AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene002383

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene002383.t1 MTR_2g012440 98.013 302 6 0 1 302 1 302 0.0 625
MS.gene002383.t1 MTR_2g012440 97.468 237 6 0 1 237 1 237 1.33e-177 490
MS.gene002383.t1 MTR_4g090610 52.206 272 122 4 27 291 15 285 1.84e-104 306
MS.gene002383.t1 MTR_4g090610 52.206 272 122 4 27 291 59 329 2.73e-104 308
MS.gene002383.t1 MTR_4g090610 52.206 272 122 4 27 291 104 374 4.49e-104 309
MS.gene002383.t1 MTR_1g110510 45.583 283 142 5 15 291 7 283 2.26e-90 271
MS.gene002383.t1 MTR_5g056140 46.127 284 140 6 16 291 8 286 1.09e-87 264
MS.gene002383.t1 MTR_5g056160 45.263 285 145 5 16 293 8 288 3.75e-85 258
MS.gene002383.t1 MTR_4g090610 53.125 192 84 2 27 212 15 206 2.55e-73 226
MS.gene002383.t1 MTR_4g090610 53.125 192 84 2 27 212 59 250 4.13e-73 227
MS.gene002383.t1 MTR_1g110510 47.706 218 103 4 16 228 8 219 3.04e-70 217
MS.gene002383.t1 MTR_5g056560 50.400 125 60 2 137 260 35 158 1.16e-36 130
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene002383.t1 AT1G11190 70.671 283 77 2 26 302 23 305 6.79e-151 425
MS.gene002383.t1 AT1G68290 50.000 298 135 6 1 292 1 290 2.44e-103 304
MS.gene002383.t1 AT4G21585 50.909 275 127 4 25 292 18 291 1.30e-102 302
MS.gene002383.t1 AT4G21585 50.909 275 127 4 25 292 18 291 1.30e-102 302
MS.gene002383.t1 AT4G21585 46.512 301 127 5 25 292 18 317 9.10e-97 288
MS.gene002383.t1 AT4G21585 46.205 303 127 5 25 292 18 319 2.61e-96 287
MS.gene002383.t1 AT4G21590 49.814 269 132 3 25 291 18 285 3.24e-94 281
MS.gene002383.t1 AT4G21590 49.814 269 132 3 25 291 18 285 3.24e-94 281
MS.gene002383.t1 AT4G21600 47.636 275 135 5 25 291 14 287 1.49e-89 269
MS.gene002383.t1 AT4G21585 44.898 245 101 5 25 236 18 261 3.42e-72 223
MS.gene002383.t1 AT4G21585 44.898 245 101 5 25 236 18 261 3.42e-72 223

Find 61 sgRNAs with CRISPR-Local

Find 162 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTGTTCTTGTCACACTTTA+TGG 0.191189 2.4:-71806299 MS.gene002383:CDS
GTGTATGGCCTGATCAAATT+AGG 0.272622 2.4:-71806743 MS.gene002383:CDS
GTCAGATGATGTTGCTTCTT+GGG 0.326798 2.4:-71805778 MS.gene002383:CDS
GGTCAGATGATGTTGCTTCT+TGG 0.337853 2.4:-71805779 MS.gene002383:CDS
TTTCTTGGATGCAGGGAATC+TGG 0.348070 2.4:-71805800 MS.gene002383:intron
TTGTTCTTGTCACACTTTAT+GGG 0.352767 2.4:-71806298 MS.gene002383:CDS
AAATCTGGAATGACTCTATC+AGG 0.358466 2.4:-71805555 MS.gene002383:intron
ATCATAGTACCTGGTGTCAT+TGG 0.368732 2.4:-71807447 MS.gene002383:CDS
CATGAGGATATGTGTGTTGC+AGG 0.383138 2.4:-71806524 MS.gene002383:CDS
ACTTATCAGCCCTTTGTGTA+TGG 0.393900 2.4:-71806758 MS.gene002383:CDS
ATGATTCTGAACCAAGTGTT+TGG 0.402598 2.4:-71804984 MS.gene002383:CDS
TACCAGTGCCTAATTTGATC+AGG 0.423305 2.4:+71806735 None:intergenic
GCATACAAATAGCTTGCAAA+TGG 0.430035 2.4:-71805593 MS.gene002383:CDS
GGCACTGGTACAAATATAGA+TGG 0.436647 2.4:-71806722 MS.gene002383:CDS
GGTTATGAAGGAGTTAAATC+TGG 0.439936 2.4:-71805570 MS.gene002383:CDS
GGCGAGATTGAAAGGTTTGA+TGG 0.451678 2.4:-71807514 MS.gene002383:CDS
CATACAAATAGCTTGCAAAT+GGG 0.452050 2.4:-71805592 MS.gene002383:CDS
CTTCAGAGTCTCCAAACACT+TGG 0.462625 2.4:+71804973 None:intergenic
TTGATGGTGTCTCTTCCACT+TGG 0.484743 2.4:-71807498 MS.gene002383:CDS
AAACACTTGGTTCAGAATCA+TGG 0.494857 2.4:+71804986 None:intergenic
TGAACTGCTTCTGATGCCTC+AGG 0.499507 2.4:+71806810 None:intergenic
CAGAAGAATACTTTGACTCA+AGG 0.500412 2.4:-71805055 MS.gene002383:CDS
CAACTTTCTCATTACAAAGA+GGG 0.507826 2.4:-71806479 MS.gene002383:CDS
TGCTTCTTGGGAACATTGCA+AGG 0.512844 2.4:-71805766 MS.gene002383:CDS
GTGTTTGGAGACTCTGAAGA+AGG 0.514236 2.4:-71804969 MS.gene002383:CDS
GCTTGCAAATGGGGTTATGA+AGG 0.514371 2.4:-71805582 MS.gene002383:CDS
TTGTTACCTCCCCATGTCAA+TGG 0.519904 2.4:-71806783 MS.gene002383:CDS
TTAGATATGGCGAGATTGAA+AGG 0.527224 2.4:-71807522 None:intergenic
TTGATCAGGCCATACACAAA+GGG 0.534241 2.4:+71806749 None:intergenic
GTCATTGGATGGAGCAAAGA+GGG 0.537487 2.4:-71807432 MS.gene002383:CDS
TAGTACCTGGTGTCATTGGA+TGG 0.539152 2.4:-71807443 MS.gene002383:CDS
CAATTGATCTACGCTGGTAT+CGG 0.540639 2.4:-71806140 MS.gene002383:CDS
GCAATTCGCTTCATGACATA+CGG 0.542919 2.4:+71805029 None:intergenic
AGACTCTGAAGAAGGATTTG+TGG 0.545154 2.4:-71804961 MS.gene002383:CDS
TCAACTTTCTCATTACAAAG+AGG 0.566465 2.4:-71806480 MS.gene002383:CDS
CTGATAAGTTACCATTGACA+TGG 0.566583 2.4:+71806772 None:intergenic
TCTACTTTCATCATAGTACC+TGG 0.569857 2.4:-71807456 MS.gene002383:CDS
GGCCTGATCAAATTAGGCAC+TGG 0.574012 2.4:-71806737 MS.gene002383:CDS
GAGGTGAATCCAACGTGCAT+CGG 0.577676 2.4:+71806180 None:intergenic
GTTGGATTCACCTCAGACAA+AGG 0.581712 2.4:-71806171 MS.gene002383:CDS
TGTGTTTCCACCTTTGTCTG+AGG 0.582088 2.4:+71806161 None:intergenic
GATGACATGTCTAATTGCAC+AGG 0.594566 2.4:-71807403 MS.gene002383:intron
ATACAAATAGCTTGCAAATG+GGG 0.599056 2.4:-71805591 MS.gene002383:CDS
CTGCAACACACATATCCTCA+TGG 0.607440 2.4:+71806525 None:intergenic
CTTTATGGGAGATATTCACC+AGG 0.613075 2.4:-71806284 MS.gene002383:intron
AAGTTACCATTGACATGGGG+AGG 0.613267 2.4:+71806777 None:intergenic
GAAACACAATTGATCTACGC+TGG 0.614736 2.4:-71806146 MS.gene002383:CDS
TTTGATCAGGCCATACACAA+AGG 0.615065 2.4:+71806748 None:intergenic
GTCATGAAGCGAATTGCTCA+AGG 0.617583 2.4:-71805023 MS.gene002383:CDS
TGATAAGTTACCATTGACAT+GGG 0.619961 2.4:+71806773 None:intergenic
TGACAAGAACAATAATGCCT+CGG 0.623745 2.4:+71806309 None:intergenic
GGTGTGTCAATGAAATGAAG+TGG 0.644809 2.4:+71806693 None:intergenic
TTGCTCCATCCAATGACACC+AGG 0.646308 2.4:+71807438 None:intergenic
AAGAACAACACAAATCCAAG+TGG 0.649453 2.4:+71807483 None:intergenic
TGTCATTGGATGGAGCAAAG+AGG 0.656727 2.4:-71807433 MS.gene002383:CDS
GGATTCACCTCAGACAAAGG+TGG 0.681668 2.4:-71806168 MS.gene002383:CDS
ATGAAGCGAATTGCTCAAGG+TGG 0.685248 2.4:-71805020 MS.gene002383:CDS
ATATTTCAGCCGATGCACGT+TGG 0.693369 2.4:-71806189 MS.gene002383:intron
AAACATAGGGGACTGCCATG+AGG 0.699367 2.4:-71806540 MS.gene002383:intron
TATTGCAGATAATATGACCG+AGG 0.722861 2.4:-71806326 MS.gene002383:intron
GATAAGTTACCATTGACATG+GGG 0.735979 2.4:+71806774 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATAATAAGTTGATTTTATT+TGG + chr2.4:71806648-71806667 None:intergenic 10.0%
!! AATGTTTAGATTTCTTATAT+TGG - chr2.4:71806808-71806827 MS.gene002383:CDS 15.0%
!! ATAATTTCTATATGATTGAT+AGG - chr2.4:71805622-71805641 MS.gene002383:intron 15.0%
!! CTAAAAAAAACAAAAAATCA+TGG + chr2.4:71807338-71807357 None:intergenic 15.0%
!! TAAGTATAAAAATTTCTGAA+AGG + chr2.4:71806061-71806080 None:intergenic 15.0%
!! TATTATTGGAATCATAATTA+TGG - chr2.4:71805588-71805607 MS.gene002383:CDS 15.0%
!! TCTAAACATTAATTAACATT+AGG + chr2.4:71806798-71806817 None:intergenic 15.0%
!! TTATTTATTTATTTGTCATC+TGG + chr2.4:71807080-71807099 None:intergenic 15.0%
!! TTTATCAAATTAATCTTATC+TGG + chr2.4:71806248-71806267 None:intergenic 15.0%
!!! AAAATCAACTTATTATTTCT+TGG - chr2.4:71806651-71806670 MS.gene002383:intron 15.0%
!!! ATTTGTATATGTAGTTATTT+TGG - chr2.4:71805834-71805853 MS.gene002383:intron 15.0%
!!! TTAAAAATTGTTACTTACAT+TGG + chr2.4:71806571-71806590 None:intergenic 15.0%
!! AAAAAAACAAAAAATCATGG+AGG + chr2.4:71807335-71807354 None:intergenic 20.0%
!! AAACATTAATTAACATTAGG+AGG + chr2.4:71806795-71806814 None:intergenic 20.0%
!! AAGTCAAACATAACTATTTA+TGG - chr2.4:71805390-71805409 MS.gene002383:intron 20.0%
!! GTCAAGAAAATAATATTAAC+CGG - chr2.4:71806114-71806133 MS.gene002383:intron 20.0%
!! TACTTCATGATATTAATTAC+TGG - chr2.4:71806084-71806103 MS.gene002383:intron 20.0%
!! TATTTCTTAGAATTGTCTTT+CGG + chr2.4:71805435-71805454 None:intergenic 20.0%
!!! TTTCTAAAACATTGCTTTAA+AGG - chr2.4:71807252-71807271 MS.gene002383:intron 20.0%
! AAAATATATTGAACCAACCA+CGG - chr2.4:71807121-71807140 MS.gene002383:intron 25.0%
! AAAATGATATACACTGTGTT+TGG - chr2.4:71805149-71805168 MS.gene002383:intron 25.0%
! AAATTCAACCACTTATTGAT+AGG - chr2.4:71806954-71806973 MS.gene002383:intron 25.0%
! ATCAAATTAATCTTATCTGG+TGG + chr2.4:71806245-71806264 None:intergenic 25.0%
! CTGGTTATGAATAAGTATAA+GGG - chr2.4:71805505-71805524 MS.gene002383:intron 25.0%
! TAAAAATCTTTAGACAAACC+TGG + chr2.4:71806203-71806222 None:intergenic 25.0%
! TCAATAAGTGGTTGAATTTA+TGG + chr2.4:71806953-71806972 None:intergenic 25.0%
! TGGTTTAATCAATACAACTA+CGG - chr2.4:71807049-71807068 MS.gene002383:intron 25.0%
! TTTGAACTAATCATGTAGTT+GGG - chr2.4:71806841-71806860 MS.gene002383:intron 25.0%
!! AAGAATCTAAAATTCGCTTA+AGG + chr2.4:71806419-71806438 None:intergenic 25.0%
!! TATAGTTTTTCTCAATGTCT+TGG + chr2.4:71806548-71806567 None:intergenic 25.0%
!! TTTTGAACTAATCATGTAGT+TGG - chr2.4:71806840-71806859 MS.gene002383:intron 25.0%
!!! ACACACTTAGATTTGATTTT+GGG - chr2.4:71805344-71805363 MS.gene002383:intron 25.0%
!!! GGGTAATTTTTTTTTGATCA+AGG - chr2.4:71805555-71805574 MS.gene002383:intron 25.0%
!!! TACACACTTAGATTTGATTT+TGG - chr2.4:71805343-71805362 MS.gene002383:intron 25.0%
!!! TTTTCTTGTTTATGCTCATA+AGG - chr2.4:71806455-71806474 MS.gene002383:intron 25.0%
AAAATATGTTACTAGCAGAC+TGG - chr2.4:71806378-71806397 MS.gene002383:intron 30.0%
AAATCACTGTTACTCTTGAA+GGG - chr2.4:71805535-71805554 MS.gene002383:intron 30.0%
AAGCAACAAATTTGTGAAAC+AGG - chr2.4:71807308-71807327 MS.gene002383:intron 30.0%
ATTGTTCTTGTCACACTTTA+TGG - chr2.4:71806167-71806186 MS.gene002383:CDS 30.0%
CAACTTTCTCATTACAAAGA+GGG - chr2.4:71805987-71806006 MS.gene002383:CDS 30.0%
CATCATTCATTCCATGTTAA+AGG - chr2.4:71807364-71807383 MS.gene002383:intron 30.0%
GAGATTGATGAAATTGAAAG+TGG + chr2.4:71806766-71806785 None:intergenic 30.0%
GCTGGTTATGAATAAGTATA+AGG - chr2.4:71805504-71805523 MS.gene002383:intron 30.0%
GGTTTAATCAATACAACTAC+GGG - chr2.4:71807050-71807069 MS.gene002383:intron 30.0%
GTATCAAATGATTATCATGC+TGG - chr2.4:71805486-71805505 MS.gene002383:intron 30.0%
TCAACTTTCTCATTACAAAG+AGG - chr2.4:71805986-71806005 MS.gene002383:CDS 30.0%
TGATAAGTTACCATTGACAT+GGG + chr2.4:71805696-71805715 None:intergenic 30.0%
TGCAACAAAATCCTTTAACA+TGG + chr2.4:71807378-71807397 None:intergenic 30.0%
TTAGTACTGCGTTTGTAAAA+CGG + chr2.4:71805298-71805317 None:intergenic 30.0%
TTGTTCTTGTCACACTTTAT+GGG - chr2.4:71806168-71806187 MS.gene002383:CDS 30.0%
! ACTTATTATTTCTTGGATGC+AGG - chr2.4:71806658-71806677 MS.gene002383:intron 30.0%
! ATACAAATAGCTTGCAAATG+GGG - chr2.4:71806875-71806894 MS.gene002383:intron 30.0%
! CATACAAATAGCTTGCAAAT+GGG - chr2.4:71806874-71806893 MS.gene002383:intron 30.0%
! CTTATTATTTCTTGGATGCA+GGG - chr2.4:71806659-71806678 MS.gene002383:intron 30.0%
! TGAAATCCACATTTTTCATC+TGG + chr2.4:71805797-71805816 None:intergenic 30.0%
! TGTTGCTGTTAACAAACATA+GGG - chr2.4:71805913-71805932 MS.gene002383:intron 30.0%
! TTGTTGCTGTTAACAAACAT+AGG - chr2.4:71805912-71805931 MS.gene002383:intron 30.0%
! TTTTTGATCAAGGTCATGAA+GGG - chr2.4:71805565-71805584 MS.gene002383:CDS 30.0%
!! CTTAGATTTGATTTTGGGAA+TGG - chr2.4:71805349-71805368 MS.gene002383:intron 30.0%
!!! AAAGCAACGTTTTAAAAACC+TGG - chr2.4:71806986-71807005 MS.gene002383:intron 30.0%
!!! TTTTTTGATCAAGGTCATGA+AGG - chr2.4:71805564-71805583 MS.gene002383:CDS 30.0%
AAAATCACGTATGCACTTTC+CGG - chr2.4:71805191-71805210 MS.gene002383:intron 35.0%
AAACACTTGGTTCAGAATCA+TGG + chr2.4:71807483-71807502 None:intergenic 35.0%
AAACCAATTGAGTCATGATC+CGG + chr2.4:71807035-71807054 None:intergenic 35.0%
AACATCTGATCGTAGATGTA+AGG - chr2.4:71806010-71806029 MS.gene002383:intron 35.0%
AAGAACAACACAAATCCAAG+TGG + chr2.4:71804986-71805005 None:intergenic 35.0%
AAGAGAAGCCTATCAATAAG+TGG + chr2.4:71806965-71806984 None:intergenic 35.0%
ACATCTGATCGTAGATGTAA+GGG - chr2.4:71806011-71806030 MS.gene002383:intron 35.0%
ACGGAGTTTGATGAAAATCA+AGG + chr2.4:71805279-71805298 None:intergenic 35.0%
ACTAACAAACATAGTGTGTC+TGG - chr2.4:71805112-71805131 MS.gene002383:intron 35.0%
ACTGAACTAGCCAATTAAAC+CGG + chr2.4:71807228-71807247 None:intergenic 35.0%
ATGATTCTGAACCAAGTGTT+TGG - chr2.4:71807482-71807501 MS.gene002383:CDS 35.0%
CAAATCACTGTTACTCTTGA+AGG - chr2.4:71805534-71805553 MS.gene002383:intron 35.0%
CAGAAGAATACTTTGACTCA+AGG - chr2.4:71807411-71807430 MS.gene002383:CDS 35.0%
CATATTATCTGCAATATCGC+CGG + chr2.4:71806136-71806155 None:intergenic 35.0%
CTGATAAGTTACCATTGACA+TGG + chr2.4:71805697-71805716 None:intergenic 35.0%
GATAAGTTACCATTGACATG+GGG + chr2.4:71805695-71805714 None:intergenic 35.0%
GGTTATGAAGGAGTTAAATC+TGG - chr2.4:71806896-71806915 MS.gene002383:intron 35.0%
GTTAGCTAGAAGCTAGTATT+TGG + chr2.4:71805245-71805264 None:intergenic 35.0%
TAGTCAGTTCTATGTTCAAC+CGG - chr2.4:71807206-71807225 MS.gene002383:intron 35.0%
TATTGCAGATAATATGACCG+AGG - chr2.4:71806140-71806159 MS.gene002383:CDS 35.0%
TCTACTTTCATCATAGTACC+TGG - chr2.4:71805010-71805029 MS.gene002383:CDS 35.0%
TGACAAGAACAATAATGCCT+CGG + chr2.4:71806160-71806179 None:intergenic 35.0%
TGTTTATGCTCATAAGGTGT+GGG - chr2.4:71806461-71806480 MS.gene002383:intron 35.0%
TTGTCTTTCGGTTATCGATA+CGG + chr2.4:71805423-71805442 None:intergenic 35.0%
TTGTTTATGCTCATAAGGTG+TGG - chr2.4:71806460-71806479 MS.gene002383:intron 35.0%
! AAAGGATTTTGTTGCATGTG+TGG - chr2.4:71807382-71807401 MS.gene002383:intron 35.0%
! AAATCATGGCAAAAAAGCAC+CGG + chr2.4:71805213-71805232 None:intergenic 35.0%
! AAATCTGGAATGACTCTATC+AGG - chr2.4:71806911-71806930 MS.gene002383:intron 35.0%
! AGTTTTTCTCAATGTCTTGG+AGG + chr2.4:71806545-71806564 None:intergenic 35.0%
! CTATGTTCAACCGGTTTAAT+TGG - chr2.4:71807215-71807234 MS.gene002383:intron 35.0%
! GCATACAAATAGCTTGCAAA+TGG - chr2.4:71806873-71806892 MS.gene002383:intron 35.0%
! GTGATTTTGTGTGTTGCAAA+CGG + chr2.4:71805179-71805198 None:intergenic 35.0%
! GTTGCTGTTAACAAACATAG+GGG - chr2.4:71805914-71805933 MS.gene002383:intron 35.0%
! TGATTTTGTGTGTTGCAAAC+GGG + chr2.4:71805178-71805197 None:intergenic 35.0%
!! AAGGTCATGAAGGGTATTAT+TGG - chr2.4:71805574-71805593 MS.gene002383:CDS 35.0%
!! CATAGAACTGACTAGTTTGT+CGG + chr2.4:71807200-71807219 None:intergenic 35.0%
!! TTTGTCGGTTAGTTTGATCT+CGG + chr2.4:71807185-71807204 None:intergenic 35.0%
!!! TGAGCACGTGGATTTTTTAT+TGG - chr2.4:71806620-71806639 MS.gene002383:intron 35.0%
ACATTGCAGTATGATTGCAC+CGG + chr2.4:71807152-71807171 None:intergenic 40.0%
ACTTATCAGCCCTTTGTGTA+TGG - chr2.4:71805708-71805727 MS.gene002383:intron 40.0%
CAATTGATCTACGCTGGTAT+CGG - chr2.4:71806326-71806345 MS.gene002383:intron 40.0%
CCACGTGCTCATTAAAATCT+AGG + chr2.4:71806611-71806630 None:intergenic 40.0%
CTTTATGGGAGATATTCACC+AGG - chr2.4:71806182-71806201 MS.gene002383:CDS 40.0%
GAAACACAATTGATCTACGC+TGG - chr2.4:71806320-71806339 MS.gene002383:CDS 40.0%
GACACACCAGATGAAAAATG+TGG - chr2.4:71805788-71805807 MS.gene002383:CDS 40.0%
GATGACATGTCTAATTGCAC+AGG - chr2.4:71805063-71805082 MS.gene002383:intron 40.0%
GCAATTCGCTTCATGACATA+CGG + chr2.4:71807440-71807459 None:intergenic 40.0%
GGTGTGTCAATGAAATGAAG+TGG + chr2.4:71805776-71805795 None:intergenic 40.0%
GTGTATGGCCTGATCAAATT+AGG - chr2.4:71805723-71805742 MS.gene002383:intron 40.0%
TACCAGTGCCTAATTTGATC+AGG + chr2.4:71805734-71805753 None:intergenic 40.0%
TGTCTTTCGGTTATCGATAC+GGG + chr2.4:71805422-71805441 None:intergenic 40.0%
TTGATCAGGCCATACACAAA+GGG + chr2.4:71805720-71805739 None:intergenic 40.0%
TTTGATCAGGCCATACACAA+AGG + chr2.4:71805721-71805740 None:intergenic 40.0%
! AAGCTAGTATTTGGAGCTTC+TGG + chr2.4:71805236-71805255 None:intergenic 40.0%
! ACTATGTTTGTTAGTCGAGG+AGG + chr2.4:71805107-71805126 None:intergenic 40.0%
! AGACTCTGAAGAAGGATTTG+TGG - chr2.4:71807505-71807524 MS.gene002383:CDS 40.0%
! CACACTATGTTTGTTAGTCG+AGG + chr2.4:71805110-71805129 None:intergenic 40.0%
! CTATGTTTGTTAGTCGAGGA+GGG + chr2.4:71805106-71805125 None:intergenic 40.0%
! GTCAGATGATGTTGCTTCTT+GGG - chr2.4:71806688-71806707 MS.gene002383:CDS 40.0%
! TTTGGAGCTTCTGGAAATCA+TGG + chr2.4:71805227-71805246 None:intergenic 40.0%
! TTTTCTCAATGTCTTGGAGG+AGG + chr2.4:71806542-71806561 None:intergenic 40.0%
!! ATCATAGTACCTGGTGTCAT+TGG - chr2.4:71805019-71805038 MS.gene002383:CDS 40.0%
!! CCTAGATTTTAATGAGCACG+TGG - chr2.4:71806608-71806627 MS.gene002383:intron 40.0%
!! GGCACTGGTACAAATATAGA+TGG - chr2.4:71805744-71805763 MS.gene002383:CDS 40.0%
!!! ATAGGCACTTTTAAAGCCTG+AGG - chr2.4:71805640-71805659 MS.gene002383:intron 40.0%
AAGTTACCATTGACATGGGG+AGG + chr2.4:71805692-71805711 None:intergenic 45.0%
AGATCGAACCATGAGACATC+CGG - chr2.4:71807013-71807032 MS.gene002383:intron 45.0%
ATATTTCAGCCGATGCACGT+TGG - chr2.4:71806277-71806296 MS.gene002383:intron 45.0%
ATGAAGCGAATTGCTCAAGG+TGG - chr2.4:71807446-71807465 MS.gene002383:CDS 45.0%
CATCCGGATCATGACTCAAT+TGG - chr2.4:71807029-71807048 MS.gene002383:intron 45.0%
CATGAGGATATGTGTGTTGC+AGG - chr2.4:71805942-71805961 MS.gene002383:CDS 45.0%
CTGCAACACACATATCCTCA+TGG + chr2.4:71805944-71805963 None:intergenic 45.0%
CTTCAGAGTCTCCAAACACT+TGG + chr2.4:71807496-71807515 None:intergenic 45.0%
GCTTGCAAATGGGGTTATGA+AGG - chr2.4:71806884-71806903 MS.gene002383:intron 45.0%
GGCGAGATTGAAAGGTTTGA+TGG - chr2.4:71804952-71804971 MS.gene002383:CDS 45.0%
GTCATGAAGCGAATTGCTCA+AGG - chr2.4:71807443-71807462 MS.gene002383:CDS 45.0%
GTCATTGGATGGAGCAAAGA+GGG - chr2.4:71805034-71805053 MS.gene002383:CDS 45.0%
GTTGGATTCACCTCAGACAA+AGG - chr2.4:71806295-71806314 MS.gene002383:CDS 45.0%
TCATGGTTCGATCTTCTACC+AGG + chr2.4:71807007-71807026 None:intergenic 45.0%
TGCTTCTTGGGAACATTGCA+AGG - chr2.4:71806700-71806719 MS.gene002383:CDS 45.0%
TGTCATTGGATGGAGCAAAG+AGG - chr2.4:71805033-71805052 MS.gene002383:CDS 45.0%
TGTGTTTCCACCTTTGTCTG+AGG + chr2.4:71806308-71806327 None:intergenic 45.0%
TTGTTACCTCCCCATGTCAA+TGG - chr2.4:71805683-71805702 MS.gene002383:intron 45.0%
TTTCTTGGATGCAGGGAATC+TGG - chr2.4:71806666-71806685 MS.gene002383:CDS 45.0%
! GGTCAGATGATGTTGCTTCT+TGG - chr2.4:71806687-71806706 MS.gene002383:CDS 45.0%
! GTGTTTGGAGACTCTGAAGA+AGG - chr2.4:71807497-71807516 MS.gene002383:CDS 45.0%
!! TAGTACCTGGTGTCATTGGA+TGG - chr2.4:71805023-71805042 MS.gene002383:CDS 45.0%
!! TTGATGGTGTCTCTTCCACT+TGG - chr2.4:71804968-71804987 MS.gene002383:CDS 45.0%
!! TAAATAAATAAGTATTAAAA+TGG - chr2.4:71807089-71807108 MS.gene002383:intron 5.0%
AAACATAGGGGACTGCCATG+AGG - chr2.4:71805926-71805945 MS.gene002383:CDS 50.0%
GAGGTGAATCCAACGTGCAT+CGG + chr2.4:71806289-71806308 None:intergenic 50.0%
GGATTCACCTCAGACAAAGG+TGG - chr2.4:71806298-71806317 MS.gene002383:CDS 50.0%
GGCCTGATCAAATTAGGCAC+TGG - chr2.4:71805729-71805748 MS.gene002383:intron 50.0%
GTCATGATCCGGATGTCTCA+TGG + chr2.4:71807024-71807043 None:intergenic 50.0%
TGAACCAACCACGGTTGAAC+CGG - chr2.4:71807130-71807149 MS.gene002383:intron 50.0%
TGAACTGCTTCTGATGCCTC+AGG + chr2.4:71805659-71805678 None:intergenic 50.0%
TTGCTCCATCCAATGACACC+AGG + chr2.4:71805031-71805050 None:intergenic 50.0%
TTGTTAGTCGAGGAGGGCTA+GGG + chr2.4:71805100-71805119 None:intergenic 50.0%
TTTGTTAGTCGAGGAGGGCT+AGG + chr2.4:71805101-71805120 None:intergenic 50.0%
!! TGATTGCACCGGTTCAACCG+TGG + chr2.4:71807141-71807160 None:intergenic 55.0%
!! TGCACCGGTTCAACCGTGGT+TGG + chr2.4:71807137-71807156 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr2.4 gene 71804950 71807538 71804950 ID=MS.gene002383
chr2.4 mRNA 71804950 71807538 71804950 ID=MS.gene002383.t1;Parent=MS.gene002383
chr2.4 exon 71807404 71807538 71807404 ID=MS.gene002383.t1.exon1;Parent=MS.gene002383.t1
chr2.4 CDS 71807404 71807538 71807404 ID=cds.MS.gene002383.t1;Parent=MS.gene002383.t1
chr2.4 exon 71806664 71806844 71806664 ID=MS.gene002383.t1.exon2;Parent=MS.gene002383.t1
chr2.4 CDS 71806664 71806844 71806664 ID=cds.MS.gene002383.t1;Parent=MS.gene002383.t1
chr2.4 exon 71806462 71806554 71806462 ID=MS.gene002383.t1.exon3;Parent=MS.gene002383.t1
chr2.4 CDS 71806462 71806554 71806462 ID=cds.MS.gene002383.t1;Parent=MS.gene002383.t1
chr2.4 exon 71806285 71806340 71806285 ID=MS.gene002383.t1.exon4;Parent=MS.gene002383.t1
chr2.4 CDS 71806285 71806340 71806285 ID=cds.MS.gene002383.t1;Parent=MS.gene002383.t1
chr2.4 exon 71806119 71806202 71806119 ID=MS.gene002383.t1.exon5;Parent=MS.gene002383.t1
chr2.4 CDS 71806119 71806202 71806119 ID=cds.MS.gene002383.t1;Parent=MS.gene002383.t1
chr2.4 exon 71805916 71806011 71805916 ID=MS.gene002383.t1.exon6;Parent=MS.gene002383.t1
chr2.4 CDS 71805916 71806011 71805916 ID=cds.MS.gene002383.t1;Parent=MS.gene002383.t1
chr2.4 exon 71805744 71805808 71805744 ID=MS.gene002383.t1.exon7;Parent=MS.gene002383.t1
chr2.4 CDS 71805744 71805808 71805744 ID=cds.MS.gene002383.t1;Parent=MS.gene002383.t1
chr2.4 exon 71805556 71805629 71805556 ID=MS.gene002383.t1.exon8;Parent=MS.gene002383.t1
chr2.4 CDS 71805556 71805629 71805556 ID=cds.MS.gene002383.t1;Parent=MS.gene002383.t1
chr2.4 exon 71804950 71805074 71804950 ID=MS.gene002383.t1.exon9;Parent=MS.gene002383.t1
chr2.4 CDS 71804950 71805074 71804950 ID=cds.MS.gene002383.t1;Parent=MS.gene002383.t1
Gene Sequence

>MS.gene002383

ATGGCGAGATTGAAAGGTTTGATGGTGTCTCTTCCACTTGGATTTGTGTTGTTCTTATGTTCTACTTTCATCATAGTACCTGGTGTCATTGGATGGAGCAAAGAGGGTCATGAGATGACATGTCTAATTGCACAGGTAAAGTTCAAACCCTAGCCCTCCTCGACTAACAAACATAGTGTGTCTGGTTATGTGATAACAAAAAATGATATACACTGTGTTTGGCTTCCCGTTTGCAACACACAAAATCACGTATGCACTTTCCGGTGCTTTTTTGCCATGATTTCCAGAAGCTCCAAATACTAGCTTCTAGCTAACGTGAGTTTTTGCCTTGATTTTCATCAAACTCCGTTTTACAAACGCAGTACTAAAAGACGCTTAACATATTTAATTTTTTACACACTTAGATTTGATTTTGGGAATGGAATCAATTCTAAAATCAAAAGTCAAACATAACTATTTATGGTCAAATCCCGTATCGATAACCGAAAGACAATTCTAAGAAATACAAATGTGAATCAAACATATACATAAGTAATGTATCAAATGATTATCATGCTGGTTATGAATAAGTATAAGGGCTAATTCAAATCACTGTTACTCTTGAAGGGTAATTTTTTTTTGATCAAGGTCATGAAGGGTATTATTGGAATCATAATTATGGTAAAGTAATTGATAATTTCTATATGATTGATAGGCACTTTTAAAGCCTGAGGCATCAGAAGCAGTTCATCACTTGTTACCTCCCCATGTCAATGGTAACTTATCAGCCCTTTGTGTATGGCCTGATCAAATTAGGCACTGGTACAAATATAGATGGACAAGTCCACTTCATTTCATTGACACACCAGATGAAAAATGTGGATTTCAATATTCAAGTAAGCACTATTTGTATATGTAGTTATTTTGGCATGTGTTCTTGTTATTAAATCTCAAAAATAATTATTATTAATGCAATCAATAATTTGTTGCTGTTAACAAACATAGGGGACTGCCATGAGGATATGTGTGTTGCAGGAGCTATCAGAAATTTCACTTCTCAACTTTCTCATTACAAAGAGGGAACATCTGATCGTAGATGTAAGGGACTCATGTCTATCATTGTTTTTCTCCTTTCAGAAATTTTTATACTTATTTTACTTCATGATATTAATTACTGGAGATTTTGTCAAGAAAATAATATTAACCGGCGATATTGCAGATAATATGACCGAGGCATTATTGTTCTTGTCACACTTTATGGGAGATATTCACCAGGTTTGTCTAAAGATTTTTAAAATTTCTTTTATTATATACCACCAGATAAGATTAATTTGATAAAATTACTATTATATTTCAGCCGATGCACGTTGGATTCACCTCAGACAAAGGTGGAAACACAATTGATCTACGCTGGTATCGGCACAAATCTAATCTGCATCATGTAAGCAAAAAATATGTTACTAGCAGACTGGTTTACAAAACAACTTCCTTAAGCGAATTTTAGATTCTTCATGTGACATTTTTGTTTTTCTTGTTTATGCTCATAAGGTGTGGGACAGAGAAATTATTCTCACAGCATTAGCAGATTACTATGACAAAGATGTGACACTCCTCCTCCAAGACATTGAGAAAAACTATACCAATGTAAGTAACAATTTTTAAATTTTTCTGTCACTCTTCCTAGATTTTAATGAGCACGTGGATTTTTTATTGGTTCCAAATAAAATCAACTTATTATTTCTTGGATGCAGGGAATCTGGTCAGATGATGTTGCTTCTTGGGAACATTGCAAGGATATCTCTAGTTGTGTAAATAAGTGAGCACTTTTTCTCTTCCACTTTCAATTTCATCAATCTCTTCTTGCCTCCTAATGTTAATTAATGTTTAGATTTCTTATATTGGATGTGCTTGTTTTGAACTAATCATGTAGTTGGGCTAAAGAGAGCATACAAATAGCTTGCAAATGGGGTTATGAAGGAGTTAAATCTGGAATGACTCTATCAGGTAACTCGAGTCACAAACCATAAATTCAACCACTTATTGATAGGCTTCTCTTTAAAGCAACGTTTTAAAAACCTGGTAGAAGATCGAACCATGAGACATCCGGATCATGACTCAATTGGTTTAATCAATACAACTACGGGTGTACCAGATGACAAATAAATAAATAAGTATTAAAATGGATAAAAATGAAAATATATTGAACCAACCACGGTTGAACCGGTGCAATCATACTGCAATGTAATCATCTAACCGAGATCAAACTAACCGACAAACTAGTCAGTTCTATGTTCAACCGGTTTAATTGGCTAGTTCAGTCTGATTTCTAAAACATTGCTTTAAAGGACACAACTAATAAATTTTTTGTTTTTTTAAGCTAAGCAACAAATTTGTGAAACAGGACCTCCATGATTTTTTGTTTTTTTTAGCATATTCATCATTCATTCCATGTTAAAGGATTTTGTTGCATGTGTGGTTTTTGCAGAAGAATACTTTGACTCAAGGATGCCGTATGTCATGAAGCGAATTGCTCAAGGTGGAATTCGATTAGCCATGATTCTGAACCAAGTGTTTGGAGACTCTGAAGAAGGATTTGTGGCAGCTACTTAA
Protein sequence

>MS.gene002383.t1

MARLKGLMVSLPLGFVLFLCSTFIIVPGVIGWSKEGHEMTCLIAQALLKPEASEAVHHLLPPHVNGNLSALCVWPDQIRHWYKYRWTSPLHFIDTPDEKCGFQYSRDCHEDMCVAGAIRNFTSQLSHYKEGTSDRRYNMTEALLFLSHFMGDIHQPMHVGFTSDKGGNTIDLRWYRHKSNLHHVWDREIILTALADYYDKDVTLLLQDIEKNYTNGIWSDDVASWEHCKDISSCVNNWAKESIQIACKWGYEGVKSGMTLSEEYFDSRMPYVMKRIAQGGIRLAMILNQVFGDSEEGFVAAT