Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene003435.t1 | XP_024638686.1 | 99.7 | 305 | 1 | 0 | 56 | 360 | 1 | 305 | 6.30E-166 | 593.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene003435.t1 | Q9ASU7 | 75.6 | 295 | 66 | 1 | 68 | 362 | 17 | 305 | 9.6e-123 | 441.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene003435.t1 | A0A396IA18 | 99.7 | 305 | 1 | 0 | 56 | 360 | 1 | 305 | 4.5e-166 | 593.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene003435.t1 | MTR_4g075050 | 86.275 | 306 | 1 | 1 | 56 | 361 | 1 | 265 | 0.0 | 517 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene003435.t1 | AT5G61770 | 75.593 | 295 | 66 | 1 | 68 | 362 | 17 | 305 | 9.76e-164 | 462 |
| MS.gene003435.t1 | AT5G61770 | 76.109 | 293 | 64 | 1 | 68 | 360 | 17 | 303 | 1.83e-163 | 461 |
| MS.gene003435.t1 | AT5G61770 | 76.109 | 293 | 64 | 1 | 68 | 360 | 17 | 303 | 1.83e-163 | 461 |
Find 71 sgRNAs with CRISPR-Local
Find 218 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAGTCCTCTTCGACGAATT+TGG | 0.262207 | 4.3:-32362671 | MS.gene003435:intron |
| AACAGCTTCAAATGGATCTT+AGG | 0.299089 | 4.3:-32366171 | MS.gene003435:CDS |
| TTATTCTTCTTGATAATAAC+AGG | 0.299950 | 4.3:+32366292 | None:intergenic |
| GGTATCTTCTTTCCAGTAAT+GGG | 0.301868 | 4.3:+32366238 | None:intergenic |
| AAACAGAGGAAGAATCAAAA+AGG | 0.315897 | 4.3:-32366325 | MS.gene003435:intron |
| CCTAGTATTGATCCCATTAC+TGG | 0.323015 | 4.3:-32366250 | MS.gene003435:CDS |
| GCCATCAAGTTCCTGATCTA+AGG | 0.340037 | 4.3:-32363433 | MS.gene003435:CDS |
| AGAGACTTTCTGAATGTTGC+TGG | 0.344183 | 4.3:-32364391 | MS.gene003435:CDS |
| TCCATTTGAAGCTGTTTAAG+AGG | 0.355195 | 4.3:+32366178 | None:intergenic |
| GGGAGATATTAGAAGTATAT+CGG | 0.357927 | 4.3:+32366655 | None:intergenic |
| TGAAGCTGTTTAAGAGGAAC+AGG | 0.377362 | 4.3:+32366184 | None:intergenic |
| GGATGACTCTTCAACTAGTT+AGG | 0.382251 | 4.3:-32362718 | MS.gene003435:CDS |
| TGGTATCTTCTTTCCAGTAA+TGG | 0.384814 | 4.3:+32366237 | None:intergenic |
| TCTGAATGTTGCTGGACCTA+TGG | 0.387257 | 4.3:-32364383 | MS.gene003435:CDS |
| ATTCGCTTTGAAACACCTAT+AGG | 0.388518 | 4.3:+32363473 | None:intergenic |
| TCCTTAGATCAGGAACTTGA+TGG | 0.390780 | 4.3:+32363432 | None:intergenic |
| TTACGGCTGCAACTAGTGTT+AGG | 0.391218 | 4.3:+32366615 | None:intergenic |
| TTGAGACTGAGAGCAGTATA+AGG | 0.391440 | 4.3:+32366136 | None:intergenic |
| TGATTTGTAAGGGCTGGTTA+TGG | 0.404504 | 4.3:-32362854 | MS.gene003435:intron |
| GTGACTTTGTCTAGTAATCT+TGG | 0.411075 | 4.3:-32362797 | MS.gene003435:CDS |
| GAGAGTGCGAAGTTGGTTTA+CGG | 0.412564 | 4.3:+32366598 | None:intergenic |
| AATTAAGCAACACAATCCTT+TGG | 0.413513 | 4.3:+32363549 | None:intergenic |
| TCAATTAGATTACAACCTAT+AGG | 0.417293 | 4.3:-32363488 | MS.gene003435:CDS |
| TCCTCTTAAACAGCTTCAAA+TGG | 0.419326 | 4.3:-32366179 | MS.gene003435:CDS |
| TAGGTTTCTTTCGCAGAGAA+TGG | 0.427971 | 4.3:+32366634 | None:intergenic |
| ATTGAGAAGGGACTGTGTTC+TGG | 0.430812 | 4.3:-32362695 | MS.gene003435:CDS |
| CTGAATGTTGCTGGACCTAT+GGG | 0.440731 | 4.3:-32364382 | MS.gene003435:CDS |
| CCAGTAATGGGATCAATACT+AGG | 0.442643 | 4.3:+32366250 | None:intergenic |
| TAAAACTTCACCTTACTTGA+GGG | 0.447002 | 4.3:-32364329 | MS.gene003435:CDS |
| TCTTGAAGATTCCTTAGATC+AGG | 0.447271 | 4.3:+32363422 | None:intergenic |
| TTGTCTGAGGTGGAAGATAT+CGG | 0.467432 | 4.3:+32366525 | None:intergenic |
| AGGTTTCTTTCGCAGAGAAT+GGG | 0.474474 | 4.3:+32366635 | None:intergenic |
| CTAAAACTTCACCTTACTTG+AGG | 0.478099 | 4.3:-32364330 | MS.gene003435:CDS |
| TCAATACTAGGCTGTGCCTC+TGG | 0.481355 | 4.3:+32366262 | None:intergenic |
| TATGGCAGAGAGTGCGAAGT+TGG | 0.494831 | 4.3:+32366591 | None:intergenic |
| ATGTAAGAGTAGGTCCTTGT+GGG | 0.499307 | 4.3:+32364296 | None:intergenic |
| GGAGATATTAGAAGTATATC+GGG | 0.501028 | 4.3:+32366656 | None:intergenic |
| GCTGTCAGACTTCAAGAGAT+TGG | 0.502359 | 4.3:-32362746 | MS.gene003435:CDS |
| TCTCTCTCCGTCTCCTGCGC+CGG | 0.503479 | 4.3:-32366557 | MS.gene003435:CDS |
| ACTAGTTGAAGAGTCATCCT+TGG | 0.508593 | 4.3:+32362722 | None:intergenic |
| AGAGAGACGACGGTGAGTTA+TGG | 0.521251 | 4.3:+32366573 | None:intergenic |
| GTAGTTGCAACCCTCAAGTA+AGG | 0.522894 | 4.3:+32364319 | None:intergenic |
| AAGCTTACCATGGTTGTCTG+AGG | 0.549979 | 4.3:+32366512 | None:intergenic |
| AGAAAGTGAAGCAGATGATG+AGG | 0.552650 | 4.3:-32362828 | MS.gene003435:CDS |
| TTATACTGCTCTCAGTCTCA+AGG | 0.554961 | 4.3:-32366134 | MS.gene003435:intron |
| TCAGTGGTGATTTACCTCTA+CGG | 0.556377 | 4.3:-32363723 | MS.gene003435:CDS |
| TATTAGAAGTATATCGGGCC+GGG | 0.558094 | 4.3:+32366661 | None:intergenic |
| TCAACTAGTTAGGATTGAGA+AGG | 0.559747 | 4.3:-32362708 | MS.gene003435:CDS |
| AGGAAATGTGTGACACCCAT+AGG | 0.559784 | 4.3:+32364367 | None:intergenic |
| TTAAACTCTCGTCTTGCCAA+AGG | 0.560394 | 4.3:-32363565 | MS.gene003435:CDS |
| TAAGATACAAGAGTATGCAT+TGG | 0.562852 | 4.3:-32364272 | MS.gene003435:CDS |
| GTGCTTTCTGGATTTGTCAG+TGG | 0.563201 | 4.3:-32363739 | MS.gene003435:CDS |
| CTTACCATGGTTGTCTGAGG+TGG | 0.563723 | 4.3:+32366515 | None:intergenic |
| TCGGAGATTAACACCGGCGC+AGG | 0.563792 | 4.3:+32366544 | None:intergenic |
| ATATTAGAAGTATATCGGGC+CGG | 0.565994 | 4.3:+32366660 | None:intergenic |
| ATTAACACCGGCGCAGGAGA+CGG | 0.572479 | 4.3:+32366550 | None:intergenic |
| AGCAGATGATGAGGCAGCAA+CGG | 0.580635 | 4.3:-32362819 | MS.gene003435:CDS |
| CAAATCCATGAAACATGACC+CGG | 0.583582 | 4.3:-32366679 | None:intergenic |
| ATGTTCGTTGTAAGCCGTAG+AGG | 0.589274 | 4.3:+32363709 | None:intergenic |
| TGTATCTTAAATGTAAGAGT+AGG | 0.599693 | 4.3:+32364286 | None:intergenic |
| CAACTAGTTAGGATTGAGAA+GGG | 0.618382 | 4.3:-32362707 | MS.gene003435:CDS |
| ATGTACCAAATTCGTCGAAG+AGG | 0.628027 | 4.3:+32362666 | None:intergenic |
| AATGTAAGAGTAGGTCCTTG+TGG | 0.629934 | 4.3:+32364295 | None:intergenic |
| GACTTCAAGAGATTGGTCCA+AGG | 0.646494 | 4.3:-32362739 | MS.gene003435:CDS |
| AGGGTTGCAACTACCCCACA+AGG | 0.673136 | 4.3:-32364310 | MS.gene003435:CDS |
| AAAAGATCTTTAGGGCATCG+AGG | 0.675531 | 4.3:+32364220 | None:intergenic |
| AAGATATCGGAGATTAACAC+CGG | 0.677716 | 4.3:+32366538 | None:intergenic |
| CAGGAGACGGAGAGAGACGA+CGG | 0.683622 | 4.3:+32366563 | None:intergenic |
| GAAGAATAACAAGCAACCAG+AGG | 0.684893 | 4.3:-32366278 | MS.gene003435:CDS |
| TCTTCCACCTCAGACAACCA+TGG | 0.697883 | 4.3:-32366519 | MS.gene003435:intron |
| TGTAAGAGTAGGTCCTTGTG+GGG | 0.701027 | 4.3:+32364297 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATAAAATAAAGTTCAA+CGG | - | chr4.3:32363412-32363431 | MS.gene003435:CDS | 10.0% |
| !!! | AATTTTTAAAAAGATCTTTA+GGG | + | chr4.3:32365018-32365037 | None:intergenic | 10.0% |
| !! | ATTAATAATAATGCAAACAA+TGG | + | chr4.3:32366134-32366153 | None:intergenic | 15.0% |
| !! | TTGATGTGATAAAATTTAAT+AGG | + | chr4.3:32365237-32365256 | None:intergenic | 15.0% |
| !! | TTGTTTGCATTATTATTAAT+TGG | - | chr4.3:32366134-32366153 | MS.gene003435:intron | 15.0% |
| !!! | GAATTTTTAAAAAGATCTTT+AGG | + | chr4.3:32365019-32365038 | None:intergenic | 15.0% |
| !!! | TTGGATTTTTTTTTTTTGAT+GGG | + | chr4.3:32362828-32362847 | None:intergenic | 15.0% |
| !! | AAATAAGCTAAAAACAACTT+AGG | - | chr4.3:32363487-32363506 | MS.gene003435:CDS | 20.0% |
| !! | AAATGAAGTAAAATTACTTG+AGG | + | chr4.3:32366602-32366621 | None:intergenic | 20.0% |
| !! | AATAAGCTAAAAACAACTTA+GGG | - | chr4.3:32363488-32363507 | MS.gene003435:CDS | 20.0% |
| !! | TAAGAAATTAGGAAAAATGA+AGG | + | chr4.3:32364562-32364581 | None:intergenic | 20.0% |
| !! | TATTCAAATCTTAAACTCTA+TGG | + | chr4.3:32364639-32364658 | None:intergenic | 20.0% |
| !! | TATTGGCAAACTAATTAAAT+GGG | - | chr4.3:32364595-32364614 | MS.gene003435:intron | 20.0% |
| !! | TCTAGTGATAGTATTTAAAT+GGG | - | chr4.3:32365334-32365353 | MS.gene003435:intron | 20.0% |
| !! | TTCTAGTGATAGTATTTAAA+TGG | - | chr4.3:32365333-32365352 | MS.gene003435:intron | 20.0% |
| !! | TTCTCTCAATTTAAGAAATT+AGG | + | chr4.3:32364573-32364592 | None:intergenic | 20.0% |
| !!! | AAAAGTTTTGTTTTTTCAAG+AGG | - | chr4.3:32363013-32363032 | MS.gene003435:intron | 20.0% |
| !!! | AAAGTTTTGTTTTTTCAAGA+GGG | - | chr4.3:32363014-32363033 | MS.gene003435:intron | 20.0% |
| !!! | AACATTTTAATTTAAGCGAT+TGG | - | chr4.3:32363368-32363387 | MS.gene003435:intron | 20.0% |
| !!! | CTTGAAAAAACAAAACTTTT+TGG | + | chr4.3:32363013-32363032 | None:intergenic | 20.0% |
| !!! | GTTGGATTTTTTTTTTTTGA+TGG | + | chr4.3:32362829-32362848 | None:intergenic | 20.0% |
| !!! | TAGAGTTTAAGATTTGAATA+CGG | - | chr4.3:32364639-32364658 | MS.gene003435:intron | 20.0% |
| !!! | TCTCAACTAAAATAATTTTC+TGG | - | chr4.3:32363874-32363893 | MS.gene003435:intron | 20.0% |
| !!! | TCTTTTTAAAAATTCTGCAT+TGG | - | chr4.3:32365024-32365043 | MS.gene003435:intron | 20.0% |
| !!! | TTATTCTTCTTGATAATAAC+AGG | + | chr4.3:32362938-32362957 | None:intergenic | 20.0% |
| !!! | TTCTGTAAAACAATGTTTTT+TGG | - | chr4.3:32364234-32364253 | MS.gene003435:CDS | 20.0% |
| !!! | TTTTAGTTTTTGACAATATG+AGG | + | chr4.3:32364883-32364902 | None:intergenic | 20.0% |
| ! | ACTTTATGAAGGATTAACAT+GGG | + | chr4.3:32365956-32365975 | None:intergenic | 25.0% |
| ! | AGATCATAATTCATACATAG+TGG | + | chr4.3:32365412-32365431 | None:intergenic | 25.0% |
| ! | AGCTGATAATAACACAAAAA+TGG | + | chr4.3:32365292-32365311 | None:intergenic | 25.0% |
| ! | ATCCAACAACATTAAAAAGT+TGG | + | chr4.3:32362847-32362866 | None:intergenic | 25.0% |
| ! | ATTAGTTAAGACTGCTAAAT+GGG | - | chr4.3:32365208-32365227 | MS.gene003435:intron | 25.0% |
| ! | CAAATTTCAATTCTTCAACT+GGG | - | chr4.3:32362783-32362802 | MS.gene003435:CDS | 25.0% |
| ! | CAATTGTTGGAAAAATATTC+TGG | + | chr4.3:32365547-32365566 | None:intergenic | 25.0% |
| ! | CTAGTGATAGTATTTAAATG+GGG | - | chr4.3:32365335-32365354 | MS.gene003435:intron | 25.0% |
| ! | CTATTGGCAAACTAATTAAA+TGG | - | chr4.3:32364594-32364613 | MS.gene003435:intron | 25.0% |
| ! | CTTAAATTGAGAGAATCTAT+TGG | - | chr4.3:32364578-32364597 | MS.gene003435:intron | 25.0% |
| ! | CTTATTTCAACATAAATGAG+AGG | - | chr4.3:32364451-32364470 | MS.gene003435:intron | 25.0% |
| ! | GAAGAACAACAAACATAAAA+AGG | + | chr4.3:32363129-32363148 | None:intergenic | 25.0% |
| ! | GATAAGCTTAAATAAGACAA+TGG | - | chr4.3:32363555-32363574 | MS.gene003435:CDS | 25.0% |
| ! | GTTATAAACTAATCCAAACT+AGG | + | chr4.3:32363843-32363862 | None:intergenic | 25.0% |
| ! | TACTTTATGAAGGATTAACA+TGG | + | chr4.3:32365957-32365976 | None:intergenic | 25.0% |
| ! | TAGGACAATCAATCTAAATA+AGG | + | chr4.3:32364321-32364340 | None:intergenic | 25.0% |
| ! | TAGTTTAGTTATTTATGAGC+TGG | - | chr4.3:32364140-32364159 | MS.gene003435:intron | 25.0% |
| ! | TATTAAATCTAACTCGTAGA+TGG | - | chr4.3:32364163-32364182 | MS.gene003435:intron | 25.0% |
| ! | TCAAATTTCAATTCTTCAAC+TGG | - | chr4.3:32362782-32362801 | MS.gene003435:CDS | 25.0% |
| ! | TCAATTAGATTACAACCTAT+AGG | - | chr4.3:32365739-32365758 | MS.gene003435:intron | 25.0% |
| ! | TGTATCTTAAATGTAAGAGT+AGG | + | chr4.3:32364944-32364963 | None:intergenic | 25.0% |
| ! | TGTTGTAAAACAATGTTGTT+TGG | - | chr4.3:32363737-32363756 | MS.gene003435:CDS | 25.0% |
| ! | TTAAATAAGACAATGGAAAC+AGG | - | chr4.3:32363562-32363581 | MS.gene003435:CDS | 25.0% |
| !! | AATTTCAGGGATTTTTGTTA+AGG | - | chr4.3:32364285-32364304 | MS.gene003435:CDS | 25.0% |
| !! | ATCCAACTTTTTAATGTTGT+TGG | - | chr4.3:32362842-32362861 | MS.gene003435:CDS | 25.0% |
| !! | ATTACTTGAGGAAAAAGTAT+AGG | + | chr4.3:32366590-32366609 | None:intergenic | 25.0% |
| !! | TAAAAAAGAAGCATAAGCAA+TGG | + | chr4.3:32366330-32366349 | None:intergenic | 25.0% |
| !!! | CATCATCTTCTCTTTTTTTT+TGG | - | chr4.3:32366050-32366069 | MS.gene003435:intron | 25.0% |
| !!! | TTTTCACTTGTGATTTGTAA+GGG | - | chr4.3:32366363-32366382 | MS.gene003435:intron | 25.0% |
| !!! | TTTTTCACTTGTGATTTGTA+AGG | - | chr4.3:32366362-32366381 | MS.gene003435:intron | 25.0% |
| AAACAGAGGAAGAATCAAAA+AGG | - | chr4.3:32362902-32362921 | MS.gene003435:intron | 30.0% | |
| AAACTGTTTATCAGCTATCA+TGG | - | chr4.3:32363222-32363241 | MS.gene003435:intron | 30.0% | |
| AAATGAGCAAGTATCTTACT+TGG | + | chr4.3:32365848-32365867 | None:intergenic | 30.0% | |
| AACAGAGGAAGAATCAAAAA+GGG | - | chr4.3:32362903-32362922 | MS.gene003435:intron | 30.0% | |
| AATGCAAATGAGATACATCT+AGG | + | chr4.3:32363589-32363608 | None:intergenic | 30.0% | |
| AATTAAGCAACACAATCCTT+TGG | + | chr4.3:32365681-32365700 | None:intergenic | 30.0% | |
| ACTCTAAATTAACAAGAGAG+TGG | + | chr4.3:32362752-32362771 | None:intergenic | 30.0% | |
| CATTAGTTAAGACTGCTAAA+TGG | - | chr4.3:32365207-32365226 | MS.gene003435:intron | 30.0% | |
| CTACGAGTTAGATTTAATAC+AGG | + | chr4.3:32363665-32363684 | None:intergenic | 30.0% | |
| CTGTATTAAATCTAACTCGT+AGG | - | chr4.3:32363663-32363682 | MS.gene003435:intron | 30.0% | |
| GACAATGAAATGTTATGTTG+TGG | - | chr4.3:32364113-32364132 | MS.gene003435:intron | 30.0% | |
| GTTTACTTCTGAATGACTTT+GGG | + | chr4.3:32366280-32366299 | None:intergenic | 30.0% | |
| TAAAACTTCACCTTACTTGA+GGG | - | chr4.3:32364898-32364917 | MS.gene003435:intron | 30.0% | |
| TAGGACAATCAATCTAAACA+AGG | + | chr4.3:32363824-32363843 | None:intergenic | 30.0% | |
| TATATCTTCCTTTCTCAATC+AGG | + | chr4.3:32366183-32366202 | None:intergenic | 30.0% | |
| TATTAAATCTAACTCGTAGG+TGG | - | chr4.3:32363666-32363685 | MS.gene003435:intron | 30.0% | |
| TCACGTTAGATAACTACTAA+TGG | + | chr4.3:32365440-32365459 | None:intergenic | 30.0% | |
| TGTTTACTTCTGAATGACTT+TGG | + | chr4.3:32366281-32366300 | None:intergenic | 30.0% | |
| TTAGATTGATTGTCCTAGTT+TGG | - | chr4.3:32363827-32363846 | MS.gene003435:intron | 30.0% | |
| TTGTCACATGTGATTGAAAT+CGG | + | chr4.3:32364742-32364761 | None:intergenic | 30.0% | |
| ! | ATTATTTTCGTAAGCTATCC+AGG | + | chr4.3:32363967-32363986 | None:intergenic | 30.0% |
| ! | CTATTTTGCAGGAAAAGAAA+CGG | - | chr4.3:32364804-32364823 | MS.gene003435:intron | 30.0% |
| ! | GATTTCAGGGATTTTTGTTA+AGG | - | chr4.3:32363788-32363807 | MS.gene003435:intron | 30.0% |
| ! | GCTTGCTAAAAACAACTTAT+AGG | - | chr4.3:32363248-32363267 | MS.gene003435:intron | 30.0% |
| ! | GGAGATATTAGAAGTATATC+GGG | + | chr4.3:32362574-32362593 | None:intergenic | 30.0% |
| ! | GGGAGATATTAGAAGTATAT+CGG | + | chr4.3:32362575-32362594 | None:intergenic | 30.0% |
| ! | TAAGATACAAGAGTATGCAT+TGG | - | chr4.3:32364955-32364974 | MS.gene003435:intron | 30.0% |
| ! | TGAGTGCTGTATTAATTTCA+GGG | - | chr4.3:32364272-32364291 | MS.gene003435:CDS | 30.0% |
| ! | TGTTTGGATTAATGGGTAAT+GGG | - | chr4.3:32366100-32366119 | MS.gene003435:intron | 30.0% |
| ! | TTAACCTTTTATTCCTATCG+CGG | - | chr4.3:32365165-32365184 | MS.gene003435:intron | 30.0% |
| ! | TTATTTTCGTAAGCTATCCA+GGG | + | chr4.3:32363473-32363492 | None:intergenic | 30.0% |
| ! | TTCATGAGTTTGGAGATTTT+TGG | - | chr4.3:32363700-32363719 | MS.gene003435:CDS | 30.0% |
| !! | ACAGTTTTAACGTCAATTGT+TGG | + | chr4.3:32365560-32365579 | None:intergenic | 30.0% |
| !! | TTAAGGTGTTTTCATGAGTT+TGG | - | chr4.3:32364187-32364206 | MS.gene003435:intron | 30.0% |
| !! | TTTTGTTGTGAATGAAACAG+AGG | - | chr4.3:32362888-32362907 | MS.gene003435:intron | 30.0% |
| !!! | AGACTAAGCTCATTGATTTT+CGG | - | chr4.3:32365710-32365729 | MS.gene003435:intron | 30.0% |
| !!! | TTTTTTTTGGTTGTAACTCG+TGG | - | chr4.3:32366063-32366082 | MS.gene003435:intron | 30.0% |
| AAATGAGGTTAAGCTTACCA+TGG | + | chr4.3:32362728-32362747 | None:intergenic | 35.0% | |
| AACAGCTTCAAATGGATCTT+AGG | - | chr4.3:32363056-32363075 | MS.gene003435:intron | 35.0% | |
| AAGATATCGGAGATTAACAC+CGG | + | chr4.3:32362692-32362711 | None:intergenic | 35.0% | |
| AATATCAGCCTGATTGAGAA+AGG | - | chr4.3:32366172-32366191 | MS.gene003435:CDS | 35.0% | |
| AGAGGTAATTTGAATGAGAG+AGG | - | chr4.3:32364406-32364425 | MS.gene003435:CDS | 35.0% | |
| AGTCTTAACTGATTGCAAAC+GGG | + | chr4.3:32365368-32365387 | None:intergenic | 35.0% | |
| CAACATAAATGAGAGGCTAT+TGG | - | chr4.3:32364458-32364477 | MS.gene003435:intron | 35.0% | |
| CAACTAGTTAGGATTGAGAA+GGG | - | chr4.3:32366520-32366539 | MS.gene003435:CDS | 35.0% | |
| CAGACTTGCATACTTTATGA+AGG | + | chr4.3:32365967-32365986 | None:intergenic | 35.0% | |
| CAGTCTTAACTGATTGCAAA+CGG | + | chr4.3:32365369-32365388 | None:intergenic | 35.0% | |
| CTAAAACTTCACCTTACTTG+AGG | - | chr4.3:32364897-32364916 | MS.gene003435:intron | 35.0% | |
| CTACAAGAGTCAATTTCTCT+GGG | + | chr4.3:32364682-32364701 | None:intergenic | 35.0% | |
| CTTGAGAGAACTTATGGAAA+GGG | + | chr4.3:32363285-32363304 | None:intergenic | 35.0% | |
| GAGCTTATGACATCTCTATA+AGG | + | chr4.3:32364000-32364019 | None:intergenic | 35.0% | |
| GATTTCAATCACATGTGACA+AGG | - | chr4.3:32364741-32364760 | MS.gene003435:intron | 35.0% | |
| GGTATCTTCTTTCCAGTAAT+GGG | + | chr4.3:32362992-32363011 | None:intergenic | 35.0% | |
| GTAGTTATCTAACGTGATGT+TGG | - | chr4.3:32365443-32365462 | MS.gene003435:intron | 35.0% | |
| GTGACTTTGTCTAGTAATCT+TGG | - | chr4.3:32366430-32366449 | MS.gene003435:intron | 35.0% | |
| GTTTAACCTGAAATATACCG+CGG | + | chr4.3:32365648-32365667 | None:intergenic | 35.0% | |
| TAACAAGAGAGTGGTAAATG+AGG | + | chr4.3:32362743-32362762 | None:intergenic | 35.0% | |
| TAATGTTGTTGGATTGAGCT+TGG | - | chr4.3:32362853-32362872 | MS.gene003435:intron | 35.0% | |
| TATTGAGAAGCTTGTCATAC+TGG | - | chr4.3:32364536-32364555 | MS.gene003435:intron | 35.0% | |
| TCAAATAAGCCAGTTGAAAC+AGG | - | chr4.3:32364058-32364077 | MS.gene003435:intron | 35.0% | |
| TCAACTAGTTAGGATTGAGA+AGG | - | chr4.3:32366519-32366538 | MS.gene003435:intron | 35.0% | |
| TCCTCTTAAACAGCTTCAAA+TGG | - | chr4.3:32363048-32363067 | MS.gene003435:intron | 35.0% | |
| TCTTGAAGATTCCTTAGATC+AGG | + | chr4.3:32365808-32365827 | None:intergenic | 35.0% | |
| TGCAATGCTAATGACAGAAA+AGG | + | chr4.3:32365933-32365952 | None:intergenic | 35.0% | |
| TGCTAATGAAATGCGAGAAA+GGG | - | chr4.3:32365126-32365145 | MS.gene003435:intron | 35.0% | |
| TGGTATCTTCTTTCCAGTAA+TGG | + | chr4.3:32362993-32363012 | None:intergenic | 35.0% | |
| TTGCTAATGAAATGCGAGAA+AGG | - | chr4.3:32365125-32365144 | MS.gene003435:intron | 35.0% | |
| ! | AAGGGTGTGTTTGGATTAAT+GGG | - | chr4.3:32366093-32366112 | MS.gene003435:intron | 35.0% |
| ! | AGACAGTGAAATGTTTGTTG+TGG | - | chr4.3:32363616-32363635 | MS.gene003435:intron | 35.0% |
| ! | ATATTAGAAGTATATCGGGC+CGG | + | chr4.3:32362570-32362589 | None:intergenic | 35.0% |
| ! | CAGAGAAATTGACTCTTGTA+GGG | - | chr4.3:32364681-32364700 | MS.gene003435:intron | 35.0% |
| ! | CGTTTCTTTTCCTGCAAAAT+AGG | + | chr4.3:32364806-32364825 | None:intergenic | 35.0% |
| ! | CTATCATCTTTTACTGTCTC+AGG | - | chr4.3:32366652-32366671 | MS.gene003435:CDS | 35.0% |
| ! | GTAACTCGTGGTTTTTCTAA+GGG | - | chr4.3:32366075-32366094 | MS.gene003435:intron | 35.0% |
| ! | GTGAGTGCTGTATTAATTTC+AGG | - | chr4.3:32364271-32364290 | MS.gene003435:CDS | 35.0% |
| ! | GTGTTTGGATTAATGGGTAA+TGG | - | chr4.3:32366099-32366118 | MS.gene003435:intron | 35.0% |
| ! | TAAGGGTGTGTTTGGATTAA+TGG | - | chr4.3:32366092-32366111 | MS.gene003435:intron | 35.0% |
| ! | TCCATTTGAAGCTGTTTAAG+AGG | + | chr4.3:32363052-32363071 | None:intergenic | 35.0% |
| ! | TGTAACTCGTGGTTTTTCTA+AGG | - | chr4.3:32366074-32366093 | MS.gene003435:intron | 35.0% |
| ! | TTTTACCAGATTGTGCTTTC+TGG | - | chr4.3:32365476-32365495 | MS.gene003435:intron | 35.0% |
| !! | AAATGAGCTATGGCTTTGTT+TGG | - | chr4.3:32363342-32363361 | MS.gene003435:intron | 35.0% |
| !! | ATTCGCTTTGAAACACCTAT+AGG | + | chr4.3:32365757-32365776 | None:intergenic | 35.0% |
| !! | CTTATTTTCGTAAGCTATCC+AGG | + | chr4.3:32363474-32363493 | None:intergenic | 35.0% |
| !! | TCTAACTCGTAGATGGATTA+AGG | - | chr4.3:32364170-32364189 | MS.gene003435:intron | 35.0% |
| !! | TGAGTGCTGTATTGATTTCA+GGG | - | chr4.3:32363775-32363794 | MS.gene003435:intron | 35.0% |
| !! | TTCATGAGTTTGGAGTCTTT+TGG | - | chr4.3:32364197-32364216 | MS.gene003435:intron | 35.0% |
| !!! | TTCTGGTTTTTACTCTCGAA+AGG | - | chr4.3:32363891-32363910 | MS.gene003435:intron | 35.0% |
| AATGTAAGAGTAGGTCCTTG+TGG | + | chr4.3:32364935-32364954 | None:intergenic | 40.0% | |
| ACACAAGTGCTTATGTGAGT+AGG | - | chr4.3:32363312-32363331 | MS.gene003435:intron | 40.0% | |
| ACTAGTTGAAGAGTCATCCT+TGG | + | chr4.3:32366508-32366527 | None:intergenic | 40.0% | |
| AGAAAGTGAAGCAGATGATG+AGG | - | chr4.3:32366399-32366418 | MS.gene003435:intron | 40.0% | |
| AGACAGCTTGAGAGAACTTA+TGG | + | chr4.3:32363291-32363310 | None:intergenic | 40.0% | |
| AGAGACTTTCTGAATGTTGC+TGG | - | chr4.3:32364836-32364855 | MS.gene003435:intron | 40.0% | |
| AGGTAAGCTCAAATGAGCTA+TGG | - | chr4.3:32363332-32363351 | MS.gene003435:intron | 40.0% | |
| AGGTTTCTTTCGCAGAGAAT+GGG | + | chr4.3:32362595-32362614 | None:intergenic | 40.0% | |
| ATGTAAGAGTAGGTCCTTGT+GGG | + | chr4.3:32364934-32364953 | None:intergenic | 40.0% | |
| CCTACAAGAGTCAATTTCTC+TGG | + | chr4.3:32364683-32364702 | None:intergenic | 40.0% | |
| CTATCGCGGTGAAGAATTAA+GGG | - | chr4.3:32365179-32365198 | MS.gene003435:intron | 40.0% | |
| GAAGAATAACAAGCAACCAG+AGG | - | chr4.3:32362949-32362968 | MS.gene003435:intron | 40.0% | |
| GCTTGAGAGAACTTATGGAA+AGG | + | chr4.3:32363286-32363305 | None:intergenic | 40.0% | |
| GGATGACTCTTCAACTAGTT+AGG | - | chr4.3:32366509-32366528 | MS.gene003435:intron | 40.0% | |
| TAGGTTTCTTTCGCAGAGAA+TGG | + | chr4.3:32362596-32362615 | None:intergenic | 40.0% | |
| TCAGTGGTGATTTACCTCTA+CGG | - | chr4.3:32365504-32365523 | MS.gene003435:intron | 40.0% | |
| TCCTTAGATCAGGAACTTGA+TGG | + | chr4.3:32365798-32365817 | None:intergenic | 40.0% | |
| TGAAGCTGTTTAAGAGGAAC+AGG | + | chr4.3:32363046-32363065 | None:intergenic | 40.0% | |
| TTAAACTCTCGTCTTGCCAA+AGG | - | chr4.3:32365662-32365681 | MS.gene003435:intron | 40.0% | |
| TTAAGGTGGCTTCATGAGTT+TGG | - | chr4.3:32363690-32363709 | MS.gene003435:CDS | 40.0% | |
| TTATACTGCTCTCAGTCTCA+AGG | - | chr4.3:32363093-32363112 | MS.gene003435:intron | 40.0% | |
| TTCAATCACATGTGACAAGG+TGG | - | chr4.3:32364744-32364763 | MS.gene003435:intron | 40.0% | |
| TTCACCGCGATAGGAATAAA+AGG | + | chr4.3:32365172-32365191 | None:intergenic | 40.0% | |
| TTGAGACTGAGAGCAGTATA+AGG | + | chr4.3:32363094-32363113 | None:intergenic | 40.0% | |
| ! | CAAATCCAGAAAGCACAATC+TGG | + | chr4.3:32365484-32365503 | None:intergenic | 40.0% |
| ! | CCAGAGAAATTGACTCTTGT+AGG | - | chr4.3:32364680-32364699 | MS.gene003435:intron | 40.0% |
| ! | CCAGTAATGGGATCAATACT+AGG | + | chr4.3:32362980-32362999 | None:intergenic | 40.0% |
| ! | TATTAGAAGTATATCGGGCC+GGG | + | chr4.3:32362569-32362588 | None:intergenic | 40.0% |
| ! | TCTCATGTCTCCTATTTTGC+AGG | - | chr4.3:32364793-32364812 | MS.gene003435:intron | 40.0% |
| ! | TTGTCTGAGGTGGAAGATAT+CGG | + | chr4.3:32362705-32362724 | None:intergenic | 40.0% |
| !! | AAAAGATCTTTAGGGCATCG+AGG | + | chr4.3:32365010-32365029 | None:intergenic | 40.0% |
| !! | CCTAGTATTGATCCCATTAC+TGG | - | chr4.3:32362977-32362996 | MS.gene003435:intron | 40.0% |
| !! | GGTTTTTCTAAGGGTGTGTT+TGG | - | chr4.3:32366084-32366103 | MS.gene003435:intron | 40.0% |
| !! | GTGAGTGCTGTATTGATTTC+AGG | - | chr4.3:32363774-32363793 | MS.gene003435:intron | 40.0% |
| !! | TCTAACTCGTAGGTGGATTA+AGG | - | chr4.3:32363673-32363692 | MS.gene003435:CDS | 40.0% |
| !! | TGATTTGTAAGGGCTGGTTA+TGG | - | chr4.3:32366373-32366392 | MS.gene003435:intron | 40.0% |
| !!! | TTCTGGTTTTTACTCTCGAG+AGG | - | chr4.3:32364388-32364407 | MS.gene003435:CDS | 40.0% |
| AAGCTTACCATGGTTGTCTG+AGG | + | chr4.3:32362718-32362737 | None:intergenic | 45.0% | |
| AGCCAGTTGAAACAGGTCTT+AGG | - | chr4.3:32364065-32364084 | MS.gene003435:intron | 45.0% | |
| AGGAAATGTGTGACACCCAT+AGG | + | chr4.3:32364863-32364882 | None:intergenic | 45.0% | |
| ATGTTCGTTGTAAGCCGTAG+AGG | + | chr4.3:32365521-32365540 | None:intergenic | 45.0% | |
| ATTGAGAAGGGACTGTGTTC+TGG | - | chr4.3:32366532-32366551 | MS.gene003435:CDS | 45.0% | |
| CACCTAAGACCTGTTTCAAC+TGG | + | chr4.3:32364070-32364089 | None:intergenic | 45.0% | |
| CCTATCGCGGTGAAGAATTA+AGG | - | chr4.3:32365178-32365197 | MS.gene003435:intron | 45.0% | |
| CCTTAATTCTTCACCGCGAT+AGG | + | chr4.3:32365181-32365200 | None:intergenic | 45.0% | |
| CTAATGCCGCGGTATATTTC+AGG | - | chr4.3:32365639-32365658 | MS.gene003435:intron | 45.0% | |
| CTGAAATATACCGCGGCATT+AGG | + | chr4.3:32365641-32365660 | None:intergenic | 45.0% | |
| CTGAATGTTGCTGGACCTAT+GGG | - | chr4.3:32364845-32364864 | MS.gene003435:intron | 45.0% | |
| GCCATCAAGTTCCTGATCTA+AGG | - | chr4.3:32365794-32365813 | MS.gene003435:intron | 45.0% | |
| GCTGTCAGACTTCAAGAGAT+TGG | - | chr4.3:32366481-32366500 | MS.gene003435:intron | 45.0% | |
| GTAGTTGCAACCCTCAAGTA+AGG | + | chr4.3:32364911-32364930 | None:intergenic | 45.0% | |
| GTGCTTTCTGGATTTGTCAG+TGG | - | chr4.3:32365488-32365507 | MS.gene003435:intron | 45.0% | |
| TCTGAATGTTGCTGGACCTA+TGG | - | chr4.3:32364844-32364863 | MS.gene003435:intron | 45.0% | |
| TGTAAGAGTAGGTCCTTGTG+GGG | + | chr4.3:32364933-32364952 | None:intergenic | 45.0% | |
| TTACGGCTGCAACTAGTGTT+AGG | + | chr4.3:32362615-32362634 | None:intergenic | 45.0% | |
| ! | ACTATTTTCGTAAGCTGCCC+TGG | - | chr4.3:32363946-32363965 | MS.gene003435:intron | 45.0% |
| ! | ACTGTTTTCGTAAGCTGTCC+TGG | - | chr4.3:32363453-32363472 | MS.gene003435:CDS | 45.0% |
| ! | CACTTGTGATTTGTAAGGGC+TGG | - | chr4.3:32366367-32366386 | MS.gene003435:intron | 45.0% |
| ! | GACTTCAAGAGATTGGTCCA+AGG | - | chr4.3:32366488-32366507 | MS.gene003435:intron | 45.0% |
| ! | GAGAGTGCGAAGTTGGTTTA+CGG | + | chr4.3:32362632-32362651 | None:intergenic | 45.0% |
| !! | AACTCGTAGGTGGATTAAGG+TGG | - | chr4.3:32363676-32363695 | MS.gene003435:CDS | 45.0% |
| !! | GGATTAATGGGTAATGGGAC+AGG | - | chr4.3:32366105-32366124 | MS.gene003435:intron | 45.0% |
| AAGTCGATCTCCTAATGCCG+CGG | - | chr4.3:32365628-32365647 | MS.gene003435:intron | 50.0% | |
| AGAGAGACGACGGTGAGTTA+TGG | + | chr4.3:32362657-32362676 | None:intergenic | 50.0% | |
| AGCAGATGATGAGGCAGCAA+CGG | - | chr4.3:32366408-32366427 | MS.gene003435:intron | 50.0% | |
| CTTACCATGGTTGTCTGAGG+TGG | + | chr4.3:32362715-32362734 | None:intergenic | 50.0% | |
| TCAATACTAGGCTGTGCCTC+TGG | + | chr4.3:32362968-32362987 | None:intergenic | 50.0% | |
| TCTTCCACCTCAGACAACCA+TGG | - | chr4.3:32362708-32362727 | MS.gene003435:CDS | 50.0% | |
| ! | TATGGCAGAGAGTGCGAAGT+TGG | + | chr4.3:32362639-32362658 | None:intergenic | 50.0% |
| AGGGTTGCAACTACCCCACA+AGG | - | chr4.3:32364917-32364936 | MS.gene003435:intron | 55.0% | |
| ATTAACACCGGCGCAGGAGA+CGG | + | chr4.3:32362680-32362699 | None:intergenic | 55.0% | |
| CAGGAGACGGAGAGAGACGA+CGG | + | chr4.3:32362667-32362686 | None:intergenic | 60.0% | |
| TCGGAGATTAACACCGGCGC+AGG | + | chr4.3:32362686-32362705 | None:intergenic | 60.0% | |
| TCTCTCTCCGTCTCCTGCGC+CGG | - | chr4.3:32362670-32362689 | MS.gene003435:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 32362562 | 32366687 | 32362562 | ID=MS.gene003435 |
| chr4.3 | mRNA | 32362562 | 32366687 | 32362562 | ID=MS.gene003435.t1;Parent=MS.gene003435 |
| chr4.3 | exon | 32366520 | 32366687 | 32366520 | ID=MS.gene003435.t1.exon1;Parent=MS.gene003435.t1 |
| chr4.3 | CDS | 32366520 | 32366687 | 32366520 | ID=cds.MS.gene003435.t1;Parent=MS.gene003435.t1 |
| chr4.3 | exon | 32366135 | 32366341 | 32366135 | ID=MS.gene003435.t1.exon2;Parent=MS.gene003435.t1 |
| chr4.3 | CDS | 32366135 | 32366341 | 32366135 | ID=cds.MS.gene003435.t1;Parent=MS.gene003435.t1 |
| chr4.3 | exon | 32364204 | 32364434 | 32364204 | ID=MS.gene003435.t1.exon3;Parent=MS.gene003435.t1 |
| chr4.3 | CDS | 32364204 | 32364434 | 32364204 | ID=cds.MS.gene003435.t1;Parent=MS.gene003435.t1 |
| chr4.3 | exon | 32363672 | 32363764 | 32363672 | ID=MS.gene003435.t1.exon4;Parent=MS.gene003435.t1 |
| chr4.3 | CDS | 32363672 | 32363764 | 32363672 | ID=cds.MS.gene003435.t1;Parent=MS.gene003435.t1 |
| chr4.3 | exon | 32363401 | 32363588 | 32363401 | ID=MS.gene003435.t1.exon5;Parent=MS.gene003435.t1 |
| chr4.3 | CDS | 32363401 | 32363588 | 32363401 | ID=cds.MS.gene003435.t1;Parent=MS.gene003435.t1 |
| chr4.3 | exon | 32362672 | 32362865 | 32362672 | ID=MS.gene003435.t1.exon6;Parent=MS.gene003435.t1 |
| chr4.3 | CDS | 32362672 | 32362865 | 32362672 | ID=cds.MS.gene003435.t1;Parent=MS.gene003435.t1 |
| chr4.3 | exon | 32362562 | 32362575 | 32362562 | ID=MS.gene003435.t1.exon7;Parent=MS.gene003435.t1 |
| chr4.3 | CDS | 32362562 | 32362575 | 32362562 | ID=cds.MS.gene003435.t1;Parent=MS.gene003435.t1 |
| Gene Sequence |
| Protein sequence |
