AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene01769

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene01769.t1 MTR_2g012440 97.351 302 8 0 1 302 1 302 0.0 622
MS.gene01769.t1 MTR_2g012440 96.624 237 8 0 1 237 1 237 2.92e-176 486
MS.gene01769.t1 MTR_4g090610 52.206 272 122 4 27 291 15 285 1.99e-104 306
MS.gene01769.t1 MTR_4g090610 52.206 272 122 4 27 291 59 329 3.32e-104 308
MS.gene01769.t1 MTR_4g090610 52.206 272 122 4 27 291 104 374 4.64e-104 309
MS.gene01769.t1 MTR_1g110510 45.936 283 141 5 15 291 7 283 3.44e-91 273
MS.gene01769.t1 MTR_5g056140 45.775 284 141 6 16 291 8 286 7.09e-87 262
MS.gene01769.t1 MTR_5g056160 44.912 285 146 5 16 293 8 288 2.21e-84 256
MS.gene01769.t1 MTR_4g090610 53.125 192 84 2 27 212 15 206 3.10e-73 226
MS.gene01769.t1 MTR_4g090610 53.125 192 84 2 27 212 59 250 6.17e-73 226
MS.gene01769.t1 MTR_1g110510 48.165 218 102 4 16 228 8 219 6.17e-71 219
MS.gene01769.t1 MTR_5g056560 50.400 125 60 2 137 260 35 158 1.28e-36 130
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene01769.t1 AT1G11190 71.025 283 76 2 26 302 23 305 5.91e-152 427
MS.gene01769.t1 AT1G68290 50.336 298 134 6 1 292 1 290 6.24e-104 305
MS.gene01769.t1 AT4G21585 50.909 275 127 4 25 292 18 291 2.13e-102 301
MS.gene01769.t1 AT4G21585 50.909 275 127 4 25 292 18 291 2.13e-102 301
MS.gene01769.t1 AT4G21585 46.512 301 127 5 25 292 18 317 1.11e-96 288
MS.gene01769.t1 AT4G21585 46.205 303 127 5 25 292 18 319 4.08e-96 287
MS.gene01769.t1 AT4G21590 49.814 269 132 3 25 291 18 285 4.64e-94 280
MS.gene01769.t1 AT4G21590 49.814 269 132 3 25 291 18 285 4.64e-94 280
MS.gene01769.t1 AT4G21600 47.636 275 135 5 25 291 14 287 3.83e-89 268
MS.gene01769.t1 AT4G21585 44.898 245 101 5 25 236 18 261 4.90e-72 223
MS.gene01769.t1 AT4G21585 44.898 245 101 5 25 236 18 261 4.90e-72 223

Find 57 sgRNAs with CRISPR-Local

Find 156 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTGTTCTTGTCACACTTTA+TGG 0.191189 2.3:-71621959 MS.gene01769:CDS
GTGTATGGCCTGATCAAATT+AGG 0.272622 2.3:-71622403 MS.gene01769:CDS
GTCAGATGATGTTGCTTCTT+GGG 0.326798 2.3:-71621438 MS.gene01769:CDS
GGTCAGATGATGTTGCTTCT+TGG 0.337853 2.3:-71621439 MS.gene01769:CDS
TTTCTTGGATGCAGGGAATC+TGG 0.348070 2.3:-71621460 MS.gene01769:intron
TTGTTCTTGTCACACTTTAT+GGG 0.352767 2.3:-71621958 MS.gene01769:CDS
AAATCTGGAATGACTCTATC+AGG 0.358466 2.3:-71621215 MS.gene01769:intron
ATCATAGTACCTGGTGTCAT+TGG 0.368732 2.3:-71623098 MS.gene01769:CDS
CATGAGGATATGTGTGTTGC+AGG 0.383138 2.3:-71622184 MS.gene01769:CDS
ATGATTCTGAACCAAGTGTT+TGG 0.402598 2.3:-71620644 MS.gene01769:CDS
ACTTATCAGCACTTTGTGTA+TGG 0.406470 2.3:-71622418 MS.gene01769:CDS
GGCACTGGTATAAATATAGA+TGG 0.408551 2.3:-71622382 MS.gene01769:CDS
TACCAGTGCCTAATTTGATC+AGG 0.417409 2.3:+71622395 None:intergenic
GCATACAAATAGCTTGCAAA+TGG 0.430035 2.3:-71621253 MS.gene01769:CDS
GGTTATGAAGGAGTTAAATC+TGG 0.439936 2.3:-71621230 MS.gene01769:CDS
GGCGAGATTGAAAGGTTTGA+TGG 0.451678 2.3:-71623165 MS.gene01769:CDS
CATACAAATAGCTTGCAAAT+GGG 0.452050 2.3:-71621252 MS.gene01769:CDS
CTTCAGAGTCTCCAAACACT+TGG 0.462625 2.3:+71620633 None:intergenic
TTGATGGTGTCTCTTCCACT+TGG 0.484743 2.3:-71623149 MS.gene01769:CDS
AAACACTTGGTTCAGAATCA+TGG 0.494857 2.3:+71620646 None:intergenic
TGAACTGCTTCTGATGCCTC+AGG 0.499507 2.3:+71622470 None:intergenic
CAGAAGAATACTTTGACTCA+AGG 0.500412 2.3:-71620715 MS.gene01769:CDS
CAACTTTCTCATTACAAAGA+GGG 0.507826 2.3:-71622139 MS.gene01769:CDS
TTGTTACCTCCCTATGTCAA+TGG 0.511346 2.3:-71622443 MS.gene01769:CDS
TGCTTCTTGGGAACATTGCA+AGG 0.512844 2.3:-71621426 MS.gene01769:CDS
GTGTTTGGAGACTCTGAAGA+AGG 0.514236 2.3:-71620629 MS.gene01769:CDS
GCTTGCAAATGGGGTTATGA+AGG 0.514371 2.3:-71621242 MS.gene01769:CDS
TTAGATATGGCGAGATTGAA+AGG 0.527224 2.3:-71623173 None:intergenic
GTCATTGGATGGAGCAAAGA+GGG 0.537487 2.3:-71623083 MS.gene01769:CDS
TAGTACCTGGTGTCATTGGA+TGG 0.539152 2.3:-71623094 MS.gene01769:CDS
CAATTGATCTACGCTGGTAT+CGG 0.540639 2.3:-71621800 MS.gene01769:CDS
GCAATTCGCTTCATGACATA+CGG 0.542919 2.3:+71620689 None:intergenic
TGATAAGTTACCATTGACAT+AGG 0.548572 2.3:+71622433 None:intergenic
TCAACTTTCTCATTACAAAG+AGG 0.566465 2.3:-71622140 MS.gene01769:CDS
GGCCTGATCAAATTAGGCAC+TGG 0.569289 2.3:-71622397 MS.gene01769:CDS
TCTACTTTCATCATAGTACC+TGG 0.569857 2.3:-71623107 MS.gene01769:CDS
GAGGTGAATCCAACGTGCAT+CGG 0.577676 2.3:+71621840 None:intergenic
GATAAGTTACCATTGACATA+GGG 0.581479 2.3:+71622434 None:intergenic
GTTGGATTCACCTCAGACAA+AGG 0.581712 2.3:-71621831 MS.gene01769:CDS
TGTGTTTCCACCTTTGTCTG+AGG 0.582088 2.3:+71621821 None:intergenic
GATGACATGTCTAATTGCAC+AGG 0.594566 2.3:-71623054 MS.gene01769:intron
ATACAAATAGCTTGCAAATG+GGG 0.599056 2.3:-71621251 MS.gene01769:CDS
CTGCAACACACATATCCTCA+TGG 0.607440 2.3:+71622185 None:intergenic
CTTTATGGGAGATATTCACC+AGG 0.613075 2.3:-71621944 MS.gene01769:intron
GAAACACAATTGATCTACGC+TGG 0.614736 2.3:-71621806 MS.gene01769:CDS
GTCATGAAGCGAATTGCTCA+AGG 0.617583 2.3:-71620683 MS.gene01769:CDS
TGACAAGAACAATAATGCCT+CGG 0.623745 2.3:+71621969 None:intergenic
AAGTTACCATTGACATAGGG+AGG 0.630506 2.3:+71622437 None:intergenic
GGTGTGTCAATGAAATGAAG+TGG 0.644809 2.3:+71622353 None:intergenic
TTGCTCCATCCAATGACACC+AGG 0.646308 2.3:+71623089 None:intergenic
AAGAACAACACAAATCCAAG+TGG 0.649453 2.3:+71623134 None:intergenic
TGTCATTGGATGGAGCAAAG+AGG 0.656727 2.3:-71623084 MS.gene01769:CDS
GGATTCACCTCAGACAAAGG+TGG 0.681668 2.3:-71621828 MS.gene01769:CDS
ATGAAGCGAATTGCTCAAGG+TGG 0.685248 2.3:-71620680 MS.gene01769:CDS
ATATTTCAGCCGATGCACGT+TGG 0.693369 2.3:-71621849 MS.gene01769:intron
AAACATAGGGGACTGCCATG+AGG 0.699367 2.3:-71622200 MS.gene01769:intron
TATTGCAGATAATATGACCG+AGG 0.722861 2.3:-71621986 MS.gene01769:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATAATATGTTGATTTTATT+TGG + chr2.3:71622299-71622318 None:intergenic 10.0%
!! AATGTTTAGATTTCTTATAT+TGG - chr2.3:71622459-71622478 MS.gene01769:CDS 15.0%
!! CTAAAAAAAACAAAAAATCA+TGG + chr2.3:71622989-71623008 None:intergenic 15.0%
!! TAAGTATAAAAATTTCTGAA+AGG + chr2.3:71621712-71621731 None:intergenic 15.0%
!! TATTATTGGAATCATAATTA+TGG - chr2.3:71621239-71621258 MS.gene01769:CDS 15.0%
!! TCTAAACATTAATTAACATT+AGG + chr2.3:71622449-71622468 None:intergenic 15.0%
!! TTATTTATTTATTTGTCATC+TGG + chr2.3:71622731-71622750 None:intergenic 15.0%
!! TTTATCAAATTAATCTTATC+TGG + chr2.3:71621899-71621918 None:intergenic 15.0%
!!! AAAATCAACATATTATTTCT+TGG - chr2.3:71622302-71622321 MS.gene01769:intron 15.0%
!!! ATTTGTATATGTAGTTATTT+TGG - chr2.3:71621485-71621504 MS.gene01769:intron 15.0%
!!! TTAAATATTGTTACTTACAT+TGG + chr2.3:71622222-71622241 None:intergenic 15.0%
!! AAAAAAACAAAAAATCATGG+AGG + chr2.3:71622986-71623005 None:intergenic 20.0%
!! AAAATGATATTTAGTGTGTT+TGG - chr2.3:71620800-71620819 MS.gene01769:intron 20.0%
!! AAACATTAATTAACATTAGG+AGG + chr2.3:71622446-71622465 None:intergenic 20.0%
!! AAGTCAAACATAACTATTTA+TGG - chr2.3:71621041-71621060 MS.gene01769:intron 20.0%
!! ACATTACTTATGTATATGTT+TGG + chr2.3:71621119-71621138 None:intergenic 20.0%
!! GTCAAGAAAATAATATTAAC+CGG - chr2.3:71621765-71621784 MS.gene01769:intron 20.0%
!! TACTTCATGATATTAATTAC+TGG - chr2.3:71621735-71621754 MS.gene01769:intron 20.0%
!! TATTTCTTAGAATTGTCTTT+CGG + chr2.3:71621086-71621105 None:intergenic 20.0%
!!! TTTCTAAAACATTGCTTTAA+AGG - chr2.3:71622903-71622922 MS.gene01769:intron 20.0%
! AAAATATATTGAACCAACCA+CGG - chr2.3:71622772-71622791 MS.gene01769:intron 25.0%
! AAATCACTATTACTCTTGAA+GGG - chr2.3:71621186-71621205 MS.gene01769:intron 25.0%
! AAATTCAACCACTTATTGAT+AGG - chr2.3:71622605-71622624 MS.gene01769:intron 25.0%
! ATCAAATTAATCTTATCTGG+TGG + chr2.3:71621896-71621915 None:intergenic 25.0%
! CTGGTTATGAATAAGTATAA+GGG - chr2.3:71621156-71621175 MS.gene01769:intron 25.0%
! TAAAAATCTTTAGACAAACC+TGG + chr2.3:71621854-71621873 None:intergenic 25.0%
! TCAATAAGTGGTTGAATTTA+TGG + chr2.3:71622604-71622623 None:intergenic 25.0%
! TGGTTTAATCAATACAACTA+CGG - chr2.3:71622700-71622719 MS.gene01769:intron 25.0%
! TTAGTATTGCGTTTGTAAAA+CGG + chr2.3:71620949-71620968 None:intergenic 25.0%
! TTTGAACTAATCATGTAGTT+GGG - chr2.3:71622492-71622511 MS.gene01769:intron 25.0%
!! AAGAATCTAAAATTCGCTTA+AGG + chr2.3:71622070-71622089 None:intergenic 25.0%
!! TATAGTTTTTCTCAATGTCT+TGG + chr2.3:71622199-71622218 None:intergenic 25.0%
!! TTTTGAACTAATCATGTAGT+TGG - chr2.3:71622491-71622510 MS.gene01769:intron 25.0%
!!! GGGTAATTTTTTTTTGAACA+AGG - chr2.3:71621206-71621225 MS.gene01769:intron 25.0%
!!! TTTTCTTGTTTATGCTCATA+AGG - chr2.3:71622106-71622125 MS.gene01769:intron 25.0%
AAAATATGTTACTAGCAGAC+TGG - chr2.3:71622029-71622048 MS.gene01769:intron 30.0%
AAGCAACAAATTTGTGAAAC+AGG - chr2.3:71622959-71622978 MS.gene01769:intron 30.0%
ATTGTTCTTGTCACACTTTA+TGG - chr2.3:71621818-71621837 MS.gene01769:CDS 30.0%
CAAATCACTATTACTCTTGA+AGG - chr2.3:71621185-71621204 MS.gene01769:intron 30.0%
CAACTTTCTCATTACAAAGA+GGG - chr2.3:71621638-71621657 MS.gene01769:CDS 30.0%
CATCATTCATTCCATGTTAA+AGG - chr2.3:71623015-71623034 MS.gene01769:intron 30.0%
GAGATTGATGAAATTGAAAG+TGG + chr2.3:71622417-71622436 None:intergenic 30.0%
GATAAGTTACCATTGACATA+GGG + chr2.3:71621346-71621365 None:intergenic 30.0%
GCTGGTTATGAATAAGTATA+AGG - chr2.3:71621155-71621174 MS.gene01769:intron 30.0%
GGTTTAATCAATACAACTAC+GGG - chr2.3:71622701-71622720 MS.gene01769:intron 30.0%
GTATCAAATGATTATCATGC+TGG - chr2.3:71621137-71621156 MS.gene01769:intron 30.0%
TCAACTTTCTCATTACAAAG+AGG - chr2.3:71621637-71621656 MS.gene01769:CDS 30.0%
TGATAAGTTACCATTGACAT+AGG + chr2.3:71621347-71621366 None:intergenic 30.0%
TGCAACAAAATCCTTTAACA+TGG + chr2.3:71623029-71623048 None:intergenic 30.0%
TTGTTCTTGTCACACTTTAT+GGG - chr2.3:71621819-71621838 MS.gene01769:CDS 30.0%
! ACATATTATTTCTTGGATGC+AGG - chr2.3:71622309-71622328 MS.gene01769:intron 30.0%
! ATACAAATAGCTTGCAAATG+GGG - chr2.3:71622526-71622545 MS.gene01769:intron 30.0%
! CATACAAATAGCTTGCAAAT+GGG - chr2.3:71622525-71622544 MS.gene01769:intron 30.0%
! CATATTATTTCTTGGATGCA+GGG - chr2.3:71622310-71622329 MS.gene01769:intron 30.0%
! TGAAATCCACATTTTTCATC+TGG + chr2.3:71621448-71621467 None:intergenic 30.0%
! TGTTGCTGTTAACAAACATA+GGG - chr2.3:71621564-71621583 MS.gene01769:intron 30.0%
! TTGTTGCTGTTAACAAACAT+AGG - chr2.3:71621563-71621582 MS.gene01769:intron 30.0%
! TTTTTGAACAAGGTCATGAA+GGG - chr2.3:71621216-71621235 MS.gene01769:CDS 30.0%
!! ACACACGTAGATTTGATTTT+GGG - chr2.3:71620995-71621014 MS.gene01769:intron 30.0%
!! TACACACGTAGATTTGATTT+TGG - chr2.3:71620994-71621013 MS.gene01769:intron 30.0%
!!! AAAGCAACGTTTTAAAAACC+TGG - chr2.3:71622637-71622656 MS.gene01769:intron 30.0%
!!! TGAACACGTGGATTTTTTAT+TGG - chr2.3:71622271-71622290 MS.gene01769:intron 30.0%
!!! TTTTTTGAACAAGGTCATGA+AGG - chr2.3:71621215-71621234 MS.gene01769:intron 30.0%
AAACACTTGGTTCAGAATCA+TGG + chr2.3:71623134-71623153 None:intergenic 35.0%
AAACCAATTGAGTCATGATC+CGG + chr2.3:71622686-71622705 None:intergenic 35.0%
AACATCTGATCGTAGATGTA+AGG - chr2.3:71621661-71621680 MS.gene01769:intron 35.0%
AAGAACAACACAAATCCAAG+TGG + chr2.3:71620646-71620665 None:intergenic 35.0%
AAGAGAAGCCTATCAATAAG+TGG + chr2.3:71622616-71622635 None:intergenic 35.0%
ACATCTGATCGTAGATGTAA+GGG - chr2.3:71621662-71621681 MS.gene01769:intron 35.0%
ACGGAGTTTGATGAAAATCA+AGG + chr2.3:71620930-71620949 None:intergenic 35.0%
ACTGAACTAGCCAATTAAAC+CGG + chr2.3:71622879-71622898 None:intergenic 35.0%
ACTTATCAGCACTTTGTGTA+TGG - chr2.3:71621359-71621378 MS.gene01769:intron 35.0%
ATGATTCTGAACCAAGTGTT+TGG - chr2.3:71623133-71623152 MS.gene01769:CDS 35.0%
CAGAAGAATACTTTGACTCA+AGG - chr2.3:71623062-71623081 MS.gene01769:CDS 35.0%
CATATTATCTGCAATATCGC+CGG + chr2.3:71621787-71621806 None:intergenic 35.0%
CCACGTGTTCATTAAAATCT+AGG + chr2.3:71622262-71622281 None:intergenic 35.0%
GGTTATGAAGGAGTTAAATC+TGG - chr2.3:71622547-71622566 MS.gene01769:intron 35.0%
GTTAGCTAGAAGCTAGTATT+TGG + chr2.3:71620896-71620915 None:intergenic 35.0%
TAGTCAGTTCTATGTTCAAC+CGG - chr2.3:71622857-71622876 MS.gene01769:intron 35.0%
TATTGCAGATAATATGACCG+AGG - chr2.3:71621791-71621810 MS.gene01769:CDS 35.0%
TCTACTTTCATCATAGTACC+TGG - chr2.3:71620670-71620689 MS.gene01769:CDS 35.0%
TGACAAGAACAATAATGCCT+CGG + chr2.3:71621811-71621830 None:intergenic 35.0%
TGTTTATGCTCATAAGGTGT+GGG - chr2.3:71622112-71622131 MS.gene01769:intron 35.0%
TTGTTTATGCTCATAAGGTG+TGG - chr2.3:71622111-71622130 MS.gene01769:intron 35.0%
! AAAGGATTTTGTTGCATGTG+TGG - chr2.3:71623033-71623052 MS.gene01769:intron 35.0%
! AAATCATGGCAAAAAAGCAC+CGG + chr2.3:71620864-71620883 None:intergenic 35.0%
! AAATCTGGAATGACTCTATC+AGG - chr2.3:71622562-71622581 MS.gene01769:intron 35.0%
! AGTTTTTCTCAATGTCTTGG+AGG + chr2.3:71622196-71622215 None:intergenic 35.0%
! CTATGTTCAACCGGTTTAAT+TGG - chr2.3:71622866-71622885 MS.gene01769:intron 35.0%
! GCATACAAATAGCTTGCAAA+TGG - chr2.3:71622524-71622543 MS.gene01769:intron 35.0%
! GTTGCTGTTAACAAACATAG+GGG - chr2.3:71621565-71621584 MS.gene01769:intron 35.0%
!! AAGGTCATGAAGGGTATTAT+TGG - chr2.3:71621225-71621244 MS.gene01769:CDS 35.0%
!! CATAGAACTGACTAGTTTGT+CGG + chr2.3:71622851-71622870 None:intergenic 35.0%
!! CCTAGATTTTAATGAACACG+TGG - chr2.3:71622259-71622278 MS.gene01769:intron 35.0%
!! CGTAGATTTGATTTTGGGAA+TGG - chr2.3:71621000-71621019 MS.gene01769:intron 35.0%
!! GGCACTGGTATAAATATAGA+TGG - chr2.3:71621395-71621414 MS.gene01769:intron 35.0%
!! TTTGTCGGTTAGTTTGATCT+CGG + chr2.3:71622836-71622855 None:intergenic 35.0%
!!! ATAGACACTTTTAAAGCCTG+AGG - chr2.3:71621291-71621310 MS.gene01769:intron 35.0%
AAGTTACCATTGACATAGGG+AGG + chr2.3:71621343-71621362 None:intergenic 40.0%
ACATTGCAGTATGATTGCAC+CGG + chr2.3:71622803-71622822 None:intergenic 40.0%
CAATTGATCTACGCTGGTAT+CGG - chr2.3:71621977-71621996 MS.gene01769:CDS 40.0%
CTTTATGGGAGATATTCACC+AGG - chr2.3:71621833-71621852 MS.gene01769:CDS 40.0%
GAAACACAATTGATCTACGC+TGG - chr2.3:71621971-71621990 MS.gene01769:CDS 40.0%
GACACACCAGATGAAAAATG+TGG - chr2.3:71621439-71621458 MS.gene01769:CDS 40.0%
GATGACATGTCTAATTGCAC+AGG - chr2.3:71620723-71620742 MS.gene01769:intron 40.0%
GCAATTCGCTTCATGACATA+CGG + chr2.3:71623091-71623110 None:intergenic 40.0%
GGTGTGTCAATGAAATGAAG+TGG + chr2.3:71621427-71621446 None:intergenic 40.0%
GTGTATGGCCTGATCAAATT+AGG - chr2.3:71621374-71621393 MS.gene01769:intron 40.0%
TACCAGTGCCTAATTTGATC+AGG + chr2.3:71621385-71621404 None:intergenic 40.0%
TTGTTACCTCCCTATGTCAA+TGG - chr2.3:71621334-71621353 MS.gene01769:intron 40.0%
! AAAAGCACGTATGCACTTTC+CGG - chr2.3:71620842-71620861 MS.gene01769:intron 40.0%
! AAGCTAGTATTTGGAGCTTC+TGG + chr2.3:71620887-71620906 None:intergenic 40.0%
! GTCAGATGATGTTGCTTCTT+GGG - chr2.3:71622339-71622358 MS.gene01769:CDS 40.0%
! GTGCTTTTGTGTGTTGCAAA+CGG + chr2.3:71620830-71620849 None:intergenic 40.0%
! TGCTTTTGTGTGTTGCAAAC+GGG + chr2.3:71620829-71620848 None:intergenic 40.0%
! TTTGGAGCTTCTGGAAATCA+TGG + chr2.3:71620878-71620897 None:intergenic 40.0%
! TTTTCTCAATGTCTTGGAGG+AGG + chr2.3:71622193-71622212 None:intergenic 40.0%
!! ATCATAGTACCTGGTGTCAT+TGG - chr2.3:71620679-71620698 MS.gene01769:CDS 40.0%
AGATCGAACCATGAGACATC+CGG - chr2.3:71622664-71622683 MS.gene01769:intron 45.0%
ATAACCAGACACACTAGTCG+AGG + chr2.3:71620770-71620789 None:intergenic 45.0%
ATATTTCAGCCGATGCACGT+TGG - chr2.3:71621928-71621947 MS.gene01769:intron 45.0%
ATGAAGCGAATTGCTCAAGG+TGG - chr2.3:71623097-71623116 MS.gene01769:CDS 45.0%
CATCCGGATCATGACTCAAT+TGG - chr2.3:71622680-71622699 MS.gene01769:intron 45.0%
CATGAGGATATGTGTGTTGC+AGG - chr2.3:71621593-71621612 MS.gene01769:CDS 45.0%
CTGCAACACACATATCCTCA+TGG + chr2.3:71621595-71621614 None:intergenic 45.0%
CTTCAGAGTCTCCAAACACT+TGG + chr2.3:71623147-71623166 None:intergenic 45.0%
GCTTGCAAATGGGGTTATGA+AGG - chr2.3:71622535-71622554 MS.gene01769:intron 45.0%
GGCGAGATTGAAAGGTTTGA+TGG - chr2.3:71620612-71620631 MS.gene01769:CDS 45.0%
GTCATGAAGCGAATTGCTCA+AGG - chr2.3:71623094-71623113 MS.gene01769:CDS 45.0%
GTCATTGGATGGAGCAAAGA+GGG - chr2.3:71620694-71620713 MS.gene01769:CDS 45.0%
GTTGGATTCACCTCAGACAA+AGG - chr2.3:71621946-71621965 MS.gene01769:CDS 45.0%
TCATGGTTCGATCTTCTACC+AGG + chr2.3:71622658-71622677 None:intergenic 45.0%
TGCTTCTTGGGAACATTGCA+AGG - chr2.3:71622351-71622370 MS.gene01769:CDS 45.0%
TGTCATTGGATGGAGCAAAG+AGG - chr2.3:71620693-71620712 MS.gene01769:CDS 45.0%
TGTGTTTCCACCTTTGTCTG+AGG + chr2.3:71621959-71621978 None:intergenic 45.0%
TTTCTTGGATGCAGGGAATC+TGG - chr2.3:71622317-71622336 MS.gene01769:intron 45.0%
! GGTCAGATGATGTTGCTTCT+TGG - chr2.3:71622338-71622357 MS.gene01769:CDS 45.0%
! GTGTTTGGAGACTCTGAAGA+AGG - chr2.3:71623148-71623167 MS.gene01769:CDS 45.0%
!! TAGTACCTGGTGTCATTGGA+TGG - chr2.3:71620683-71620702 MS.gene01769:CDS 45.0%
!! TTGATGGTGTCTCTTCCACT+TGG - chr2.3:71620628-71620647 MS.gene01769:CDS 45.0%
!! TAAATAAATAAGTATTAAAA+TGG - chr2.3:71622740-71622759 MS.gene01769:intron 5.0%
AAACATAGGGGACTGCCATG+AGG - chr2.3:71621577-71621596 MS.gene01769:CDS 50.0%
GAGGTGAATCCAACGTGCAT+CGG + chr2.3:71621940-71621959 None:intergenic 50.0%
GGATTCACCTCAGACAAAGG+TGG - chr2.3:71621949-71621968 MS.gene01769:CDS 50.0%
GGCCTGATCAAATTAGGCAC+TGG - chr2.3:71621380-71621399 MS.gene01769:intron 50.0%
GTCATGATCCGGATGTCTCA+TGG + chr2.3:71622675-71622694 None:intergenic 50.0%
TGAACCAACCACGGTTGAAC+CGG - chr2.3:71622781-71622800 MS.gene01769:intron 50.0%
TGAACTGCTTCTGATGCCTC+AGG + chr2.3:71621310-71621329 None:intergenic 50.0%
TTGCTCCATCCAATGACACC+AGG + chr2.3:71620691-71620710 None:intergenic 50.0%
ACACTAGTCGAGGAGGGCTA+GGG + chr2.3:71620760-71620779 None:intergenic 55.0%
ACCAGACACACTAGTCGAGG+AGG + chr2.3:71620767-71620786 None:intergenic 55.0%
CCAGACACACTAGTCGAGGA+GGG + chr2.3:71620766-71620785 None:intergenic 55.0%
!! TGATTGCACCGGTTCAACCG+TGG + chr2.3:71622792-71622811 None:intergenic 55.0%
CACACTAGTCGAGGAGGGCT+AGG + chr2.3:71620761-71620780 None:intergenic 60.0%
CCCTCCTCGACTAGTGTGTC+TGG - chr2.3:71620763-71620782 MS.gene01769:intron 60.0%
!! TGCACCGGTTCAACCGTGGT+TGG + chr2.3:71622788-71622807 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr2.3 gene 71620610 71623189 71620610 ID=MS.gene01769
chr2.3 mRNA 71620610 71623189 71620610 ID=MS.gene01769.t1;Parent=MS.gene01769
chr2.3 exon 71623055 71623189 71623055 ID=MS.gene01769.t1.exon1;Parent=MS.gene01769.t1
chr2.3 CDS 71623055 71623189 71623055 ID=cds.MS.gene01769.t1;Parent=MS.gene01769.t1
chr2.3 exon 71622324 71622504 71622324 ID=MS.gene01769.t1.exon2;Parent=MS.gene01769.t1
chr2.3 CDS 71622324 71622504 71622324 ID=cds.MS.gene01769.t1;Parent=MS.gene01769.t1
chr2.3 exon 71622122 71622214 71622122 ID=MS.gene01769.t1.exon3;Parent=MS.gene01769.t1
chr2.3 CDS 71622122 71622214 71622122 ID=cds.MS.gene01769.t1;Parent=MS.gene01769.t1
chr2.3 exon 71621945 71622000 71621945 ID=MS.gene01769.t1.exon4;Parent=MS.gene01769.t1
chr2.3 CDS 71621945 71622000 71621945 ID=cds.MS.gene01769.t1;Parent=MS.gene01769.t1
chr2.3 exon 71621779 71621862 71621779 ID=MS.gene01769.t1.exon5;Parent=MS.gene01769.t1
chr2.3 CDS 71621779 71621862 71621779 ID=cds.MS.gene01769.t1;Parent=MS.gene01769.t1
chr2.3 exon 71621576 71621671 71621576 ID=MS.gene01769.t1.exon6;Parent=MS.gene01769.t1
chr2.3 CDS 71621576 71621671 71621576 ID=cds.MS.gene01769.t1;Parent=MS.gene01769.t1
chr2.3 exon 71621404 71621468 71621404 ID=MS.gene01769.t1.exon7;Parent=MS.gene01769.t1
chr2.3 CDS 71621404 71621468 71621404 ID=cds.MS.gene01769.t1;Parent=MS.gene01769.t1
chr2.3 exon 71621216 71621289 71621216 ID=MS.gene01769.t1.exon8;Parent=MS.gene01769.t1
chr2.3 CDS 71621216 71621289 71621216 ID=cds.MS.gene01769.t1;Parent=MS.gene01769.t1
chr2.3 exon 71620610 71620734 71620610 ID=MS.gene01769.t1.exon9;Parent=MS.gene01769.t1
chr2.3 CDS 71620610 71620734 71620610 ID=cds.MS.gene01769.t1;Parent=MS.gene01769.t1
Gene Sequence

>MS.gene01769

ATGGCGAGATTGAAAGGTTTGATGGTGTCTCTTCCACTTGGATTTGTGTTGTTCTTATGTTCTACTTTCATCATAGTACCTGGTGTCATTGGATGGAGCAAAGAGGGTCATGAGATGACATGTCTAATTGCACAGGTAAAGTTCAAACCCTAGCCCTCCTCGACTAGTGTGTCTGGTTATGTGATAACAAAAAATGATATTTAGTGTGTTTGGTTTCCCGTTTGCAACACACAAAAGCACGTATGCACTTTCCGGTGCTTTTTTGCCATGATTTCCAGAAGCTCCAAATACTAGCTTCTAGCTAACGTGAGTTTTTGCCTTGATTTTCATCAAACTCCGTTTTACAAACGCAATACTAAAAGACGCTTAACATATTTAATTTTTTACACACGTAGATTTGATTTTGGGAATGGAATCAATTCTAAAATCAAAAGTCAAACATAACTATTTATGGTCAAATCACGTTTCGATAACCGAAAGACAATTCTAAGAAATACAAATGTGAACCAAACATATACATAAGTAATGTATCAAATGATTATCATGCTGGTTATGAATAAGTATAAGGGCTAATTCAAATCACTATTACTCTTGAAGGGTAATTTTTTTTTGAACAAGGTCATGAAGGGTATTATTGGAATCATAATTATGGTAAAGTAATTGATAATTTCTATATGATTGATAGACACTTTTAAAGCCTGAGGCATCAGAAGCAGTTCATCACTTGTTACCTCCCTATGTCAATGGTAACTTATCAGCACTTTGTGTATGGCCTGATCAAATTAGGCACTGGTATAAATATAGATGGACAAGTCCACTTCATTTCATTGACACACCAGATGAAAAATGTGGATTTCAATATTCAAGTAAGCACTATTTGTATATGTAGTTATTTTGGCATGTGTTCTTGTTATTAAATCTCAAAAATAATTATTATTAATGCAATCAATAATTTGTTGCTGTTAACAAACATAGGGGACTGCCATGAGGATATGTGTGTTGCAGGAGCTATCAGAAATTTCACTTCTCAACTTTCTCATTACAAAGAGGGAACATCTGATCGTAGATGTAAGGGACTCATGTCTATCATTGTTTTTCTCCTTTCAGAAATTTTTATACTTATTTTACTTCATGATATTAATTACTGGAGATTTTGTCAAGAAAATAATATTAACCGGCGATATTGCAGATAATATGACCGAGGCATTATTGTTCTTGTCACACTTTATGGGAGATATTCACCAGGTTTGTCTAAAGATTTTTAAAATTTCTTTTATTATATACCACCAGATAAGATTAATTTGATAAAATTACTATTATATTTCAGCCGATGCACGTTGGATTCACCTCAGACAAAGGTGGAAACACAATTGATCTACGCTGGTATCGGCACAAATCTAATCTGCATCATGTAAGCAAAAAATATGTTACTAGCAGACTGGTTTACAAAACAACTTCCTTAAGCGAATTTTAGATTCTTCATGTGACATTTTTGTTTTTCTTGTTTATGCTCATAAGGTGTGGGACAGAGAAATTATTCTCACAGCATTAGCAGATTACTATGACAAAGATGTGACACTCCTCCTCCAAGACATTGAGAAAAACTATACCAATGTAAGTAACAATATTTAAATTTTTCTATCACTATTCCTAGATTTTAATGAACACGTGGATTTTTTATTGGTTCCAAATAAAATCAACATATTATTTCTTGGATGCAGGGAATCTGGTCAGATGATGTTGCTTCTTGGGAACATTGCAAGGATATCTCTAGTTGTGTAAATAAGTGAGCACTTTTTCTCTTCCACTTTCAATTTCATCAATCTCTTCTTGCCTCCTAATGTTAATTAATGTTTAGATTTCTTATATTGGATGTGCTTGTTTTGAACTAATCATGTAGTTGGGCTAAAGAGAGCATACAAATAGCTTGCAAATGGGGTTATGAAGGAGTTAAATCTGGAATGACTCTATCAGGTAACTCGAGTCACAAACCATAAATTCAACCACTTATTGATAGGCTTCTCTTTAAAGCAACGTTTTAAAAACCTGGTAGAAGATCGAACCATGAGACATCCGGATCATGACTCAATTGGTTTAATCAATACAACTACGGGTGTACCAGATGACAAATAAATAAATAAGTATTAAAATGGATAAAAATGAAAATATATTGAACCAACCACGGTTGAACCGGTGCAATCATACTGCAATGTAATCATCTAACCGAGATCAAACTAACCGACAAACTAGTCAGTTCTATGTTCAACCGGTTTAATTGGCTAGTTCAGTCTGATTTCTAAAACATTGCTTTAAAGGACACAACTAATAAAATTTTTGTTTTTTTAAGCTAAGCAACAAATTTGTGAAACAGGACCTCCATGATTTTTTGTTTTTTTTAGCATATTCATCATTCATTCCATGTTAAAGGATTTTGTTGCATGTGTGGTTTTTGCAGAAGAATACTTTGACTCAAGGATGCCGTATGTCATGAAGCGAATTGCTCAAGGTGGAATTCGATTAGCCATGATTCTGAACCAAGTGTTTGGAGACTCTGAAGAAGGATTTGTAGCAGCTACTTAA
Protein sequence

>MS.gene01769.t1

MARLKGLMVSLPLGFVLFLCSTFIIVPGVIGWSKEGHEMTCLIAQTLLKPEASEAVHHLLPPYVNGNLSALCVWPDQIRHWYKYRWTSPLHFIDTPDEKCGFQYSRDCHEDMCVAGAIRNFTSQLSHYKEGTSDRRYNMTEALLFLSHFMGDIHQPMHVGFTSDKGGNTIDLRWYRHKSNLHHVWDREIILTALADYYDKDVTLLLQDIEKNYTNGIWSDDVASWEHCKDISSCVNNWAKESIQIACKWGYEGVKSGMTLSEEYFDSRMPYVMKRIAQGGIRLAMILNQVFGDSEEGFVAAT