Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene029575.t1 | XP_003603744.1 | 90.5 | 273 | 26 | 0 | 13 | 285 | 1 | 273 | 2.30E-139 | 505 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene029575.t1 | O81769 | 75.4 | 272 | 66 | 1 | 13 | 283 | 1 | 272 | 7.1e-121 | 434.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene029575.t1 | G7J4Q4 | 90.5 | 273 | 26 | 0 | 13 | 285 | 1 | 273 | 1.7e-139 | 505.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene029575 | MS.gene83565 | PPI |
| MS.gene029575 | MS.gene067444 | PPI |
| MS.gene029575 | MS.gene85931 | PPI |
| MS.gene009798 | MS.gene029575 | PPI |
| MS.gene029575 | MS.gene86968 | PPI |
| MS.gene029575 | MS.gene56983 | PPI |
| MS.gene50211 | MS.gene029575 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene029575.t1 | MTR_3g113750 | 90.476 | 273 | 26 | 0 | 13 | 285 | 1 | 273 | 0.0 | 518 |
| MS.gene029575.t1 | MTR_1g107520 | 92.121 | 165 | 9 | 1 | 13 | 177 | 1 | 161 | 6.34e-107 | 308 |
| MS.gene029575.t1 | MTR_3g114210 | 68.919 | 148 | 37 | 3 | 43 | 181 | 1 | 148 | 7.07e-58 | 182 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene029575.t1 | AT4G31790 | 74.818 | 274 | 68 | 1 | 13 | 285 | 1 | 274 | 1.77e-159 | 445 |
| MS.gene029575.t1 | AT4G31790 | 74.818 | 274 | 68 | 1 | 13 | 285 | 1 | 274 | 1.77e-159 | 445 |
Find 69 sgRNAs with CRISPR-Local
Find 196 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGCTACAGTTGATTGATTT+TGG | 0.122944 | 1.3:-73618481 | MS.gene029575:CDS |
| TTGCTATGGTTACAGATATT+AGG | 0.197130 | 1.3:-73619372 | MS.gene029575:intron |
| ATGTTATACATAATCGGTTT+AGG | 0.222248 | 1.3:-73621892 | MS.gene029575:CDS |
| CTTCACACACTTTGCTTGTT+AGG | 0.224154 | 1.3:-73621324 | MS.gene029575:intron |
| TGTGTTGATCGTCATGTATC+TGG | 0.257878 | 1.3:+73619036 | None:intergenic |
| TGTTATACATAATCGGTTTA+GGG | 0.275650 | 1.3:-73621891 | MS.gene029575:CDS |
| CATGTTGCTTTCCTTGTTGT+TGG | 0.290249 | 1.3:-73621652 | MS.gene029575:CDS |
| TAAATGCGACAAAGTTTATA+TGG | 0.290999 | 1.3:-73621821 | MS.gene029575:CDS |
| TGCTATGGTTACAGATATTA+GGG | 0.304377 | 1.3:-73619371 | MS.gene029575:intron |
| CTTGTTGTTGGTGACCCTTT+TGG | 0.307530 | 1.3:-73621640 | MS.gene029575:CDS |
| TACATAATCGGTTTAGGGTT+GGG | 0.353222 | 1.3:-73621886 | MS.gene029575:CDS |
| CATGTATCTGGGTGGTTCAT+AGG | 0.357827 | 1.3:+73619048 | None:intergenic |
| GGTTTGCAGCTATATCGTTA+TGG | 0.358551 | 1.3:-73621432 | MS.gene029575:CDS |
| CTGTAGCTGCTTCATTGTTC+CGG | 0.365688 | 1.3:+73618495 | None:intergenic |
| GTTTGCAGCTATATCGTTAT+GGG | 0.367093 | 1.3:-73621431 | MS.gene029575:CDS |
| TTGCATTGCCTAGTCATAAC+AGG | 0.382182 | 1.3:-73618451 | MS.gene029575:CDS |
| TACACTTCTCTTCTCTCCTT+CGG | 0.382807 | 1.3:-73621793 | MS.gene029575:CDS |
| GCTTCTGTTATGAATGCAAT+TGG | 0.383096 | 1.3:-73621462 | MS.gene029575:CDS |
| CACAGCCATTGACCAGCTAT+TGG | 0.391767 | 1.3:-73619017 | MS.gene029575:CDS |
| TTCTCTATCTGCAAGTGTAA+TGG | 0.397647 | 1.3:+73621723 | None:intergenic |
| AATAGCTTGTAAACCTTTGA+GGG | 0.412690 | 1.3:+73621846 | None:intergenic |
| AACCTTTGAGGGTGATATCT+TGG | 0.414105 | 1.3:+73621857 | None:intergenic |
| GAATAGCTTGTAAACCTTTG+AGG | 0.424343 | 1.3:+73621845 | None:intergenic |
| AACAGGCAAGACCCATCCTT+TGG | 0.449566 | 1.3:-73618434 | MS.gene029575:CDS |
| TCCTTTGGAGGAAGAAATGC+TGG | 0.451222 | 1.3:-73618419 | MS.gene029575:CDS |
| TACACTTGCAGATAGAGAAA+TGG | 0.452546 | 1.3:-73621719 | MS.gene029575:CDS |
| TCCTTCGGTCTCTCTTCAAA+CGG | 0.456224 | 1.3:-73621778 | MS.gene029575:CDS |
| ATGAATGCAATTGGGATTTG+TGG | 0.467099 | 1.3:-73621453 | MS.gene029575:CDS |
| CTGAAGATACTGAGTGTGTT+GGG | 0.467169 | 1.3:-73618555 | MS.gene029575:CDS |
| TGCTGGATTTCTACAGATGC+AGG | 0.472871 | 1.3:-73618402 | MS.gene029575:CDS |
| AACATGAGAAAGATGAGCTT+GGG | 0.476125 | 1.3:+73621669 | None:intergenic |
| TAGTAGCATACGTACCCAAA+AGG | 0.476909 | 1.3:+73621625 | None:intergenic |
| CTGAGTGTGTTGGGTTTGCT+CGG | 0.479514 | 1.3:-73618546 | MS.gene029575:CDS |
| TCTCCATGTCTCGGTAAAGA+AGG | 0.483323 | 1.3:+73621392 | None:intergenic |
| TGTGTTGGGTTTGCTCGGAT+TGG | 0.491487 | 1.3:-73618541 | MS.gene029575:CDS |
| GCATTTCTTCCTCCAAAGGA+TGG | 0.492628 | 1.3:+73618422 | None:intergenic |
| ATACATAATCGGTTTAGGGT+TGG | 0.507394 | 1.3:-73621887 | MS.gene029575:CDS |
| CTTCTGTTATGAATGCAATT+GGG | 0.511747 | 1.3:-73621461 | MS.gene029575:CDS |
| TGTTGTTCGAGCAAAGAAGA+TGG | 0.512659 | 1.3:-73621511 | MS.gene029575:CDS |
| CAACATGAGAAAGATGAGCT+TGG | 0.518904 | 1.3:+73621668 | None:intergenic |
| CTTGTGCAATCTCCAATAGC+TGG | 0.526744 | 1.3:+73619005 | None:intergenic |
| CCACGCTGGAATCTTTGTGC+AGG | 0.532208 | 1.3:-73619339 | MS.gene029575:intron |
| GTGTTGATCGTCATGTATCT+GGG | 0.540891 | 1.3:+73619037 | None:intergenic |
| TCCAGCATTTCTTCCTCCAA+AGG | 0.541129 | 1.3:+73618418 | None:intergenic |
| GCACAAGCGCATGAAGAAGC+TGG | 0.545697 | 1.3:-73618989 | MS.gene029575:intron |
| CATTTCTTCCTCCAAAGGAT+GGG | 0.556386 | 1.3:+73618423 | None:intergenic |
| AGTAGCATACGTACCCAAAA+GGG | 0.556867 | 1.3:+73621626 | None:intergenic |
| GTTGTTCGAGCAAAGAAGAT+GGG | 0.566000 | 1.3:-73621510 | MS.gene029575:CDS |
| AGGCAAGACCCATCCTTTGG+AGG | 0.566323 | 1.3:-73618431 | MS.gene029575:CDS |
| AATCTCCAATAGCTGGTCAA+TGG | 0.569611 | 1.3:+73619012 | None:intergenic |
| CTCCATGTCTCGGTAAAGAA+GGG | 0.572832 | 1.3:+73621393 | None:intergenic |
| GTTGATATGACTAGTCAAGA+AGG | 0.574134 | 1.3:-73621934 | None:intergenic |
| GAAGTTCAGAAGGTAGTAGC+CGG | 0.574536 | 1.3:-73618514 | MS.gene029575:CDS |
| TACCCTTCTTTACCGAGACA+TGG | 0.575922 | 1.3:-73621395 | MS.gene029575:CDS |
| TCTGAAGATACTGAGTGTGT+TGG | 0.579919 | 1.3:-73618556 | MS.gene029575:CDS |
| ACACTCAGTATCTTCAGAGT+AGG | 0.583085 | 1.3:+73618561 | None:intergenic |
| GGTTACAGATATTAGGGTGA+AGG | 0.584730 | 1.3:-73619365 | MS.gene029575:intron |
| GCCGTTTGAAGAGAGACCGA+AGG | 0.585888 | 1.3:+73621777 | None:intergenic |
| GGGTCTTGCCTGTTATGACT+AGG | 0.587259 | 1.3:+73618443 | None:intergenic |
| GCTATCAGGTCTCCATGTCT+CGG | 0.598618 | 1.3:+73621383 | None:intergenic |
| TAGGGTGAAGGAGCCCACGC+TGG | 0.600425 | 1.3:-73619353 | MS.gene029575:CDS |
| GACCAAGATATCACCCTCAA+AGG | 0.601432 | 1.3:-73621859 | MS.gene029575:CDS |
| CTGCACAAAGATTCCAGCGT+GGG | 0.607705 | 1.3:+73619340 | None:intergenic |
| CAAAAGGGTCACCAACAACA+AGG | 0.612707 | 1.3:+73621641 | None:intergenic |
| GATTGGAAGTGAAGTTCAGA+AGG | 0.620713 | 1.3:-73618524 | MS.gene029575:CDS |
| TTTGCAGCTATATCGTTATG+GGG | 0.661053 | 1.3:-73621430 | MS.gene029575:CDS |
| GTTATGACTAGGCAATGCAA+AGG | 0.678397 | 1.3:+73618454 | None:intergenic |
| TTGATCGTCATGTATCTGGG+TGG | 0.755594 | 1.3:+73619040 | None:intergenic |
| CCTGCACAAAGATTCCAGCG+TGG | 0.765961 | 1.3:+73619339 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAGAAAAAAAAAGA+AGG | - | chr1.3:73621605-73621624 | MS.gene029575:intron | 10.0% |
| !! | AAAAAAAGAAAAAAAAAGAA+GGG | - | chr1.3:73621606-73621625 | MS.gene029575:intron | 10.0% |
| !! | TTATTATTAAAATGTGATTT+AGG | - | chr1.3:73620603-73620622 | MS.gene029575:intron | 10.0% |
| !!! | AAACTTTTTTTGTAAATATT+TGG | - | chr1.3:73620567-73620586 | MS.gene029575:intron | 10.0% |
| !! | AAAATAATAATATGTAGGTA+TGG | + | chr1.3:73619666-73619685 | None:intergenic | 15.0% |
| !! | AGAAAAATGTTATACATAAT+CGG | - | chr1.3:73618426-73618445 | MS.gene029575:CDS | 15.0% |
| !! | ATATATTAAATCGATAGATA+AGG | + | chr1.3:73620014-73620033 | None:intergenic | 15.0% |
| !! | ATGGTTAAAAATTCAATTAA+TGG | + | chr1.3:73619720-73619739 | None:intergenic | 15.0% |
| !! | GTCAAAAAATAATAATATGT+AGG | + | chr1.3:73619671-73619690 | None:intergenic | 15.0% |
| !! | TATTAATTAATTAAGGACTA+AGG | - | chr1.3:73619358-73619377 | MS.gene029575:CDS | 15.0% |
| !! | TTGTGCATATTAATTAATTA+AGG | - | chr1.3:73619351-73619370 | MS.gene029575:CDS | 15.0% |
| !!! | ATTTTAACAAATTGCTATAA+CGG | + | chr1.3:73619215-73619234 | None:intergenic | 15.0% |
| !!! | ATTTTTAAAGCTTCAAAATT+GGG | - | chr1.3:73620709-73620728 | MS.gene029575:intron | 15.0% |
| !!! | TACATATTTGAAATTTGATA+TGG | - | chr1.3:73621477-73621496 | MS.gene029575:CDS | 15.0% |
| !!! | TATTATTTTTTGACAAATCA+TGG | - | chr1.3:73619677-73619696 | MS.gene029575:intron | 15.0% |
| !!! | TTTTCTTTTTTTTTTTCTAG+AGG | + | chr1.3:73621598-73621617 | None:intergenic | 15.0% |
| !! | AATAATTAAAATGTTGAAGC+AGG | + | chr1.3:73618735-73618754 | None:intergenic | 20.0% |
| !! | AATATTGTAAGAAAACACAT+TGG | + | chr1.3:73621634-73621653 | None:intergenic | 20.0% |
| !! | ACATAATCAACAGAAAATAA+AGG | + | chr1.3:73621028-73621047 | None:intergenic | 20.0% |
| !! | ATAATTAAAATGTTGAAGCA+GGG | + | chr1.3:73618734-73618753 | None:intergenic | 20.0% |
| !! | ATAGAAGAAATACAATAAAG+AGG | - | chr1.3:73619589-73619608 | MS.gene029575:intron | 20.0% |
| !! | ATAGATAAGGTTAATAAGTA+AGG | + | chr1.3:73620001-73620020 | None:intergenic | 20.0% |
| !! | ATATAATTTACACTTTGCTA+TGG | - | chr1.3:73620938-73620957 | MS.gene029575:intron | 20.0% |
| !! | CACAAACTTTATATGTATTA+CGG | - | chr1.3:73619564-73619583 | MS.gene029575:intron | 20.0% |
| !! | GCAATAATAACTAAGATATA+TGG | + | chr1.3:73619942-73619961 | None:intergenic | 20.0% |
| !! | GTTAAAATTCTACAATGATA+TGG | - | chr1.3:73619227-73619246 | MS.gene029575:intron | 20.0% |
| !! | TTTAATAAGACAAGTGAATA+TGG | + | chr1.3:73619624-73619643 | None:intergenic | 20.0% |
| !!! | ATACTATATCCATTTTTTCA+AGG | - | chr1.3:73620540-73620559 | MS.gene029575:intron | 20.0% |
| !!! | ATTCAACAAAATCGAATTTT+CGG | - | chr1.3:73618976-73618995 | MS.gene029575:intron | 20.0% |
| !!! | CGAATAACATCAATTTTATA+AGG | + | chr1.3:73620382-73620401 | None:intergenic | 20.0% |
| !!! | GATTTTTAAAGCTTCAAAAT+TGG | - | chr1.3:73620708-73620727 | MS.gene029575:intron | 20.0% |
| !!! | TAATGGACAGAATAATAATA+TGG | + | chr1.3:73619703-73619722 | None:intergenic | 20.0% |
| !!! | TATTTTTTGGTTCATTTAAG+AGG | - | chr1.3:73621245-73621264 | MS.gene029575:intron | 20.0% |
| !!! | TCAATTATCACTTTAAAATG+AGG | + | chr1.3:73620337-73620356 | None:intergenic | 20.0% |
| ! | AAATCTTATCGATCTTGTAT+CGG | + | chr1.3:73619830-73619849 | None:intergenic | 25.0% |
| ! | AACTGAAAATGTGCTTATTA+TGG | + | chr1.3:73621529-73621548 | None:intergenic | 25.0% |
| ! | AAGAAAATATGCATTGAATC+TGG | - | chr1.3:73619086-73619105 | MS.gene029575:intron | 25.0% |
| ! | ATAAGTCAGTTGTATTAGAA+AGG | + | chr1.3:73619978-73619997 | None:intergenic | 25.0% |
| ! | ATTGTGAGAATAAACATTTC+TGG | - | chr1.3:73619434-73619453 | MS.gene029575:intron | 25.0% |
| ! | TAAATGCGACAAAGTTTATA+TGG | - | chr1.3:73618503-73618522 | MS.gene029575:CDS | 25.0% |
| ! | TATTCGTGTATGTCTTTAAT+TGG | - | chr1.3:73620396-73620415 | MS.gene029575:intron | 25.0% |
| ! | TCCAATCTAGAAAAACTATA+CGG | - | chr1.3:73618573-73618592 | MS.gene029575:intron | 25.0% |
| ! | TTGAGATTAAGAATAGCATA+AGG | + | chr1.3:73619034-73619053 | None:intergenic | 25.0% |
| !! | AATTTTCTAAGTGATTGTAC+TGG | - | chr1.3:73620829-73620848 | MS.gene029575:intron | 25.0% |
| !! | AGCGATATTTTCTTATTATC+CGG | - | chr1.3:73621173-73621192 | MS.gene029575:intron | 25.0% |
| !! | AGTTTTTCTCAACAAAGAAA+AGG | + | chr1.3:73620917-73620936 | None:intergenic | 25.0% |
| !! | ATGTTATACATAATCGGTTT+AGG | - | chr1.3:73618432-73618451 | MS.gene029575:CDS | 25.0% |
| !! | TGTTATACATAATCGGTTTA+GGG | - | chr1.3:73618433-73618452 | MS.gene029575:CDS | 25.0% |
| !! | TGTTGATTATGTAGTTTCTT+TGG | - | chr1.3:73621036-73621055 | MS.gene029575:intron | 25.0% |
| !!! | AAGTTTCTCCTTTTTTTCAT+TGG | + | chr1.3:73619387-73619406 | None:intergenic | 25.0% |
| !!! | CTTATTTTTCTTATGCTACA+TGG | - | chr1.3:73620298-73620317 | MS.gene029575:intron | 25.0% |
| !!! | TTATTTTTGTTTTCTTCGCA+GGG | - | chr1.3:73618771-73618790 | MS.gene029575:intron | 25.0% |
| AGTATATTGAACAGCATTGT+AGG | + | chr1.3:73619307-73619326 | None:intergenic | 30.0% | |
| ATACTTCTCAGAACATAAGA+AGG | + | chr1.3:73621143-73621162 | None:intergenic | 30.0% | |
| CTTCTGTTATGAATGCAATT+GGG | - | chr1.3:73618863-73618882 | MS.gene029575:intron | 30.0% | |
| GAAGGGAATAAATTAAGTGT+CGG | + | chr1.3:73619193-73619212 | None:intergenic | 30.0% | |
| TAAGGCTTCCAATGAAAAAA+AGG | - | chr1.3:73619376-73619395 | MS.gene029575:intron | 30.0% | |
| TGATTATGTAGTTTCTTTGG+TGG | - | chr1.3:73621039-73621058 | MS.gene029575:intron | 30.0% | |
| TGCTATGGTTACAGATATTA+GGG | - | chr1.3:73620953-73620972 | MS.gene029575:intron | 30.0% | |
| TTGAACATTTACATCACTCT+AGG | - | chr1.3:73621367-73621386 | MS.gene029575:CDS | 30.0% | |
| TTGCTATGGTTACAGATATT+AGG | - | chr1.3:73620952-73620971 | MS.gene029575:intron | 30.0% | |
| ! | AACAAATTGCTATAACGGAA+GGG | + | chr1.3:73619210-73619229 | None:intergenic | 30.0% |
| ! | AATAGCTTGTAAACCTTTGA+GGG | + | chr1.3:73618481-73618500 | None:intergenic | 30.0% |
| ! | ACCGTATAGTTTTTCTAGAT+TGG | + | chr1.3:73618577-73618596 | None:intergenic | 30.0% |
| ! | AGTTTTCAGCCTTGAAAAAA+TGG | + | chr1.3:73620552-73620571 | None:intergenic | 30.0% |
| ! | ATAGTTTTTCTAGATTGGAG+AGG | + | chr1.3:73618572-73618591 | None:intergenic | 30.0% |
| ! | ATCTTTTGATAGAAGCTATC+AGG | + | chr1.3:73618958-73618977 | None:intergenic | 30.0% |
| ! | GTTTGAAACTTCAAAGAGTA+TGG | + | chr1.3:73619791-73619810 | None:intergenic | 30.0% |
| ! | GTTTTTCTTTCATTTGCACA+GGG | + | chr1.3:73620467-73620486 | None:intergenic | 30.0% |
| ! | TAACAAATTGCTATAACGGA+AGG | + | chr1.3:73619211-73619230 | None:intergenic | 30.0% |
| ! | TGTCTTTAATTGGTTCAGTT+TGG | - | chr1.3:73620406-73620425 | MS.gene029575:intron | 30.0% |
| ! | TTTAAGACAAAGGCAAAATC+AGG | + | chr1.3:73619765-73619784 | None:intergenic | 30.0% |
| !! | AACAGATATTTTGAGCAAAG+AGG | + | chr1.3:73619412-73619431 | None:intergenic | 30.0% |
| !! | ACTCTTTGAAGTTTCAAACA+TGG | - | chr1.3:73619792-73619811 | MS.gene029575:intron | 30.0% |
| !! | GTTAAGTTGTTTTCCATTCA+TGG | - | chr1.3:73620042-73620061 | MS.gene029575:intron | 30.0% |
| !! | TTATGTTCTGAGAAGTATCA+TGG | - | chr1.3:73621145-73621164 | MS.gene029575:intron | 30.0% |
| !! | TTCTTTAGAAAGGGTACTAA+CGG | - | chr1.3:73619270-73619289 | MS.gene029575:intron | 30.0% |
| !!! | CTTATTTTTGTTTTCTTCGC+AGG | - | chr1.3:73618770-73618789 | MS.gene029575:intron | 30.0% |
| AAAATCAGGAAGGTAGAGAA+AGG | + | chr1.3:73619751-73619770 | None:intergenic | 35.0% | |
| AAATCAGGAAGGTAGAGAAA+GGG | + | chr1.3:73619750-73619769 | None:intergenic | 35.0% | |
| AACATGAGAAAGATGAGCTT+GGG | + | chr1.3:73618658-73618677 | None:intergenic | 35.0% | |
| ACAATGATATGGCCTATAGA+GGG | - | chr1.3:73619238-73619257 | MS.gene029575:intron | 35.0% | |
| AGAAAAACCGTTGAGCTTTA+TGG | - | chr1.3:73620479-73620498 | MS.gene029575:intron | 35.0% | |
| ATGAATGCAATTGGGATTTG+TGG | - | chr1.3:73618871-73618890 | MS.gene029575:intron | 35.0% | |
| CATTGAGTCATTGACAAAAC+CGG | + | chr1.3:73621195-73621214 | None:intergenic | 35.0% | |
| CTCCATGTTTATCAGATAGA+TGG | - | chr1.3:73619465-73619484 | MS.gene029575:intron | 35.0% | |
| GCTTCTGTTATGAATGCAAT+TGG | - | chr1.3:73618862-73618881 | MS.gene029575:intron | 35.0% | |
| GTCAGTTGTATTAGAAAGGA+AGG | + | chr1.3:73619974-73619993 | None:intergenic | 35.0% | |
| GTCCATCTATCTGATAAACA+TGG | + | chr1.3:73619470-73619489 | None:intergenic | 35.0% | |
| GTTGTATTAGAAAGGAAGGA+AGG | + | chr1.3:73619970-73619989 | None:intergenic | 35.0% | |
| GTTTGCAGCTATATCGTTAT+GGG | - | chr1.3:73618893-73618912 | MS.gene029575:intron | 35.0% | |
| TACAATGATATGGCCTATAG+AGG | - | chr1.3:73619237-73619256 | MS.gene029575:intron | 35.0% | |
| TACACTTGCAGATAGAGAAA+TGG | - | chr1.3:73618605-73618624 | MS.gene029575:intron | 35.0% | |
| TATTAGAAAGGAAGGAAGGA+AGG | + | chr1.3:73619966-73619985 | None:intergenic | 35.0% | |
| TCATACACTTACTCCATGAA+TGG | + | chr1.3:73620058-73620077 | None:intergenic | 35.0% | |
| TGGTAAATTTCTGACAGACA+AGG | + | chr1.3:73621509-73621528 | None:intergenic | 35.0% | |
| TGTTTATCAGATAGATGGAC+AGG | - | chr1.3:73619470-73619489 | MS.gene029575:intron | 35.0% | |
| TTCTCTATCTGCAAGTGTAA+TGG | + | chr1.3:73618604-73618623 | None:intergenic | 35.0% | |
| TTTGCAGCTATATCGTTATG+GGG | - | chr1.3:73618894-73618913 | MS.gene029575:intron | 35.0% | |
| ! | ATACATAATCGGTTTAGGGT+TGG | - | chr1.3:73618437-73618456 | MS.gene029575:CDS | 35.0% |
| ! | CTTTGGTGGTCATTAAGTAT+GGG | - | chr1.3:73621053-73621072 | MS.gene029575:intron | 35.0% |
| ! | GAATAGCTTGTAAACCTTTG+AGG | + | chr1.3:73618482-73618501 | None:intergenic | 35.0% |
| ! | GGTTTTTCTTTCATTTGCAC+AGG | + | chr1.3:73620468-73620487 | None:intergenic | 35.0% |
| ! | TACATAATCGGTTTAGGGTT+GGG | - | chr1.3:73618438-73618457 | MS.gene029575:CDS | 35.0% |
| ! | TCTTTGGTGGTCATTAAGTA+TGG | - | chr1.3:73621052-73621071 | MS.gene029575:intron | 35.0% |
| ! | TTTTGAGCATGCAAGAAGTT+TGG | + | chr1.3:73620224-73620243 | None:intergenic | 35.0% |
| !! | ACGAGTATTGTGTTTTGAGT+TGG | + | chr1.3:73620773-73620792 | None:intergenic | 35.0% |
| !! | AGTTAGATGAGAGCATTAGA+GGG | - | chr1.3:73620855-73620874 | MS.gene029575:intron | 35.0% |
| !! | CAGCTACAGTTGATTGATTT+TGG | - | chr1.3:73621843-73621862 | MS.gene029575:CDS | 35.0% |
| !! | CTAGGCATGAATTTCAAGTT+TGG | - | chr1.3:73621385-73621404 | MS.gene029575:CDS | 35.0% |
| !! | TGTCGGTGTTGTTAAATAGT+GGG | + | chr1.3:73619176-73619195 | None:intergenic | 35.0% |
| !!! | AGTATGGCGTTTTAAGACAA+AGG | + | chr1.3:73619775-73619794 | None:intergenic | 35.0% |
| !!! | GTTTTTTTGTGTGCAGGAAA+TGG | - | chr1.3:73621415-73621434 | MS.gene029575:CDS | 35.0% |
| !!! | TTATGCGTTTTTTTGTGTGC+AGG | - | chr1.3:73621409-73621428 | MS.gene029575:CDS | 35.0% |
| AATCTCCAATAGCTGGTCAA+TGG | + | chr1.3:73621315-73621334 | None:intergenic | 40.0% | |
| ACACTCAGTATCTTCAGAGT+AGG | + | chr1.3:73621766-73621785 | None:intergenic | 40.0% | |
| ACGTGTGATCAAGTATCACT+TGG | - | chr1.3:73619887-73619906 | MS.gene029575:intron | 40.0% | |
| AGACAAAGGCAAAATCAGGA+AGG | + | chr1.3:73619761-73619780 | None:intergenic | 40.0% | |
| AGTAGCATACGTACCCAAAA+GGG | + | chr1.3:73618701-73618720 | None:intergenic | 40.0% | |
| CAACATGAGAAAGATGAGCT+TGG | + | chr1.3:73618659-73618678 | None:intergenic | 40.0% | |
| CAAGTCACCATAAAGCTCAA+CGG | + | chr1.3:73620489-73620508 | None:intergenic | 40.0% | |
| CAATGATATGGCCTATAGAG+GGG | - | chr1.3:73619239-73619258 | MS.gene029575:intron | 40.0% | |
| CATTTCTTCCTCCAAAGGAT+GGG | + | chr1.3:73621904-73621923 | None:intergenic | 40.0% | |
| CTGAAGATACTGAGTGTGTT+GGG | - | chr1.3:73621769-73621788 | MS.gene029575:CDS | 40.0% | |
| CTTCACACACTTTGCTTGTT+AGG | - | chr1.3:73619000-73619019 | MS.gene029575:CDS | 40.0% | |
| CTTGATCACACGTTAACTGA+AGG | + | chr1.3:73619880-73619899 | None:intergenic | 40.0% | |
| GATTGGAAGTGAAGTTCAGA+AGG | - | chr1.3:73621800-73621819 | MS.gene029575:CDS | 40.0% | |
| GGTTACAGATATTAGGGTGA+AGG | - | chr1.3:73620959-73620978 | MS.gene029575:intron | 40.0% | |
| GGTTTGCAGCTATATCGTTA+TGG | - | chr1.3:73618892-73618911 | MS.gene029575:intron | 40.0% | |
| GTTATGACTAGGCAATGCAA+AGG | + | chr1.3:73621873-73621892 | None:intergenic | 40.0% | |
| GTTGTTCGAGCAAAGAAGAT+GGG | - | chr1.3:73618814-73618833 | MS.gene029575:intron | 40.0% | |
| TACACTTCTCTTCTCTCCTT+CGG | - | chr1.3:73618531-73618550 | MS.gene029575:CDS | 40.0% | |
| TAGTAGCATACGTACCCAAA+AGG | + | chr1.3:73618702-73618721 | None:intergenic | 40.0% | |
| TCTGAAGATACTGAGTGTGT+TGG | - | chr1.3:73621768-73621787 | MS.gene029575:CDS | 40.0% | |
| TGTTGTTCGAGCAAAGAAGA+TGG | - | chr1.3:73618813-73618832 | MS.gene029575:intron | 40.0% | |
| TTGCATTGCCTAGTCATAAC+AGG | - | chr1.3:73621873-73621892 | MS.gene029575:CDS | 40.0% | |
| ! | AACCTTTGAGGGTGATATCT+TGG | + | chr1.3:73618470-73618489 | None:intergenic | 40.0% |
| ! | ATCTTGTATCGGCAAACAAG+TGG | + | chr1.3:73619819-73619838 | None:intergenic | 40.0% |
| ! | GCATCGTGGTTCTTTAGAAA+GGG | - | chr1.3:73619261-73619280 | MS.gene029575:intron | 40.0% |
| ! | GTGTTGATCGTCATGTATCT+GGG | + | chr1.3:73621290-73621309 | None:intergenic | 40.0% |
| ! | TGTGTTGATCGTCATGTATC+TGG | + | chr1.3:73621291-73621310 | None:intergenic | 40.0% |
| !! | CATGTTGCTTTCCTTGTTGT+TGG | - | chr1.3:73618672-73618691 | MS.gene029575:intron | 40.0% |
| !! | GAGTTAGATGAGAGCATTAG+AGG | - | chr1.3:73620854-73620873 | MS.gene029575:intron | 40.0% |
| !! | GTGTCGGTGTTGTTAAATAG+TGG | + | chr1.3:73619177-73619196 | None:intergenic | 40.0% |
| !! | GTTAGATGAGAGCATTAGAG+GGG | - | chr1.3:73620856-73620875 | MS.gene029575:intron | 40.0% |
| !! | TGACTTGTTTGTTTGCATGG+TGG | - | chr1.3:73620502-73620521 | MS.gene029575:intron | 40.0% |
| !! | TGGTGACTTGTTTGTTTGCA+TGG | - | chr1.3:73620499-73620518 | MS.gene029575:intron | 40.0% |
| !! | TTGAGTTGGTCAACACAAAC+AGG | + | chr1.3:73620759-73620778 | None:intergenic | 40.0% |
| !!! | TTGTTGTTGGTGACCCTTTT+GGG | - | chr1.3:73618685-73618704 | MS.gene029575:intron | 40.0% |
| CAAAAGGGTCACCAACAACA+AGG | + | chr1.3:73618686-73618705 | None:intergenic | 45.0% | |
| CATGTATCTGGGTGGTTCAT+AGG | + | chr1.3:73621279-73621298 | None:intergenic | 45.0% | |
| CATTCAGTGCAAACCACGAA+AGG | - | chr1.3:73620184-73620203 | MS.gene029575:intron | 45.0% | |
| CTCCATGTCTCGGTAAAGAA+GGG | + | chr1.3:73618934-73618953 | None:intergenic | 45.0% | |
| CTGTAGCTGCTTCATTGTTC+CGG | + | chr1.3:73621832-73621851 | None:intergenic | 45.0% | |
| CTTGTGCAATCTCCAATAGC+TGG | + | chr1.3:73621322-73621341 | None:intergenic | 45.0% | |
| GAAGTTCAGAAGGTAGTAGC+CGG | - | chr1.3:73621810-73621829 | MS.gene029575:CDS | 45.0% | |
| GACCAAGATATCACCCTCAA+AGG | - | chr1.3:73618465-73618484 | MS.gene029575:CDS | 45.0% | |
| GCATTTCTTCCTCCAAAGGA+TGG | + | chr1.3:73621905-73621924 | None:intergenic | 45.0% | |
| GTAGAGAAAGGGATCATGCA+TGG | + | chr1.3:73619739-73619758 | None:intergenic | 45.0% | |
| TACCCTTCTTTACCGAGACA+TGG | - | chr1.3:73618929-73618948 | MS.gene029575:intron | 45.0% | |
| TATCTTCAGAGTAGGCTGCA+AGG | + | chr1.3:73621758-73621777 | None:intergenic | 45.0% | |
| TCCAGCATTTCTTCCTCCAA+AGG | + | chr1.3:73621909-73621928 | None:intergenic | 45.0% | |
| TCCTTCGGTCTCTCTTCAAA+CGG | - | chr1.3:73618546-73618565 | MS.gene029575:CDS | 45.0% | |
| TCTCCATGTCTCGGTAAAGA+AGG | + | chr1.3:73618935-73618954 | None:intergenic | 45.0% | |
| TGCTGGATTTCTACAGATGC+AGG | - | chr1.3:73621922-73621941 | MS.gene029575:CDS | 45.0% | |
| TTGATCGTCATGTATCTGGG+TGG | + | chr1.3:73621287-73621306 | None:intergenic | 45.0% | |
| ! | ATTTTCTCCTCAGCCTTTCG+TGG | + | chr1.3:73620200-73620219 | None:intergenic | 45.0% |
| ! | CGTGGTTTGCACTGAATGAA+AGG | + | chr1.3:73620182-73620201 | None:intergenic | 45.0% |
| ! | GGCATCGTGGTTCTTTAGAA+AGG | - | chr1.3:73619260-73619279 | MS.gene029575:intron | 45.0% |
| ! | GTATGGGTTGTGTGTTTCTC+TGG | - | chr1.3:73621069-73621088 | MS.gene029575:intron | 45.0% |
| ! | TCCTTTGGAGGAAGAAATGC+TGG | - | chr1.3:73621905-73621924 | MS.gene029575:CDS | 45.0% |
| !!! | CTTGTTGTTGGTGACCCTTT+TGG | - | chr1.3:73618684-73618703 | MS.gene029575:intron | 45.0% |
| !!! | GCACATTGGTTTTCTGGGAA+GGG | - | chr1.3:73620878-73620897 | MS.gene029575:intron | 45.0% |
| !!! | TTTTCTGGGAAGGGTACTGA+AGG | - | chr1.3:73620887-73620906 | MS.gene029575:intron | 45.0% |
| !!! | TTTTATTTATCTTTATTTTT+TGG | - | chr1.3:73621232-73621251 | MS.gene029575:intron | 5.0% |
| AACAGGCAAGACCCATCCTT+TGG | - | chr1.3:73621890-73621909 | MS.gene029575:CDS | 50.0% | |
| CACAGCCATTGACCAGCTAT+TGG | - | chr1.3:73621307-73621326 | MS.gene029575:intron | 50.0% | |
| CTGCACAAAGATTCCAGCGT+GGG | + | chr1.3:73620987-73621006 | None:intergenic | 50.0% | |
| GCTATCAGGTCTCCATGTCT+CGG | + | chr1.3:73618944-73618963 | None:intergenic | 50.0% | |
| GCTGGAATCTTTGTGCAGGT+TGG | - | chr1.3:73620989-73621008 | MS.gene029575:intron | 50.0% | |
| GGGTCTTGCCTGTTATGACT+AGG | + | chr1.3:73621884-73621903 | None:intergenic | 50.0% | |
| ! | AGAGCATTAGAGGGGCACAT+TGG | - | chr1.3:73620864-73620883 | MS.gene029575:intron | 50.0% |
| ! | CTGAGTGTGTTGGGTTTGCT+CGG | - | chr1.3:73621778-73621797 | MS.gene029575:CDS | 50.0% |
| ! | TGTGTTGGGTTTGCTCGGAT+TGG | - | chr1.3:73621783-73621802 | MS.gene029575:CDS | 50.0% |
| !!! | AGAGGGGCACATTGGTTTTC+TGG | - | chr1.3:73620872-73620891 | MS.gene029575:intron | 50.0% |
| !!! | GAGGGGCACATTGGTTTTCT+GGG | - | chr1.3:73620873-73620892 | MS.gene029575:intron | 50.0% |
| !!! | GGCACATTGGTTTTCTGGGA+AGG | - | chr1.3:73620877-73620896 | MS.gene029575:intron | 50.0% |
| AGGCAAGACCCATCCTTTGG+AGG | - | chr1.3:73621893-73621912 | MS.gene029575:CDS | 55.0% | |
| CCACGCTGGAATCTTTGTGC+AGG | - | chr1.3:73620985-73621004 | MS.gene029575:intron | 55.0% | |
| CCTGCACAAAGATTCCAGCG+TGG | + | chr1.3:73620988-73621007 | None:intergenic | 55.0% | |
| GAACCACGATGCCCCTCTAT+AGG | + | chr1.3:73619253-73619272 | None:intergenic | 55.0% | |
| GCACAAGCGCATGAAGAAGC+TGG | - | chr1.3:73621335-73621354 | MS.gene029575:CDS | 55.0% | |
| GCCGTTTGAAGAGAGACCGA+AGG | + | chr1.3:73618550-73618569 | None:intergenic | 55.0% | |
| GTGCAAACCACGAAAGGCTG+AGG | - | chr1.3:73620190-73620209 | MS.gene029575:intron | 55.0% | |
| !! | TGGCCTATAGAGGGGCATCG+TGG | - | chr1.3:73619247-73619266 | MS.gene029575:intron | 60.0% |
| TAGGGTGAAGGAGCCCACGC+TGG | - | chr1.3:73620971-73620990 | MS.gene029575:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 73618396 | 73621950 | 73618396 | ID=MS.gene029575 |
| chr1.3 | mRNA | 73618396 | 73621950 | 73618396 | ID=MS.gene029575.t1;Parent=MS.gene029575 |
| chr1.3 | exon | 73621640 | 73621950 | 73621640 | ID=MS.gene029575.t1.exon1;Parent=MS.gene029575.t1 |
| chr1.3 | CDS | 73621640 | 73621950 | 73621640 | ID=cds.MS.gene029575.t1;Parent=MS.gene029575.t1 |
| chr1.3 | exon | 73621325 | 73621554 | 73621325 | ID=MS.gene029575.t1.exon2;Parent=MS.gene029575.t1 |
| chr1.3 | CDS | 73621325 | 73621554 | 73621325 | ID=cds.MS.gene029575.t1;Parent=MS.gene029575.t1 |
| chr1.3 | exon | 73619340 | 73619379 | 73619340 | ID=MS.gene029575.t1.exon3;Parent=MS.gene029575.t1 |
| chr1.3 | CDS | 73619340 | 73619379 | 73619340 | ID=cds.MS.gene029575.t1;Parent=MS.gene029575.t1 |
| chr1.3 | exon | 73618990 | 73619081 | 73618990 | ID=MS.gene029575.t1.exon4;Parent=MS.gene029575.t1 |
| chr1.3 | CDS | 73618990 | 73619081 | 73618990 | ID=cds.MS.gene029575.t1;Parent=MS.gene029575.t1 |
| chr1.3 | exon | 73618396 | 73618583 | 73618396 | ID=MS.gene029575.t1.exon5;Parent=MS.gene029575.t1 |
| chr1.3 | CDS | 73618396 | 73618583 | 73618396 | ID=cds.MS.gene029575.t1;Parent=MS.gene029575.t1 |
| Gene Sequence |
| Protein sequence |
