503-21534522 | None:intergenic | 10.0% |
| !!! | TCTATAAACAAAAATATTTT+TGG | + | chr4.2:21536995-21537014 | MS.gene035220:intron | 10.0% |
| !! | AAAAATAATAATTGTTGCAT+TGG | - | chr4.2:21534412-21534431 | None:intergenic | 15.0% |
| !! | AATAAAATAAAAGAAGGAAA+AGG | - | chr4.2:21535716-21535735 | None:intergenic | 15.0% |
| !! | AATTAAAATGTAAGCATTTA+TGG | + | chr4.2:21535037-21535056 | MS.gene035220:intron | 15.0% |
| !! | AATTTACTATATTATTGACA+AGG | - | chr4.2:21536136-21536155 | None:intergenic | 15.0% |
| !! | ATGGATCTATATATAATAAA+AGG | + | chr4.2:21535858-21535877 | MS.gene035220:intron | 15.0% |
| !! | CTAATATATTCAAAATAACA+AGG | + | chr4.2:21534669-21534688 | MS.gene035220:intron | 15.0% |
| !! | TATAGTAAATTTAGTATGTT+TGG | + | chr4.2:21536145-21536164 | MS.gene035220:intron | 15.0% |
| !!! | ATTTTGAGAAACAAAAAAAT+GGG | - | chr4.2:21534371-21534390 | None:intergenic | 15.0% |
| !!! | TAAATTCAAACACTAATTTT+AGG | + | chr4.2:21533961-21533980 | MS.gene035220:intron | 15.0% |
| !!! | TAAATTGATGTTTTTTCTTT+TGG | + | chr4.2:21536331-21536350 | MS.gene035220:intron | 15.0% |
| !!! | TATTTTGAGAAACAAAAAAA+TGG | - | chr4.2:21534372-21534391 | None:intergenic | 15.0% |
| !! | AAAAGACAATTATTGTAAGA+CGG | - | chr4.2:21534347-21534366 | None:intergenic | 20.0% |
| !! | AACATGAATAAAATTCGATA+AGG | - | chr4.2:21536729-21536748 | None:intergenic | 20.0% |
| !! | ATAAACTAAAAAATTGACCT+TGG | + | chr4.2:21534837-21534856 | MS.gene035220:intron | 20.0% |
| !! | TAAATAAGAAGCAATTTCAA+AGG | - | chr4.2:21536041-21536060 | None:intergenic | 20.0% |
| !! | TATCTAGTAATATGCAATTA+TGG | - | chr4.2:21536815-21536834 | None:intergenic | 20.0% |
| !! | TATGCATTTATTCAAATGAT+GGG | + | chr4.2:21536293-21536312 | MS.gene035220:intron | 20.0% |
| !! | TATTTGTTCAATTGTTCATT+AGG | - | chr4.2:21535221-21535240 | None:intergenic | 20.0% |
| !! | TGTTTATAGATGAAAAACTA+GGG | - | chr4.2:21536985-21537004 | None:intergenic | 20.0% |
| !! | TTAGAATCAAATGATGAATT+GGG | - | chr4.2:21533944-21533963 | None:intergenic | 20.0% |
| !! | TTATGCATTTATTCAAATGA+TGG | + | chr4.2:21536292-21536311 | MS.gene035220:intron | 20.0% |
| !! | TTGTTTATAGATGAAAAACT+AGG | - | chr4.2:21536986-21537005 | None:intergenic | 20.0% |
| !!! | ATACCTAGTTTAATTTAAGA+AGG | + | chr4.2:21535238-21535257 | MS.gene035220:intron | 20.0% |
| !!! | ATTACAAAATTTTGACAATG+AGG | - | chr4.2:21536666-21536685 | None:intergenic | 20.0% |
| !!! | TCCTTGTTTTATAAGAAAAA+GGG | + | chr4.2:21537112-21537131 | MS.gene035220:intron | 20.0% |
| !!! | TGAATTGAATTTTTAGTGTT+TGG | + | chr4.2:21534288-21534307 | MS.gene035220:intron | 20.0% |
| !!! | TTCCTTGTTTTATAAGAAAA+AGG | + | chr4.2:21537111-21537130 | MS.gene035220:intron | 20.0% |
| !!! | TTTAGAATCAAATGATGAAT+TGG | - | chr4.2:21533945-21533964 | None:intergenic | 20.0% |
| ! | AAATAAATTAGATAGGAGAG+GGG | + | chr4.2:21535829-21535848 | MS.gene035220:intron | 25.0% |
| ! | AACATCAATTTATCTATGCT+TGG | - | chr4.2:21536323-21536342 | None:intergenic | 25.0% |
| ! | AAGAATGTTAACTTCAAAAC+CGG | + | chr4.2:21535330-21535349 | MS.gene035220:intron | 25.0% |
| ! | AAGTGAGTAAAAACAATAGT+TGG | - | chr4.2:21536414-21536433 | None:intergenic | 25.0% |
| ! | AGAAATAAATTAGATAGGAG+AGG | + | chr4.2:21535827-21535846 | MS.gene035220:intron | 25.0% |
| ! | AGAGCTTAAACATGAAATAA+TGG | - | chr4.2:21534194-21534213 | None:intergenic | 25.0% |
| ! | ATGCAATTATGGAAAATCAA+GGG | - | chr4.2:21536804-21536823 | None:intergenic | 25.0% |
| ! | ATGCATTTATTCAAATGATG+GGG | + | chr4.2:21536294-21536313 | MS.gene035220:intron | 25.0% |
| ! | CCACTAACTACAATTAATAA+GGG | + | chr4.2:21534449-21534468 | MS.gene035220:intron | 25.0% |
| ! | CTGGAAGAAATAAATTAGAT+AGG | + | chr4.2:21535822-21535841 | MS.gene035220:intron | 25.0% |
| ! | GAAATAAATTAGATAGGAGA+GGG | + | chr4.2:21535828-21535847 | MS.gene035220:intron | 25.0% |
| ! | GTCAAATGATGTATCTATTT+GGG | + | chr4.2:21536449-21536468 | MS.gene035220:CDS | 25.0% |
| ! | TAAACATGAAATAATGGTGT+TGG | - | chr4.2:21534188-21534207 | None:intergenic | 25.0% |
| ! | TAAATAATAGTAGTCGTTCA+AGG | - | chr4.2:21534551-21534570 | None:intergenic | 25.0% |
| ! | TACTATTATTTAGAGATGGA+GGG | + | chr4.2:21534559-21534578 | MS.gene035220:intron | 25.0% |
| ! | TATGCAATTATGGAAAATCA+AGG | - | chr4.2:21536805-21536824 | None:intergenic | 25.0% |
| ! | TCATATTGTTCTTTGTACTT+GGG | + | chr4.2:21537326-21537345 | MS.gene035220:intron | 25.0% |
| ! | TCCACTAACTACAATTAATA+AGG | + | chr4.2:21534448-21534467 | MS.gene035220:intron | 25.0% |
| ! | TGATAATTACACTTGAAATC+TGG | - | chr4.2:21534136-21534155 | None:intergenic | 25.0% |
| ! | TGCAATTTGTAAAATTTCAC+AGG | + | chr4.2:21533885-21533904 | MS.gene035220:CDS | 25.0% |
| ! | TGTCCTTCTTAAATTAAACT+AGG | - | chr4.2:21535244-21535263 | None:intergenic | 25.0% |
| ! | TTGCAATCATCAAAAGTTAT+TGG | - | chr4.2:21537367-21537386 | None:intergenic | 25.0% |
| !! | AACCTAACTAACTTGTATAT+TGG | + | chr4.2:21535641-21535660 | MS.gene035220:intron | 25.0% |
| !! | AATTCAATTCACTAGCTTAT+CGG | - | chr4.2:21534279-21534298 | None:intergenic | 25.0% |
| !! | ACCTAACTAACTTGTATATT+GGG | + | chr4.2:21535642-21535661 | MS.gene035220:intron | 25.0% |
| !! | ATGCCATAGATTTTTAAACT+TGG | + | chr4.2:21535908-21535927 | MS.gene035220:intron | 25.0% |
| !! | TCCCTTTTTCTTATAAAACA+AGG | - | chr4.2:21537116-21537135 | None:intergenic | 25.0% |
| !! | TTCAAAAAATTGTGCTTTTG+AGG | + | chr4.2:21535432-21535451 | MS.gene035220:intron | 25.0% |
| !! | TTCTTGTACACATTTTCTTT+TGG | + | chr4.2:21536074-21536093 | MS.gene035220:intron | 25.0% |
| !! | TTTTGTATTCTGTTAGAAAG+TGG | + | chr4.2:21535946-21535965 | MS.gene035220:intron | 25.0% |
| !!! | AGGGAGTATTAAAATAACAA+GGG | + | chr4.2:21534578-21534597 | MS.gene035220:intron | 25.0% |
| !!! | GTGTTCTTTTCTATTTTAAG+AGG | + | chr4.2:21537186-21537205 | MS.gene035220:intron | 25.0% |
| !!! | TAAAAACAATAGTTGGTCTT+GGG | - | chr4.2:21536407-21536426 | None:intergenic | 25.0% |
| !!! | TGATTTTGCTGATTATATTC+AGG | + | chr4.2:21536880-21536899 | MS.gene035220:intron | 25.0% |
| !!! | TGCTTGTTTTATTTGAAGAT+AGG | + | chr4.2:21535075-21535094 | MS.gene035220:intron | 25.0% |
| !!! | TGTTTACACTTTTTATTGCT+TGG | + | chr4.2:21536587-21536606 | MS.gene035220:intron | 25.0% |
| !!! | TTGAGGTGATATTTTTTTTC+TGG | + | chr4.2:21535449-21535468 | MS.gene035220:intron | 25.0% |
| !!! | TTGTTCATTAGGTTTTGAAT+AGG | - | chr4.2:21535210-21535229 | None:intergenic | 25.0% |
| AAACTAGAGCAAAATGATGA+AGG | - | chr4.2:21536540-21536559 | None:intergenic | 30.0% | |
| AAATCCTTGATATTCATCAG+TGG | + | chr4.2:21535274-21535293 | MS.gene035220:intron | 30.0% | |
| AAATGTGTACAAGAACATAG+TGG | - | chr4.2:21536069-21536088 | None:intergenic | 30.0% | |
| AAGTTGTCTGTAATTAAGAG+AGG | - | chr4.2:21535121-21535140 | None:intergenic | 30.0% | |
| ACGCCAAGTTTAAAAATCTA+TGG | - | chr4.2:21535914-21535933 | None:intergenic | 30.0% | |
| ACGTTTCTTGGAATTCTTAT+AGG | + | chr4.2:21534913-21534932 | MS.gene035220:intron | 30.0% | |
| ACTATATTATTGACAAGGAC+AGG | - | chr4.2:21536131-21536150 | None:intergenic | 30.0% | |
| ACTGATGAATATCAAGGATT+TGG | - | chr4.2:21535275-21535294 | None:intergenic | 30.0% | |
| AGAATGTTAACTTCAAAACC+GGG | + | chr4.2:21535331-21535350 | MS.gene035220:intron | 30.0% | |
| AGATCTTTCAACTATGATAC+AGG | + | chr4.2:21536229-21536248 | MS.gene035220:CDS | 30.0% | |
| AGGTTTATGCACGATTATTA+AGG | - | chr4.2:21534531-21534550 | None:intergenic | 30.0% | |
| ATATCATAACTTTACCTGCA+TGG | + | chr4.2:21535750-21535769 | MS.gene035220:intron | 30.0% | |
| ATCAGTGGCTTACTATAATA+TGG | + | chr4.2:21535289-21535308 | MS.gene035220:intron | 30.0% | |
| ATGACAAAAATAGACCTGTT+TGG | - | chr4.2:21534811-21534830 | None:intergenic | 30.0% | |
| CAAATTACTTCAACGTTTCT+TGG | + | chr4.2:21534901-21534920 | MS.gene035220:intron | 30.0% | |
| CCAAATGAATACAAGAAACA+TGG | - | chr4.2:21536639-21536658 | None:intergenic | 30.0% | |
| CCATGTTTCTTGTATTCATT+TGG | + | chr4.2:21536636-21536655 | MS.gene035220:intron | 30.0% | |
| CCCTTATTAATTGTAGTTAG+TGG | - | chr4.2:21534452-21534471 | None:intergenic | 30.0% | |
| CGACTACTATTATTTAGAGA+TGG | + | chr4.2:21534555-21534574 | MS.gene035220:intron | 30.0% | |
| CTACTATTATTTAGAGATGG+AGG | + | chr4.2:21534558-21534577 | MS.gene035220:intron | 30.0% | |
| CTCATATTGTTCTTTGTACT+TGG | + | chr4.2:21537325-21537344 | MS.gene035220:intron | 30.0% | |
| GAACAATATGAGTATATGAC+AGG | - | chr4.2:21537317-21537336 | None:intergenic | 30.0% | |
| GAGGAAAGTAAGTAAATTCA+AGG | - | chr4.2:21535102-21535121 | None:intergenic | 30.0% | |
| GGTCAAATGATGTATCTATT+TGG | + | chr4.2:21536448-21536467 | MS.gene035220:CDS | 30.0% | |
| GGTGTATCAATATAATGCAA+AGG | - | chr4.2:21534115-21534134 | None:intergenic | 30.0% | |
| GTTAGTGGAGTAGTTAATAA+TGG | - | chr4.2:21534437-21534456 | None:intergenic | 30.0% | |
| TAACTACTTACATACAACTG+AGG | + | chr4.2:21536840-21536859 | MS.gene035220:intron | 30.0% | |
| TAAGAAGCAATTTCAAAGGT+AGG | - | chr4.2:21536037-21536056 | None:intergenic | 30.0% | |
| TATTAAAATAACAAGGGGGT+CGG | + | chr4.2:21534584-21534603 | MS.gene035220:intron | 30.0% | |
| TCAGTGGCTTACTATAATAT+GGG | + | chr4.2:21535290-21535309 | MS.gene035220:intron | 30.0% | |
| TGCATTTATTCAAATGATGG+GGG | + | chr4.2:21536295-21536314 | MS.gene035220:intron | 30.0% | |
| TGGACACATTAAGAAATCTA+AGG | - | chr4.2:21534872-21534891 | None:intergenic | 30.0% | |
| ! | AAAATTTTGTAATCTTCGCC+TGG | + | chr4.2:21536673-21536692 | MS.gene035220:intron | 30.0% |
| ! | ATCAATTCACTGTATTTTCC+AGG | - | chr4.2:21536694-21536713 | None:intergenic | 30.0% |
| ! | ATCACACTTATTTCTTTGCT+TGG | + | chr4.2:21536356-21536375 | MS.gene035220:intron | 30.0% |
| ! | ATGTTCTTGTCACATTTTGT+TGG | + | chr4.2:21535154-21535173 | MS.gene035220:CDS | 30.0% |
| ! | GGAGTATTAAAATAACAAGG+GGG | + | chr4.2:21534580-21534599 | MS.gene035220:intron | 30.0% |
| ! | GTAAAAACAATAGTTGGTCT+TGG | - | chr4.2:21536408-21536427 | None:intergenic | 30.0% |
| ! | TATACAAGTTAGTTAGGTTG+CGG | - | chr4.2:21535640-21535659 | None:intergenic | 30.0% |
| ! | TCCAACGATAATGGTAATTA+TGG | - | chr4.2:21534087-21534106 | None:intergenic | 30.0% |
| ! | TGAGTATATGACAGGTATTT+TGG | - | chr4.2:21537309-21537328 | None:intergenic | 30.0% |
| ! | TGTTCTTGTCACATTTTGTT+GGG | + | chr4.2:21535155-21535174 | MS.gene035220:CDS | 30.0% |
| !! | ATGACAGGTATTTTGGATTT+TGG | - | chr4.2:21537302-21537321 | None:intergenic | 30.0% |
| !! | GAGGGAGTATTAAAATAACA+AGG | + | chr4.2:21534577-21534596 | MS.gene035220:intron | 30.0% |
| !! | GGGAGTATTAAAATAACAAG+GGG | + | chr4.2:21534579-21534598 | MS.gene035220:intron | 30.0% |
| AAACTACCTTACAAAAGACG+AGG | - | chr4.2:21537051-21537070 | None:intergenic | 35.0% | |
| AATTACAGACAACTTGACAG+AGG | + | chr4.2:21535126-21535145 | MS.gene035220:intron | 35.0% | |
| ACAAACACTCCATGAACAAT+TGG | - | chr4.2:21535676-21535695 | None:intergenic | 35.0% | |
| ATAGTGTAGTGAAGAAGGTT+AGG | - | chr4.2:21533915-21533934 | None:intergenic | 35.0% | |
| ATTAAAATAACAAGGGGGTC+GGG | + | chr4.2:21534585-21534604 | MS.gene035220:intron | 35.0% | |
| CATAAGCATAGATGTGTTAC+TGG | + | chr4.2:21534958-21534977 | MS.gene035220:CDS | 35.0% | |
| CTATGATACAGGCTATTCAA+AGG | + | chr4.2:21536240-21536259 | MS.gene035220:CDS | 35.0% | |
| GAAGAATAGTGTAGTGAAGA+AGG | - | chr4.2:21533920-21533939 | None:intergenic | 35.0% | |
| GACAATTATTGTAAGACGGA+TGG | - | chr4.2:21534343-21534362 | None:intergenic | 35.0% | |
| GCCATAATTACCATTATCGT+TGG | + | chr4.2:21534083-21534102 | MS.gene035220:CDS | 35.0% | |
| GCCCAATATACAAGTTAGTT+AGG | - | chr4.2:21535646-21535665 | None:intergenic | 35.0% | |
| GTATGAGAAGTCATTCTTCA+GGG | - | chr4.2:21537424-21537443 | None:intergenic | 35.0% | |
| TAACAGCTATCAGCTTATCA+TGG | - | chr4.2:21534231-21534250 | None:intergenic | 35.0% | |
| TAAGCCACTGATGAATATCA+AGG | - | chr4.2:21535281-21535300 | None:intergenic | 35.0% | |
| TAGATGACTACTTCCTTTCT+CGG | + | chr4.2:21537466-21537485 | MS.gene035220:intron | 35.0% | |
| TAGTGTAGTGAAGAAGGTTA+GGG | - | chr4.2:21533914-21533933 | None:intergenic | 35.0% | |
| TCCAGTAAAACCAACATGTA+GGG | - | chr4.2:21535495-21535514 | None:intergenic | 35.0% | |
| TCCATGAACAATTGGAGAAA+AGG | - | chr4.2:21535668-21535687 | None:intergenic | 35.0% | |
| TGGCTTACTATAATATGGGT+AGG | + | chr4.2:21535294-21535313 | MS.gene035220:intron | 35.0% | |
| TGTATGAGAAGTCATTCTTC+AGG | - | chr4.2:21537425-21537444 | None:intergenic | 35.0% | |
| ! | CATTGTTTTCCTTAGCTTCA+TGG | + | chr4.2:21537084-21537103 | MS.gene035220:intron | 35.0% |
| ! | GAAGTAATTTGTGAAGCAGA+TGG | - | chr4.2:21534892-21534911 | None:intergenic | 35.0% |
| ! | GTATGCTATGCTATTTGATC+AGG | + | chr4.2:21535596-21535615 | MS.gene035220:intron | 35.0% |
| ! | GTTCTTGTCACATTTTGTTG+GGG | + | chr4.2:21535156-21535175 | MS.gene035220:CDS | 35.0% |
| !! | TCTGCTCTGAAAAAGTTCTA+TGG | + | chr4.2:21536203-21536222 | MS.gene035220:CDS | 35.0% |
| !! | TGTTTTTACTCACTTTCTGC+AGG | + | chr4.2:21536419-21536438 | MS.gene035220:intron | 35.0% |
| !!! | AGTATGTTTGGTTTTGTTCC+AGG | + | chr4.2:21536157-21536176 | MS.gene035220:intron | 35.0% |
| !!! | TTAGGTTTTGAATAGGAACC+AGG | - | chr4.2:21535203-21535222 | None:intergenic | 35.0% |
| !!! | TTTGGTTTTGTTCCAGGTAT+GGG | + | chr4.2:21536163-21536182 | MS.gene035220:intron | 35.0% |
| !!! | TTTTTCTGGTTCCCATTTTC+TGG | + | chr4.2:21535463-21535482 | MS.gene035220:intron | 35.0% |
| AACTTCAAAACCGGGATTGA+TGG | + | chr4.2:21535339-21535358 | MS.gene035220:intron | 40.0% | |
| AAGGACTACTCCAACGATAA+TGG | - | chr4.2:21534096-21534115 | None:intergenic | 40.0% | |
| ACTTCAAAACCGGGATTGAT+GGG | + | chr4.2:21535340-21535359 | MS.gene035220:intron | 40.0% | |
| AGAAAACCTTGTCACCAAAC+AGG | + | chr4.2:21534794-21534813 | MS.gene035220:intron | 40.0% | |
| ATAACCATTCCCATCAATCC+CGG | - | chr4.2:21535352-21535371 | None:intergenic | 40.0% | |
| ATCACGTAAGTGCTACAGAT+CGG | + | chr4.2:21535570-21535589 | MS.gene035220:intron | 40.0% | |
| CAAAATGATGAAGGTGGAAC+AGG | - | chr4.2:21536531-21536550 | None:intergenic | 40.0% | |
| CCAGTAAAACCAACATGTAG+GGG | - | chr4.2:21535494-21535513 | None:intergenic | 40.0% | |
| CTAGAGCAAAATGATGAAGG+TGG | - | chr4.2:21536537-21536556 | None:intergenic | 40.0% | |
| CTCACTTTCTGCAGGATATT+TGG | + | chr4.2:21536427-21536446 | MS.gene035220:intron | 40.0% | |
| CTCCAGTAAAACCAACATGT+AGG | - | chr4.2:21535496-21535515 | None:intergenic | 40.0% | |
| CTGTCAAAACACAAACACAC+AGG | - | chr4.2:21536771-21536790 | None:intergenic | 40.0% | |
| GAAACTCAATAGCAGTTCGT+TGG | + | chr4.2:21535525-21535544 | MS.gene035220:CDS | 40.0% | |
| GGAGACTGTCATGATTCTTA+TGG | + | chr4.2:21534934-21534953 | MS.gene035220:intron | 40.0% | |
| GGTGGAACAGGAAATGTATT+AGG | - | chr4.2:21536519-21536538 | None:intergenic | 40.0% | |
| TAATCATGTTGTCCCATACC+TGG | - | chr4.2:21536178-21536197 | None:intergenic | 40.0% | |
| TAATTATGGCGAATCTCGTC+AGG | - | chr4.2:21534073-21534092 | None:intergenic | 40.0% | |
| TGCGTATAAGAATGCTACAC+CGG | + | chr4.2:21536938-21536957 | MS.gene035220:CDS | 40.0% | |
| TGTACAAGAACATAGTGGCA+AGG | - | chr4.2:21536064-21536083 | None:intergenic | 40.0% | |
| TTACTTCCAGATTCTGCTGA+AGG | + | chr4.2:21534022-21534041 | MS.gene035220:CDS | 40.0% | |
| ! | AATAGACCTGTTTGGTGACA+AGG | - | chr4.2:21534803-21534822 | None:intergenic | 40.0% |
| ! | ATCTTGCTTCAGTTTGCTCT+TGG | + | chr4.2:21534047-21534066 | MS.gene035220:CDS | 40.0% |
| ! | GCCTTTTCTCCAATTGTTCA+TGG | + | chr4.2:21535664-21535683 | MS.gene035220:intron | 40.0% |
| ! | TTCACTAGCTTATCGGCTAT+CGG | - | chr4.2:21534272-21534291 | None:intergenic | 40.0% |
| ! | TTCATCAGGTTTGTTCTTCC+TGG | + | chr4.2:21535182-21535201 | MS.gene035220:intron | 40.0% |
| ! | TTTCCTCCTCGTCTTTTGTA+AGG | + | chr4.2:21537042-21537061 | MS.gene035220:intron | 40.0% |
| ! | TTTTGTTGGGGATGTTCATC+AGG | + | chr4.2:21535168-21535187 | MS.gene035220:CDS | 40.0% |
| !! | TGCTTCTGAGAGTATTAGCT+TGG | + | chr4.2:21536905-21536924 | MS.gene035220:CDS | 40.0% |
| !!! | GTTTGGTTTTGTTCCAGGTA+TGG | + | chr4.2:21536162-21536181 | MS.gene035220:intron | 40.0% |
| !!! | TGCTGCTTTTTAGTTGTGAC+TGG | + | chr4.2:21535803-21535822 | MS.gene035220:intron | 40.0% |
| !!! | TGTTTGTGTTTTGACAGCCA+TGG | + | chr4.2:21536774-21536793 | MS.gene035220:intron | 40.0% |
| AAAACCGGGATTGATGGGAA+TGG | + | chr4.2:21535345-21535364 | MS.gene035220:intron | 45.0% | |
| AGATCACCTTCAGCAGAATC+TGG | - | chr4.2:21534031-21534050 | None:intergenic | 45.0% | |
| AGGAAGCTTCCATGAAGCTA+AGG | - | chr4.2:21537096-21537115 | None:intergenic | 45.0% | |
| ATCCTATAGAGCTTCCATGC+AGG | - | chr4.2:21535767-21535786 | None:intergenic | 45.0% | |
| CAATAGCAGTTCGTTGGTAC+AGG | + | chr4.2:21535531-21535550 | MS.gene035220:CDS | 45.0% | |
| CTACCTTACAAAAGACGAGG+AGG | - | chr4.2:21537048-21537067 | None:intergenic | 45.0% | |
| CTGCTATTGAGTTTCCACCT+AGG | - | chr4.2:21535520-21535539 | None:intergenic | 45.0% | |
| GAACCTTTAGCTACACATCC+TGG | - | chr4.2:21536013-21536032 | None:intergenic | 45.0% | |
| GAGCAAGAATGCAATGCATG+AGG | - | chr4.2:21537221-21537240 | None:intergenic | 45.0% | |
| GATAGGAGAGGGGAAGATTA+TGG | + | chr4.2:21535839-21535858 | MS.gene035220:intron | 45.0% | |
| GCGTATAAGAATGCTACACC+GGG | + | chr4.2:21536939-21536958 | MS.gene035220:CDS | 45.0% | |
| GGAAAATCAAGGGAAGTCCA+TGG | - | chr4.2:21536794-21536813 | None:intergenic | 45.0% | |
| GGTTGCCTATTGTGGAGAAA+AGG | + | chr4.2:21537487-21537506 | MS.gene035220:CDS | 45.0% | |
| TACCTGCATGGAAGCTCTAT+AGG | + | chr4.2:21535762-21535781 | MS.gene035220:intron | 45.0% | |
| TACTTGGGCATCAATGCACA+TGG | + | chr4.2:21537341-21537360 | MS.gene035220:intron | 45.0% | |
| TAGCCAGGATGTGTAGCTAA+AGG | + | chr4.2:21536007-21536026 | MS.gene035220:intron | 45.0% | |
| TGGTCTTCGGAGTGAAAATG+CGG | - | chr4.2:21537551-21537570 | None:intergenic | 45.0% | |
| TGTCATATTCTCACCTAGCC+AGG | + | chr4.2:21535992-21536011 | MS.gene035220:intron | 45.0% | |
| TTTAGCTACACATCCTGGCT+AGG | - | chr4.2:21536008-21536027 | None:intergenic | 45.0% | |
| ! | ATCTAAGGCTCTGTTTGCCA+AGG | - | chr4.2:21534857-21534876 | None:intergenic | 45.0% |
| ! | GCTTGAGCTATTCTGGTCTT+CGG | - | chr4.2:21537564-21537583 | None:intergenic | 45.0% |
| ! | TTACCTTCCAAAGTGCTTCC+CGG | - | chr4.2:21536960-21536979 | None:intergenic | 45.0% |
| !! | GTTGGTCTTGGGTCATATAC+AGG | - | chr4.2:21536396-21536415 | None:intergenic | 45.0% |
| !!! | CCCCTACATGTTGGTTTTAC+TGG | + | chr4.2:21535491-21535510 | MS.gene035220:CDS | 45.0% |
| !!! | GTTGGTTTTACTGGAGACCT+AGG | + | chr4.2:21535500-21535519 | MS.gene035220:CDS | 45.0% |
| AGGGGGTCGGGATAAGAATT+TGG | + | chr4.2:21534597-21534616 | MS.gene035220:intron | 50.0% | |
| AGTTCCACTGCTGCTATCAC+TGG | + | chr4.2:21533822-21533841 | MS.gene035220:CDS | 50.0% | |
| ATCACGCAGCATGTCCAGAT+CGG | + | chr4.2:21536487-21536506 | MS.gene035220:CDS | 50.0% | |
| CCACAATAGGCAACCGAGAA+AGG | - | chr4.2:21537482-21537501 | None:intergenic | 50.0% | |
| CCTTTCTCGGTTGCCTATTG+TGG | + | chr4.2:21537479-21537498 | MS.gene035220:CDS | 50.0% | |
| GCCTATTGTGGAGAAAAGGC+TGG | + | chr4.2:21537491-21537510 | MS.gene035220:CDS | 50.0% | |
| TAGCAGTTCGTTGGTACAGG+AGG | + | chr4.2:21535534-21535553 | MS.gene035220:CDS | 50.0% | |
| TAGGGGCTGCACCAGAAAAT+GGG | - | chr4.2:21535477-21535496 | None:intergenic | 50.0% | |
| TCGGAGTGAAAATGCGGTTG+AGG | - | chr4.2:21537545-21537564 | None:intergenic | 50.0% | |
| TTTCCCCAAGCCAGAACAGT+GGG | - | chr4.2:21533853-21533872 | None:intergenic | 50.0% | |
| ! | GCCAGCCTTTTCTCCACAAT+AGG | - | chr4.2:21537495-21537514 | None:intergenic | 50.0% |
| ! | GGTTTTACTGGAGACCTAGG+TGG | + | chr4.2:21535503-21535522 | MS.gene035220:CDS | 50.0% |
| ! | TTTTCCCCAAGCCAGAACAG+TGG | - | chr4.2:21533854-21533873 | None:intergenic | 50.0% |
| !! | GTTCTGGCTTGGGGAAAAGA+TGG | + | chr4.2:21533856-21533875 | MS.gene035220:CDS | 50.0% |
| AACGCCAGTGATAGCAGCAG+TGG | - | chr4.2:21533829-21533848 | None:intergenic | 55.0% | |
| GTAGGGGCTGCACCAGAAAA+TGG | - | chr4.2:21535478-21535497 | None:intergenic | 55.0% | |
| ! | GAGAAAAGGCTGGCTCAAGG+TGG | + | chr4.2:21537501-21537520 | MS.gene035220:CDS | 55.0% |
| ! | GTATTAGGCACGCACCGATC+TGG | - | chr4.2:21536504-21536523 | None:intergenic | 55.0% |
| ! | GTGGAGAAAAGGCTGGCTCA+AGG | + | chr4.2:21537498-21537517 | MS.gene035220:CDS | 55.0% |
| !! | ACACCGGGAAGCACTTTGGA+AGG | + | chr4.2:21536954-21536973 | MS.gene035220:CDS | 55.0% |
| !! | GTTGCCCACTGTTCTGGCTT+GGG | + | chr4.2:21533846-21533865 | MS.gene035220:CDS | 55.0% |
| !! | TGCTACACCGGGAAGCACTT+TGG | + | chr4.2:21536950-21536969 | MS.gene035220:CDS | 55.0% |
| !! | TTGCCCACTGTTCTGGCTTG+GGG | + | chr4.2:21533847-21533866 | MS.gene035220:CDS | 55.0% |
| ACTGGCGTTGCCCACTGTTC+TGG | + | chr4.2:21533840-21533859 | MS.gene035220:CDS | 60.0% | |
| CTGGTGCAGCCCCTACATGT+TGG | + | chr4.2:21535482-21535501 | MS.gene035220:intron | 60.0% | |
| ! | CGTTGCCCACTGTTCTGGCT+TGG | + | chr4.2:21533845-21533864 | MS.gene035220:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 21533787 | 21537587 | 21533787 | ID=MS.gene035220 |
| chr4.2 | mRNA | 21533787 | 21537587 | 21533787 | ID=MS.gene035220.t1;Parent=MS.gene035220 |
| chr4.2 | exon | 21533787 | 21533906 | 21533787 | ID=MS.gene035220.t1.exon1;Parent=MS.gene035220.t1 |
| chr4.2 | CDS | 21533787 | 21533906 | 21533787 | ID=cds.MS.gene035220.t1;Parent=MS.gene035220.t1 |
| chr4.2 | exon | 21533983 | 21534163 | 21533983 | ID=MS.gene035220.t1.exon2;Parent=MS.gene035220.t1 |
| chr4.2 | CDS | 21533983 | 21534163 | 21533983 | ID=cds.MS.gene035220.t1;Parent=MS.gene035220.t1 |
| chr4.2 | exon | 21534935 | 21535045 | 21534935 | ID=MS.gene035220.t1.exon3;Parent=MS.gene035220.t1 |
| chr4.2 | CDS | 21534935 | 21535045 | 21534935 | ID=cds.MS.gene035220.t1;Parent=MS.gene035220.t1 |
| chr4.2 | exon | 21535134 | 21535189 | 21535134 | ID=MS.gene035220.t1.exon4;Parent=MS.gene035220.t1 |
| chr4.2 | CDS | 21535134 | 21535189 | 21535134 | ID=cds.MS.gene035220.t1;Parent=MS.gene035220.t1 |
| chr4.2 | exon | 21535491 | 21535574 | 21535491 | ID=MS.gene035220.t1.exon5;Parent=MS.gene035220.t1 |
| chr4.2 | CDS | 21535491 | 21535574 | 21535491 | ID=cds.MS.gene035220.t1;Parent=MS.gene035220.t1 |
| chr4.2 | exon | 21536179 | 21536271 | 21536179 | ID=MS.gene035220.t1.exon6;Parent=MS.gene035220.t1 |
| chr4.2 | CDS | 21536179 | 21536271 | 21536179 | ID=cds.MS.gene035220.t1;Parent=MS.gene035220.t1 |
| chr4.2 | exon | 21536441 | 21536508 | 21536441 | ID=MS.gene035220.t1.exon7;Parent=MS.gene035220.t1 |
| chr4.2 | CDS | 21536441 | 21536508 | 21536441 | ID=cds.MS.gene035220.t1;Parent=MS.gene035220.t1 |
| chr4.2 | exon | 21536902 | 21536975 | 21536902 | ID=MS.gene035220.t1.exon8;Parent=MS.gene035220.t1 |
| chr4.2 | CDS | 21536902 | 21536975 | 21536902 | ID=cds.MS.gene035220.t1;Parent=MS.gene035220.t1 |
| chr4.2 | exon | 21537469 | 21537587 | 21537469 | ID=MS.gene035220.t1.exon9;Parent=MS.gene035220.t1 |
| chr4.2 | CDS | 21537469 | 21537587 | 21537469 | ID=cds.MS.gene035220.t1;Parent=MS.gene035220.t1 |
| Gene Sequence |
| Protein sequence |
