Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene031660.t1 | XP_024638524.1 | 79.3 | 305 | 59 | 2 | 1 | 303 | 1 | 303 | 5.90E-101 | 377.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene031660.t1 | Q9UTE6 | 50.0 | 192 | 94 | 1 | 1 | 192 | 1 | 190 | 5.5e-47 | 189.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene031660.t1 | G7JUY3 | 73.1 | 305 | 58 | 3 | 1 | 303 | 1 | 283 | 1.7e-86 | 328.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene018553 | MS.gene031660 | PPI |
| MS.gene45646 | MS.gene031660 | PPI |
| MS.gene07704 | MS.gene031660 | PPI |
| MS.gene52150 | MS.gene031660 | PPI |
| MS.gene058018 | MS.gene031660 | PPI |
| MS.gene003435 | MS.gene031660 | PPI |
| MS.gene061905 | MS.gene031660 | PPI |
| MS.gene020215 | MS.gene031660 | PPI |
| MS.gene09845 | MS.gene031660 | PPI |
| MS.gene39294 | MS.gene031660 | PPI |
| MS.gene031660 | MS.gene022752 | PPI |
| MS.gene031660 | MS.gene64512 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene031660.t1 | MTR_4g079190 | 88.197 | 305 | 12 | 3 | 1 | 303 | 1 | 283 | 2.13e-180 | 499 |
| MS.gene031660.t1 | MTR_2g103560 | 71.386 | 332 | 65 | 1 | 1 | 302 | 1 | 332 | 4.79e-157 | 442 |
| MS.gene031660.t1 | MTR_1g048860 | 45.270 | 148 | 51 | 1 | 127 | 244 | 2 | 149 | 3.66e-17 | 77.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene031660.t1 | AT1G23280 | 74.611 | 193 | 47 | 1 | 1 | 193 | 1 | 191 | 1.05e-105 | 310 |
Find 56 sgRNAs with CRISPR-Local
Find 226 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAGATGATATAGAAGATTT+TGG | 0.237046 | 4.3:+29904758 | MS.gene031660:CDS |
| GACTTTAGCTTCAAAGAAAC+TGG | 0.316024 | 4.3:+29906018 | MS.gene031660:CDS |
| TATCCGCATCTGAGTCATTT+TGG | 0.319490 | 4.3:-29904035 | None:intergenic |
| CAAATTCCGGTGACATTGTA+AGG | 0.322485 | 4.3:-29902813 | None:intergenic |
| AGGTTATATGGCAAGTTATC+AGG | 0.341917 | 4.3:+29902736 | MS.gene031660:CDS |
| TGAACTTCGGTTACAAATTC+CGG | 0.346804 | 4.3:-29902826 | None:intergenic |
| GTCTATTGAGAAAGAGCTAT+TGG | 0.348403 | 4.3:+29904447 | MS.gene031660:intron |
| TTAATCAAAGGAAAGCAAAA+AGG | 0.387263 | 4.3:+29905990 | MS.gene031660:CDS |
| TGCAGCACGATGAGGTTATA+TGG | 0.401960 | 4.3:+29902724 | MS.gene031660:CDS |
| ATCTTGTGTATAAGAAGCTT+GGG | 0.406860 | 4.3:-29903998 | None:intergenic |
| TACTGCACTGACAGATGTAT+TGG | 0.411812 | 4.3:+29903975 | MS.gene031660:intron |
| ACTCTTTCCCACAAATCCTT+TGG | 0.416287 | 4.3:-29903815 | None:intergenic |
| AATGGCAGCGATGATGAAAA+TGG | 0.418107 | 4.3:+29904809 | MS.gene031660:CDS |
| TATCTTGTGTATAAGAAGCT+TGG | 0.432339 | 4.3:-29903999 | None:intergenic |
| TGCATATATCACCTCCTGTC+TGG | 0.447878 | 4.3:-29904492 | None:intergenic |
| ATTGAAGAGGAATCAGAAAC+AGG | 0.449047 | 4.3:+29904710 | MS.gene031660:intron |
| TGTTGAAGAAGAGGATGAAA+TGG | 0.458882 | 4.3:+29904570 | MS.gene031660:CDS |
| CTCATACGCCAAAGGATTTG+TGG | 0.458884 | 4.3:+29903807 | MS.gene031660:CDS |
| AGCTTCAAAGAAACTGGAAA+AGG | 0.487427 | 4.3:+29906024 | MS.gene031660:CDS |
| ATCTCAAGCTGTTGAAGAAG+AGG | 0.492311 | 4.3:+29904561 | MS.gene031660:CDS |
| AACGACACTGCCAAGAAAAG+AGG | 0.508652 | 4.3:+29904285 | MS.gene031660:CDS |
| GCACAACCATTGCAGTTACA+TGG | 0.509010 | 4.3:+29902758 | MS.gene031660:CDS |
| TGAAGTCATTGACAAACATC+TGG | 0.510638 | 4.3:+29903868 | MS.gene031660:CDS |
| CATAGCGACTATTAGCTAAA+GGG | 0.510834 | 4.3:-29902851 | None:intergenic |
| AAAAGCAGCTGTGCTAGAAA+AGG | 0.513340 | 4.3:+29904342 | MS.gene031660:CDS |
| ATTCACGAGTCACAGGGAAA+TGG | 0.513739 | 4.3:+29904791 | MS.gene031660:CDS |
| GCATAGCGACTATTAGCTAA+AGG | 0.516741 | 4.3:-29902852 | None:intergenic |
| CTCAGATGCGGATACGTATG+AGG | 0.518871 | 4.3:+29904044 | MS.gene031660:CDS |
| AGAATATGTTGAATTTGAAG+AGG | 0.522267 | 4.3:+29904736 | MS.gene031660:CDS |
| CAATGACTTCAAGTGCCTGC+TGG | 0.525481 | 4.3:-29903856 | None:intergenic |
| TCATACGCCAAAGGATTTGT+GGG | 0.528939 | 4.3:+29903808 | MS.gene031660:CDS |
| AGTGCCTGCTGGTAATTCCT+AGG | 0.529178 | 4.3:-29903845 | None:intergenic |
| TTTCTTTGATTTAGAATCAG+AGG | 0.543640 | 4.3:-29906050 | None:intergenic |
| GGGAAAGAGTTAAGCTGCCT+AGG | 0.548712 | 4.3:+29903828 | MS.gene031660:CDS |
| GGAAACTTTCTTTGAAAACA+AGG | 0.556860 | 4.3:+29904065 | MS.gene031660:CDS |
| TAGCTAAAGGGCATGAACTT+CGG | 0.561734 | 4.3:-29902839 | None:intergenic |
| ACCATTGTCTTCACGAATGG+TGG | 0.572329 | 4.3:-29902874 | None:intergenic |
| CAAAACGGACTTTACCAGAC+AGG | 0.572560 | 4.3:+29904478 | MS.gene031660:CDS |
| AAACTGAAGCACTTAATCAA+AGG | 0.580098 | 4.3:+29905978 | MS.gene031660:CDS |
| AGTACCATTGTCTTCACGAA+TGG | 0.580983 | 4.3:-29902877 | None:intergenic |
| AAATTCCGGTGACATTGTAA+GGG | 0.585183 | 4.3:-29902812 | None:intergenic |
| CTATTGGTACGCCTTCAAAA+CGG | 0.597593 | 4.3:+29904463 | MS.gene031660:CDS |
| AGAAACCCTTACAATGTCAC+CGG | 0.609253 | 4.3:+29902807 | MS.gene031660:CDS |
| GAAAGCGAAGGTCCTCATTG+AGG | 0.612298 | 4.3:+29906069 | MS.gene031660:CDS |
| TTCTAAATCAAAGAAAGCGA+AGG | 0.616150 | 4.3:+29906057 | MS.gene031660:CDS |
| AACACGACGATGCTGTCGAA+AGG | 0.621867 | 4.3:+29906765 | MS.gene031660:CDS |
| TTTGCAATTCACGAGTCACA+GGG | 0.623320 | 4.3:+29904785 | MS.gene031660:CDS |
| GCTGCCTAGGAATTACCAGC+AGG | 0.624895 | 4.3:+29903841 | MS.gene031660:CDS |
| CACAAAGATGCAGCACGATG+AGG | 0.628152 | 4.3:+29902716 | None:intergenic |
| TGAAAGAGCTCATACGCCAA+AGG | 0.633610 | 4.3:+29903799 | MS.gene031660:CDS |
| AGTATAAAATTACCTCAATG+AGG | 0.639733 | 4.3:-29906081 | None:intergenic |
| TACATGGCCAAAATTACCAC+CGG | 0.640975 | 4.3:+29902774 | MS.gene031660:CDS |
| GCCACCATTCGTGAAGACAA+TGG | 0.656349 | 4.3:+29902873 | MS.gene031660:CDS |
| TGCTGTCGAAAGGCAAAGAG+CGG | 0.666319 | 4.3:+29906775 | MS.gene031660:CDS |
| AACGGACTTTACCAGACAGG+AGG | 0.681084 | 4.3:+29904481 | MS.gene031660:CDS |
| TGACCAAAATGACTCAGATG+CGG | 0.687329 | 4.3:+29904032 | MS.gene031660:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATACAAAAAAGTTATTGATA+TGG | + | chr4.3:29904531-29904550 | MS.gene031660:CDS | 15.0% |
| !! | ATTTGATTAAAATGACATTT+AGG | + | chr4.3:29903037-29903056 | MS.gene031660:intron | 15.0% |
| !!! | AAATGTCATTTTAATCAAAT+GGG | - | chr4.3:29903037-29903056 | None:intergenic | 15.0% |
| !!! | AATAATAAGTTGATAGTTTA+TGG | + | chr4.3:29903706-29903725 | MS.gene031660:intron | 15.0% |
| !!! | ATAATGGAAGATAATAAAAT+GGG | - | chr4.3:29905797-29905816 | None:intergenic | 15.0% |
| !!! | TAAATGTCATTTTAATCAAA+TGG | - | chr4.3:29903038-29903057 | None:intergenic | 15.0% |
| !! | AAAGATAAAAGAAATATACC+AGG | - | chr4.3:29904686-29904705 | None:intergenic | 20.0% |
| !! | AAATTCTTAGTAACTTAACT+TGG | + | chr4.3:29904648-29904667 | MS.gene031660:intron | 20.0% |
| !! | AACATTCTGTTATAATTTGA+AGG | + | chr4.3:29906248-29906267 | MS.gene031660:intron | 20.0% |
| !! | AACTAAAATACAAAAGATTC+TGG | + | chr4.3:29904979-29904998 | MS.gene031660:intron | 20.0% |
| !! | AATATATGTGAAATAGGTTA+TGG | + | chr4.3:29904900-29904919 | MS.gene031660:intron | 20.0% |
| !! | ATATAGTTATGAAATTCTTG+TGG | + | chr4.3:29902951-29902970 | MS.gene031660:intron | 20.0% |
| !! | ATTAAAAAGCAATAACATGA+TGG | + | chr4.3:29905919-29905938 | MS.gene031660:intron | 20.0% |
| !! | CTTGATAAATAAGAATCAAA+AGG | - | chr4.3:29905605-29905624 | None:intergenic | 20.0% |
| !! | GTAAATAGATGAGTAAAAAA+TGG | - | chr4.3:29905561-29905580 | None:intergenic | 20.0% |
| !! | TAAAATAATCATCCATAGTA+TGG | - | chr4.3:29905339-29905358 | None:intergenic | 20.0% |
| !! | TGCTAAAATATATGTGAAAT+AGG | + | chr4.3:29904894-29904913 | MS.gene031660:intron | 20.0% |
| !! | TTATTGTTAAAAAGAAGCAA+AGG | - | chr4.3:29904107-29904126 | None:intergenic | 20.0% |
| !!! | AGTGAATTTTGTCTATTTTT+TGG | - | chr4.3:29905734-29905753 | None:intergenic | 20.0% |
| !!! | CTTTTGATTCTTATTTATCA+AGG | + | chr4.3:29905603-29905622 | MS.gene031660:intron | 20.0% |
| !!! | GATAATGGAAGATAATAAAA+TGG | - | chr4.3:29905798-29905817 | None:intergenic | 20.0% |
| !!! | GTGAATTTTGTCTATTTTTT+GGG | - | chr4.3:29905733-29905752 | None:intergenic | 20.0% |
| !!! | TATTACATTTTCCATTCAAA+AGG | - | chr4.3:29903690-29903709 | None:intergenic | 20.0% |
| !!! | TATTTTATCTTTTCCTTGTT+TGG | + | chr4.3:29905352-29905371 | MS.gene031660:intron | 20.0% |
| !!! | TCCTTTATCTACTATATTTT+AGG | + | chr4.3:29904172-29904191 | MS.gene031660:intron | 20.0% |
| !!! | TTTTGATTTTCATTGTTTTC+AGG | + | chr4.3:29906739-29906758 | MS.gene031660:intron | 20.0% |
| ! | AAAATCAAAATTGTGATGTC+AGG | - | chr4.3:29906729-29906748 | None:intergenic | 25.0% |
| ! | AAATATTTCTTCACTCATCA+AGG | + | chr4.3:29904935-29904954 | MS.gene031660:intron | 25.0% |
| ! | AATATTCAAAAGAAACAGTG+AGG | - | chr4.3:29904422-29904441 | None:intergenic | 25.0% |
| ! | ACTTTGATATCTTAGACATT+TGG | + | chr4.3:29903075-29903094 | MS.gene031660:intron | 25.0% |
| ! | AGAATATGTTGAATTTGAAG+AGG | + | chr4.3:29904736-29904755 | MS.gene031660:CDS | 25.0% |
| ! | AGTATAAAATTACCTCAATG+AGG | - | chr4.3:29906084-29906103 | None:intergenic | 25.0% |
| ! | ATAACATAATTTAGTACGCA+CGG | - | chr4.3:29904390-29904409 | None:intergenic | 25.0% |
| ! | CAAAAAAGTTATTGATATGG+TGG | + | chr4.3:29904534-29904553 | MS.gene031660:CDS | 25.0% |
| ! | CACAATAGCATTTAAAAGAA+CGG | - | chr4.3:29906127-29906146 | None:intergenic | 25.0% |
| ! | CATGTCAATGATTATGATTA+AGG | + | chr4.3:29903141-29903160 | MS.gene031660:intron | 25.0% |
| ! | GAAAATAGTTATCCATACTA+TGG | + | chr4.3:29905324-29905343 | MS.gene031660:intron | 25.0% |
| ! | GCCTAAAATATAGTAGATAA+AGG | - | chr4.3:29904176-29904195 | None:intergenic | 25.0% |
| ! | TGGGAGAACTTATAAAAAAA+GGG | - | chr4.3:29903588-29903607 | None:intergenic | 25.0% |
| ! | TTAATCAAAGGAAAGCAAAA+AGG | + | chr4.3:29905990-29906009 | MS.gene031660:CDS | 25.0% |
| ! | TTGGGAGAACTTATAAAAAA+AGG | - | chr4.3:29903589-29903608 | None:intergenic | 25.0% |
| ! | TTGTAAGTAATTGTTGTGAT+TGG | + | chr4.3:29903941-29903960 | MS.gene031660:intron | 25.0% |
| !! | ATTTTCCAAAATCACTAACA+AGG | - | chr4.3:29905882-29905901 | None:intergenic | 25.0% |
| !! | GAAGATGATATAGAAGATTT+TGG | + | chr4.3:29904758-29904777 | MS.gene031660:CDS | 25.0% |
| !! | GATGTTTTCATAAGTTATCT+TGG | + | chr4.3:29903350-29903369 | MS.gene031660:intron | 25.0% |
| !! | TATTACAACAAAAGTGTGTT+TGG | - | chr4.3:29906490-29906509 | None:intergenic | 25.0% |
| !! | TTTATCTTTTCAGATTGAAG+AGG | + | chr4.3:29904697-29904716 | MS.gene031660:intron | 25.0% |
| !! | TTTCAATAGTTTTCATGTAG+AGG | - | chr4.3:29903784-29903803 | None:intergenic | 25.0% |
| !! | TTTCTTTGATTTAGAATCAG+AGG | - | chr4.3:29906053-29906072 | None:intergenic | 25.0% |
| !! | TTTTCATAAGTTATCTTGGA+GGG | + | chr4.3:29903354-29903373 | MS.gene031660:intron | 25.0% |
| !!! | AATCTTCTTTTTTGCTTGTT+CGG | - | chr4.3:29905687-29905706 | None:intergenic | 25.0% |
| !!! | ACACTTTTGTTGTAATATTG+CGG | + | chr4.3:29906493-29906512 | MS.gene031660:intron | 25.0% |
| !!! | GCTGTTTTAATAAGTTATCT+TGG | + | chr4.3:29903309-29903328 | MS.gene031660:intron | 25.0% |
| AAGTTATCTTGGAGAGTTTA+TGG | + | chr4.3:29903320-29903339 | MS.gene031660:intron | 30.0% | |
| ACAATGCAAATGATAGCAAA+TGG | + | chr4.3:29905298-29905317 | MS.gene031660:intron | 30.0% | |
| AGGGTTTCTACAAAAAATAC+CGG | - | chr4.3:29902796-29902815 | None:intergenic | 30.0% | |
| AGTGTTCTTCTCAAATGATA+AGG | - | chr4.3:29905857-29905876 | None:intergenic | 30.0% | |
| ATAAAATGGGCAGAAAGTAA+AGG | - | chr4.3:29905784-29905803 | None:intergenic | 30.0% | |
| ATCTTGTGTATAAGAAGCTT+GGG | - | chr4.3:29904001-29904020 | None:intergenic | 30.0% | |
| ATTATGATTAAGGCTCTGTT+TGG | + | chr4.3:29903151-29903170 | MS.gene031660:intron | 30.0% | |
| ATTGCAGCTTATATATCATG+AGG | + | chr4.3:29903208-29903227 | MS.gene031660:intron | 30.0% | |
| CAATGCAAATGATAGCAAAT+GGG | + | chr4.3:29905299-29905318 | MS.gene031660:intron | 30.0% | |
| CATTTGGATGCAAAAGATAA+TGG | - | chr4.3:29905813-29905832 | None:intergenic | 30.0% | |
| CTTTGAGCTGTAGTAAATAT+TGG | + | chr4.3:29905080-29905099 | MS.gene031660:intron | 30.0% | |
| GGGAGAACTTATAAAAAAAG+GGG | - | chr4.3:29903587-29903606 | None:intergenic | 30.0% | |
| GTGTGTTTGGCATAATTATT+TGG | - | chr4.3:29906477-29906496 | None:intergenic | 30.0% | |
| TAACATAATTTAGTACGCAC+GGG | - | chr4.3:29904389-29904408 | None:intergenic | 30.0% | |
| TATCTTGTGTATAAGAAGCT+TGG | - | chr4.3:29904002-29904021 | None:intergenic | 30.0% | |
| TTCTAAATCAAAGAAAGCGA+AGG | + | chr4.3:29906057-29906076 | MS.gene031660:CDS | 30.0% | |
| ! | AAAAATACCGGTGGTAATTT+TGG | - | chr4.3:29902784-29902803 | None:intergenic | 30.0% |
| ! | AAACTGAAGCACTTAATCAA+AGG | + | chr4.3:29905978-29905997 | MS.gene031660:CDS | 30.0% |
| ! | GGAAACTTTCTTTGAAAACA+AGG | + | chr4.3:29904065-29904084 | MS.gene031660:CDS | 30.0% |
| ! | GTTTTCATAAGTTATCTTGG+AGG | + | chr4.3:29903353-29903372 | MS.gene031660:intron | 30.0% |
| ! | TTGTATCGTATCCTTTTGAA+TGG | + | chr4.3:29903676-29903695 | MS.gene031660:intron | 30.0% |
| !! | TGATTTTCATTGTTTTCAGG+TGG | + | chr4.3:29906742-29906761 | MS.gene031660:intron | 30.0% |
| !! | TTATCTTTTCCTTGTTTGGT+TGG | + | chr4.3:29905356-29905375 | MS.gene031660:intron | 30.0% |
| !!! | TTGGTTGTTGTTGTTTTACA+GGG | + | chr4.3:29904255-29904274 | MS.gene031660:intron | 30.0% |
| !!! | TTTTTTTTCTCATGTCGTGA+TGG | + | chr4.3:29905430-29905449 | MS.gene031660:intron | 30.0% |
| AAATTCCGGTGACATTGTAA+GGG | - | chr4.3:29902815-29902834 | None:intergenic | 35.0% | |
| AACAACCAACATGATCAATC+AGG | - | chr4.3:29904244-29904263 | None:intergenic | 35.0% | |
| ACAATTGCATTGTGTGATGT+AGG | + | chr4.3:29903749-29903768 | MS.gene031660:intron | 35.0% | |
| ACCAAAATTCCCAAAAGAAG+TGG | - | chr4.3:29906199-29906218 | None:intergenic | 35.0% | |
| AGCTTCAAAGAAACTGGAAA+AGG | + | chr4.3:29906024-29906043 | MS.gene031660:CDS | 35.0% | |
| AGGATACGATACAACCATTT+AGG | - | chr4.3:29903670-29903689 | None:intergenic | 35.0% | |
| AGGTTATATGGCAAGTTATC+AGG | + | chr4.3:29902736-29902755 | MS.gene031660:CDS | 35.0% | |
| ATAAGAATCAAAAGGATCCC+AGG | - | chr4.3:29905597-29905616 | None:intergenic | 35.0% | |
| ATGGCATTTACTAATGCAGA+TGG | + | chr4.3:29905938-29905957 | MS.gene031660:intron | 35.0% | |
| ATGTGGGGTAGGTAATAATT+TGG | + | chr4.3:29903104-29903123 | MS.gene031660:intron | 35.0% | |
| ATTGAAGAGGAATCAGAAAC+AGG | + | chr4.3:29904710-29904729 | MS.gene031660:intron | 35.0% | |
| CATAGCGACTATTAGCTAAA+GGG | - | chr4.3:29902854-29902873 | None:intergenic | 35.0% | |
| CTATCTAAACAGACCCTAAA+TGG | + | chr4.3:29903653-29903672 | MS.gene031660:intron | 35.0% | |
| CTCGTGTTCGAAACAATTAA+GGG | + | chr4.3:29906524-29906543 | MS.gene031660:intron | 35.0% | |
| GGATACGATACAACCATTTA+GGG | - | chr4.3:29903669-29903688 | None:intergenic | 35.0% | |
| GTCTATTGAGAAAGAGCTAT+TGG | + | chr4.3:29904447-29904466 | MS.gene031660:intron | 35.0% | |
| GTGGAGAAAACTGCATTATT+TGG | + | chr4.3:29902977-29902996 | MS.gene031660:intron | 35.0% | |
| GTTTCTACAAAAAATACCGG+TGG | - | chr4.3:29902793-29902812 | None:intergenic | 35.0% | |
| TAAATGATGCTGCTACAAAC+TGG | + | chr4.3:29906291-29906310 | MS.gene031660:intron | 35.0% | |
| TACAATACACCCAATATGGT+GGG | + | chr4.3:29903513-29903532 | MS.gene031660:intron | 35.0% | |
| TAGAAGCTTTGCAATATGCA+TGG | + | chr4.3:29904844-29904863 | MS.gene031660:intron | 35.0% | |
| TAGCAGTTTCTCCATAAAAG+TGG | + | chr4.3:29904218-29904237 | MS.gene031660:intron | 35.0% | |
| TATGAAATTCTTGTGGAGTG+TGG | + | chr4.3:29902958-29902977 | MS.gene031660:intron | 35.0% | |
| TCTCGTGTTCGAAACAATTA+AGG | + | chr4.3:29906523-29906542 | MS.gene031660:intron | 35.0% | |
| TGAACTTCGGTTACAAATTC+CGG | - | chr4.3:29902829-29902848 | None:intergenic | 35.0% | |
| TGAAGTCATTGACAAACATC+TGG | + | chr4.3:29903868-29903887 | MS.gene031660:CDS | 35.0% | |
| TGTTGAAGAAGAGGATGAAA+TGG | + | chr4.3:29904570-29904589 | MS.gene031660:CDS | 35.0% | |
| ! | AACAACTCAACCACTTCTTT+TGG | + | chr4.3:29906186-29906205 | MS.gene031660:intron | 35.0% |
| ! | ACAACTCAACCACTTCTTTT+GGG | + | chr4.3:29906187-29906206 | MS.gene031660:intron | 35.0% |
| ! | ACTCTCCTTGTTAGTGATTT+TGG | + | chr4.3:29905874-29905893 | MS.gene031660:intron | 35.0% |
| ! | AGGGAAATTTTGCTAATCAG+AGG | + | chr4.3:29905398-29905417 | MS.gene031660:intron | 35.0% |
| ! | CATTTAGGGTCTGTTTAGAT+AGG | - | chr4.3:29903655-29903674 | None:intergenic | 35.0% |
| ! | CTTTTATGGAGAAACTGCTA+TGG | - | chr4.3:29904218-29904237 | None:intergenic | 35.0% |
| ! | GACTTTAGCTTCAAAGAAAC+TGG | + | chr4.3:29906018-29906037 | MS.gene031660:CDS | 35.0% |
| ! | GATTATTTGAGTTTGTCTGC+TGG | - | chr4.3:29903633-29903652 | None:intergenic | 35.0% |
| ! | GATTCTGGATTAGATATGCA+TGG | + | chr4.3:29904994-29905013 | MS.gene031660:intron | 35.0% |
| ! | TCTCTCTTAACCTCTTTTCT+TGG | - | chr4.3:29904298-29904317 | None:intergenic | 35.0% |
| !! | ACCACTTCTTTTGGGAATTT+TGG | + | chr4.3:29906195-29906214 | MS.gene031660:intron | 35.0% |
| !! | AGACATTTGGTTCTTCATGT+GGG | + | chr4.3:29903088-29903107 | MS.gene031660:intron | 35.0% |
| !! | TAGACATTTGGTTCTTCATG+TGG | + | chr4.3:29903087-29903106 | MS.gene031660:intron | 35.0% |
| !! | TTTTCCTTGTTTGGTTGGTT+GGG | + | chr4.3:29905361-29905380 | MS.gene031660:intron | 35.0% |
| !!! | CTTACCCTGTTTTTTTACAC+AGG | - | chr4.3:29903487-29903506 | None:intergenic | 35.0% |
| !!! | GTTGGTTGTTGTTGTTTTAC+AGG | + | chr4.3:29904254-29904273 | MS.gene031660:intron | 35.0% |
| !!! | TTCTTTTTTGCTTGTTCGGT+TGG | - | chr4.3:29905683-29905702 | None:intergenic | 35.0% |
| AAAAGCAGCTGTGCTAGAAA+AGG | + | chr4.3:29904342-29904361 | MS.gene031660:CDS | 40.0% | |
| AAGTTATCTTGGAGGGCTTA+TGG | + | chr4.3:29903361-29903380 | MS.gene031660:intron | 40.0% | |
| AATGGCAGCGATGATGAAAA+TGG | + | chr4.3:29904809-29904828 | MS.gene031660:CDS | 40.0% | |
| ACTCTTTCCCACAAATCCTT+TGG | - | chr4.3:29903818-29903837 | None:intergenic | 40.0% | |
| AGAAACCCTTACAATGTCAC+CGG | + | chr4.3:29902807-29902826 | MS.gene031660:CDS | 40.0% | |
| AGCCTCCTGTGTAAAAAAAC+AGG | + | chr4.3:29903479-29903498 | MS.gene031660:intron | 40.0% | |
| AGTACCATTGTCTTCACGAA+TGG | - | chr4.3:29902880-29902899 | None:intergenic | 40.0% | |
| AGTTGTCTCTTCACTTGAGA+GGG | - | chr4.3:29905508-29905527 | None:intergenic | 40.0% | |
| ATCTCAAGCTGTTGAAGAAG+AGG | + | chr4.3:29904561-29904580 | MS.gene031660:CDS | 40.0% | |
| ATGGAGGGACGAAATATCAA+GGG | + | chr4.3:29905449-29905468 | MS.gene031660:intron | 40.0% | |
| CAAATTCCGGTGACATTGTA+AGG | - | chr4.3:29902816-29902835 | None:intergenic | 40.0% | |
| CATCCAAATGAGACATATGC+TGG | + | chr4.3:29905823-29905842 | MS.gene031660:intron | 40.0% | |
| CTATTGGTACGCCTTCAAAA+CGG | + | chr4.3:29904463-29904482 | MS.gene031660:CDS | 40.0% | |
| GATATGACTGCAGTATCTAG+AGG | - | chr4.3:29905164-29905183 | None:intergenic | 40.0% | |
| GCATAGCGACTATTAGCTAA+AGG | - | chr4.3:29902855-29902874 | None:intergenic | 40.0% | |
| GCCTCCTGTGTAAAAAAACA+GGG | + | chr4.3:29903480-29903499 | MS.gene031660:intron | 40.0% | |
| GTACAATACACCCAATATGG+TGG | + | chr4.3:29903512-29903531 | MS.gene031660:intron | 40.0% | |
| GTGACTGCTTGAGTTCTATA+TGG | + | chr4.3:29906601-29906620 | MS.gene031660:intron | 40.0% | |
| GTTGTTGTCACATCACTGAA+AGG | + | chr4.3:29903433-29903452 | MS.gene031660:intron | 40.0% | |
| TACATCTGTCAGTGCAGTAA+AGG | - | chr4.3:29903974-29903993 | None:intergenic | 40.0% | |
| TACATGGCCAAAATTACCAC+CGG | + | chr4.3:29902774-29902793 | MS.gene031660:CDS | 40.0% | |
| TAGTTGTCTCTTCACTTGAG+AGG | - | chr4.3:29905509-29905528 | None:intergenic | 40.0% | |
| TCATACGCCAAAGGATTTGT+GGG | + | chr4.3:29903808-29903827 | MS.gene031660:CDS | 40.0% | |
| TGACCAAAATGACTCAGATG+CGG | + | chr4.3:29904032-29904051 | MS.gene031660:CDS | 40.0% | |
| TGCGTACAATACACCCAATA+TGG | + | chr4.3:29903509-29903528 | MS.gene031660:intron | 40.0% | |
| TTATAAAAAAAGGGGCAGCC+CGG | - | chr4.3:29903579-29903598 | None:intergenic | 40.0% | |
| TTTGCAATTCACGAGTCACA+GGG | + | chr4.3:29904785-29904804 | MS.gene031660:CDS | 40.0% | |
| ! | ACTTGGTAATATGTTGAGCC+TGG | + | chr4.3:29904665-29904684 | MS.gene031660:intron | 40.0% |
| ! | TACTGCACTGACAGATGTAT+TGG | + | chr4.3:29903975-29903994 | MS.gene031660:intron | 40.0% |
| ! | TAGCTAAAGGGCATGAACTT+CGG | - | chr4.3:29902842-29902861 | None:intergenic | 40.0% |
| ! | TATCCGCATCTGAGTCATTT+TGG | - | chr4.3:29904038-29904057 | None:intergenic | 40.0% |
| ! | TCTGGTAAAGTCCGTTTTGA+AGG | - | chr4.3:29904477-29904496 | None:intergenic | 40.0% |
| ! | TGTAAATTTTCCCAACGCCT+TGG | + | chr4.3:29903398-29903417 | MS.gene031660:intron | 40.0% |
| ! | TTGGTTGGTTGGGTAGAAAA+CGG | + | chr4.3:29905371-29905390 | MS.gene031660:intron | 40.0% |
| ! | TTTTGCAATTCACGAGTCAC+AGG | + | chr4.3:29904784-29904803 | MS.gene031660:CDS | 40.0% |
| ! | TTTTGGCCATGTAACTGCAA+TGG | - | chr4.3:29902767-29902786 | None:intergenic | 40.0% |
| ! | TTTTTCTCATGTCGTGATGG+AGG | + | chr4.3:29905433-29905452 | MS.gene031660:intron | 40.0% |
| !! | CTTTTCCTTGTTTGGTTGGT+TGG | + | chr4.3:29905360-29905379 | MS.gene031660:intron | 40.0% |
| !! | GACATTTGGTTCTTCATGTG+GGG | + | chr4.3:29903089-29903108 | MS.gene031660:intron | 40.0% |
| !! | TTTTCTCATGTCGTGATGGA+GGG | + | chr4.3:29905434-29905453 | MS.gene031660:intron | 40.0% |
| !!! | ACCCTGTTTTTTTACACAGG+AGG | - | chr4.3:29903484-29903503 | None:intergenic | 40.0% |
| !!! | GATCAATCAGGCCACTTTTA+TGG | - | chr4.3:29904232-29904251 | None:intergenic | 40.0% |
| AACGACACTGCCAAGAAAAG+AGG | + | chr4.3:29904285-29904304 | MS.gene031660:CDS | 45.0% | |
| AAGGTCACACGTTCAAGTCT+TGG | + | chr4.3:29903452-29903471 | MS.gene031660:intron | 45.0% | |
| AATGAGACATATGCTGGAGG+CGG | + | chr4.3:29905829-29905848 | MS.gene031660:intron | 45.0% | |
| ACCATTGTCTTCACGAATGG+TGG | - | chr4.3:29902877-29902896 | None:intergenic | 45.0% | |
| AGAACGGATCGCTTTATACG+AGG | - | chr4.3:29906111-29906130 | None:intergenic | 45.0% | |
| AGGTCAGCATGCAAAAATGG+AGG | - | chr4.3:29906403-29906422 | None:intergenic | 45.0% | |
| AGTGGCCTGATTGATCATGT+TGG | + | chr4.3:29904236-29904255 | MS.gene031660:intron | 45.0% | |
| ATTCACGAGTCACAGGGAAA+TGG | + | chr4.3:29904791-29904810 | MS.gene031660:CDS | 45.0% | |
| CAAGGGGGAGAAATAATGTG+AGG | + | chr4.3:29905466-29905485 | MS.gene031660:intron | 45.0% | |
| CCAAATGAGACATATGCTGG+AGG | + | chr4.3:29905826-29905845 | MS.gene031660:intron | 45.0% | |
| CCTCCAGCATATGTCTCATT+TGG | - | chr4.3:29905829-29905848 | None:intergenic | 45.0% | |
| CGACTTCTCTTTGTCTTGCT+TGG | + | chr4.3:29906437-29906456 | MS.gene031660:intron | 45.0% | |
| CTCATACGCCAAAGGATTTG+TGG | + | chr4.3:29903807-29903826 | MS.gene031660:CDS | 45.0% | |
| GATGGAGGGACGAAATATCA+AGG | + | chr4.3:29905448-29905467 | MS.gene031660:intron | 45.0% | |
| GCAAGACAAAGAGAAGTCGT+AGG | - | chr4.3:29906436-29906455 | None:intergenic | 45.0% | |
| GCACAACCATTGCAGTTACA+TGG | + | chr4.3:29902758-29902777 | MS.gene031660:CDS | 45.0% | |
| GTGAGGTCAGCATGCAAAAA+TGG | - | chr4.3:29906406-29906425 | None:intergenic | 45.0% | |
| TAGTACGCACGGGTAACATT+CGG | - | chr4.3:29904379-29904398 | None:intergenic | 45.0% | |
| TCTACCCAACCAACCAAACA+AGG | - | chr4.3:29905368-29905387 | None:intergenic | 45.0% | |
| TGAAAGAGCTCATACGCCAA+AGG | + | chr4.3:29903799-29903818 | MS.gene031660:CDS | 45.0% | |
| TGCAGCACGATGAGGTTATA+TGG | + | chr4.3:29902724-29902743 | MS.gene031660:CDS | 45.0% | |
| TGCATATATCACCTCCTGTC+TGG | - | chr4.3:29904495-29904514 | None:intergenic | 45.0% | |
| TGGAGGGACGAAATATCAAG+GGG | + | chr4.3:29905450-29905469 | MS.gene031660:intron | 45.0% | |
| TTGGGTAGAAAACGGGAGAA+GGG | + | chr4.3:29905379-29905398 | MS.gene031660:intron | 45.0% | |
| ! | CAAAACGGACTTTACCAGAC+AGG | + | chr4.3:29904478-29904497 | MS.gene031660:CDS | 45.0% |
| ! | TGGCATAAGCACTTCTGAGA+CGG | - | chr4.3:29903613-29903632 | None:intergenic | 45.0% |
| ! | TGGTTGGTTGGGTAGAAAAC+GGG | + | chr4.3:29905372-29905391 | MS.gene031660:intron | 45.0% |
| !! | AAGTCGTAGGTAGCTTTGTG+AGG | - | chr4.3:29906423-29906442 | None:intergenic | 45.0% |
| !! | TTTGGTTCTTCATGTGGGGT+AGG | + | chr4.3:29903093-29903112 | MS.gene031660:intron | 45.0% |
| AACACGACGATGCTGTCGAA+AGG | + | chr4.3:29906765-29906784 | MS.gene031660:CDS | 50.0% | |
| ACAACTTTCCCGTTACGCCA+AGG | - | chr4.3:29903418-29903437 | None:intergenic | 50.0% | |
| AGAAGGGGTCCCACCATATT+GGG | - | chr4.3:29903525-29903544 | None:intergenic | 50.0% | |
| AGTGCCTGCTGGTAATTCCT+AGG | - | chr4.3:29903848-29903867 | None:intergenic | 50.0% | |
| ATGAGACATATGCTGGAGGC+GGG | + | chr4.3:29905830-29905849 | MS.gene031660:intron | 50.0% | |
| CAATGACTTCAAGTGCCTGC+TGG | - | chr4.3:29903859-29903878 | None:intergenic | 50.0% | |
| CTCAGATGCGGATACGTATG+AGG | + | chr4.3:29904044-29904063 | MS.gene031660:CDS | 50.0% | |
| GAAAGCGAAGGTCCTCATTG+AGG | + | chr4.3:29906069-29906088 | MS.gene031660:CDS | 50.0% | |
| GCCACCATTCGTGAAGACAA+TGG | + | chr4.3:29902873-29902892 | MS.gene031660:CDS | 50.0% | |
| GGAGGGACGAAATATCAAGG+GGG | + | chr4.3:29905451-29905470 | MS.gene031660:intron | 50.0% | |
| GGGAAAGAGTTAAGCTGCCT+AGG | + | chr4.3:29903828-29903847 | MS.gene031660:CDS | 50.0% | |
| GTTGGGTAGAAAACGGGAGA+AGG | + | chr4.3:29905378-29905397 | MS.gene031660:intron | 50.0% | |
| TGCTGTCGAAAGGCAAAGAG+CGG | + | chr4.3:29906775-29906794 | MS.gene031660:CDS | 50.0% | |
| TTACCTCGCTCATCTAGCCT+GGG | + | chr4.3:29905577-29905596 | MS.gene031660:intron | 50.0% | |
| TTTACCTCGCTCATCTAGCC+TGG | + | chr4.3:29905576-29905595 | MS.gene031660:intron | 50.0% | |
| ! | AACGGACTTTACCAGACAGG+AGG | + | chr4.3:29904481-29904500 | MS.gene031660:CDS | 50.0% |
| ! | AATATGGTGGGACCCCTTCT+CGG | + | chr4.3:29903525-29903544 | MS.gene031660:intron | 50.0% |
| !! | AAGCACTTCTGAGACGGGTT+GGG | - | chr4.3:29903607-29903626 | None:intergenic | 50.0% |
| !! | GGCATAAGCACTTCTGAGAC+GGG | - | chr4.3:29903612-29903631 | None:intergenic | 50.0% |
| !! | TAAGCACTTCTGAGACGGGT+TGG | - | chr4.3:29903608-29903627 | None:intergenic | 50.0% |
| GAGAAGGGGTCCCACCATAT+TGG | - | chr4.3:29903526-29903545 | None:intergenic | 55.0% | |
| GCTGCCTAGGAATTACCAGC+AGG | + | chr4.3:29903841-29903860 | MS.gene031660:CDS | 55.0% | |
| TTCCCAACGCCTTGGCGTAA+CGG | + | chr4.3:29903406-29903425 | MS.gene031660:intron | 55.0% | |
| ! | ACGCAGGAGCTTTAGTGCAC+CGG | + | chr4.3:29903557-29903576 | MS.gene031660:intron | 55.0% |
| CGTGTGCAGAGTCCGAGAAG+GGG | - | chr4.3:29903540-29903559 | None:intergenic | 60.0% | |
| GATCCCAGGCTAGATGAGCG+AGG | - | chr4.3:29905583-29905602 | None:intergenic | 60.0% | |
| GCGTGTGCAGAGTCCGAGAA+GGG | - | chr4.3:29903541-29903560 | None:intergenic | 60.0% | |
| TCCCAACGCCTTGGCGTAAC+GGG | + | chr4.3:29903407-29903426 | MS.gene031660:intron | 60.0% | |
| TGCGTGTGCAGAGTCCGAGA+AGG | - | chr4.3:29903542-29903561 | None:intergenic | 60.0% | |
| TTCCCGTTACGCCAAGGCGT+TGG | - | chr4.3:29903412-29903431 | None:intergenic | 60.0% | |
| TTCTCGGACTCTGCACACGC+AGG | + | chr4.3:29903541-29903560 | MS.gene031660:intron | 60.0% | |
| ! | CGCAGGAGCTTTAGTGCACC+GGG | + | chr4.3:29903558-29903577 | MS.gene031660:intron | 60.0% |
| ! | TCCCGTTACGCCAAGGCGTT+GGG | - | chr4.3:29903411-29903430 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 29902723 | 29906805 | 29902723 | ID=MS.gene031660 |
| chr4.3 | mRNA | 29902723 | 29906805 | 29902723 | ID=MS.gene031660.t1;Parent=MS.gene031660 |
| chr4.3 | exon | 29902723 | 29902894 | 29902723 | ID=MS.gene031660.t1.exon1;Parent=MS.gene031660.t1 |
| chr4.3 | CDS | 29902723 | 29902894 | 29902723 | ID=cds.MS.gene031660.t1;Parent=MS.gene031660.t1 |
| chr4.3 | exon | 29903771 | 29903889 | 29903771 | ID=MS.gene031660.t1.exon2;Parent=MS.gene031660.t1 |
| chr4.3 | CDS | 29903771 | 29903889 | 29903771 | ID=cds.MS.gene031660.t1;Parent=MS.gene031660.t1 |
| chr4.3 | exon | 29903989 | 29904086 | 29903989 | ID=MS.gene031660.t1.exon3;Parent=MS.gene031660.t1 |
| chr4.3 | CDS | 29903989 | 29904086 | 29903989 | ID=cds.MS.gene031660.t1;Parent=MS.gene031660.t1 |
| chr4.3 | exon | 29904276 | 29904363 | 29904276 | ID=MS.gene031660.t1.exon4;Parent=MS.gene031660.t1 |
| chr4.3 | CDS | 29904276 | 29904363 | 29904276 | ID=cds.MS.gene031660.t1;Parent=MS.gene031660.t1 |
| chr4.3 | exon | 29904448 | 29904591 | 29904448 | ID=MS.gene031660.t1.exon5;Parent=MS.gene031660.t1 |
| chr4.3 | CDS | 29904448 | 29904591 | 29904448 | ID=cds.MS.gene031660.t1;Parent=MS.gene031660.t1 |
| chr4.3 | exon | 29904719 | 29904830 | 29904719 | ID=MS.gene031660.t1.exon6;Parent=MS.gene031660.t1 |
| chr4.3 | CDS | 29904719 | 29904830 | 29904719 | ID=cds.MS.gene031660.t1;Parent=MS.gene031660.t1 |
| chr4.3 | exon | 29905957 | 29906090 | 29905957 | ID=MS.gene031660.t1.exon7;Parent=MS.gene031660.t1 |
| chr4.3 | CDS | 29905957 | 29906090 | 29905957 | ID=cds.MS.gene031660.t1;Parent=MS.gene031660.t1 |
| chr4.3 | exon | 29906761 | 29906805 | 29906761 | ID=MS.gene031660.t1.exon8;Parent=MS.gene031660.t1 |
| chr4.3 | CDS | 29906761 | 29906805 | 29906761 | ID=cds.MS.gene031660.t1;Parent=MS.gene031660.t1 |
| Gene Sequence |
| Protein sequence |
