AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene052539


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene052539.t1 MTR_4g090610 98.000 300 6 0 2 301 84 383 0.0 622
MS.gene052539.t1 MTR_4g090610 98.000 300 6 0 2 301 39 338 0.0 619
MS.gene052539.t1 MTR_4g090610 98.299 294 5 0 8 301 1 294 0.0 608
MS.gene052539.t1 MTR_4g090610 97.248 218 6 0 2 219 39 256 5.28e-160 447
MS.gene052539.t1 MTR_4g090610 97.642 212 5 0 8 219 1 212 2.76e-156 436
MS.gene052539.t1 MTR_1g110510 55.479 292 121 3 1 292 1 283 2.21e-114 332
MS.gene052539.t1 MTR_5g056160 56.122 294 124 3 9 301 6 295 2.89e-113 329
MS.gene052539.t1 MTR_5g056140 55.903 288 122 3 9 295 6 289 7.98e-112 325
MS.gene052539.t1 MTR_2g012440 49.664 298 137 5 1 292 1 291 3.01e-104 306
MS.gene052539.t1 MTR_1g110510 51.464 239 107 3 1 239 1 230 3.45e-85 255
MS.gene052539.t1 MTR_2g012440 50.000 234 105 4 1 228 1 228 6.56e-80 242
MS.gene052539.t1 MTR_5g056560 56.000 125 55 0 138 262 35 159 3.48e-47 157
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene052539.t1 AT4G21585 67.719 285 92 0 15 299 13 297 6.65e-155 435
MS.gene052539.t1 AT4G21585 67.719 285 92 0 15 299 13 297 6.65e-155 435
MS.gene052539.t1 AT4G21585 62.058 311 92 1 15 299 13 323 8.57e-149 420
MS.gene052539.t1 AT4G21585 61.661 313 92 1 15 299 13 325 1.18e-148 420
MS.gene052539.t1 AT4G21600 60.140 286 113 1 15 299 9 294 4.60e-134 382
MS.gene052539.t1 AT4G21590 60.279 287 109 1 15 301 13 294 5.10e-130 372
MS.gene052539.t1 AT4G21590 60.279 287 109 1 15 301 13 294 5.10e-130 372
MS.gene052539.t1 AT1G68290 57.241 290 120 3 3 292 4 289 1.28e-119 345
MS.gene052539.t1 AT4G21585 57.831 249 79 1 15 237 13 261 2.42e-110 320
MS.gene052539.t1 AT4G21585 57.831 249 79 1 15 237 13 261 2.42e-110 320
MS.gene052539.t1 AT1G11190 53.025 281 129 3 20 299 22 300 5.71e-110 321

Find 53 sgRNAs with CRISPR-Local

Find 230 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTCAAATGATGTATCTATT+TGG 0.146576 4.3:+23206276 MS.gene052539:CDS
CTCACTTTCTGCAGGATATT+TGG 0.178656 4.3:+23206255 MS.gene052539:intron
TCCAACGATAATGGTAATTA+TGG 0.266386 4.3:-23203887 None:intergenic
GTTGCCCACTGTTCTGGCTT+GGG 0.302142 4.3:+23203646 MS.gene052539:CDS
GTCAAATGATGTATCTATTT+GGG 0.305236 4.3:+23206277 MS.gene052539:CDS
ATCTTGCTTCAGTTTGCTCT+TGG 0.330531 4.3:+23203850 MS.gene052539:CDS
TAGATGACTACTTCCTTTCT+CGG 0.331349 4.3:+23207294 MS.gene052539:intron
GGAGACTGTCATGATTCTTA+TGG 0.364518 4.3:+23204762 MS.gene052539:intron
CATAAGCATAGATGTGTTAC+TGG 0.369077 4.3:+23204786 MS.gene052539:CDS
AGATCACCTTCAGCAGAATC+TGG 0.378789 4.3:-23203831 None:intergenic
ACTGGCGTTGCCCACTGTTC+TGG 0.379196 4.3:+23203640 MS.gene052539:CDS
CGTTGCCCACTGTTCTGGCT+TGG 0.384296 4.3:+23203645 MS.gene052539:CDS
AAGGACTACTCCAACGATAA+TGG 0.394603 4.3:-23203896 None:intergenic
TGATAGTTACACTTGAAATC+TGG 0.401443 4.3:-23203936 None:intergenic
GCCATAATTACCATTATCGT+TGG 0.421805 4.3:+23203886 MS.gene052539:CDS
TTACCTTCCAAAGTGCTTCC+CGG 0.426230 4.3:-23206785 None:intergenic
GCTTGAGCTATTCTGGTCTT+CGG 0.436083 4.3:-23207389 None:intergenic
AGATCTTTCAACTATGATAC+AGG 0.437289 4.3:+23206057 MS.gene052539:CDS
CCTTTCTCGGTTGCCTATTG+TGG 0.442854 4.3:+23207307 MS.gene052539:CDS
CCACAATAGGCAACCGAGAA+AGG 0.443563 4.3:-23207307 None:intergenic
TGCAATTTGTAAAATTTCAC+AGG 0.444507 4.3:+23203685 MS.gene052539:CDS
GTATTAGGCACGCACCGATC+TGG 0.449100 4.3:-23206329 None:intergenic
ACAAAGTTTCTAAAATGGTT+CGG 0.451645 4.3:+23203573 None:intergenic
AGTTCCACTGCTGCTATCAC+TGG 0.478428 4.3:+23203622 MS.gene052539:CDS
TGCTACACCGGGAAGCACTT+TGG 0.480035 4.3:+23206778 MS.gene052539:CDS
TTGCCCACTGTTCTGGCTTG+GGG 0.483534 4.3:+23203647 MS.gene052539:CDS
CAATAACAGTTCGTTGGTAC+AGG 0.485073 4.3:+23205359 MS.gene052539:CDS
TGCTTCTGAGAGTATTAGCT+TGG 0.487668 4.3:+23206733 MS.gene052539:CDS
TAATTATGGCGAATCTCGTC+AGG 0.488969 4.3:-23203873 None:intergenic
TCCAGTAAAACCAACATGTA+GGG 0.497771 4.3:-23205320 None:intergenic
CTGGTGCAGCCCCTACATGT+TGG 0.499267 4.3:+23205310 MS.gene052539:intron
GTTCTGGCTTGGGGAAAAGA+TGG 0.514348 4.3:+23203656 MS.gene052539:CDS
GGTTGCCTATTGTGGAGAAA+AGG 0.523206 4.3:+23207315 MS.gene052539:CDS
TCGGAGTGAAAATGCGGTTG+AGG 0.526357 4.3:-23207370 None:intergenic
GCCTATTGTGGAGAAAAGGC+TGG 0.553535 4.3:+23207319 MS.gene052539:CDS
TTACTTCCAGATTCTGCTGA+AGG 0.557063 4.3:+23203825 MS.gene052539:CDS
TTTCCCCAAGCCAGAACAGT+GGG 0.572584 4.3:-23203650 None:intergenic
GAAACTCAATAACAGTTCGT+TGG 0.576267 4.3:+23205353 MS.gene052539:CDS
TGCGTATAAGAATGCTACAC+CGG 0.595882 4.3:+23206766 MS.gene052539:CDS
CTCCAGTAAAACCAACATGT+AGG 0.598758 4.3:-23205321 None:intergenic
TAACAGTTCGTTGGTACAGG+AGG 0.598967 4.3:+23205362 MS.gene052539:CDS
ATCACGCAGCATGTCCAGAT+CGG 0.600826 4.3:+23206315 MS.gene052539:CDS
GGTGTATCAATATAATGCAA+AGG 0.604250 4.3:-23203915 None:intergenic
ACACCGGGAAGCACTTTGGA+AGG 0.605297 4.3:+23206782 MS.gene052539:CDS
CTATGATACAGGCTATTCAA+AGG 0.608724 4.3:+23206068 MS.gene052539:CDS
CTGTTATTGAGTTTCCACCT+AGG 0.618467 4.3:-23205345 None:intergenic
GTGGAGAAAAGGCTGGCTCA+AGG 0.620844 4.3:+23207326 MS.gene052539:CDS
CCAGTAAAACCAACATGTAG+GGG 0.650544 4.3:-23205319 None:intergenic
AACGCCAGTGATAGCAGCAG+TGG 0.653347 4.3:-23203626 None:intergenic
GCGTATAAGAATGCTACACC+GGG 0.655576 4.3:+23206767 MS.gene052539:CDS
TGGTCTTCGGAGTGAAAATG+CGG 0.658686 4.3:-23207376 None:intergenic
AATTACAGACAACTTGACAG+AGG 0.688210 4.3:+23204954 MS.gene052539:intron
GAGAAAAGGCTGGCTCAAGG+TGG 0.772047 4.3:+23207329 MS.gene052539:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTTACTATATTATTAACA+AGG - chr4.3:23205964-23205983 None:intergenic 10.0%
!! ATCTTTAATAAAATAAAAGA+AGG - chr4.3:23205550-23205569 None:intergenic 10.0%
!! CTAATATATTAAAAATAACA+AGG + chr4.3:23204497-23204516 MS.gene052539:intron 10.0%
!! TAATAAAAATTAAAATCACA+TGG + chr4.3:23205220-23205239 MS.gene052539:intron 10.0%
!!! ATTAATTGTGTTAATTTTAA+TGG - chr4.3:23204306-23204325 None:intergenic 10.0%
!!! TCTATAAACAAAAATATTTT+TGG + chr4.3:23206823-23206842 MS.gene052539:intron 10.0%
!! AAAAATAATAATTGTTGCAT+TGG - chr4.3:23204215-23204234 None:intergenic 15.0%
!! AATAAAATAAAAGAAGGAAA+AGG - chr4.3:23205544-23205563 None:intergenic 15.0%
!! AATTAAAATGTAAGCATTTA+TGG + chr4.3:23204865-23204884 MS.gene052539:intron 15.0%
!! ATGGATCTATATATAATAAA+AGG + chr4.3:23205686-23205705 MS.gene052539:intron 15.0%
!! TATAGTAAATTTAGTATGTT+TGG + chr4.3:23205973-23205992 MS.gene052539:intron 15.0%
!!! TAAATTGATGTTTTTTCTTT+TGG + chr4.3:23206159-23206178 MS.gene052539:intron 15.0%
!! AAAAGACAATTATTGTAAGA+CGG - chr4.3:23204150-23204169 None:intergenic 20.0%
!! TAAATAATAGTAGTCGTTTA+AGG - chr4.3:23204354-23204373 None:intergenic 20.0%
!! TATCTAGTAATATGCAATTA+TGG - chr4.3:23206643-23206662 None:intergenic 20.0%
!! TATGCATTTATTCAAATGAT+GGG + chr4.3:23206121-23206140 MS.gene052539:intron 20.0%
!! TATTTGTTCAATTGTTCATT+AGG - chr4.3:23205049-23205068 None:intergenic 20.0%
!! TGTACTTCTTAAATTAAACT+AGG - chr4.3:23205072-23205091 None:intergenic 20.0%
!! TGTTTATAGATGAAAAACTA+GGG - chr4.3:23206813-23206832 None:intergenic 20.0%
!! TTAGAATCAAATGATGAATT+AGG - chr4.3:23203744-23203763 None:intergenic 20.0%
!! TTATGCATTTATTCAAATGA+TGG + chr4.3:23206120-23206139 MS.gene052539:intron 20.0%
!! TTGTTTATAGATGAAAAACT+AGG - chr4.3:23206814-23206833 None:intergenic 20.0%
!!! ATTACAAAATTTTGACAATG+AGG - chr4.3:23206494-23206513 None:intergenic 20.0%
!!! ATTTTGAGAAACAGAAAAAT+GGG - chr4.3:23204174-23204193 None:intergenic 20.0%
!!! TAAATTCAAACCCTAATTTT+AGG + chr4.3:23203764-23203783 MS.gene052539:intron 20.0%
!!! TATTTTGAGAAACAGAAAAA+TGG - chr4.3:23204175-23204194 None:intergenic 20.0%
!!! TCCTTGTTTTATAAGAAAAA+GGG + chr4.3:23206940-23206959 MS.gene052539:intron 20.0%
!!! TGAATTGAATTTTTAGTGTT+TGG + chr4.3:23204091-23204110 MS.gene052539:intron 20.0%
!!! TTCCTTGTTTTATAAGAAAA+AGG + chr4.3:23206939-23206958 MS.gene052539:intron 20.0%
! AAATAAATTAGATAGGAGAG+GGG + chr4.3:23205657-23205676 MS.gene052539:intron 25.0%
! AACATCAATTTATCTATGCT+TGG - chr4.3:23206151-23206170 None:intergenic 25.0%
! AACATGAATAGAATTCGATA+AGG - chr4.3:23206557-23206576 None:intergenic 25.0%
! AAGAATGTTAACTTCAAAAC+CGG + chr4.3:23205158-23205177 MS.gene052539:intron 25.0%
! AAGTGAGTAAAAACAATAGT+TGG - chr4.3:23206242-23206261 None:intergenic 25.0%
! ACTAAGATACTCCTAAAATT+AGG - chr4.3:23203778-23203797 None:intergenic 25.0%
! ACTATATTATTAACAAGGAC+AGG - chr4.3:23205959-23205978 None:intergenic 25.0%
! AGAAATAAATTAGATAGGAG+AGG + chr4.3:23205655-23205674 MS.gene052539:intron 25.0%
! AGAGCTTAAACATGAAATAA+TGG - chr4.3:23203997-23204016 None:intergenic 25.0%
! ATAAACTCAAAAATTGACCT+TGG + chr4.3:23204665-23204684 MS.gene052539:intron 25.0%
! ATGCAATTATGGAAAATCAA+GGG - chr4.3:23206632-23206651 None:intergenic 25.0%
! ATGCATTTATTCAAATGATG+GGG + chr4.3:23206122-23206141 MS.gene052539:intron 25.0%
! CCACTAACTACAATTAATAA+GGG + chr4.3:23204252-23204271 MS.gene052539:intron 25.0%
! CTAAGATACTCCTAAAATTA+GGG - chr4.3:23203777-23203796 None:intergenic 25.0%
! CTGGAAGAAATAAATTAGAT+AGG + chr4.3:23205650-23205669 MS.gene052539:intron 25.0%
! GAAATAAATTAGATAGGAGA+GGG + chr4.3:23205656-23205675 MS.gene052539:intron 25.0%
! GTCAAATGATGTATCTATTT+GGG + chr4.3:23206277-23206296 MS.gene052539:CDS 25.0%
! TAAACATGAAATAATGGTGT+TGG - chr4.3:23203991-23204010 None:intergenic 25.0%
! TAAATAAGAAGCAATTTCGA+AGG - chr4.3:23205869-23205888 None:intergenic 25.0%
! TATGCAATTATGGAAAATCA+AGG - chr4.3:23206633-23206652 None:intergenic 25.0%
! TCATATTGTTCTTTGTACTT+GGG + chr4.3:23207154-23207173 MS.gene052539:intron 25.0%
! TCCACTAACTACAATTAATA+AGG + chr4.3:23204251-23204270 MS.gene052539:intron 25.0%
! TGCAATTTGTAAAATTTCAC+AGG + chr4.3:23203685-23203704 MS.gene052539:CDS 25.0%
! TTGCAATCATCAAAAGTTAT+TGG - chr4.3:23207195-23207214 None:intergenic 25.0%
!! AACCTAACTAACTTGTATAT+TGG + chr4.3:23205469-23205488 MS.gene052539:intron 25.0%
!! AATTCAATTCACTAGCTTAT+CGG - chr4.3:23204082-23204101 None:intergenic 25.0%
!! ACCTAACTAACTTGTATATT+GGG + chr4.3:23205470-23205489 MS.gene052539:intron 25.0%
!! ATGCCATAGATTTTTAAACT+TGG + chr4.3:23205736-23205755 MS.gene052539:intron 25.0%
!! TCCCTTTTTCTTATAAAACA+AGG - chr4.3:23206944-23206963 None:intergenic 25.0%
!! TTCAAAAAATTGTGCTTTTG+AGG + chr4.3:23205260-23205279 MS.gene052539:intron 25.0%
!! TTCTTGTACACATTTTCTTT+TGG + chr4.3:23205902-23205921 MS.gene052539:intron 25.0%
!! TTTTGTATTCTGTTAGAAAG+TGG + chr4.3:23205774-23205793 MS.gene052539:intron 25.0%
!!! AGGGAGTATTAAAATAACAA+GGG + chr4.3:23204381-23204400 MS.gene052539:intron 25.0%
!!! GTGTTCTTTTCTATTTTAAG+AGG + chr4.3:23207014-23207033 MS.gene052539:intron 25.0%
!!! TAAAAACAATAGTTGGTCTT+GGG - chr4.3:23206235-23206254 None:intergenic 25.0%
!!! TGATTTTGCTGATTATATTC+AGG + chr4.3:23206708-23206727 MS.gene052539:intron 25.0%
!!! TGTTTACACTTTTTATTGCT+TGG + chr4.3:23206415-23206434 MS.gene052539:intron 25.0%
!!! TTGAGGTGATATTTTTTTTC+TGG + chr4.3:23205277-23205296 MS.gene052539:intron 25.0%
!!! TTGTTCATTAGGTTTTGAAT+AGG - chr4.3:23205038-23205057 None:intergenic 25.0%
AAACTAGAGCAAAATGATGA+AGG - chr4.3:23206368-23206387 None:intergenic 30.0%
AAATGTGTACAAGAACATAG+TGG - chr4.3:23205897-23205916 None:intergenic 30.0%
AAGCAAAGAAATAAGTGTGA+TGG - chr4.3:23206185-23206204 None:intergenic 30.0%
AAGTTGTCTGTAATTAAGAG+AGG - chr4.3:23204949-23204968 None:intergenic 30.0%
ACGCCAAGTTTAAAAATCTA+TGG - chr4.3:23205742-23205761 None:intergenic 30.0%
ACGTTTCTTGGAATTCTTAT+AGG + chr4.3:23204741-23204760 MS.gene052539:intron 30.0%
ACTGATGAAAATCAAGGATT+TGG - chr4.3:23205103-23205122 None:intergenic 30.0%
AGAATGTTAACTTCAAAACC+GGG + chr4.3:23205159-23205178 MS.gene052539:intron 30.0%
AGATCTTTCAACTATGATAC+AGG + chr4.3:23206057-23206076 MS.gene052539:CDS 30.0%
ATATCATAACTTTACCTGCA+TGG + chr4.3:23205578-23205597 MS.gene052539:intron 30.0%
ATCAAATGATGAATTAGGTG+AGG - chr4.3:23203739-23203758 None:intergenic 30.0%
ATCAGTGGCTTACTATAATA+TGG + chr4.3:23205117-23205136 MS.gene052539:intron 30.0%
ATGACAAAAATAGACCTGTT+TGG - chr4.3:23204639-23204658 None:intergenic 30.0%
CAAATTACTTCAACGTTTCT+TGG + chr4.3:23204729-23204748 MS.gene052539:intron 30.0%
CCAAATGAATACAAGAAACA+TGG - chr4.3:23206467-23206486 None:intergenic 30.0%
CCATGTTTCTTGTATTCATT+TGG + chr4.3:23206464-23206483 MS.gene052539:intron 30.0%
CCCTTATTAATTGTAGTTAG+TGG - chr4.3:23204255-23204274 None:intergenic 30.0%
CGACTACTATTATTTAGAGA+CGG + chr4.3:23204358-23204377 MS.gene052539:intron 30.0%
CTCATATTGTTCTTTGTACT+TGG + chr4.3:23207153-23207172 MS.gene052539:intron 30.0%
GAACAATATGAGTATATGAC+AGG - chr4.3:23207145-23207164 None:intergenic 30.0%
GAGGAAAGTAAGTAAATTCA+AGG - chr4.3:23204930-23204949 None:intergenic 30.0%
GGTCAAATGATGTATCTATT+TGG + chr4.3:23206276-23206295 MS.gene052539:CDS 30.0%
GGTGTATCAATATAATGCAA+AGG - chr4.3:23203918-23203937 None:intergenic 30.0%
GTTAGTGGAGTAGTTAATAA+TGG - chr4.3:23204240-23204259 None:intergenic 30.0%
TAACTACTTACATACAACTG+AGG + chr4.3:23206668-23206687 MS.gene052539:intron 30.0%
TACTATTATTTAGAGACGGA+GGG + chr4.3:23204362-23204381 MS.gene052539:intron 30.0%
TATTAAAATAACAAGGGGGT+TGG + chr4.3:23204387-23204406 MS.gene052539:intron 30.0%
TCAGTGGCTTACTATAATAT+GGG + chr4.3:23205118-23205137 MS.gene052539:intron 30.0%
TGATAGTTACACTTGAAATC+TGG - chr4.3:23203939-23203958 None:intergenic 30.0%
TGCATTTATTCAAATGATGG+GGG + chr4.3:23206123-23206142 MS.gene052539:intron 30.0%
TGCTTGTTTCATTTGAAGAT+AGG + chr4.3:23204903-23204922 MS.gene052539:intron 30.0%
TGGACACATTAAGAAATCTA+AGG - chr4.3:23204700-23204719 None:intergenic 30.0%
! AAAATTTTGTAATCTTCGCC+TGG + chr4.3:23206501-23206520 MS.gene052539:intron 30.0%
! AAATCCTTGATTTTCATCAG+TGG + chr4.3:23205102-23205121 MS.gene052539:intron 30.0%
! AAGGTTTTCTCAAAAGCTTA+TGG - chr4.3:23204612-23204631 None:intergenic 30.0%
! ATCAATTCACTGTATTTTCC+AGG - chr4.3:23206522-23206541 None:intergenic 30.0%
! ATCACACTTATTTCTTTGCT+TGG + chr4.3:23206184-23206203 MS.gene052539:intron 30.0%
! ATGTTCTTGTCACATTTTGT+TGG + chr4.3:23204982-23205001 MS.gene052539:CDS 30.0%
! GGAGTATTAAAATAACAAGG+GGG + chr4.3:23204383-23204402 MS.gene052539:intron 30.0%
! GTAAAAACAATAGTTGGTCT+TGG - chr4.3:23206236-23206255 None:intergenic 30.0%
! TATACAAGTTAGTTAGGTTG+CGG - chr4.3:23205468-23205487 None:intergenic 30.0%
! TCCAACGATAATGGTAATTA+TGG - chr4.3:23203890-23203909 None:intergenic 30.0%
! TGAGTATATGACAGGTATTT+TGG - chr4.3:23207137-23207156 None:intergenic 30.0%
! TGTTCTTGTCACATTTTGTT+GGG + chr4.3:23204983-23205002 MS.gene052539:CDS 30.0%
!! ATGACAGGTATTTTGGATTT+TGG - chr4.3:23207130-23207149 None:intergenic 30.0%
!! GAGGGAGTATTAAAATAACA+AGG + chr4.3:23204380-23204399 MS.gene052539:intron 30.0%
!! GGGAGTATTAAAATAACAAG+GGG + chr4.3:23204382-23204401 MS.gene052539:intron 30.0%
AAACTACCTTACAAAAGACG+AGG - chr4.3:23206879-23206898 None:intergenic 35.0%
AATTACAGACAACTTGACAG+AGG + chr4.3:23204954-23204973 MS.gene052539:intron 35.0%
ACAAACACTCCATGAACAAT+TGG - chr4.3:23205504-23205523 None:intergenic 35.0%
CATAAGCATAGATGTGTTAC+TGG + chr4.3:23204786-23204805 MS.gene052539:CDS 35.0%
CTACTATTATTTAGAGACGG+AGG + chr4.3:23204361-23204380 MS.gene052539:intron 35.0%
CTATGATACAGGCTATTCAA+AGG + chr4.3:23206068-23206087 MS.gene052539:CDS 35.0%
GAAACTCAATAACAGTTCGT+TGG + chr4.3:23205353-23205372 MS.gene052539:CDS 35.0%
GACAATTATTGTAAGACGGA+TGG - chr4.3:23204146-23204165 None:intergenic 35.0%
GCCATAATTACCATTATCGT+TGG + chr4.3:23203886-23203905 MS.gene052539:CDS 35.0%
GCCCAATATACAAGTTAGTT+AGG - chr4.3:23205474-23205493 None:intergenic 35.0%
GTATGAGAAGTCATTCTTCA+GGG - chr4.3:23207252-23207271 None:intergenic 35.0%
TAACAGCTATCAGCTTATCA+TGG - chr4.3:23204034-23204053 None:intergenic 35.0%
TAAGAAGCAATTTCGAAGGT+AGG - chr4.3:23205865-23205884 None:intergenic 35.0%
TAAGCCACTGATGAAAATCA+AGG - chr4.3:23205109-23205128 None:intergenic 35.0%
TAGATGACTACTTCCTTTCT+CGG + chr4.3:23207294-23207313 MS.gene052539:intron 35.0%
TAGTGTAGTGAAGAAGGTTA+GGG - chr4.3:23203714-23203733 None:intergenic 35.0%
TCCAGTAAAACCAACATGTA+GGG - chr4.3:23205323-23205342 None:intergenic 35.0%
TCCATGAACAATTGGAGAAA+AGG - chr4.3:23205496-23205515 None:intergenic 35.0%
TGAGCTAAGGGATAAGAATT+TGG + chr4.3:23204425-23204444 MS.gene052539:intron 35.0%
TGGCTTACTATAATATGGGT+AGG + chr4.3:23205122-23205141 MS.gene052539:intron 35.0%
TGTATGAGAAGTCATTCTTC+AGG - chr4.3:23207253-23207272 None:intergenic 35.0%
! CATTGTTTTCCTTAGCTTCA+TGG + chr4.3:23206912-23206931 MS.gene052539:intron 35.0%
! GAAGTAATTTGTGAAGCAGA+TGG - chr4.3:23204720-23204739 None:intergenic 35.0%
! GTATGCTATGCTATTTGATC+AGG + chr4.3:23205424-23205443 MS.gene052539:intron 35.0%
! GTTCTTGTCACATTTTGTTG+GGG + chr4.3:23204984-23205003 MS.gene052539:CDS 35.0%
!! TCTGCTCTGAAAAAGTTCTA+TGG + chr4.3:23206031-23206050 MS.gene052539:CDS 35.0%
!! TGTTTTTACTCACTTTCTGC+AGG + chr4.3:23206247-23206266 MS.gene052539:intron 35.0%
!!! AGTATGTTTGGTTTTGTTCC+AGG + chr4.3:23205985-23206004 MS.gene052539:intron 35.0%
!!! TTAGGTTTTGAATAGGAACC+AGG - chr4.3:23205031-23205050 None:intergenic 35.0%
!!! TTTGGTTTTGTTCCAGGTAT+GGG + chr4.3:23205991-23206010 MS.gene052539:intron 35.0%
!!! TTTTTCTGGTTCCCATTTTC+TGG + chr4.3:23205291-23205310 MS.gene052539:intron 35.0%
AACTCAACTCGTTTGAGCTA+AGG + chr4.3:23204412-23204431 MS.gene052539:intron 40.0%
AACTTCAAAACCGGGATTGA+TGG + chr4.3:23205167-23205186 MS.gene052539:intron 40.0%
AAGGACTACTCCAACGATAA+TGG - chr4.3:23203899-23203918 None:intergenic 40.0%
ACTCAACTCGTTTGAGCTAA+GGG + chr4.3:23204413-23204432 MS.gene052539:intron 40.0%
ACTTCAAAACCGGGATTGAT+GGG + chr4.3:23205168-23205187 MS.gene052539:intron 40.0%
AGAAAACCTTGTCACCAAAC+AGG + chr4.3:23204622-23204641 MS.gene052539:intron 40.0%
ATAACCATTCCCATCAATCC+CGG - chr4.3:23205180-23205199 None:intergenic 40.0%
CAAAATGATGAAGGTGGAAC+AGG - chr4.3:23206359-23206378 None:intergenic 40.0%
CAATAACAGTTCGTTGGTAC+AGG + chr4.3:23205359-23205378 MS.gene052539:CDS 40.0%
CCAGTAAAACCAACATGTAG+GGG - chr4.3:23205322-23205341 None:intergenic 40.0%
CTAGAGCAAAATGATGAAGG+TGG - chr4.3:23206365-23206384 None:intergenic 40.0%
CTCACTTTCTGCAGGATATT+TGG + chr4.3:23206255-23206274 MS.gene052539:intron 40.0%
CTCCAGTAAAACCAACATGT+AGG - chr4.3:23205324-23205343 None:intergenic 40.0%
CTGTCAAAACACAAACACAC+AGG - chr4.3:23206599-23206618 None:intergenic 40.0%
CTGTTATTGAGTTTCCACCT+AGG - chr4.3:23205348-23205367 None:intergenic 40.0%
GGAGACTGTCATGATTCTTA+TGG + chr4.3:23204762-23204781 MS.gene052539:intron 40.0%
GGTGGAACAGGAAATGTATT+AGG - chr4.3:23206347-23206366 None:intergenic 40.0%
GTAGTGTAGTGAAGAAGGTT+AGG - chr4.3:23203715-23203734 None:intergenic 40.0%
TAATCATGTTGTCCCATACC+TGG - chr4.3:23206006-23206025 None:intergenic 40.0%
TAATTATGGCGAATCTCGTC+AGG - chr4.3:23203876-23203895 None:intergenic 40.0%
TGCGTATAAGAATGCTACAC+CGG + chr4.3:23206766-23206785 MS.gene052539:CDS 40.0%
TGTACAAGAACATAGTGGCA+AGG - chr4.3:23205892-23205911 None:intergenic 40.0%
TTACTTCCAGATTCTGCTGA+AGG + chr4.3:23203825-23203844 MS.gene052539:CDS 40.0%
! AATAGACCTGTTTGGTGACA+AGG - chr4.3:23204631-23204650 None:intergenic 40.0%
! ATCTTGCTTCAGTTTGCTCT+TGG + chr4.3:23203850-23203869 MS.gene052539:CDS 40.0%
! GCCTTTTCTCCAATTGTTCA+TGG + chr4.3:23205492-23205511 MS.gene052539:intron 40.0%
! TTCACTAGCTTATCGGCTAT+CGG - chr4.3:23204075-23204094 None:intergenic 40.0%
! TTCATCAGGTTTGTTCTTCC+TGG + chr4.3:23205010-23205029 MS.gene052539:intron 40.0%
! TTTCCTCCTCGTCTTTTGTA+AGG + chr4.3:23206870-23206889 MS.gene052539:intron 40.0%
! TTTTGTTGGGGATGTTCATC+AGG + chr4.3:23204996-23205015 MS.gene052539:CDS 40.0%
!! TGCTTCTGAGAGTATTAGCT+TGG + chr4.3:23206733-23206752 MS.gene052539:CDS 40.0%
!!! GTTTGGTTTTGTTCCAGGTA+TGG + chr4.3:23205990-23206009 MS.gene052539:intron 40.0%
!!! TGCTGCTTTTTAGTTGTGAC+TGG + chr4.3:23205631-23205650 MS.gene052539:intron 40.0%
!!! TGTTTGTGTTTTGACAGCCA+TGG + chr4.3:23206602-23206621 MS.gene052539:intron 40.0%
AAAACCGGGATTGATGGGAA+TGG + chr4.3:23205173-23205192 MS.gene052539:intron 45.0%
AGATCACCTTCAGCAGAATC+TGG - chr4.3:23203834-23203853 None:intergenic 45.0%
AGGAAGCTTCCATGAAGCTA+AGG - chr4.3:23206924-23206943 None:intergenic 45.0%
ATCCTATAGAGCTTCCATGC+AGG - chr4.3:23205595-23205614 None:intergenic 45.0%
CTACCTTACAAAAGACGAGG+AGG - chr4.3:23206876-23206895 None:intergenic 45.0%
GAACCTTTAGCTACACATCC+TGG - chr4.3:23205841-23205860 None:intergenic 45.0%
GAGCAAGAATGCAATGCATG+AGG - chr4.3:23207049-23207068 None:intergenic 45.0%
GAGGAGTAGTGTAGTGAAGA+AGG - chr4.3:23203720-23203739 None:intergenic 45.0%
GATAGGAGAGGGGAAGATTA+TGG + chr4.3:23205667-23205686 MS.gene052539:intron 45.0%
GCGTATAAGAATGCTACACC+GGG + chr4.3:23206767-23206786 MS.gene052539:CDS 45.0%
GGAAAATCAAGGGAAGTCCA+TGG - chr4.3:23206622-23206641 None:intergenic 45.0%
GGTTGCCTATTGTGGAGAAA+AGG + chr4.3:23207315-23207334 MS.gene052539:CDS 45.0%
TAACAGTTCGTTGGTACAGG+AGG + chr4.3:23205362-23205381 MS.gene052539:CDS 45.0%
TACCTGCATGGAAGCTCTAT+AGG + chr4.3:23205590-23205609 MS.gene052539:intron 45.0%
TACTTGGGCATCAATGCACA+TGG + chr4.3:23207169-23207188 MS.gene052539:intron 45.0%
TAGCCAGGATGTGTAGCTAA+AGG + chr4.3:23205835-23205854 MS.gene052539:intron 45.0%
TGGTCTTCGGAGTGAAAATG+CGG - chr4.3:23207379-23207398 None:intergenic 45.0%
TGTCATATTCTCACCTAGCC+AGG + chr4.3:23205820-23205839 MS.gene052539:intron 45.0%
TTTAGCTACACATCCTGGCT+AGG - chr4.3:23205836-23205855 None:intergenic 45.0%
! ATCTAAGGCTCTGTTTGCCA+AGG - chr4.3:23204685-23204704 None:intergenic 45.0%
! GCTTGAGCTATTCTGGTCTT+CGG - chr4.3:23207392-23207411 None:intergenic 45.0%
! TTACCTTCCAAAGTGCTTCC+CGG - chr4.3:23206788-23206807 None:intergenic 45.0%
!! GTTGGTCTTGGGTCATATAC+AGG - chr4.3:23206224-23206243 None:intergenic 45.0%
!!! CCCCTACATGTTGGTTTTAC+TGG + chr4.3:23205319-23205338 MS.gene052539:CDS 45.0%
!!! GTTGGTTTTACTGGAGACCT+AGG + chr4.3:23205328-23205347 MS.gene052539:CDS 45.0%
!! TAATATATTAAAAATAACAA+GGG + chr4.3:23204498-23204517 MS.gene052539:intron 5.0%
AGTTCCACTGCTGCTATCAC+TGG + chr4.3:23203622-23203641 MS.gene052539:CDS 50.0%
ATCACGCAGCATGTCCAGAT+CGG + chr4.3:23206315-23206334 MS.gene052539:CDS 50.0%
CCACAATAGGCAACCGAGAA+AGG - chr4.3:23207310-23207329 None:intergenic 50.0%
CCTTTCTCGGTTGCCTATTG+TGG + chr4.3:23207307-23207326 MS.gene052539:CDS 50.0%
GCCTATTGTGGAGAAAAGGC+TGG + chr4.3:23207319-23207338 MS.gene052539:CDS 50.0%
TAGGGGCTGCACCAGAAAAT+GGG - chr4.3:23205305-23205324 None:intergenic 50.0%
TCGGAGTGAAAATGCGGTTG+AGG - chr4.3:23207373-23207392 None:intergenic 50.0%
TTTCCCCAAGCCAGAACAGT+GGG - chr4.3:23203653-23203672 None:intergenic 50.0%
! GCCAGCCTTTTCTCCACAAT+AGG - chr4.3:23207323-23207342 None:intergenic 50.0%
! GGTTTTACTGGAGACCTAGG+TGG + chr4.3:23205331-23205350 MS.gene052539:CDS 50.0%
! TTTTCCCCAAGCCAGAACAG+TGG - chr4.3:23203654-23203673 None:intergenic 50.0%
!! GTTCTGGCTTGGGGAAAAGA+TGG + chr4.3:23203656-23203675 MS.gene052539:CDS 50.0%
AACGCCAGTGATAGCAGCAG+TGG - chr4.3:23203629-23203648 None:intergenic 55.0%
GTAGGGGCTGCACCAGAAAA+TGG - chr4.3:23205306-23205325 None:intergenic 55.0%
! GAGAAAAGGCTGGCTCAAGG+TGG + chr4.3:23207329-23207348 MS.gene052539:CDS 55.0%
! GTATTAGGCACGCACCGATC+TGG - chr4.3:23206332-23206351 None:intergenic 55.0%
! GTGGAGAAAAGGCTGGCTCA+AGG + chr4.3:23207326-23207345 MS.gene052539:CDS 55.0%
!! ACACCGGGAAGCACTTTGGA+AGG + chr4.3:23206782-23206801 MS.gene052539:CDS 55.0%
!! GTTGCCCACTGTTCTGGCTT+GGG + chr4.3:23203646-23203665 MS.gene052539:CDS 55.0%
!! TGCTACACCGGGAAGCACTT+TGG + chr4.3:23206778-23206797 MS.gene052539:CDS 55.0%
!! TTGCCCACTGTTCTGGCTTG+GGG + chr4.3:23203647-23203666 MS.gene052539:CDS 55.0%
ACTGGCGTTGCCCACTGTTC+TGG + chr4.3:23203640-23203659 MS.gene052539:CDS 60.0%
CTGGTGCAGCCCCTACATGT+TGG + chr4.3:23205310-23205329 MS.gene052539:intron 60.0%
! CGTTGCCCACTGTTCTGGCT+TGG + chr4.3:23203645-23203664 MS.gene052539:CDS 60.0%


Chromosome Type Strat End Strand Name
chr4.3 gene 23203587 23207415 23203587 ID=MS.gene052539
chr4.3 mRNA 23203587 23207415 23203587 ID=MS.gene052539.t1;Parent=MS.gene052539
chr4.3 exon 23203587 23203706 23203587 ID=MS.gene052539.t1.exon1;Parent=MS.gene052539.t1
chr4.3 CDS 23203587 23203706 23203587 ID=cds.MS.gene052539.t1;Parent=MS.gene052539.t1
chr4.3 exon 23203786 23203966 23203786 ID=MS.gene052539.t1.exon2;Parent=MS.gene052539.t1
chr4.3 CDS 23203786 23203966 23203786 ID=cds.MS.gene052539.t1;Parent=MS.gene052539.t1
chr4.3 exon 23204763 23204873 23204763 ID=MS.gene052539.t1.exon3;Parent=MS.gene052539.t1
chr4.3 CDS 23204763 23204873 23204763 ID=cds.MS.gene052539.t1;Parent=MS.gene052539.t1
chr4.3 exon 23204962 23205017 23204962 ID=MS.gene052539.t1.exon4;Parent=MS.gene052539.t1
chr4.3 CDS 23204962 23205017 23204962 ID=cds.MS.gene052539.t1;Parent=MS.gene052539.t1
chr4.3 exon 23205319 23205402 23205319 ID=MS.gene052539.t1.exon5;Parent=MS.gene052539.t1
chr4.3 CDS 23205319 23205402 23205319 ID=cds.MS.gene052539.t1;Parent=MS.gene052539.t1
chr4.3 exon 23206007 23206099 23206007 ID=MS.gene052539.t1.exon6;Parent=MS.gene052539.t1
chr4.3 CDS 23206007 23206099 23206007 ID=cds.MS.gene052539.t1;Parent=MS.gene052539.t1
chr4.3 exon 23206269 23206336 23206269 ID=MS.gene052539.t1.exon7;Parent=MS.gene052539.t1
chr4.3 CDS 23206269 23206336 23206269 ID=cds.MS.gene052539.t1;Parent=MS.gene052539.t1
chr4.3 exon 23206730 23206803 23206730 ID=MS.gene052539.t1.exon8;Parent=MS.gene052539.t1
chr4.3 CDS 23206730 23206803 23206730 ID=cds.MS.gene052539.t1;Parent=MS.gene052539.t1
chr4.3 exon 23207297 23207415 23207297 ID=MS.gene052539.t1.exon9;Parent=MS.gene052539.t1
chr4.3 CDS 23207297 23207415 23207297 ID=cds.MS.gene052539.t1;Parent=MS.gene052539.t1
Gene Sequence

>MS.gene052539

ATGGTTCGGAACACACTCACGATGATAACGCTCTTAGTTCCACTGCTGCTATCACTGGCGTTGCCCACTGTTCTGGCTTGGGGAAAAGATGGTCACTATGCAATTTGTAAAATTTCACAGGTAACCCTAACCTTCTTCACTACACTACTCCTCACCTAATTCATCATTTGATTCTAATAAATTCAAACCCTAATTTTAGGAGTATCTTAGTGAAGATGCTCTATTTGCAGTCAAACAATTACTTCCAGATTCTGCTGAAGGTGATCTTGCTTCAGTTTGCTCTTGGCCTGACGAGATTCGCCATAATTACCATTATCGTTGGAGTAGTCCTTTGCATTATATTGATACACCAGATTTCAAGTGTAACTATCAATATTGTAGTAAGTAATTTAATTCTTGTGCCAACACCATTATTTCATGTTTAAGCTCTGTTTGCTAAAAAGTCCATGATAAGCTGATAGCTGTTAAGTTAACAGACAAGCTAGCCGATAGCCGATAAGCTAGTGAATTGAATTTTTAGTGTTTGGATTAACACATAAATATGAAACGACATACTCCATCCGTCTTACAATAATTGTCTTTTACCCATTTTTCTGTTTCTCAAAATAATTGTTACTTTAGAATACCAATGCAACAATTATTATTTTTTTCCATTATTAACTACTCCACTAACTACAATTAATAAGGGTGTTTTAGTAAATGATATACTAATTTTACCATTAAAATTAACACAATTAATCATTTCGTTAATAATCGTGCATAAACCTTAAACGACTACTATTATTTAGAGACGGAGGGAGTATTAAAATAACAAGGGGGTTGGTTAACTCAACTCGTTTGAGCTAAGGGATAAGAATTTGGAGATCTTGTCATCGTGAGTTCAAACTCAGACGAAAGAGTAAATATTAATCTAATATATTAAAAATAACAAGGGTAAAATTGAGAGAAGAAATGATAAGCTATAAGTTCATACGCTACTTGAAGTGACTTATCAAAAAATGTTATAAATCAGTAAAAAAATACCATAAGCTTTTGAGAAAACCTTGTCACCAAACAGGTCTATTTTTGTCATGTGTTTATAAACTCAAAAATTGACCTTGGCAAACAGAGCCTTAGATTTCTTAATGTGTCCATCTGCTTCACAAATTACTTCAACGTTTCTTGGAATTCTTATAGGAGACTGTCATGATTCTTATGGACATAAGCATAGATGTGTTACTGGAGCAATATACAATTATACAATGCAATTGAAATTAGCTAATGCTGATGCTTCATCTGAATTAAAATGTAAGCATTTATGGATTACGTTGTTAATTTGCTTGTTTCATTTGAAGATAGGTCCTTGAATTTACTTACTTTCCTCTCTTAATTACAGACAACTTGACAGAGGCACTTATGTTCTTGTCACATTTTGTTGGGGATGTTCATCAGGTTTGTTCTTCCTGGTTCCTATTCAAAACCTAATGAACAATTGAACAAATACCTAGTTTAATTTAAGAAGTACATACGATTTCCAAATCCTTGATTTTCATCAGTGGCTTACTATAATATGGGTAGGTAAGTTGAGAAATAAGAATGTTAACTTCAAAACCGGGATTGATGGGAATGGTTATGATATTATTCATTGTGTATATAATAAAAATTAAAATCACATGGTTAAATATATTTTCTCTTTCAAAAAATTGTGCTTTTGAGGTGATATTTTTTTTCTGGTTCCCATTTTCTGGTGCAGCCCCTACATGTTGGTTTTACTGGAGACCTAGGTGGAAACTCAATAACAGTTCGTTGGTACAGGAGGAAAACAAATCTTCATCACGTAAGTGCTACAGATCAGATTGTATGCTATGCTATTTGATCAGGCTAATTGCATTTCGCATTCCGCAACCTAACTAACTTGTATATTGGGCCTTTTCTCCAATTGTTCATGGAGTGTTTGTGATTAATTCAGAATTTGCCTTTTCCTTCTTTTATTTTATTAAAGATTGACAGTTATATCATAACTTTACCTGCATGGAAGCTCTATAGGATTATTGATTTCGTATATTGCTGCTTTTTAGTTGTGACTGGAAGAAATAAATTAGATAGGAGAGGGGAAGATTATGGATCTATATATAATAAAAGGTTAAAGTAATAAATTTGAATTCTATGTATGCCATAGATTTTTAAACTTGGCGTTTGATGTCATACTTTTGTATTCTGTTAGAAAGTGGTTTAGATTTTTAACTAAAAGACTTGTCATATTCTCACCTAGCCAGGATGTGTAGCTAAAGGTTCACCTACCTTCGAAATTGCTTCTTATTTACCTTGCCACTATGTTCTTGTACACATTTTCTTTTGGTTTTGATCTGTTGATCATAATGTTTGTGCTACCTGTCCTTGTTAATAATATAGTAAATTTAGTATGTTTGGTTTTGTTCCAGGTATGGGACAACATGATTATTGAGTCTGCTCTGAAAAAGTTCTATGGTTCAGATCTTTCAACTATGATACAGGCTATTCAAAGGAATATTAGTGTAATCTCTTCACTGTATCTTTATGCATTTATTCAAATGATGGGGGTACCAAGCATAGATAAATTGATGTTTTTTCTTTTGGCCATCACACTTATTTCTTTGCTTGGACTTGTAATGTGTACCTGTATATGACCCAAGACCAACTATTGTTTTTACTCACTTTCTGCAGGATATTTGGTCAAATGATGTATCTATTTGGGAACATTGTGCACACAATCACGCAGCATGTCCAGATCGGTGCGTGCCTAATACATTTCCTGTTCCACCTTCATCATTTTGCTCTAGTTTTAACTGATTGATTGCTGAGTATTGAATTGTTTACACTTTTTATTGCTTGGCAGTCAATATTTTCGTATCTCTGTTGCCATGTTTCTTGTATTCATTTGGTGTGCCTCATTGTCAAAATTTTGTAATCTTCGCCTGGAAAATACAGTGAATTGATGATTTTGAAATTCCTTATCGAATTCTATTCATGTTCAATGCTATAAAATGTTAGCCTGTGTGTTTGTGTTTTGACAGCCATGGACTTCCCTTGATTTTCCATAATTGCATATTACTAGATATTAAATAACTACTTACATACAACTGAGGATAAGAAATTGATATCATGATTTTGCTGATTATATTCAGGTATGCTTCTGAGAGTATTAGCTTGGCATGCAAGTTTGCGTATAAGAATGCTACACCGGGAAGCACTTTGGAAGGTAATTCCCTAGTTTTTCATCTATAAACAAAAATATTTTTGGAACTCTAGAGTCTTCAGCTAGAGATTTCCTCCTCGTCTTTTGTAAGGTAGTTTTGTTTACTGAGCTCATTGTTTTCCTTAGCTTCATGGAAGCTTCCTTGTTTTATAAGAAAAAGGGACTGATTTTCTCATTTGAACAAATCTATTTCATTCTACGCTTTTCTGTATTGTGTTCTTTTCTATTTTAAGAGGATTATTGATCCTCATGCATTGCATTCTTGCTCTTTTCTAGATTTCTAGTGAATCATTTTTCTATTTATCGATTGATCAACAACAATAAAACCAAAATCCAAAATACCTGTCATATACTCATATTGTTCTTTGTACTTGGGCATCAATGCACATGGCCAATAACTTTTGATGATTGCAATCGTGTACAATTTTTTTTCTCTTTATTTCATAATCCCTGAAGAATGACTTCTCATACATTGTTATTCTTCTTGATGATGTAGATGACTACTTCCTTTCTCGGTTGCCTATTGTGGAGAAAAGGCTGGCTCAAGGTGGTGTGCGACTTGCAGCTATCCTCAACCGCATTTTCACTCCGAAGACCAGAATAGCTCAAGCTTAA

Protein sequence

>MS.gene052539.t1

MVRNTLTMITLLVPLLLSLALPTVLAWGKDGHYAICKISQEYLSEDALFAVKQLLPDSAEGDLASVCSWPDEIRHNYHYRWSSPLHYIDTPDFKCNYQYCRDCHDSYGHKHRCVTGAIYNYTMQLKLANADASSELKYNLTEALMFLSHFVGDVHQPLHVGFTGDLGGNSITVRWYRRKTNLHHVWDNMIIESALKKFYGSDLSTMIQAIQRNISDIWSNDVSIWEHCAHNHAACPDRYASESISLACKFAYKNATPGSTLEDDYFLSRLPIVEKRLAQGGVRLAAILNRIFTPKTRIAQA