Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene052539.t1 | XP_013457108.1 | 98 | 300 | 6 | 0 | 2 | 301 | 39 | 338 | 9.80E-173 | 615.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene052539.t1 | F4JJL0 | 67.7 | 285 | 92 | 0 | 15 | 299 | 13 | 297 | 2.0e-121 | 436.8 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene052539.t1 | A0A072UMV8 | 98.0 | 300 | 6 | 0 | 2 | 301 | 39 | 338 | 7.1e-173 | 615.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene052539 | MS.gene32189 | 0.917814 | 3.35E-86 | -1.69E-46 |
MS.gene052539 | MS.gene33739 | 0.866796 | 2.19E-65 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene029418 | MS.gene052539 | PPI |
MS.gene053826 | MS.gene052539 | PPI |
MS.gene63052 | MS.gene052539 | PPI |
MS.gene047520 | MS.gene052539 | PPI |
MS.gene65673 | MS.gene052539 | PPI |
MS.gene065148 | MS.gene052539 | PPI |
MS.gene33739 | MS.gene052539 | PPI |
MS.gene052539 | MS.gene01769 | PPI |
MS.gene01361 | MS.gene052539 | PPI |
MS.gene65672 | MS.gene052539 | PPI |
MS.gene052539 | MS.gene64615 | PPI |
MS.gene052539 | MS.gene002383 | PPI |
MS.gene035220 | MS.gene052539 | PPI |
MS.gene32189 | MS.gene052539 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene052539.t1 | MTR_4g090610 | 98.000 | 300 | 6 | 0 | 2 | 301 | 84 | 383 | 0.0 | 622 |
MS.gene052539.t1 | MTR_4g090610 | 98.000 | 300 | 6 | 0 | 2 | 301 | 39 | 338 | 0.0 | 619 |
MS.gene052539.t1 | MTR_4g090610 | 98.299 | 294 | 5 | 0 | 8 | 301 | 1 | 294 | 0.0 | 608 |
MS.gene052539.t1 | MTR_4g090610 | 97.248 | 218 | 6 | 0 | 2 | 219 | 39 | 256 | 5.28e-160 | 447 |
MS.gene052539.t1 | MTR_4g090610 | 97.642 | 212 | 5 | 0 | 8 | 219 | 1 | 212 | 2.76e-156 | 436 |
MS.gene052539.t1 | MTR_1g110510 | 55.479 | 292 | 121 | 3 | 1 | 292 | 1 | 283 | 2.21e-114 | 332 |
MS.gene052539.t1 | MTR_5g056160 | 56.122 | 294 | 124 | 3 | 9 | 301 | 6 | 295 | 2.89e-113 | 329 |
MS.gene052539.t1 | MTR_5g056140 | 55.903 | 288 | 122 | 3 | 9 | 295 | 6 | 289 | 7.98e-112 | 325 |
MS.gene052539.t1 | MTR_2g012440 | 49.664 | 298 | 137 | 5 | 1 | 292 | 1 | 291 | 3.01e-104 | 306 |
MS.gene052539.t1 | MTR_1g110510 | 51.464 | 239 | 107 | 3 | 1 | 239 | 1 | 230 | 3.45e-85 | 255 |
MS.gene052539.t1 | MTR_2g012440 | 50.000 | 234 | 105 | 4 | 1 | 228 | 1 | 228 | 6.56e-80 | 242 |
MS.gene052539.t1 | MTR_5g056560 | 56.000 | 125 | 55 | 0 | 138 | 262 | 35 | 159 | 3.48e-47 | 157 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene052539.t1 | AT4G21585 | 67.719 | 285 | 92 | 0 | 15 | 299 | 13 | 297 | 6.65e-155 | 435 |
MS.gene052539.t1 | AT4G21585 | 67.719 | 285 | 92 | 0 | 15 | 299 | 13 | 297 | 6.65e-155 | 435 |
MS.gene052539.t1 | AT4G21585 | 62.058 | 311 | 92 | 1 | 15 | 299 | 13 | 323 | 8.57e-149 | 420 |
MS.gene052539.t1 | AT4G21585 | 61.661 | 313 | 92 | 1 | 15 | 299 | 13 | 325 | 1.18e-148 | 420 |
MS.gene052539.t1 | AT4G21600 | 60.140 | 286 | 113 | 1 | 15 | 299 | 9 | 294 | 4.60e-134 | 382 |
MS.gene052539.t1 | AT4G21590 | 60.279 | 287 | 109 | 1 | 15 | 301 | 13 | 294 | 5.10e-130 | 372 |
MS.gene052539.t1 | AT4G21590 | 60.279 | 287 | 109 | 1 | 15 | 301 | 13 | 294 | 5.10e-130 | 372 |
MS.gene052539.t1 | AT1G68290 | 57.241 | 290 | 120 | 3 | 3 | 292 | 4 | 289 | 1.28e-119 | 345 |
MS.gene052539.t1 | AT4G21585 | 57.831 | 249 | 79 | 1 | 15 | 237 | 13 | 261 | 2.42e-110 | 320 |
MS.gene052539.t1 | AT4G21585 | 57.831 | 249 | 79 | 1 | 15 | 237 | 13 | 261 | 2.42e-110 | 320 |
MS.gene052539.t1 | AT1G11190 | 53.025 | 281 | 129 | 3 | 20 | 299 | 22 | 300 | 5.71e-110 | 321 |
Find 53 sgRNAs with CRISPR-Local
Find 230 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GGTCAAATGATGTATCTATT+TGG | 0.146576 | 4.3:+23206276 | MS.gene052539:CDS |
CTCACTTTCTGCAGGATATT+TGG | 0.178656 | 4.3:+23206255 | MS.gene052539:intron |
TCCAACGATAATGGTAATTA+TGG | 0.266386 | 4.3:-23203887 | None:intergenic |
GTTGCCCACTGTTCTGGCTT+GGG | 0.302142 | 4.3:+23203646 | MS.gene052539:CDS |
GTCAAATGATGTATCTATTT+GGG | 0.305236 | 4.3:+23206277 | MS.gene052539:CDS |
ATCTTGCTTCAGTTTGCTCT+TGG | 0.330531 | 4.3:+23203850 | MS.gene052539:CDS |
TAGATGACTACTTCCTTTCT+CGG | 0.331349 | 4.3:+23207294 | MS.gene052539:intron |
GGAGACTGTCATGATTCTTA+TGG | 0.364518 | 4.3:+23204762 | MS.gene052539:intron |
CATAAGCATAGATGTGTTAC+TGG | 0.369077 | 4.3:+23204786 | MS.gene052539:CDS |
AGATCACCTTCAGCAGAATC+TGG | 0.378789 | 4.3:-23203831 | None:intergenic |
ACTGGCGTTGCCCACTGTTC+TGG | 0.379196 | 4.3:+23203640 | MS.gene052539:CDS |
CGTTGCCCACTGTTCTGGCT+TGG | 0.384296 | 4.3:+23203645 | MS.gene052539:CDS |
AAGGACTACTCCAACGATAA+TGG | 0.394603 | 4.3:-23203896 | None:intergenic |
TGATAGTTACACTTGAAATC+TGG | 0.401443 | 4.3:-23203936 | None:intergenic |
GCCATAATTACCATTATCGT+TGG | 0.421805 | 4.3:+23203886 | MS.gene052539:CDS |
TTACCTTCCAAAGTGCTTCC+CGG | 0.426230 | 4.3:-23206785 | None:intergenic |
GCTTGAGCTATTCTGGTCTT+CGG | 0.436083 | 4.3:-23207389 | None:intergenic |
AGATCTTTCAACTATGATAC+AGG | 0.437289 | 4.3:+23206057 | MS.gene052539:CDS |
CCTTTCTCGGTTGCCTATTG+TGG | 0.442854 | 4.3:+23207307 | MS.gene052539:CDS |
CCACAATAGGCAACCGAGAA+AGG | 0.443563 | 4.3:-23207307 | None:intergenic |
TGCAATTTGTAAAATTTCAC+AGG | 0.444507 | 4.3:+23203685 | MS.gene052539:CDS |
GTATTAGGCACGCACCGATC+TGG | 0.449100 | 4.3:-23206329 | None:intergenic |
ACAAAGTTTCTAAAATGGTT+CGG | 0.451645 | 4.3:+23203573 | None:intergenic |
AGTTCCACTGCTGCTATCAC+TGG | 0.478428 | 4.3:+23203622 | MS.gene052539:CDS |
TGCTACACCGGGAAGCACTT+TGG | 0.480035 | 4.3:+23206778 | MS.gene052539:CDS |
TTGCCCACTGTTCTGGCTTG+GGG | 0.483534 | 4.3:+23203647 | MS.gene052539:CDS |
CAATAACAGTTCGTTGGTAC+AGG | 0.485073 | 4.3:+23205359 | MS.gene052539:CDS |
TGCTTCTGAGAGTATTAGCT+TGG | 0.487668 | 4.3:+23206733 | MS.gene052539:CDS |
TAATTATGGCGAATCTCGTC+AGG | 0.488969 | 4.3:-23203873 | None:intergenic |
TCCAGTAAAACCAACATGTA+GGG | 0.497771 | 4.3:-23205320 | None:intergenic |
CTGGTGCAGCCCCTACATGT+TGG | 0.499267 | 4.3:+23205310 | MS.gene052539:intron |
GTTCTGGCTTGGGGAAAAGA+TGG | 0.514348 | 4.3:+23203656 | MS.gene052539:CDS |
GGTTGCCTATTGTGGAGAAA+AGG | 0.523206 | 4.3:+23207315 | MS.gene052539:CDS |
TCGGAGTGAAAATGCGGTTG+AGG | 0.526357 | 4.3:-23207370 | None:intergenic |
GCCTATTGTGGAGAAAAGGC+TGG | 0.553535 | 4.3:+23207319 | MS.gene052539:CDS |
TTACTTCCAGATTCTGCTGA+AGG | 0.557063 | 4.3:+23203825 | MS.gene052539:CDS |
TTTCCCCAAGCCAGAACAGT+GGG | 0.572584 | 4.3:-23203650 | None:intergenic |
GAAACTCAATAACAGTTCGT+TGG | 0.576267 | 4.3:+23205353 | MS.gene052539:CDS |
TGCGTATAAGAATGCTACAC+CGG | 0.595882 | 4.3:+23206766 | MS.gene052539:CDS |
CTCCAGTAAAACCAACATGT+AGG | 0.598758 | 4.3:-23205321 | None:intergenic |
TAACAGTTCGTTGGTACAGG+AGG | 0.598967 | 4.3:+23205362 | MS.gene052539:CDS |
ATCACGCAGCATGTCCAGAT+CGG | 0.600826 | 4.3:+23206315 | MS.gene052539:CDS |
GGTGTATCAATATAATGCAA+AGG | 0.604250 | 4.3:-23203915 | None:intergenic |
ACACCGGGAAGCACTTTGGA+AGG | 0.605297 | 4.3:+23206782 | MS.gene052539:CDS |
CTATGATACAGGCTATTCAA+AGG | 0.608724 | 4.3:+23206068 | MS.gene052539:CDS |
CTGTTATTGAGTTTCCACCT+AGG | 0.618467 | 4.3:-23205345 | None:intergenic |
GTGGAGAAAAGGCTGGCTCA+AGG | 0.620844 | 4.3:+23207326 | MS.gene052539:CDS |
CCAGTAAAACCAACATGTAG+GGG | 0.650544 | 4.3:-23205319 | None:intergenic |
AACGCCAGTGATAGCAGCAG+TGG | 0.653347 | 4.3:-23203626 | None:intergenic |
GCGTATAAGAATGCTACACC+GGG | 0.655576 | 4.3:+23206767 | MS.gene052539:CDS |
TGGTCTTCGGAGTGAAAATG+CGG | 0.658686 | 4.3:-23207376 | None:intergenic |
AATTACAGACAACTTGACAG+AGG | 0.688210 | 4.3:+23204954 | MS.gene052539:intron |
GAGAAAAGGCTGGCTCAAGG+TGG | 0.772047 | 4.3:+23207329 | MS.gene052539:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AATTTACTATATTATTAACA+AGG | - | chr4.3:23205964-23205983 | None:intergenic | 10.0% |
!! | ATCTTTAATAAAATAAAAGA+AGG | - | chr4.3:23205550-23205569 | None:intergenic | 10.0% |
!! | CTAATATATTAAAAATAACA+AGG | + | chr4.3:23204497-23204516 | MS.gene052539:intron | 10.0% |
!! | TAATAAAAATTAAAATCACA+TGG | + | chr4.3:23205220-23205239 | MS.gene052539:intron | 10.0% |
!!! | ATTAATTGTGTTAATTTTAA+TGG | - | chr4.3:23204306-23204325 | None:intergenic | 10.0% |
!!! | TCTATAAACAAAAATATTTT+TGG | + | chr4.3:23206823-23206842 | MS.gene052539:intron | 10.0% |
!! | AAAAATAATAATTGTTGCAT+TGG | - | chr4.3:23204215-23204234 | None:intergenic | 15.0% |
!! | AATAAAATAAAAGAAGGAAA+AGG | - | chr4.3:23205544-23205563 | None:intergenic | 15.0% |
!! | AATTAAAATGTAAGCATTTA+TGG | + | chr4.3:23204865-23204884 | MS.gene052539:intron | 15.0% |
!! | ATGGATCTATATATAATAAA+AGG | + | chr4.3:23205686-23205705 | MS.gene052539:intron | 15.0% |
!! | TATAGTAAATTTAGTATGTT+TGG | + | chr4.3:23205973-23205992 | MS.gene052539:intron | 15.0% |
!!! | TAAATTGATGTTTTTTCTTT+TGG | + | chr4.3:23206159-23206178 | MS.gene052539:intron | 15.0% |
!! | AAAAGACAATTATTGTAAGA+CGG | - | chr4.3:23204150-23204169 | None:intergenic | 20.0% |
!! | TAAATAATAGTAGTCGTTTA+AGG | - | chr4.3:23204354-23204373 | None:intergenic | 20.0% |
!! | TATCTAGTAATATGCAATTA+TGG | - | chr4.3:23206643-23206662 | None:intergenic | 20.0% |
!! | TATGCATTTATTCAAATGAT+GGG | + | chr4.3:23206121-23206140 | MS.gene052539:intron | 20.0% |
!! | TATTTGTTCAATTGTTCATT+AGG | - | chr4.3:23205049-23205068 | None:intergenic | 20.0% |
!! | TGTACTTCTTAAATTAAACT+AGG | - | chr4.3:23205072-23205091 | None:intergenic | 20.0% |
!! | TGTTTATAGATGAAAAACTA+GGG | - | chr4.3:23206813-23206832 | None:intergenic | 20.0% |
!! | TTAGAATCAAATGATGAATT+AGG | - | chr4.3:23203744-23203763 | None:intergenic | 20.0% |
!! | TTATGCATTTATTCAAATGA+TGG | + | chr4.3:23206120-23206139 | MS.gene052539:intron | 20.0% |
!! | TTGTTTATAGATGAAAAACT+AGG | - | chr4.3:23206814-23206833 | None:intergenic | 20.0% |
!!! | ATTACAAAATTTTGACAATG+AGG | - | chr4.3:23206494-23206513 | None:intergenic | 20.0% |
!!! | ATTTTGAGAAACAGAAAAAT+GGG | - | chr4.3:23204174-23204193 | None:intergenic | 20.0% |
!!! | TAAATTCAAACCCTAATTTT+AGG | + | chr4.3:23203764-23203783 | MS.gene052539:intron | 20.0% |
!!! | TATTTTGAGAAACAGAAAAA+TGG | - | chr4.3:23204175-23204194 | None:intergenic | 20.0% |
!!! | TCCTTGTTTTATAAGAAAAA+GGG | + | chr4.3:23206940-23206959 | MS.gene052539:intron | 20.0% |
!!! | TGAATTGAATTTTTAGTGTT+TGG | + | chr4.3:23204091-23204110 | MS.gene052539:intron | 20.0% |
!!! | TTCCTTGTTTTATAAGAAAA+AGG | + | chr4.3:23206939-23206958 | MS.gene052539:intron | 20.0% |
! | AAATAAATTAGATAGGAGAG+GGG | + | chr4.3:23205657-23205676 | MS.gene052539:intron | 25.0% |
! | AACATCAATTTATCTATGCT+TGG | - | chr4.3:23206151-23206170 | None:intergenic | 25.0% |
! | AACATGAATAGAATTCGATA+AGG | - | chr4.3:23206557-23206576 | None:intergenic | 25.0% |
! | AAGAATGTTAACTTCAAAAC+CGG | + | chr4.3:23205158-23205177 | MS.gene052539:intron | 25.0% |
! | AAGTGAGTAAAAACAATAGT+TGG | - | chr4.3:23206242-23206261 | None:intergenic | 25.0% |
! | ACTAAGATACTCCTAAAATT+AGG | - | chr4.3:23203778-23203797 | None:intergenic | 25.0% |
! | ACTATATTATTAACAAGGAC+AGG | - | chr4.3:23205959-23205978 | None:intergenic | 25.0% |
! | AGAAATAAATTAGATAGGAG+AGG | + | chr4.3:23205655-23205674 | MS.gene052539:intron | 25.0% |
! | AGAGCTTAAACATGAAATAA+TGG | - | chr4.3:23203997-23204016 | None:intergenic | 25.0% |
! | ATAAACTCAAAAATTGACCT+TGG | + | chr4.3:23204665-23204684 | MS.gene052539:intron | 25.0% |
! | ATGCAATTATGGAAAATCAA+GGG | - | chr4.3:23206632-23206651 | None:intergenic | 25.0% |
! | ATGCATTTATTCAAATGATG+GGG | + | chr4.3:23206122-23206141 | MS.gene052539:intron | 25.0% |
! | CCACTAACTACAATTAATAA+GGG | + | chr4.3:23204252-23204271 | MS.gene052539:intron | 25.0% |
! | CTAAGATACTCCTAAAATTA+GGG | - | chr4.3:23203777-23203796 | None:intergenic | 25.0% |
! | CTGGAAGAAATAAATTAGAT+AGG | + | chr4.3:23205650-23205669 | MS.gene052539:intron | 25.0% |
! | GAAATAAATTAGATAGGAGA+GGG | + | chr4.3:23205656-23205675 | MS.gene052539:intron | 25.0% |
! | GTCAAATGATGTATCTATTT+GGG | + | chr4.3:23206277-23206296 | MS.gene052539:CDS | 25.0% |
! | TAAACATGAAATAATGGTGT+TGG | - | chr4.3:23203991-23204010 | None:intergenic | 25.0% |
! | TAAATAAGAAGCAATTTCGA+AGG | - | chr4.3:23205869-23205888 | None:intergenic | 25.0% |
! | TATGCAATTATGGAAAATCA+AGG | - | chr4.3:23206633-23206652 | None:intergenic | 25.0% |
! | TCATATTGTTCTTTGTACTT+GGG | + | chr4.3:23207154-23207173 | MS.gene052539:intron | 25.0% |
! | TCCACTAACTACAATTAATA+AGG | + | chr4.3:23204251-23204270 | MS.gene052539:intron | 25.0% |
! | TGCAATTTGTAAAATTTCAC+AGG | + | chr4.3:23203685-23203704 | MS.gene052539:CDS | 25.0% |
! | TTGCAATCATCAAAAGTTAT+TGG | - | chr4.3:23207195-23207214 | None:intergenic | 25.0% |
!! | AACCTAACTAACTTGTATAT+TGG | + | chr4.3:23205469-23205488 | MS.gene052539:intron | 25.0% |
!! | AATTCAATTCACTAGCTTAT+CGG | - | chr4.3:23204082-23204101 | None:intergenic | 25.0% |
!! | ACCTAACTAACTTGTATATT+GGG | + | chr4.3:23205470-23205489 | MS.gene052539:intron | 25.0% |
!! | ATGCCATAGATTTTTAAACT+TGG | + | chr4.3:23205736-23205755 | MS.gene052539:intron | 25.0% |
!! | TCCCTTTTTCTTATAAAACA+AGG | - | chr4.3:23206944-23206963 | None:intergenic | 25.0% |
!! | TTCAAAAAATTGTGCTTTTG+AGG | + | chr4.3:23205260-23205279 | MS.gene052539:intron | 25.0% |
!! | TTCTTGTACACATTTTCTTT+TGG | + | chr4.3:23205902-23205921 | MS.gene052539:intron | 25.0% |
!! | TTTTGTATTCTGTTAGAAAG+TGG | + | chr4.3:23205774-23205793 | MS.gene052539:intron | 25.0% |
!!! | AGGGAGTATTAAAATAACAA+GGG | + | chr4.3:23204381-23204400 | MS.gene052539:intron | 25.0% |
!!! | GTGTTCTTTTCTATTTTAAG+AGG | + | chr4.3:23207014-23207033 | MS.gene052539:intron | 25.0% |
!!! | TAAAAACAATAGTTGGTCTT+GGG | - | chr4.3:23206235-23206254 | None:intergenic | 25.0% |
!!! | TGATTTTGCTGATTATATTC+AGG | + | chr4.3:23206708-23206727 | MS.gene052539:intron | 25.0% |
!!! | TGTTTACACTTTTTATTGCT+TGG | + | chr4.3:23206415-23206434 | MS.gene052539:intron | 25.0% |
!!! | TTGAGGTGATATTTTTTTTC+TGG | + | chr4.3:23205277-23205296 | MS.gene052539:intron | 25.0% |
!!! | TTGTTCATTAGGTTTTGAAT+AGG | - | chr4.3:23205038-23205057 | None:intergenic | 25.0% |
AAACTAGAGCAAAATGATGA+AGG | - | chr4.3:23206368-23206387 | None:intergenic | 30.0% | |
AAATGTGTACAAGAACATAG+TGG | - | chr4.3:23205897-23205916 | None:intergenic | 30.0% | |
AAGCAAAGAAATAAGTGTGA+TGG | - | chr4.3:23206185-23206204 | None:intergenic | 30.0% | |
AAGTTGTCTGTAATTAAGAG+AGG | - | chr4.3:23204949-23204968 | None:intergenic | 30.0% | |
ACGCCAAGTTTAAAAATCTA+TGG | - | chr4.3:23205742-23205761 | None:intergenic | 30.0% | |
ACGTTTCTTGGAATTCTTAT+AGG | + | chr4.3:23204741-23204760 | MS.gene052539:intron | 30.0% | |
ACTGATGAAAATCAAGGATT+TGG | - | chr4.3:23205103-23205122 | None:intergenic | 30.0% | |
AGAATGTTAACTTCAAAACC+GGG | + | chr4.3:23205159-23205178 | MS.gene052539:intron | 30.0% | |
AGATCTTTCAACTATGATAC+AGG | + | chr4.3:23206057-23206076 | MS.gene052539:CDS | 30.0% | |
ATATCATAACTTTACCTGCA+TGG | + | chr4.3:23205578-23205597 | MS.gene052539:intron | 30.0% | |
ATCAAATGATGAATTAGGTG+AGG | - | chr4.3:23203739-23203758 | None:intergenic | 30.0% | |
ATCAGTGGCTTACTATAATA+TGG | + | chr4.3:23205117-23205136 | MS.gene052539:intron | 30.0% | |
ATGACAAAAATAGACCTGTT+TGG | - | chr4.3:23204639-23204658 | None:intergenic | 30.0% | |
CAAATTACTTCAACGTTTCT+TGG | + | chr4.3:23204729-23204748 | MS.gene052539:intron | 30.0% | |
CCAAATGAATACAAGAAACA+TGG | - | chr4.3:23206467-23206486 | None:intergenic | 30.0% | |
CCATGTTTCTTGTATTCATT+TGG | + | chr4.3:23206464-23206483 | MS.gene052539:intron | 30.0% | |
CCCTTATTAATTGTAGTTAG+TGG | - | chr4.3:23204255-23204274 | None:intergenic | 30.0% | |
CGACTACTATTATTTAGAGA+CGG | + | chr4.3:23204358-23204377 | MS.gene052539:intron | 30.0% | |
CTCATATTGTTCTTTGTACT+TGG | + | chr4.3:23207153-23207172 | MS.gene052539:intron | 30.0% | |
GAACAATATGAGTATATGAC+AGG | - | chr4.3:23207145-23207164 | None:intergenic | 30.0% | |
GAGGAAAGTAAGTAAATTCA+AGG | - | chr4.3:23204930-23204949 | None:intergenic | 30.0% | |
GGTCAAATGATGTATCTATT+TGG | + | chr4.3:23206276-23206295 | MS.gene052539:CDS | 30.0% | |
GGTGTATCAATATAATGCAA+AGG | - | chr4.3:23203918-23203937 | None:intergenic | 30.0% | |
GTTAGTGGAGTAGTTAATAA+TGG | - | chr4.3:23204240-23204259 | None:intergenic | 30.0% | |
TAACTACTTACATACAACTG+AGG | + | chr4.3:23206668-23206687 | MS.gene052539:intron | 30.0% | |
TACTATTATTTAGAGACGGA+GGG | + | chr4.3:23204362-23204381 | MS.gene052539:intron | 30.0% | |
TATTAAAATAACAAGGGGGT+TGG | + | chr4.3:23204387-23204406 | MS.gene052539:intron | 30.0% | |
TCAGTGGCTTACTATAATAT+GGG | + | chr4.3:23205118-23205137 | MS.gene052539:intron | 30.0% | |
TGATAGTTACACTTGAAATC+TGG | - | chr4.3:23203939-23203958 | None:intergenic | 30.0% | |
TGCATTTATTCAAATGATGG+GGG | + | chr4.3:23206123-23206142 | MS.gene052539:intron | 30.0% | |
TGCTTGTTTCATTTGAAGAT+AGG | + | chr4.3:23204903-23204922 | MS.gene052539:intron | 30.0% | |
TGGACACATTAAGAAATCTA+AGG | - | chr4.3:23204700-23204719 | None:intergenic | 30.0% | |
! | AAAATTTTGTAATCTTCGCC+TGG | + | chr4.3:23206501-23206520 | MS.gene052539:intron | 30.0% |
! | AAATCCTTGATTTTCATCAG+TGG | + | chr4.3:23205102-23205121 | MS.gene052539:intron | 30.0% |
! | AAGGTTTTCTCAAAAGCTTA+TGG | - | chr4.3:23204612-23204631 | None:intergenic | 30.0% |
! | ATCAATTCACTGTATTTTCC+AGG | - | chr4.3:23206522-23206541 | None:intergenic | 30.0% |
! | ATCACACTTATTTCTTTGCT+TGG | + | chr4.3:23206184-23206203 | MS.gene052539:intron | 30.0% |
! | ATGTTCTTGTCACATTTTGT+TGG | + | chr4.3:23204982-23205001 | MS.gene052539:CDS | 30.0% |
! | GGAGTATTAAAATAACAAGG+GGG | + | chr4.3:23204383-23204402 | MS.gene052539:intron | 30.0% |
! | GTAAAAACAATAGTTGGTCT+TGG | - | chr4.3:23206236-23206255 | None:intergenic | 30.0% |
! | TATACAAGTTAGTTAGGTTG+CGG | - | chr4.3:23205468-23205487 | None:intergenic | 30.0% |
! | TCCAACGATAATGGTAATTA+TGG | - | chr4.3:23203890-23203909 | None:intergenic | 30.0% |
! | TGAGTATATGACAGGTATTT+TGG | - | chr4.3:23207137-23207156 | None:intergenic | 30.0% |
! | TGTTCTTGTCACATTTTGTT+GGG | + | chr4.3:23204983-23205002 | MS.gene052539:CDS | 30.0% |
!! | ATGACAGGTATTTTGGATTT+TGG | - | chr4.3:23207130-23207149 | None:intergenic | 30.0% |
!! | GAGGGAGTATTAAAATAACA+AGG | + | chr4.3:23204380-23204399 | MS.gene052539:intron | 30.0% |
!! | GGGAGTATTAAAATAACAAG+GGG | + | chr4.3:23204382-23204401 | MS.gene052539:intron | 30.0% |
AAACTACCTTACAAAAGACG+AGG | - | chr4.3:23206879-23206898 | None:intergenic | 35.0% | |
AATTACAGACAACTTGACAG+AGG | + | chr4.3:23204954-23204973 | MS.gene052539:intron | 35.0% | |
ACAAACACTCCATGAACAAT+TGG | - | chr4.3:23205504-23205523 | None:intergenic | 35.0% | |
CATAAGCATAGATGTGTTAC+TGG | + | chr4.3:23204786-23204805 | MS.gene052539:CDS | 35.0% | |
CTACTATTATTTAGAGACGG+AGG | + | chr4.3:23204361-23204380 | MS.gene052539:intron | 35.0% | |
CTATGATACAGGCTATTCAA+AGG | + | chr4.3:23206068-23206087 | MS.gene052539:CDS | 35.0% | |
GAAACTCAATAACAGTTCGT+TGG | + | chr4.3:23205353-23205372 | MS.gene052539:CDS | 35.0% | |
GACAATTATTGTAAGACGGA+TGG | - | chr4.3:23204146-23204165 | None:intergenic | 35.0% | |
GCCATAATTACCATTATCGT+TGG | + | chr4.3:23203886-23203905 | MS.gene052539:CDS | 35.0% | |
GCCCAATATACAAGTTAGTT+AGG | - | chr4.3:23205474-23205493 | None:intergenic | 35.0% | |
GTATGAGAAGTCATTCTTCA+GGG | - | chr4.3:23207252-23207271 | None:intergenic | 35.0% | |
TAACAGCTATCAGCTTATCA+TGG | - | chr4.3:23204034-23204053 | None:intergenic | 35.0% | |
TAAGAAGCAATTTCGAAGGT+AGG | - | chr4.3:23205865-23205884 | None:intergenic | 35.0% | |
TAAGCCACTGATGAAAATCA+AGG | - | chr4.3:23205109-23205128 | None:intergenic | 35.0% | |
TAGATGACTACTTCCTTTCT+CGG | + | chr4.3:23207294-23207313 | MS.gene052539:intron | 35.0% | |
TAGTGTAGTGAAGAAGGTTA+GGG | - | chr4.3:23203714-23203733 | None:intergenic | 35.0% | |
TCCAGTAAAACCAACATGTA+GGG | - | chr4.3:23205323-23205342 | None:intergenic | 35.0% | |
TCCATGAACAATTGGAGAAA+AGG | - | chr4.3:23205496-23205515 | None:intergenic | 35.0% | |
TGAGCTAAGGGATAAGAATT+TGG | + | chr4.3:23204425-23204444 | MS.gene052539:intron | 35.0% | |
TGGCTTACTATAATATGGGT+AGG | + | chr4.3:23205122-23205141 | MS.gene052539:intron | 35.0% | |
TGTATGAGAAGTCATTCTTC+AGG | - | chr4.3:23207253-23207272 | None:intergenic | 35.0% | |
! | CATTGTTTTCCTTAGCTTCA+TGG | + | chr4.3:23206912-23206931 | MS.gene052539:intron | 35.0% |
! | GAAGTAATTTGTGAAGCAGA+TGG | - | chr4.3:23204720-23204739 | None:intergenic | 35.0% |
! | GTATGCTATGCTATTTGATC+AGG | + | chr4.3:23205424-23205443 | MS.gene052539:intron | 35.0% |
! | GTTCTTGTCACATTTTGTTG+GGG | + | chr4.3:23204984-23205003 | MS.gene052539:CDS | 35.0% |
!! | TCTGCTCTGAAAAAGTTCTA+TGG | + | chr4.3:23206031-23206050 | MS.gene052539:CDS | 35.0% |
!! | TGTTTTTACTCACTTTCTGC+AGG | + | chr4.3:23206247-23206266 | MS.gene052539:intron | 35.0% |
!!! | AGTATGTTTGGTTTTGTTCC+AGG | + | chr4.3:23205985-23206004 | MS.gene052539:intron | 35.0% |
!!! | TTAGGTTTTGAATAGGAACC+AGG | - | chr4.3:23205031-23205050 | None:intergenic | 35.0% |
!!! | TTTGGTTTTGTTCCAGGTAT+GGG | + | chr4.3:23205991-23206010 | MS.gene052539:intron | 35.0% |
!!! | TTTTTCTGGTTCCCATTTTC+TGG | + | chr4.3:23205291-23205310 | MS.gene052539:intron | 35.0% |
AACTCAACTCGTTTGAGCTA+AGG | + | chr4.3:23204412-23204431 | MS.gene052539:intron | 40.0% | |
AACTTCAAAACCGGGATTGA+TGG | + | chr4.3:23205167-23205186 | MS.gene052539:intron | 40.0% | |
AAGGACTACTCCAACGATAA+TGG | - | chr4.3:23203899-23203918 | None:intergenic | 40.0% | |
ACTCAACTCGTTTGAGCTAA+GGG | + | chr4.3:23204413-23204432 | MS.gene052539:intron | 40.0% | |
ACTTCAAAACCGGGATTGAT+GGG | + | chr4.3:23205168-23205187 | MS.gene052539:intron | 40.0% | |
AGAAAACCTTGTCACCAAAC+AGG | + | chr4.3:23204622-23204641 | MS.gene052539:intron | 40.0% | |
ATAACCATTCCCATCAATCC+CGG | - | chr4.3:23205180-23205199 | None:intergenic | 40.0% | |
CAAAATGATGAAGGTGGAAC+AGG | - | chr4.3:23206359-23206378 | None:intergenic | 40.0% | |
CAATAACAGTTCGTTGGTAC+AGG | + | chr4.3:23205359-23205378 | MS.gene052539:CDS | 40.0% | |
CCAGTAAAACCAACATGTAG+GGG | - | chr4.3:23205322-23205341 | None:intergenic | 40.0% | |
CTAGAGCAAAATGATGAAGG+TGG | - | chr4.3:23206365-23206384 | None:intergenic | 40.0% | |
CTCACTTTCTGCAGGATATT+TGG | + | chr4.3:23206255-23206274 | MS.gene052539:intron | 40.0% | |
CTCCAGTAAAACCAACATGT+AGG | - | chr4.3:23205324-23205343 | None:intergenic | 40.0% | |
CTGTCAAAACACAAACACAC+AGG | - | chr4.3:23206599-23206618 | None:intergenic | 40.0% | |
CTGTTATTGAGTTTCCACCT+AGG | - | chr4.3:23205348-23205367 | None:intergenic | 40.0% | |
GGAGACTGTCATGATTCTTA+TGG | + | chr4.3:23204762-23204781 | MS.gene052539:intron | 40.0% | |
GGTGGAACAGGAAATGTATT+AGG | - | chr4.3:23206347-23206366 | None:intergenic | 40.0% | |
GTAGTGTAGTGAAGAAGGTT+AGG | - | chr4.3:23203715-23203734 | None:intergenic | 40.0% | |
TAATCATGTTGTCCCATACC+TGG | - | chr4.3:23206006-23206025 | None:intergenic | 40.0% | |
TAATTATGGCGAATCTCGTC+AGG | - | chr4.3:23203876-23203895 | None:intergenic | 40.0% | |
TGCGTATAAGAATGCTACAC+CGG | + | chr4.3:23206766-23206785 | MS.gene052539:CDS | 40.0% | |
TGTACAAGAACATAGTGGCA+AGG | - | chr4.3:23205892-23205911 | None:intergenic | 40.0% | |
TTACTTCCAGATTCTGCTGA+AGG | + | chr4.3:23203825-23203844 | MS.gene052539:CDS | 40.0% | |
! | AATAGACCTGTTTGGTGACA+AGG | - | chr4.3:23204631-23204650 | None:intergenic | 40.0% |
! | ATCTTGCTTCAGTTTGCTCT+TGG | + | chr4.3:23203850-23203869 | MS.gene052539:CDS | 40.0% |
! | GCCTTTTCTCCAATTGTTCA+TGG | + | chr4.3:23205492-23205511 | MS.gene052539:intron | 40.0% |
! | TTCACTAGCTTATCGGCTAT+CGG | - | chr4.3:23204075-23204094 | None:intergenic | 40.0% |
! | TTCATCAGGTTTGTTCTTCC+TGG | + | chr4.3:23205010-23205029 | MS.gene052539:intron | 40.0% |
! | TTTCCTCCTCGTCTTTTGTA+AGG | + | chr4.3:23206870-23206889 | MS.gene052539:intron | 40.0% |
! | TTTTGTTGGGGATGTTCATC+AGG | + | chr4.3:23204996-23205015 | MS.gene052539:CDS | 40.0% |
!! | TGCTTCTGAGAGTATTAGCT+TGG | + | chr4.3:23206733-23206752 | MS.gene052539:CDS | 40.0% |
!!! | GTTTGGTTTTGTTCCAGGTA+TGG | + | chr4.3:23205990-23206009 | MS.gene052539:intron | 40.0% |
!!! | TGCTGCTTTTTAGTTGTGAC+TGG | + | chr4.3:23205631-23205650 | MS.gene052539:intron | 40.0% |
!!! | TGTTTGTGTTTTGACAGCCA+TGG | + | chr4.3:23206602-23206621 | MS.gene052539:intron | 40.0% |
AAAACCGGGATTGATGGGAA+TGG | + | chr4.3:23205173-23205192 | MS.gene052539:intron | 45.0% | |
AGATCACCTTCAGCAGAATC+TGG | - | chr4.3:23203834-23203853 | None:intergenic | 45.0% | |
AGGAAGCTTCCATGAAGCTA+AGG | - | chr4.3:23206924-23206943 | None:intergenic | 45.0% | |
ATCCTATAGAGCTTCCATGC+AGG | - | chr4.3:23205595-23205614 | None:intergenic | 45.0% | |
CTACCTTACAAAAGACGAGG+AGG | - | chr4.3:23206876-23206895 | None:intergenic | 45.0% | |
GAACCTTTAGCTACACATCC+TGG | - | chr4.3:23205841-23205860 | None:intergenic | 45.0% | |
GAGCAAGAATGCAATGCATG+AGG | - | chr4.3:23207049-23207068 | None:intergenic | 45.0% | |
GAGGAGTAGTGTAGTGAAGA+AGG | - | chr4.3:23203720-23203739 | None:intergenic | 45.0% | |
GATAGGAGAGGGGAAGATTA+TGG | + | chr4.3:23205667-23205686 | MS.gene052539:intron | 45.0% | |
GCGTATAAGAATGCTACACC+GGG | + | chr4.3:23206767-23206786 | MS.gene052539:CDS | 45.0% | |
GGAAAATCAAGGGAAGTCCA+TGG | - | chr4.3:23206622-23206641 | None:intergenic | 45.0% | |
GGTTGCCTATTGTGGAGAAA+AGG | + | chr4.3:23207315-23207334 | MS.gene052539:CDS | 45.0% | |
TAACAGTTCGTTGGTACAGG+AGG | + | chr4.3:23205362-23205381 | MS.gene052539:CDS | 45.0% | |
TACCTGCATGGAAGCTCTAT+AGG | + | chr4.3:23205590-23205609 | MS.gene052539:intron | 45.0% | |
TACTTGGGCATCAATGCACA+TGG | + | chr4.3:23207169-23207188 | MS.gene052539:intron | 45.0% | |
TAGCCAGGATGTGTAGCTAA+AGG | + | chr4.3:23205835-23205854 | MS.gene052539:intron | 45.0% | |
TGGTCTTCGGAGTGAAAATG+CGG | - | chr4.3:23207379-23207398 | None:intergenic | 45.0% | |
TGTCATATTCTCACCTAGCC+AGG | + | chr4.3:23205820-23205839 | MS.gene052539:intron | 45.0% | |
TTTAGCTACACATCCTGGCT+AGG | - | chr4.3:23205836-23205855 | None:intergenic | 45.0% | |
! | ATCTAAGGCTCTGTTTGCCA+AGG | - | chr4.3:23204685-23204704 | None:intergenic | 45.0% |
! | GCTTGAGCTATTCTGGTCTT+CGG | - | chr4.3:23207392-23207411 | None:intergenic | 45.0% |
! | TTACCTTCCAAAGTGCTTCC+CGG | - | chr4.3:23206788-23206807 | None:intergenic | 45.0% |
!! | GTTGGTCTTGGGTCATATAC+AGG | - | chr4.3:23206224-23206243 | None:intergenic | 45.0% |
!!! | CCCCTACATGTTGGTTTTAC+TGG | + | chr4.3:23205319-23205338 | MS.gene052539:CDS | 45.0% |
!!! | GTTGGTTTTACTGGAGACCT+AGG | + | chr4.3:23205328-23205347 | MS.gene052539:CDS | 45.0% |
!! | TAATATATTAAAAATAACAA+GGG | + | chr4.3:23204498-23204517 | MS.gene052539:intron | 5.0% |
AGTTCCACTGCTGCTATCAC+TGG | + | chr4.3:23203622-23203641 | MS.gene052539:CDS | 50.0% | |
ATCACGCAGCATGTCCAGAT+CGG | + | chr4.3:23206315-23206334 | MS.gene052539:CDS | 50.0% | |
CCACAATAGGCAACCGAGAA+AGG | - | chr4.3:23207310-23207329 | None:intergenic | 50.0% | |
CCTTTCTCGGTTGCCTATTG+TGG | + | chr4.3:23207307-23207326 | MS.gene052539:CDS | 50.0% | |
GCCTATTGTGGAGAAAAGGC+TGG | + | chr4.3:23207319-23207338 | MS.gene052539:CDS | 50.0% | |
TAGGGGCTGCACCAGAAAAT+GGG | - | chr4.3:23205305-23205324 | None:intergenic | 50.0% | |
TCGGAGTGAAAATGCGGTTG+AGG | - | chr4.3:23207373-23207392 | None:intergenic | 50.0% | |
TTTCCCCAAGCCAGAACAGT+GGG | - | chr4.3:23203653-23203672 | None:intergenic | 50.0% | |
! | GCCAGCCTTTTCTCCACAAT+AGG | - | chr4.3:23207323-23207342 | None:intergenic | 50.0% |
! | GGTTTTACTGGAGACCTAGG+TGG | + | chr4.3:23205331-23205350 | MS.gene052539:CDS | 50.0% |
! | TTTTCCCCAAGCCAGAACAG+TGG | - | chr4.3:23203654-23203673 | None:intergenic | 50.0% |
!! | GTTCTGGCTTGGGGAAAAGA+TGG | + | chr4.3:23203656-23203675 | MS.gene052539:CDS | 50.0% |
AACGCCAGTGATAGCAGCAG+TGG | - | chr4.3:23203629-23203648 | None:intergenic | 55.0% | |
GTAGGGGCTGCACCAGAAAA+TGG | - | chr4.3:23205306-23205325 | None:intergenic | 55.0% | |
! | GAGAAAAGGCTGGCTCAAGG+TGG | + | chr4.3:23207329-23207348 | MS.gene052539:CDS | 55.0% |
! | GTATTAGGCACGCACCGATC+TGG | - | chr4.3:23206332-23206351 | None:intergenic | 55.0% |
! | GTGGAGAAAAGGCTGGCTCA+AGG | + | chr4.3:23207326-23207345 | MS.gene052539:CDS | 55.0% |
!! | ACACCGGGAAGCACTTTGGA+AGG | + | chr4.3:23206782-23206801 | MS.gene052539:CDS | 55.0% |
!! | GTTGCCCACTGTTCTGGCTT+GGG | + | chr4.3:23203646-23203665 | MS.gene052539:CDS | 55.0% |
!! | TGCTACACCGGGAAGCACTT+TGG | + | chr4.3:23206778-23206797 | MS.gene052539:CDS | 55.0% |
!! | TTGCCCACTGTTCTGGCTTG+GGG | + | chr4.3:23203647-23203666 | MS.gene052539:CDS | 55.0% |
ACTGGCGTTGCCCACTGTTC+TGG | + | chr4.3:23203640-23203659 | MS.gene052539:CDS | 60.0% | |
CTGGTGCAGCCCCTACATGT+TGG | + | chr4.3:23205310-23205329 | MS.gene052539:intron | 60.0% | |
! | CGTTGCCCACTGTTCTGGCT+TGG | + | chr4.3:23203645-23203664 | MS.gene052539:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.3 | gene | 23203587 | 23207415 | 23203587 | ID=MS.gene052539 |
chr4.3 | mRNA | 23203587 | 23207415 | 23203587 | ID=MS.gene052539.t1;Parent=MS.gene052539 |
chr4.3 | exon | 23203587 | 23203706 | 23203587 | ID=MS.gene052539.t1.exon1;Parent=MS.gene052539.t1 |
chr4.3 | CDS | 23203587 | 23203706 | 23203587 | ID=cds.MS.gene052539.t1;Parent=MS.gene052539.t1 |
chr4.3 | exon | 23203786 | 23203966 | 23203786 | ID=MS.gene052539.t1.exon2;Parent=MS.gene052539.t1 |
chr4.3 | CDS | 23203786 | 23203966 | 23203786 | ID=cds.MS.gene052539.t1;Parent=MS.gene052539.t1 |
chr4.3 | exon | 23204763 | 23204873 | 23204763 | ID=MS.gene052539.t1.exon3;Parent=MS.gene052539.t1 |
chr4.3 | CDS | 23204763 | 23204873 | 23204763 | ID=cds.MS.gene052539.t1;Parent=MS.gene052539.t1 |
chr4.3 | exon | 23204962 | 23205017 | 23204962 | ID=MS.gene052539.t1.exon4;Parent=MS.gene052539.t1 |
chr4.3 | CDS | 23204962 | 23205017 | 23204962 | ID=cds.MS.gene052539.t1;Parent=MS.gene052539.t1 |
chr4.3 | exon | 23205319 | 23205402 | 23205319 | ID=MS.gene052539.t1.exon5;Parent=MS.gene052539.t1 |
chr4.3 | CDS | 23205319 | 23205402 | 23205319 | ID=cds.MS.gene052539.t1;Parent=MS.gene052539.t1 |
chr4.3 | exon | 23206007 | 23206099 | 23206007 | ID=MS.gene052539.t1.exon6;Parent=MS.gene052539.t1 |
chr4.3 | CDS | 23206007 | 23206099 | 23206007 | ID=cds.MS.gene052539.t1;Parent=MS.gene052539.t1 |
chr4.3 | exon | 23206269 | 23206336 | 23206269 | ID=MS.gene052539.t1.exon7;Parent=MS.gene052539.t1 |
chr4.3 | CDS | 23206269 | 23206336 | 23206269 | ID=cds.MS.gene052539.t1;Parent=MS.gene052539.t1 |
chr4.3 | exon | 23206730 | 23206803 | 23206730 | ID=MS.gene052539.t1.exon8;Parent=MS.gene052539.t1 |
chr4.3 | CDS | 23206730 | 23206803 | 23206730 | ID=cds.MS.gene052539.t1;Parent=MS.gene052539.t1 |
chr4.3 | exon | 23207297 | 23207415 | 23207297 | ID=MS.gene052539.t1.exon9;Parent=MS.gene052539.t1 |
chr4.3 | CDS | 23207297 | 23207415 | 23207297 | ID=cds.MS.gene052539.t1;Parent=MS.gene052539.t1 |
Gene Sequence |
Protein sequence |