Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene01361.t1 | XP_003593464.1 | 83.4 | 302 | 13 | 2 | 1 | 265 | 1 | 302 | 1.20E-142 | 515.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene01361.t1 | Q9SXA6 | 61.4 | 293 | 66 | 5 | 16 | 265 | 17 | 305 | 3.5e-98 | 359.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene01361.t1 | G7ILF4 | 83.4 | 302 | 13 | 2 | 1 | 265 | 1 | 302 | 8.8e-143 | 515.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene053826 | MS.gene01361 | PPI |
| MS.gene01361 | MS.gene029418 | PPI |
| MS.gene065148 | MS.gene01361 | PPI |
| MS.gene01361 | MS.gene64615 | PPI |
| MS.gene01361 | MS.gene052539 | PPI |
| MS.gene32189 | MS.gene01361 | PPI |
| MS.gene035220 | MS.gene01361 | PPI |
| MS.gene01361 | MS.gene65672 | PPI |
| MS.gene63052 | MS.gene01361 | PPI |
| MS.gene65673 | MS.gene01361 | PPI |
| MS.gene33739 | MS.gene01361 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene01361.t1 | MTR_2g012440 | 83.444 | 302 | 13 | 2 | 1 | 265 | 1 | 302 | 0.0 | 513 |
| MS.gene01361.t1 | MTR_2g012440 | 97.209 | 215 | 6 | 0 | 1 | 215 | 1 | 215 | 2.30e-160 | 444 |
| MS.gene01361.t1 | MTR_4g090610 | 46.125 | 271 | 103 | 5 | 27 | 254 | 15 | 285 | 4.08e-83 | 251 |
| MS.gene01361.t1 | MTR_4g090610 | 46.125 | 271 | 103 | 5 | 27 | 254 | 59 | 329 | 7.66e-83 | 252 |
| MS.gene01361.t1 | MTR_4g090610 | 46.125 | 271 | 103 | 5 | 27 | 254 | 104 | 374 | 1.25e-82 | 253 |
| MS.gene01361.t1 | MTR_4g090610 | 53.125 | 192 | 84 | 2 | 27 | 212 | 15 | 206 | 3.12e-74 | 227 |
| MS.gene01361.t1 | MTR_4g090610 | 53.125 | 192 | 84 | 2 | 27 | 212 | 59 | 250 | 5.06e-74 | 228 |
| MS.gene01361.t1 | MTR_1g110510 | 41.135 | 282 | 119 | 5 | 15 | 254 | 7 | 283 | 5.51e-73 | 225 |
| MS.gene01361.t1 | MTR_5g056140 | 40.426 | 282 | 122 | 5 | 16 | 254 | 8 | 286 | 8.69e-71 | 219 |
| MS.gene01361.t1 | MTR_5g056160 | 40.845 | 284 | 122 | 6 | 16 | 256 | 8 | 288 | 4.27e-68 | 213 |
| MS.gene01361.t1 | MTR_1g110510 | 47.549 | 204 | 97 | 3 | 16 | 214 | 8 | 206 | 7.54e-66 | 205 |
| MS.gene01361.t1 | MTR_5g056560 | 56.410 | 78 | 34 | 0 | 137 | 214 | 35 | 112 | 6.41e-26 | 101 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene01361.t1 | AT1G11190 | 62.191 | 283 | 64 | 4 | 26 | 265 | 23 | 305 | 4.43e-122 | 350 |
| MS.gene01361.t1 | AT4G21585 | 44.891 | 274 | 108 | 4 | 25 | 255 | 18 | 291 | 3.52e-84 | 254 |
| MS.gene01361.t1 | AT4G21585 | 44.891 | 274 | 108 | 4 | 25 | 255 | 18 | 291 | 3.52e-84 | 254 |
| MS.gene01361.t1 | AT1G68290 | 44.108 | 297 | 117 | 7 | 1 | 255 | 1 | 290 | 9.40e-83 | 250 |
| MS.gene01361.t1 | AT4G21585 | 41.000 | 300 | 108 | 5 | 25 | 255 | 18 | 317 | 3.06e-78 | 239 |
| MS.gene01361.t1 | AT4G21585 | 40.728 | 302 | 108 | 5 | 25 | 255 | 18 | 319 | 6.45e-78 | 239 |
| MS.gene01361.t1 | AT4G21590 | 43.494 | 269 | 114 | 5 | 25 | 255 | 18 | 286 | 1.02e-72 | 224 |
| MS.gene01361.t1 | AT4G21590 | 43.494 | 269 | 114 | 5 | 25 | 255 | 18 | 286 | 1.02e-72 | 224 |
| MS.gene01361.t1 | AT4G21600 | 41.241 | 274 | 117 | 6 | 25 | 254 | 14 | 287 | 3.22e-70 | 218 |
| MS.gene01361.t1 | AT4G21585 | 45.333 | 225 | 91 | 3 | 25 | 217 | 18 | 242 | 2.00e-69 | 215 |
| MS.gene01361.t1 | AT4G21585 | 45.333 | 225 | 91 | 3 | 25 | 217 | 18 | 242 | 2.00e-69 | 215 |
Find 48 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTGTTCTTGTCACACTTTA+TGG | 0.191189 | 2.2:-69937877 | MS.gene01361:CDS |
| GTGTATGGCCTGATCAAATT+AGG | 0.272622 | 2.2:-69938317 | MS.gene01361:CDS |
| TTGTTCTTGTCACACTTTAT+GGG | 0.352767 | 2.2:-69937876 | MS.gene01361:CDS |
| ATCATAGTACCTGGTGTCAT+TGG | 0.368732 | 2.2:-69939021 | MS.gene01361:CDS |
| CATGAGGATATGTGTGTTGC+AGG | 0.383138 | 2.2:-69938102 | MS.gene01361:CDS |
| ATGATTCTGAACCAAGTGTT+TGG | 0.402598 | 2.2:-69925301 | MS.gene01361:CDS |
| ACTTATCAGCACTTTGTGTA+TGG | 0.406470 | 2.2:-69938332 | MS.gene01361:CDS |
| TACCAGTGCCTAATTTGATC+AGG | 0.423305 | 2.2:+69938309 | None:intergenic |
| GGCACTGGTACAAATATAGA+TGG | 0.436647 | 2.2:-69938296 | MS.gene01361:CDS |
| GGCGAGATTGAAAGGTTTGA+TGG | 0.451678 | 2.2:-69939088 | MS.gene01361:CDS |
| CTTCAGAGTCTCCAAACACT+TGG | 0.462625 | 2.2:+69925290 | None:intergenic |
| TTGATGGTGTCTCTTCCACT+TGG | 0.484743 | 2.2:-69939072 | MS.gene01361:CDS |
| AAACACTTGGTTCAGAATCA+TGG | 0.494857 | 2.2:+69925303 | None:intergenic |
| TGAACTGCTTCTGATGCCTC+AGG | 0.499507 | 2.2:+69938384 | None:intergenic |
| CAGAAGAATACTTTGACTCA+AGG | 0.500412 | 2.2:-69925372 | MS.gene01361:CDS |
| CAACTTTCTCATTACAAAGA+GGG | 0.507826 | 2.2:-69938057 | MS.gene01361:CDS |
| GTGTTTGGAGACTCTGAAGA+AGG | 0.514236 | 2.2:-69925286 | MS.gene01361:CDS |
| TTGTTACCTCCCCATGTCAA+TGG | 0.519904 | 2.2:-69938357 | MS.gene01361:CDS |
| TTAGATATGGCGAGATTGAA+AGG | 0.527224 | 2.2:-69939096 | None:intergenic |
| GTCATTGGATGGAGCAAAGA+GGG | 0.537487 | 2.2:-69939006 | MS.gene01361:CDS |
| TAGTACCTGGTGTCATTGGA+TGG | 0.539152 | 2.2:-69939017 | MS.gene01361:CDS |
| CAATTGATCTACGCTGGTAT+CGG | 0.540639 | 2.2:-69937718 | MS.gene01361:CDS |
| GCAATTCGCTTCATGACATA+CGG | 0.542919 | 2.2:+69925346 | None:intergenic |
| TCAACTTTCTCATTACAAAG+AGG | 0.566465 | 2.2:-69938058 | MS.gene01361:CDS |
| CTGATAAGTTACCATTGACA+TGG | 0.566583 | 2.2:+69938346 | None:intergenic |
| TCTACTTTCATCATAGTACC+TGG | 0.569857 | 2.2:-69939030 | MS.gene01361:CDS |
| GGCCTGATCAAATTAGGCAC+TGG | 0.574012 | 2.2:-69938311 | MS.gene01361:CDS |
| GAGGTGAATCCAACGTGCAT+CGG | 0.577676 | 2.2:+69937758 | None:intergenic |
| GTTGGATTCACCTCAGACAA+AGG | 0.581712 | 2.2:-69937749 | MS.gene01361:CDS |
| TGTGTTTCCACCTTTGTCTG+AGG | 0.582088 | 2.2:+69937739 | None:intergenic |
| GATGACATGTCTAATTGCAC+AGG | 0.594566 | 2.2:-69938977 | MS.gene01361:intron |
| CTGCAACACACATATCCTCA+TGG | 0.607440 | 2.2:+69938103 | None:intergenic |
| CTTTATGGGAGATATTCACC+AGG | 0.613075 | 2.2:-69937862 | MS.gene01361:intron |
| AAGTTACCATTGACATGGGG+AGG | 0.613267 | 2.2:+69938351 | None:intergenic |
| GAAACACAATTGATCTACGC+TGG | 0.614736 | 2.2:-69937724 | MS.gene01361:CDS |
| GTCATGAAGCGAATTGCTCA+AGG | 0.617583 | 2.2:-69925340 | MS.gene01361:CDS |
| TGACAAGAACAATAATGCCT+CGG | 0.623745 | 2.2:+69937887 | None:intergenic |
| TGATAAGTTACCATTGACAT+GGG | 0.635973 | 2.2:+69938347 | None:intergenic |
| GGTGTGTCAATGAAATGAAG+TGG | 0.644809 | 2.2:+69938267 | None:intergenic |
| TTGCTCCATCCAATGACACC+AGG | 0.646308 | 2.2:+69939012 | None:intergenic |
| AAGAACAACACAAATCCAAG+TGG | 0.649453 | 2.2:+69939057 | None:intergenic |
| TGTCATTGGATGGAGCAAAG+AGG | 0.656727 | 2.2:-69939007 | MS.gene01361:CDS |
| GGATTCACCTCAGACAAAGG+TGG | 0.681668 | 2.2:-69937746 | MS.gene01361:CDS |
| ATGAAGCGAATTGCTCAAGG+TGG | 0.685248 | 2.2:-69925337 | MS.gene01361:CDS |
| ATATTTCAGCCGATGCACGT+TGG | 0.693369 | 2.2:-69937767 | MS.gene01361:intron |
| AAACATAGGGGACTGCCATG+AGG | 0.699367 | 2.2:-69938118 | MS.gene01361:intron |
| TATTGCAGATAATATGACCG+AGG | 0.709381 | 2.2:-69937904 | MS.gene01361:intron |
| GATAAGTTACCATTGACATG+GGG | 0.735979 | 2.2:+69938348 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.2 | gene | 69925267 | 69939112 | 69925267 | ID=MS.gene01361 |
| chr2.2 | mRNA | 69925267 | 69939112 | 69925267 | ID=MS.gene01361.t1;Parent=MS.gene01361 |
| chr2.2 | exon | 69938978 | 69939112 | 69938978 | ID=MS.gene01361.t1.exon1;Parent=MS.gene01361.t1 |
| chr2.2 | CDS | 69938978 | 69939112 | 69938978 | ID=cds.MS.gene01361.t1;Parent=MS.gene01361.t1 |
| chr2.2 | exon | 69938238 | 69938418 | 69938238 | ID=MS.gene01361.t1.exon2;Parent=MS.gene01361.t1 |
| chr2.2 | CDS | 69938238 | 69938418 | 69938238 | ID=cds.MS.gene01361.t1;Parent=MS.gene01361.t1 |
| chr2.2 | exon | 69938040 | 69938132 | 69938040 | ID=MS.gene01361.t1.exon3;Parent=MS.gene01361.t1 |
| chr2.2 | CDS | 69938040 | 69938132 | 69938040 | ID=cds.MS.gene01361.t1;Parent=MS.gene01361.t1 |
| chr2.2 | exon | 69937863 | 69937918 | 69937863 | ID=MS.gene01361.t1.exon4;Parent=MS.gene01361.t1 |
| chr2.2 | CDS | 69937863 | 69937918 | 69937863 | ID=cds.MS.gene01361.t1;Parent=MS.gene01361.t1 |
| chr2.2 | exon | 69937697 | 69937780 | 69937697 | ID=MS.gene01361.t1.exon5;Parent=MS.gene01361.t1 |
| chr2.2 | CDS | 69937697 | 69937780 | 69937697 | ID=cds.MS.gene01361.t1;Parent=MS.gene01361.t1 |
| chr2.2 | exon | 69931886 | 69931981 | 69931886 | ID=MS.gene01361.t1.exon6;Parent=MS.gene01361.t1 |
| chr2.2 | CDS | 69931886 | 69931981 | 69931886 | ID=cds.MS.gene01361.t1;Parent=MS.gene01361.t1 |
| chr2.2 | exon | 69925267 | 69925419 | 69925267 | ID=MS.gene01361.t1.exon7;Parent=MS.gene01361.t1 |
| chr2.2 | CDS | 69925267 | 69925419 | 69925267 | ID=cds.MS.gene01361.t1;Parent=MS.gene01361.t1 |
| Gene Sequence |
| Protein sequence |