AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene032057

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene032057.t1 MTR_8g007515 77.419 558 122 4 6 560 4 560 0.0 900
MS.gene032057.t1 MTR_2g082060 75.492 559 124 2 2 558 8 555 0.0 874
MS.gene032057.t1 MTR_2g081980 73.797 561 143 3 2 560 3 561 0.0 862
MS.gene032057.t1 MTR_2g082010 70.072 558 167 0 3 560 15 572 0.0 828
MS.gene032057.t1 MTR_2g082050 82.651 513 34 4 43 555 1 458 0.0 826
MS.gene032057.t1 MTR_4g019550 65.458 579 156 6 1 556 1 558 0.0 758
MS.gene032057.t1 MTR_4g081460 46.858 557 286 9 2 553 8 559 1.66e-178 515
MS.gene032057.t1 MTR_5g062230 46.429 560 289 9 1 556 1 553 1.23e-177 513
MS.gene032057.t1 MTR_6g039440 44.304 553 301 7 7 556 5 553 3.36e-170 494
MS.gene032057.t1 MTR_6g008560 43.920 551 302 7 9 556 11 557 3.37e-170 494
MS.gene032057.t1 MTR_5g073200 44.954 545 295 5 12 554 6 547 1.31e-168 489
MS.gene032057.t1 MTR_4g048460 44.283 551 299 7 9 556 16 561 6.85e-167 486
MS.gene032057.t1 MTR_3g464190 44.771 545 296 5 12 554 14 555 1.39e-166 485
MS.gene032057.t1 MTR_5g073260 44.404 554 296 8 9 556 5 552 7.45e-164 478
MS.gene032057.t1 MTR_5g094620 42.596 547 289 7 12 556 14 537 7.87e-158 462
MS.gene032057.t1 MTR_4g048460 44.889 450 244 4 9 457 16 462 2.02e-138 410
MS.gene032057.t1 MTR_6g008560 44.059 404 221 5 155 556 1 401 1.59e-121 364
MS.gene032057.t1 MTR_2g064425 34.743 544 341 8 14 554 52 584 3.44e-102 320
MS.gene032057.t1 MTR_4g045810 35.209 551 332 10 15 555 45 580 2.21e-101 318
MS.gene032057.t1 MTR_8g057020 34.062 549 341 9 13 554 53 587 4.15e-96 305
MS.gene032057.t1 MTR_2g065450 34.312 545 343 8 13 554 56 588 1.20e-93 298
MS.gene032057.t1 MTR_2g064425 33.088 544 335 9 14 554 52 569 9.68e-92 293
MS.gene032057.t1 MTR_2g089120 32.438 521 332 9 38 554 59 563 2.20e-86 278
MS.gene032057.t1 MTR_7g010710 32.796 558 359 12 2 553 5 552 1.92e-85 276
MS.gene032057.t1 MTR_2g089130 32.946 516 327 9 38 550 59 558 1.03e-84 274
MS.gene032057.t1 MTR_2g064425 39.178 365 212 5 14 377 52 407 3.00e-79 256
MS.gene032057.t1 MTR_4g092020 31.166 523 335 11 41 554 63 569 7.80e-77 253
MS.gene032057.t1 MTR_4g092010 31.673 502 328 9 54 552 67 556 5.04e-76 251
MS.gene032057.t1 MTR_2g064425 36.712 365 206 6 14 377 52 392 5.72e-69 229
MS.gene032057.t1 MTR_2g010960 29.191 507 334 8 39 529 1 498 8.56e-68 228
MS.gene032057.t1 MTR_3g465090 29.299 471 313 9 71 529 31 493 4.86e-64 218
MS.gene032057.t1 MTR_3g063120 29.025 472 314 10 71 529 6 469 7.82e-62 212
MS.gene032057.t1 MTR_3g063140 28.340 494 338 8 45 529 7 493 8.97e-62 212
MS.gene032057.t1 MTR_3g063170 28.172 465 326 5 71 529 31 493 1.48e-59 206
MS.gene032057.t1 MTR_6g064980 27.778 468 324 6 71 529 31 493 2.22e-59 206
MS.gene032057.t1 MTR_3g052120 28.106 491 343 6 45 529 7 493 1.45e-58 203
MS.gene032057.t1 MTR_5g094530 42.254 213 88 3 166 377 2 180 4.66e-46 160
MS.gene032057.t1 MTR_6g065040 26.329 395 277 6 144 529 2 391 2.84e-45 165
MS.gene032057.t1 MTR_7g050990 43.069 202 96 5 191 388 15 201 1.48e-42 164
MS.gene032057.t1 MTR_7g057340 40.462 173 100 3 386 556 1 172 5.41e-40 143
MS.gene032057.t1 MTR_3g063160 31.399 293 193 3 39 328 1 288 3.53e-39 145
MS.gene032057.t1 MTR_7g057390 38.150 173 101 4 386 556 1 169 2.69e-35 130
MS.gene032057.t1 MTR_3g058160 26.316 532 334 18 65 558 62 573 1.79e-33 135
MS.gene032057.t1 MTR_3g058160 26.316 532 334 18 65 558 253 764 2.64e-33 135
MS.gene032057.t1 MTR_3g058160 26.316 532 334 18 65 558 266 777 3.83e-33 135
MS.gene032057.t1 MTR_3g058160 26.316 532 334 18 65 558 273 784 3.96e-33 135
MS.gene032057.t1 MTR_2g064295 26.277 548 344 19 54 558 234 764 1.06e-32 134
MS.gene032057.t1 MTR_3g058160 24.774 553 337 18 65 558 273 805 1.59e-29 124
MS.gene032057.t1 MTR_2g012870 24.081 544 382 11 22 544 212 745 5.86e-29 122
MS.gene032057.t1 MTR_2g012900 23.656 558 381 14 22 544 212 759 5.22e-27 116
MS.gene032057.t1 MTR_7g094970 27.715 267 167 6 72 313 212 477 4.41e-25 110
MS.gene032057.t1 MTR_5g030050 28.788 264 155 8 72 312 4 257 1.32e-23 102
MS.gene032057.t1 MTR_7g011663 30.000 260 156 6 71 305 349 607 1.13e-22 103
MS.gene032057.t1 MTR_7g011770 27.891 294 185 7 72 339 246 538 5.90e-21 97.4
MS.gene032057.t1 MTR_3g015080 28.488 172 84 4 386 556 1 134 3.23e-15 73.2
MS.gene032057.t1 MTR_5g081730 42.268 97 55 1 161 257 16 111 8.40e-14 69.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene032057.t1 AT5G23960 39.011 546 328 5 12 556 4 545 6.20e-137 409
MS.gene032057.t1 AT5G23960 38.798 549 327 7 12 556 4 547 6.18e-135 404
MS.gene032057.t1 AT3G14490 36.131 548 340 5 14 556 59 601 1.23e-117 361
MS.gene032057.t1 AT3G14520 34.124 548 351 6 14 556 62 604 4.66e-106 331
MS.gene032057.t1 AT1G70080 34.386 570 348 13 3 556 52 611 3.38e-104 326
MS.gene032057.t1 AT1G31950 33.333 549 350 7 16 556 66 606 1.62e-102 322
MS.gene032057.t1 AT3G14540 33.091 550 358 6 12 556 57 601 4.90e-102 320
MS.gene032057.t1 AT1G33750 34.249 546 349 8 14 556 65 603 5.84e-102 320
MS.gene032057.t1 AT1G31950 33.151 549 352 6 16 556 66 607 7.04e-102 320
MS.gene032057.t1 AT4G16730 35.893 521 310 11 51 556 28 539 8.86e-100 313
MS.gene032057.t1 AT5G44630 34.935 541 337 10 23 554 21 555 6.16e-99 311
MS.gene032057.t1 AT4G15870 34.397 564 340 13 4 556 54 598 3.96e-96 305
MS.gene032057.t1 AT4G16730 35.400 500 300 10 72 556 2 493 7.06e-96 301
MS.gene032057.t1 AT4G16740 33.630 562 350 13 5 556 16 564 2.90e-95 301
MS.gene032057.t1 AT3G32030 32.907 547 357 7 15 556 63 604 5.55e-95 302
MS.gene032057.t1 AT2G24210 32.756 577 345 15 4 557 35 591 3.79e-93 297
MS.gene032057.t1 AT4G13300 32.965 543 347 9 23 556 20 554 7.88e-93 295
MS.gene032057.t1 AT3G29410 30.755 556 379 4 3 556 52 603 2.99e-91 292
MS.gene032057.t1 AT3G25830 32.302 582 350 13 1 557 33 595 2.31e-90 290
MS.gene032057.t1 AT3G25820 32.302 582 350 13 1 557 33 595 2.31e-90 290
MS.gene032057.t1 AT3G14540 34.211 456 291 5 12 463 57 507 3.83e-90 286
MS.gene032057.t1 AT1G31950 34.368 451 282 5 16 459 66 509 4.92e-89 284
MS.gene032057.t1 AT4G13280 33.457 538 347 8 25 556 22 554 4.91e-85 275
MS.gene032057.t1 AT4G20210 32.423 549 358 10 15 556 58 600 5.63e-85 276
MS.gene032057.t1 AT3G25810 32.815 579 354 16 1 557 33 598 3.28e-83 271
MS.gene032057.t1 AT3G29410 30.080 502 345 4 57 556 1 498 7.32e-82 265
MS.gene032057.t1 AT1G61680 31.673 502 329 6 48 543 73 566 4.94e-81 265
MS.gene032057.t1 AT2G23230 31.646 553 351 12 15 552 56 596 6.44e-80 263
MS.gene032057.t1 AT2G23230 31.636 550 350 13 15 552 56 591 3.02e-79 261
MS.gene032057.t1 AT4G20230 31.627 547 360 10 14 552 61 601 4.60e-79 260
MS.gene032057.t1 AT4G20230 31.627 547 360 10 14 552 73 613 6.04e-79 260
MS.gene032057.t1 AT4G20200 31.478 521 345 9 41 554 87 602 1.41e-78 259
MS.gene032057.t1 AT1G48800 31.993 547 356 11 15 552 63 602 6.63e-78 257
MS.gene032057.t1 AT1G61680 31.474 502 323 8 48 543 73 559 1.46e-77 255
MS.gene032057.t1 AT3G29110 31.876 549 357 11 15 554 55 595 2.16e-77 256
MS.gene032057.t1 AT1G66020 31.238 541 359 10 23 556 64 598 1.03e-76 254
MS.gene032057.t1 AT3G29190 31.679 524 344 10 41 556 84 601 5.70e-74 247
MS.gene032057.t1 AT4G13280 31.844 537 327 9 25 556 22 524 7.82e-74 244
MS.gene032057.t1 AT4G16740 36.483 381 225 9 5 377 16 387 1.99e-72 237
MS.gene032057.t1 AT3G25820 33.092 414 241 9 1 396 33 428 2.33e-67 225
MS.gene032057.t1 AT1G48820 30.403 546 326 13 14 552 62 560 1.40e-66 226
MS.gene032057.t1 AT4G16740 37.425 334 193 8 5 330 16 341 2.75e-64 215
MS.gene032057.t1 AT4G16740 37.425 334 193 8 5 330 16 341 2.75e-64 215
MS.gene032057.t1 AT5G48110 31.778 343 227 7 216 556 2 339 2.81e-59 201
MS.gene032057.t1 AT3G25820 33.623 345 200 6 1 330 33 363 1.58e-57 197
MS.gene032057.t1 AT3G25820 33.623 345 200 6 1 330 33 363 1.58e-57 197
MS.gene032057.t1 AT1G66020 33.611 360 230 6 23 377 64 419 7.69e-55 191
MS.gene032057.t1 AT1G61120 24.565 517 345 17 68 556 285 784 1.00e-26 115
MS.gene032057.t1 AT4G02780 30.709 254 150 6 72 300 335 587 1.07e-23 106
MS.gene032057.t1 AT1G79460 24.099 527 345 20 68 558 274 781 4.40e-23 104

Find 100 sgRNAs with CRISPR-Local

Find 257 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTCCTTGTTAATGTGCTTAT+AGG 0.192049 2.3:-15448904 None:intergenic
TAGCATGTTGAAATCTAATT+TGG 0.196250 2.3:-15447663 None:intergenic
CCTACTTGGTGGAAACTAAA+TGG 0.196481 2.3:+15448512 MS.gene032057:CDS
TCGTGTTGTTCCATGCTTAT+TGG 0.202956 2.3:-15449107 None:intergenic
TTTCTTGAAATGGCATATTT+AGG 0.210704 2.3:-15447988 None:intergenic
TAATTTACAGTTCTATAAAT+TGG 0.211901 2.3:+15448483 MS.gene032057:intron
GAGTTGCTTGATTGGCTTTC+CGG 0.238935 2.3:+15448649 MS.gene032057:CDS
AGAGACTGGAAAATCAAATT+TGG 0.262347 2.3:+15448351 MS.gene032057:CDS
CATTGATTCATTGCAACGTT+TGG 0.266265 2.3:+15447053 MS.gene032057:CDS
CAATACTTACTTGGTGATAC+TGG 0.284377 2.3:-15447711 None:intergenic
CAAATGAAGAGTTGCTTGAT+TGG 0.317590 2.3:+15448641 MS.gene032057:CDS
TTTCGTTTGCTTCGGCAAAA+AGG 0.336066 2.3:+15447195 MS.gene032057:CDS
CGTAGTTATTTCCTTATTGT+TGG 0.339299 2.3:-15447139 None:intergenic
AATACCACTTTCATGCAATC+TGG 0.367571 2.3:-15448283 None:intergenic
CTACTTGGTGGAAACTAAAT+GGG 0.369327 2.3:+15448513 MS.gene032057:CDS
ACAAAAGATATTATTGAAAG+TGG 0.371522 2.3:-15448601 None:intergenic
GATGATACTTATGATGCCTT+TGG 0.380041 2.3:+15448048 MS.gene032057:CDS
GCAGCGCATTTAAAGATTCA+TGG 0.380777 2.3:+15447434 MS.gene032057:CDS
ATGAGGATAAATACACAAAT+GGG 0.381090 2.3:+15449045 MS.gene032057:CDS
GTTAATGCTGCATCGGCTAT+TGG 0.381664 2.3:+15448685 MS.gene032057:CDS
TATGATGAATATAAAGCTAA+TGG 0.383735 2.3:+15448559 MS.gene032057:CDS
ATTGATTCATTGCAACGTTT+GGG 0.384809 2.3:+15447054 MS.gene032057:CDS
CATTAGCATTTCGTTTGCTT+CGG 0.385158 2.3:+15447187 MS.gene032057:CDS
TTAATACAATAGTAGAACTA+TGG 0.385760 2.3:+15448305 MS.gene032057:CDS
TATGCCATTTCAAGAAAGAT+AGG 0.390398 2.3:+15447994 MS.gene032057:CDS
ACACATTCAAGCACAGGCTT+GGG 0.401339 2.3:-15448981 None:intergenic
CCACATTCCTTGAACATCTT+CGG 0.405650 2.3:-15447399 None:intergenic
TATGAGGATAAATACACAAA+TGG 0.411324 2.3:+15449044 MS.gene032057:CDS
GAGTGGTTGAAGCTTACTTT+TGG 0.429246 2.3:+15447944 MS.gene032057:CDS
ACCACTCTATCCCTTGCATA+AGG 0.436097 2.3:-15447928 None:intergenic
AAGAAAAGTACTCAATTGAA+TGG 0.454933 2.3:-15447516 None:intergenic
AAAGTCAGACTTTGCAAGAA+AGG 0.455216 2.3:+15447903 MS.gene032057:CDS
GAATGGAAGTCTTGGAACTA+AGG 0.456556 2.3:-15447499 None:intergenic
TATAGGGAGCTTCGATGAAA+AGG 0.457004 2.3:+15447373 MS.gene032057:CDS
AACACATTCAAGCACAGGCT+TGG 0.459697 2.3:-15448982 None:intergenic
GCTTTATATTCATCATATGT+TGG 0.462523 2.3:-15448553 None:intergenic
GATGCAGCATTAACGATTGT+TGG 0.464015 2.3:-15448676 None:intergenic
ATGCAGCATTAACGATTGTT+GGG 0.468634 2.3:-15448675 None:intergenic
CCACTCTATCCCTTGCATAA+GGG 0.470931 2.3:-15447927 None:intergenic
ATGGGAAGGATCTTCTTCAT+AGG 0.471689 2.3:-15447618 None:intergenic
GAGATGATATTATTAGAGAC+TGG 0.485037 2.3:+15448337 MS.gene032057:CDS
ACTCAATTGAATGGAAGTCT+TGG 0.490166 2.3:-15447507 None:intergenic
ACAATGGGTCGTGTGATGTC+AGG 0.492340 2.3:-15444166 None:intergenic
TAAATTGGCACAATCCTACT+TGG 0.497093 2.3:+15448498 MS.gene032057:CDS
AAAGGACATCGCATTTCATC+GGG 0.497536 2.3:+15447213 MS.gene032057:CDS
TCAATATGATTCACAATCAT+CGG 0.501765 2.3:+15444225 MS.gene032057:CDS
GAAACTAAATGGGGCAATGA+AGG 0.502726 2.3:+15448523 MS.gene032057:CDS
CACTTTCATGCAATCTGGAA+GGG 0.506182 2.3:-15448278 None:intergenic
ATGCCATTTCAAGAAAGATA+GGG 0.506288 2.3:+15447995 MS.gene032057:CDS
ATTAACGATTGTTGGGTCAC+CGG 0.511653 2.3:-15448668 None:intergenic
AAAAGGACATCGCATTTCAT+CGG 0.512587 2.3:+15447212 MS.gene032057:CDS
AAGGAAATAACTACGAAAGA+AGG 0.516368 2.3:+15447147 MS.gene032057:CDS
AAGGTTTCCGAAGATGTTCA+AGG 0.516951 2.3:+15447392 MS.gene032057:CDS
ATATACAGTTTGAGCAGCAA+AGG 0.522590 2.3:+15448820 MS.gene032057:intron
CCTTCCAGATTGCATGAAAG+TGG 0.528558 2.3:+15448279 MS.gene032057:CDS
CCGAAGATGTTCAAGGAATG+TGG 0.528639 2.3:+15447399 MS.gene032057:CDS
ATGCTAATGCAAGGAAGTGA+AGG 0.530932 2.3:-15447173 None:intergenic
TAACACCTTGTCTCCAACCT+AGG 0.533926 2.3:-15447587 None:intergenic
ATTGGCACAATCCTACTTGG+TGG 0.537127 2.3:+15448501 MS.gene032057:CDS
AAGTTCTTCAACTGTGCCAA+AGG 0.539484 2.3:-15448064 None:intergenic
TATACAGTTTGAGCAGCAAA+GGG 0.542549 2.3:+15448821 MS.gene032057:intron
TAGGAACTCCCTTGTGTAGA+GGG 0.548789 2.3:-15447568 None:intergenic
AACAATCGTTAATGCTGCAT+CGG 0.549106 2.3:+15448678 MS.gene032057:CDS
CCATTTAGTTTCCACCAAGT+AGG 0.553603 2.3:-15448512 None:intergenic
ACTTTCATGCAATCTGGAAG+GGG 0.554469 2.3:-15448277 None:intergenic
CTAGGACGAAAATTCACAAT+GGG 0.555046 2.3:-15444181 None:intergenic
CTCTACACAAGGGAGTTCCT+AGG 0.557142 2.3:+15447570 MS.gene032057:CDS
GATGTCAGGTACTGCATGTG+TGG 0.559850 2.3:-15444152 None:intergenic
CAAAAGATATTATTGAAAGT+GGG 0.560683 2.3:-15448600 None:intergenic
CTTAAAGAACCCTCTACACA+AGG 0.561336 2.3:+15447559 MS.gene032057:CDS
CAAGAAAGGTCCCTTATGCA+AGG 0.561870 2.3:+15447917 MS.gene032057:CDS
CTAGGAACTCCCTTGTGTAG+AGG 0.565612 2.3:-15447569 None:intergenic
GCTTGAATGTGTTCTTAATG+TGG 0.566723 2.3:+15448992 MS.gene032057:CDS
TAATACAATAGTAGAACTAT+GGG 0.571841 2.3:+15448306 MS.gene032057:CDS
CCACTTTCATGCAATCTGGA+AGG 0.572065 2.3:-15448279 None:intergenic
TGCCATTTCAAGAAAGATAG+GGG 0.572230 2.3:+15447996 MS.gene032057:CDS
CCCTTATGCAAGGGATAGAG+TGG 0.573252 2.3:+15447927 MS.gene032057:CDS
TTAAGAACACATTCAAGCAC+AGG 0.575655 2.3:-15448987 None:intergenic
ATACAACATGTCACAAGAAG+AGG 0.587516 2.3:+15448881 MS.gene032057:CDS
CACATTCAAGCACAGGCTTG+GGG 0.594903 2.3:-15448980 None:intergenic
ACACAAGGGAGTTCCTAGGT+TGG 0.596654 2.3:+15447574 MS.gene032057:CDS
GCTCATAGATCCAATAAGCA+TGG 0.596722 2.3:+15449097 MS.gene032057:CDS
GAGTTCCTAGGTTGGAGACA+AGG 0.597230 2.3:+15447582 MS.gene032057:CDS
GGCCTATAAGCACATTAACA+AGG 0.598180 2.3:+15448902 MS.gene032057:CDS
ATGTCAGGTACTGCATGTGT+GGG 0.605468 2.3:-15444151 None:intergenic
GTTCACCTACGAAAACTATG+AGG 0.623140 2.3:+15449028 MS.gene032057:CDS
GGCTCATAAGACATAGCCAA+TGG 0.624278 2.3:-15447967 None:intergenic
GCAAACGAAATGCTAATGCA+AGG 0.626414 2.3:-15447182 None:intergenic
TGCTAATGCAAGGAAGTGAA+GGG 0.631554 2.3:-15447172 None:intergenic
ATCGGCTATTGGCAGACTCG+CGG 0.633349 2.3:+15448696 MS.gene032057:CDS
TTTGCGTAGTACTTTGTGCG+AGG 0.647042 2.3:-15448728 None:intergenic
AAGAAAGGTCCCTTATGCAA+GGG 0.648663 2.3:+15447918 MS.gene032057:CDS
TCTTCACTCAAGCAATCCAG+AGG 0.660222 2.3:+15448091 MS.gene032057:CDS
GCCATTTCAAGAAAGATAGG+GGG 0.668623 2.3:+15447997 MS.gene032057:CDS
TGGGGATGTAATCTAACTTG+AGG 0.668955 2.3:-15448962 None:intergenic
GCTAGGACGAAAATTCACAA+TGG 0.670142 2.3:-15444182 None:intergenic
TACTTGGTGGAAACTAAATG+GGG 0.673183 2.3:+15448514 MS.gene032057:CDS
TGAGGATAAATACACAAATG+GGG 0.685483 2.3:+15449046 MS.gene032057:CDS
TGTGGGAGCTACAACAGACA+TGG 0.695460 2.3:-15444134 None:intergenic
TTAAAGAACCCTCTACACAA+GGG 0.744861 2.3:+15447560 MS.gene032057:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAATCTATACTATATATAA+AGG - chr2.3:15446338-15446357 None:intergenic 10.0%
!!! AATCTTTTCATAATTTTTTT+AGG + chr2.3:15446490-15446509 MS.gene032057:intron 10.0%
!!! ATTTTTTTCATATTTTTTTG+AGG + chr2.3:15446562-15446581 MS.gene032057:intron 10.0%
!!! TGATTTTATCATTTTTTAAA+AGG + chr2.3:15444648-15444667 MS.gene032057:intron 10.0%
!!! TTACTTGTATTTAAAATTAA+GGG + chr2.3:15446260-15446279 MS.gene032057:intron 10.0%
!!! TTTTAACTTGATTTTAATAT+TGG - chr2.3:15444481-15444500 None:intergenic 10.0%
!! AAAAAAGAAGTAAAAAGTAA+AGG + chr2.3:15446691-15446710 MS.gene032057:intron 15.0%
!! AAAGAAAAACAAAAAGAAAA+AGG - chr2.3:15445404-15445423 None:intergenic 15.0%
!! AAATATTTATGGAAATTAGA+GGG - chr2.3:15446771-15446790 None:intergenic 15.0%
!! GAAAAAAAAATCATAAGATT+AGG - chr2.3:15448190-15448209 None:intergenic 15.0%
!! TAATTTACAGTTCTATAAAT+TGG + chr2.3:15448483-15448502 MS.gene032057:intron 15.0%
!! TCATATGTACTAAAAAATTT+AGG - chr2.3:15446798-15446817 None:intergenic 15.0%
!!! AAGTTTTTTTTGTTTCATTT+TGG + chr2.3:15445732-15445751 MS.gene032057:intron 15.0%
!!! AGTTTGTTATACTTTTTAAA+TGG + chr2.3:15446102-15446121 MS.gene032057:intron 15.0%
!!! ATCAGTTTTGAAATATTTAT+AGG - chr2.3:15448414-15448433 None:intergenic 15.0%
!!! ATTTAGGTTTGAAATATTTA+TGG - chr2.3:15446782-15446801 None:intergenic 15.0%
!!! GTTACTTGTATTTAAAATTA+AGG + chr2.3:15446259-15446278 MS.gene032057:intron 15.0%
!!! TATTGATAAAATTTTCATAG+TGG + chr2.3:15445240-15445259 MS.gene032057:intron 15.0%
!!! TTAGATTTCTTTTCTTTTTT+TGG - chr2.3:15446893-15446912 None:intergenic 15.0%
!!! TTATACTTTTTAAATGGTAA+AGG + chr2.3:15446108-15446127 MS.gene032057:intron 15.0%
!!! TTTAAAATTAAGGGTATTTT+TGG + chr2.3:15446269-15446288 MS.gene032057:intron 15.0%
!!! TTTCAATAATATCTTTTGTT+GGG + chr2.3:15448605-15448624 MS.gene032057:CDS 15.0%
!!! TTTGAAATATTTATAGGAAT+TGG - chr2.3:15448408-15448427 None:intergenic 15.0%
!!! TTTTGTTGTAAAAGTAAATA+TGG - chr2.3:15447257-15447276 None:intergenic 15.0%
!! AAAAAATTCAAGAGCAATAT+AGG + chr2.3:15447356-15447375 MS.gene032057:CDS 20.0%
!! AAAAATTCAAGAGCAATATA+GGG + chr2.3:15447357-15447376 MS.gene032057:CDS 20.0%
!! AAAGAATTTCCATTATGATT+TGG + chr2.3:15445580-15445599 MS.gene032057:intron 20.0%
!! AATATTTATGGAAATTAGAG+GGG - chr2.3:15446770-15446789 None:intergenic 20.0%
!! AATCTTCATTAATTAGCTAA+AGG - chr2.3:15446627-15446646 None:intergenic 20.0%
!! ACAAAAGATATTATTGAAAG+TGG - chr2.3:15448604-15448623 None:intergenic 20.0%
!! ACTAAATTTCCTTATAAATG+TGG + chr2.3:15446722-15446741 MS.gene032057:intron 20.0%
!! AGAAAATTTGTATCAATAGT+AGG + chr2.3:15446446-15446465 MS.gene032057:intron 20.0%
!! ATTTGATTCAGATATGTATT+CGG - chr2.3:15444972-15444991 None:intergenic 20.0%
!! CAAAAGATATTATTGAAAGT+GGG - chr2.3:15448603-15448622 None:intergenic 20.0%
!! CATAGAACAAATTAAAAACA+TGG + chr2.3:15444584-15444603 MS.gene032057:intron 20.0%
!! GAAATATTTATGGAAATTAG+AGG - chr2.3:15446772-15446791 None:intergenic 20.0%
!! GTTACATTCTTATTAAACAA+CGG + chr2.3:15447824-15447843 MS.gene032057:intron 20.0%
!! TAACTATTTAGATAAAAGCT+TGG - chr2.3:15446846-15446865 None:intergenic 20.0%
!! TAATACAATAGTAGAACTAT+GGG + chr2.3:15448306-15448325 MS.gene032057:CDS 20.0%
!! TAGTGAAACTTAAAAACATA+AGG - chr2.3:15445463-15445482 None:intergenic 20.0%
!! TATAAGGAAATTTAGTGAAT+TGG - chr2.3:15446718-15446737 None:intergenic 20.0%
!! TATGATGAATATAAAGCTAA+TGG + chr2.3:15448559-15448578 MS.gene032057:CDS 20.0%
!! TATGTTTGTAACATGAATAA+TGG - chr2.3:15447288-15447307 None:intergenic 20.0%
!! TTAATACAATAGTAGAACTA+TGG + chr2.3:15448305-15448324 MS.gene032057:CDS 20.0%
!!! AAACTAAACTTCATGTTTTA+CGG - chr2.3:15444356-15444375 None:intergenic 20.0%
!!! AGTTTAGAAGAATTTTACTA+TGG - chr2.3:15447640-15447659 None:intergenic 20.0%
!!! CTTTCAATAATATCTTTTGT+TGG + chr2.3:15448604-15448623 MS.gene032057:CDS 20.0%
!!! GTACTCATTTTTTGAATATA+AGG + chr2.3:15447740-15447759 MS.gene032057:intron 20.0%
!!! GTTTAACGTTTTTAACATAA+AGG - chr2.3:15445699-15445718 None:intergenic 20.0%
!!! GTTTAGAAGAATTTTACTAT+GGG - chr2.3:15447639-15447658 None:intergenic 20.0%
!!! GTTTGACTTAATTATATTCT+AGG + chr2.3:15445622-15445641 MS.gene032057:intron 20.0%
!!! TAGATCAAGATTTTAATTTG+CGG - chr2.3:15447798-15447817 None:intergenic 20.0%
!!! TTACGTACATATGTTTTTAT+GGG + chr2.3:15444269-15444288 MS.gene032057:intron 20.0%
!!! TTGCATTTTTGTGTTTATTA+TGG + chr2.3:15448763-15448782 MS.gene032057:intron 20.0%
!!! TTTACGTACATATGTTTTTA+TGG + chr2.3:15444268-15444287 MS.gene032057:intron 20.0%
! ATATTTATGGAAATTAGAGG+GGG - chr2.3:15446769-15446788 None:intergenic 25.0%
! ATCACTTGTATTTATATCAC+AGG + chr2.3:15447872-15447891 MS.gene032057:intron 25.0%
! ATGACAATTCCACATTTATA+AGG - chr2.3:15446734-15446753 None:intergenic 25.0%
! ATGAGGATAAATACACAAAT+GGG + chr2.3:15449045-15449064 MS.gene032057:CDS 25.0%
! ATGTCAAGAATAGATAATTG+TGG - chr2.3:15448164-15448183 None:intergenic 25.0%
! CAATATATTAAACAAGCTGT+AGG + chr2.3:15448379-15448398 MS.gene032057:intron 25.0%
! GAAAAGATTACCTGATAAAA+TGG - chr2.3:15446479-15446498 None:intergenic 25.0%
! GCTTTATATTCATCATATGT+TGG - chr2.3:15448556-15448575 None:intergenic 25.0%
! TAACGTTTGGAAATTATGAA+CGG + chr2.3:15445925-15445944 MS.gene032057:intron 25.0%
! TACTATAATGAGTTTCAACA+AGG - chr2.3:15445869-15445888 None:intergenic 25.0%
! TAGCATGTTGAAATCTAATT+TGG - chr2.3:15447666-15447685 None:intergenic 25.0%
! TATAGTACACTAGCAAAAAA+CGG + chr2.3:15445882-15445901 MS.gene032057:intron 25.0%
! TATGAGGATAAATACACAAA+TGG + chr2.3:15449044-15449063 MS.gene032057:CDS 25.0%
! TCAATATGATTCACAATCAT+CGG + chr2.3:15444225-15444244 MS.gene032057:CDS 25.0%
! TCATTGAATTTCTATGAGTT+GGG + chr2.3:15444847-15444866 MS.gene032057:intron 25.0%
! TTACACTAACCAAATCATAA+TGG - chr2.3:15445592-15445611 None:intergenic 25.0%
! TTCATTGAATTTCTATGAGT+TGG + chr2.3:15444846-15444865 MS.gene032057:intron 25.0%
! TTTCTTGAAATGGCATATTT+AGG - chr2.3:15447991-15448010 None:intergenic 25.0%
!! GAATACTTTTACCAACAATA+AGG + chr2.3:15447128-15447147 MS.gene032057:CDS 25.0%
!! TACATTTTGCAATACTTACT+TGG - chr2.3:15447723-15447742 None:intergenic 25.0%
!!! AAGAAAAGTACTCAATTGAA+TGG - chr2.3:15447519-15447538 None:intergenic 25.0%
!!! AGGTTATTTTCGTTTCATTT+TGG + chr2.3:15445672-15445691 MS.gene032057:intron 25.0%
!!! ATGAAGTTTTTTGAGGTTTT+CGG + chr2.3:15444990-15445009 MS.gene032057:intron 25.0%
!!! GAATCAAATGAAGTTTTTTG+AGG + chr2.3:15444983-15445002 MS.gene032057:intron 25.0%
!!! GTTTATGTTGGTTTGATTTT+TGG + chr2.3:15445362-15445381 MS.gene032057:intron 25.0%
!!! TAAGTTTCGCTTTGTTTTTT+AGG + chr2.3:15445652-15445671 MS.gene032057:intron 25.0%
!!! TATTTTTTTGAGGCTCAAAA+CGG + chr2.3:15446572-15446591 MS.gene032057:intron 25.0%
!!! TCATATGTAGTTTTGATACA+CGG + chr2.3:15445196-15445215 MS.gene032057:intron 25.0%
AAATGCAAAAAGAGGAAGTT+AGG + chr2.3:15446983-15447002 MS.gene032057:CDS 30.0%
AAGGAAATAACTACGAAAGA+AGG + chr2.3:15447147-15447166 MS.gene032057:CDS 30.0%
AATAGTATAACAACAGTCCT+AGG - chr2.3:15445070-15445089 None:intergenic 30.0%
ACAAGTACAAATGCAAAAAG+AGG + chr2.3:15446975-15446994 MS.gene032057:CDS 30.0%
ACTCAAACAAAAGGAGAATT+AGG - chr2.3:15448230-15448249 None:intergenic 30.0%
ACTTGTATTTATATCACAGG+TGG + chr2.3:15447875-15447894 MS.gene032057:intron 30.0%
AGAGACTGGAAAATCAAATT+TGG + chr2.3:15448351-15448370 MS.gene032057:CDS 30.0%
ATAGTACACTAGCAAAAAAC+GGG + chr2.3:15445883-15445902 MS.gene032057:intron 30.0%
ATAGTATAACAACAGTCCTA+GGG - chr2.3:15445069-15445088 None:intergenic 30.0%
CTAACATTCGCTTCATAAAA+AGG - chr2.3:15446383-15446402 None:intergenic 30.0%
CTCAAACAAAAGGAGAATTA+GGG - chr2.3:15448229-15448248 None:intergenic 30.0%
GAGATGATATTATTAGAGAC+TGG + chr2.3:15448337-15448356 MS.gene032057:CDS 30.0%
TAAAAACATGGACCGAAAAA+CGG + chr2.3:15444596-15444615 MS.gene032057:intron 30.0%
TAGATAAAAGCTTGGTTATG+TGG - chr2.3:15446838-15446857 None:intergenic 30.0%
TATGTTGATCGTAACATTGT+TGG - chr2.3:15444568-15444587 None:intergenic 30.0%
TCTTATGTTGTGGTTTAGTT+TGG + chr2.3:15444894-15444913 MS.gene032057:intron 30.0%
TGAGGATAAATACACAAATG+GGG + chr2.3:15449046-15449065 MS.gene032057:CDS 30.0%
TTAGTGTTTCTCTTATGTTG+TGG + chr2.3:15444884-15444903 MS.gene032057:intron 30.0%
TTCATTAATTAGCTAAAGGC+TGG - chr2.3:15446623-15446642 None:intergenic 30.0%
TTTGGATTCAAATAAACCTC+TGG - chr2.3:15448110-15448129 None:intergenic 30.0%
! AAAATTTTCATAGTGGTTCG+AGG + chr2.3:15445247-15445266 MS.gene032057:intron 30.0%
! ACAAGGACATTGAAGATTTT+TGG + chr2.3:15448919-15448938 MS.gene032057:CDS 30.0%
! AGAAGAATTTTACTATGGGA+AGG - chr2.3:15447635-15447654 None:intergenic 30.0%
! ATAATATCTTTTGTTGGGCT+TGG + chr2.3:15448610-15448629 MS.gene032057:CDS 30.0%
! ATGCCATTTCAAGAAAGATA+GGG + chr2.3:15447995-15448014 MS.gene032057:CDS 30.0%
! ATTCGTTTTGCTCTTTGTAA+TGG + chr2.3:15445428-15445447 MS.gene032057:intron 30.0%
! ATTGATTCATTGCAACGTTT+GGG + chr2.3:15447054-15447073 MS.gene032057:CDS 30.0%
! CGTAGTTATTTCCTTATTGT+TGG - chr2.3:15447142-15447161 None:intergenic 30.0%
! TATGCCATTTCAAGAAAGAT+AGG + chr2.3:15447994-15448013 MS.gene032057:CDS 30.0%
! TTCGTTTTGCTCTTTGTAAT+GGG + chr2.3:15445429-15445448 MS.gene032057:intron 30.0%
! TTTATCCTCATAGTTTTCGT+AGG - chr2.3:15449036-15449055 None:intergenic 30.0%
!! GTTTTCGGTTTGAATTAGTT+CGG + chr2.3:15445005-15445024 MS.gene032057:intron 30.0%
!! TATCGAAGAAAACCGTTTTT+CGG - chr2.3:15444611-15444630 None:intergenic 30.0%
!! TTTAATTTGCGGTCACAAAA+TGG - chr2.3:15447787-15447806 None:intergenic 30.0%
!!! GTTTTTATGGGTGTTGTTTA+GGG + chr2.3:15444281-15444300 MS.gene032057:intron 30.0%
!!! TAAGCTGTTTTGGTTTATGT+TGG + chr2.3:15445350-15445369 MS.gene032057:intron 30.0%
!!! TGTTTTTATGGGTGTTGTTT+AGG + chr2.3:15444280-15444299 MS.gene032057:intron 30.0%
AAAAGGACATCGCATTTCAT+CGG + chr2.3:15447212-15447231 MS.gene032057:CDS 35.0%
AAAGTCAGACTTTGCAAGAA+AGG + chr2.3:15447903-15447922 MS.gene032057:CDS 35.0%
AACAATCGTTAATGCTGCAT+CGG + chr2.3:15448678-15448697 MS.gene032057:CDS 35.0%
AAGAAAGATAGGGGGAAAAT+TGG + chr2.3:15448005-15448024 MS.gene032057:CDS 35.0%
AATACCACTTTCATGCAATC+TGG - chr2.3:15448286-15448305 None:intergenic 35.0%
ACTCAATTGAATGGAAGTCT+TGG - chr2.3:15447510-15447529 None:intergenic 35.0%
ATACAACATGTCACAAGAAG+AGG + chr2.3:15448881-15448900 MS.gene032057:CDS 35.0%
ATATACAGTTTGAGCAGCAA+AGG + chr2.3:15448820-15448839 MS.gene032057:intron 35.0%
ATGCAGCATTAACGATTGTT+GGG - chr2.3:15448678-15448697 None:intergenic 35.0%
ATTTCCTGCAATTTGTCACA+AGG - chr2.3:15446937-15446956 None:intergenic 35.0%
CAAATGAAGAGTTGCTTGAT+TGG + chr2.3:15448641-15448660 MS.gene032057:CDS 35.0%
CATTAGCATTTCGTTTGCTT+CGG + chr2.3:15447187-15447206 MS.gene032057:CDS 35.0%
CGAATCAAACCAATTCGTTT+GGG + chr2.3:15444403-15444422 MS.gene032057:intron 35.0%
CTAGGACGAAAATTCACAAT+GGG - chr2.3:15444184-15444203 None:intergenic 35.0%
GATGATACTTATGATGCCTT+TGG + chr2.3:15448048-15448067 MS.gene032057:CDS 35.0%
GCTTGAATGTGTTCTTAATG+TGG + chr2.3:15448992-15449011 MS.gene032057:CDS 35.0%
GTCCTTGTTAATGTGCTTAT+AGG - chr2.3:15448907-15448926 None:intergenic 35.0%
TAAATTGGCACAATCCTACT+TGG + chr2.3:15448498-15448517 MS.gene032057:CDS 35.0%
TAGTATAACAACAGTCCTAG+GGG - chr2.3:15445068-15445087 None:intergenic 35.0%
TATACAGTTTGAGCAGCAAA+GGG + chr2.3:15448821-15448840 MS.gene032057:intron 35.0%
TCGAATCAAACCAATTCGTT+TGG + chr2.3:15444402-15444421 MS.gene032057:intron 35.0%
TGTATTTATATCACAGGTGG+TGG + chr2.3:15447878-15447897 MS.gene032057:intron 35.0%
TTAAAGAACCCTCTACACAA+GGG + chr2.3:15447560-15447579 MS.gene032057:CDS 35.0%
TTAAGAACACATTCAAGCAC+AGG - chr2.3:15448990-15449009 None:intergenic 35.0%
TTTAACTCAACAGTGTGGTT+CGG - chr2.3:15444942-15444961 None:intergenic 35.0%
! ATAGTTTTCGTAGGTGAACT+CGG - chr2.3:15449027-15449046 None:intergenic 35.0%
! ATCACTTTCAGCACACTTTT+GGG - chr2.3:15446310-15446329 None:intergenic 35.0%
! CAATACTTACTTGGTGATAC+TGG - chr2.3:15447714-15447733 None:intergenic 35.0%
! CACTAGAAGTTAAGCTGTTT+TGG + chr2.3:15445340-15445359 MS.gene032057:intron 35.0%
! CTACTTGGTGGAAACTAAAT+GGG + chr2.3:15448513-15448532 MS.gene032057:CDS 35.0%
! TACTTGGTGGAAACTAAATG+GGG + chr2.3:15448514-15448533 MS.gene032057:CDS 35.0%
! TATCACTTTCAGCACACTTT+TGG - chr2.3:15446311-15446330 None:intergenic 35.0%
! TGCCATTTCAAGAAAGATAG+GGG + chr2.3:15447996-15448015 MS.gene032057:CDS 35.0%
! TTGAAGTTTTCCCATTGAGT+TGG + chr2.3:15445029-15445048 MS.gene032057:intron 35.0%
!! AGGAGATTAGCCATTTTATC+AGG + chr2.3:15446466-15446485 MS.gene032057:intron 35.0%
!! CAGTTTTTAACTCAACAGTG+TGG - chr2.3:15444947-15444966 None:intergenic 35.0%
!! CATTGATTCATTGCAACGTT+TGG + chr2.3:15447053-15447072 MS.gene032057:CDS 35.0%
!! CTTTTGTTTGAGTTTCAGGT+GGG + chr2.3:15448237-15448256 MS.gene032057:intron 35.0%
!! GGACATTGAAGATTTTTGGA+TGG + chr2.3:15448923-15448942 MS.gene032057:CDS 35.0%
!! TCTCCTTTTGTTTGAGTTTC+AGG + chr2.3:15448233-15448252 MS.gene032057:intron 35.0%
!! TGCTGACTCTTTAATCTTGA+TGG - chr2.3:15445492-15445511 None:intergenic 35.0%
AAAGGACATCGCATTTCATC+GGG + chr2.3:15447213-15447232 MS.gene032057:CDS 40.0%
AAGAAAGGTCCCTTATGCAA+GGG + chr2.3:15447918-15447937 MS.gene032057:CDS 40.0%
AAGGTTTCCGAAGATGTTCA+AGG + chr2.3:15447392-15447411 MS.gene032057:CDS 40.0%
AAGTTCTTCAACTGTGCCAA+AGG - chr2.3:15448067-15448086 None:intergenic 40.0%
ACTTTCATGCAATCTGGAAG+GGG - chr2.3:15448280-15448299 None:intergenic 40.0%
ATGCTAATGCAAGGAAGTGA+AGG - chr2.3:15447176-15447195 None:intergenic 40.0%
ATGGGAAGGATCTTCTTCAT+AGG - chr2.3:15447621-15447640 None:intergenic 40.0%
ATTAACGATTGTTGGGTCAC+CGG - chr2.3:15448671-15448690 None:intergenic 40.0%
ATTTCCAAACGTTAGCACGA+CGG - chr2.3:15445919-15445938 None:intergenic 40.0%
CACTTTCATGCAATCTGGAA+GGG - chr2.3:15448281-15448300 None:intergenic 40.0%
CATTCCTTGTGACAAATTGC+AGG + chr2.3:15446930-15446949 MS.gene032057:intron 40.0%
CCACATTCCTTGAACATCTT+CGG - chr2.3:15447402-15447421 None:intergenic 40.0%
CCACCTGAAACTCAAACAAA+AGG - chr2.3:15448239-15448258 None:intergenic 40.0%
CTTAAAGAACCCTCTACACA+AGG + chr2.3:15447559-15447578 MS.gene032057:CDS 40.0%
GAAACTAAATGGGGCAATGA+AGG + chr2.3:15448523-15448542 MS.gene032057:CDS 40.0%
GAATGGAAGTCTTGGAACTA+AGG - chr2.3:15447502-15447521 None:intergenic 40.0%
GATAAAATGGCTCAAGCGTA+AGG - chr2.3:15446537-15446556 None:intergenic 40.0%
GATGCAGCATTAACGATTGT+TGG - chr2.3:15448679-15448698 None:intergenic 40.0%
GCAAACGAAATGCTAATGCA+AGG - chr2.3:15447185-15447204 None:intergenic 40.0%
GCAGCGCATTTAAAGATTCA+TGG + chr2.3:15447434-15447453 MS.gene032057:CDS 40.0%
GCCATTTCAAGAAAGATAGG+GGG + chr2.3:15447997-15448016 MS.gene032057:CDS 40.0%
GCTAGGACGAAAATTCACAA+TGG - chr2.3:15444185-15444204 None:intergenic 40.0%
GCTCATAGATCCAATAAGCA+TGG + chr2.3:15449097-15449116 MS.gene032057:CDS 40.0%
GGCCTATAAGCACATTAACA+AGG + chr2.3:15448902-15448921 MS.gene032057:CDS 40.0%
GTTCACCTACGAAAACTATG+AGG + chr2.3:15449028-15449047 MS.gene032057:CDS 40.0%
GTTGATCGTAACATTGTTGG+TGG - chr2.3:15444565-15444584 None:intergenic 40.0%
TATAGGGAGCTTCGATGAAA+AGG + chr2.3:15447373-15447392 MS.gene032057:CDS 40.0%
TCAAACCAATTCGTTTGGGT+TGG + chr2.3:15444407-15444426 MS.gene032057:intron 40.0%
TCAAACCGAACCAACTCAAT+GGG - chr2.3:15445042-15445061 None:intergenic 40.0%
TCCCCCTATCTTTCTTGAAA+TGG - chr2.3:15448001-15448020 None:intergenic 40.0%
TGCTAATGCAAGGAAGTGAA+GGG - chr2.3:15447175-15447194 None:intergenic 40.0%
TGGGGATGTAATCTAACTTG+AGG - chr2.3:15448965-15448984 None:intergenic 40.0%
TTAGGCCTAAAGCAATGTCT+TGG + chr2.3:15446508-15446527 MS.gene032057:intron 40.0%
TTCAAACCGAACCAACTCAA+TGG - chr2.3:15445043-15445062 None:intergenic 40.0%
TTTCGTTTGCTTCGGCAAAA+AGG + chr2.3:15447195-15447214 MS.gene032057:CDS 40.0%
! AATTTTCGTCCTAGCATCTG+GGG + chr2.3:15444190-15444209 MS.gene032057:CDS 40.0%
! CCATTTAGTTTCCACCAAGT+AGG - chr2.3:15448515-15448534 None:intergenic 40.0%
! CCTACTTGGTGGAAACTAAA+TGG + chr2.3:15448512-15448531 MS.gene032057:CDS 40.0%
! GAATTTTCGTCCTAGCATCT+GGG + chr2.3:15444189-15444208 MS.gene032057:CDS 40.0%
! GAGTGGTTGAAGCTTACTTT+TGG + chr2.3:15447944-15447963 MS.gene032057:CDS 40.0%
! TATGAGTTGGGTGACATAAG+TGG + chr2.3:15444859-15444878 MS.gene032057:intron 40.0%
! TCGTGTTGTTCCATGCTTAT+TGG - chr2.3:15449110-15449129 None:intergenic 40.0%
! TGAATTTTCGTCCTAGCATC+TGG + chr2.3:15444188-15444207 MS.gene032057:CDS 40.0%
!! CCTTTTGTTTGAGTTTCAGG+TGG + chr2.3:15448236-15448255 MS.gene032057:intron 40.0%
!! TGAAGCTTACTTTTGGCCAT+TGG + chr2.3:15447951-15447970 MS.gene032057:CDS 40.0%
!!! GTTTTCCCATTGAGTTGGTT+CGG + chr2.3:15445034-15445053 MS.gene032057:intron 40.0%
AACACATTCAAGCACAGGCT+TGG - chr2.3:15448985-15449004 None:intergenic 45.0%
ACACATTCAAGCACAGGCTT+GGG - chr2.3:15448984-15449003 None:intergenic 45.0%
ACCACTCTATCCCTTGCATA+AGG - chr2.3:15447931-15447950 None:intergenic 45.0%
ATTGGCACAATCCTACTTGG+TGG + chr2.3:15448501-15448520 MS.gene032057:CDS 45.0%
CAAGAAAGGTCCCTTATGCA+AGG + chr2.3:15447917-15447936 MS.gene032057:CDS 45.0%
CCAAACCAACCCAAACGAAT+TGG - chr2.3:15444415-15444434 None:intergenic 45.0%
CCACTCTATCCCTTGCATAA+GGG - chr2.3:15447930-15447949 None:intergenic 45.0%
CCACTTTCATGCAATCTGGA+AGG - chr2.3:15448282-15448301 None:intergenic 45.0%
CCGAAGATGTTCAAGGAATG+TGG + chr2.3:15447399-15447418 MS.gene032057:CDS 45.0%
CCTTCCAGATTGCATGAAAG+TGG + chr2.3:15448279-15448298 MS.gene032057:CDS 45.0%
GGCTACCAAGACATTGCTTT+AGG - chr2.3:15446516-15446535 None:intergenic 45.0%
GGCTCATAAGACATAGCCAA+TGG - chr2.3:15447970-15447989 None:intergenic 45.0%
TAACACCTTGTCTCCAACCT+AGG - chr2.3:15447590-15447609 None:intergenic 45.0%
TAGGAACTCCCTTGTGTAGA+GGG - chr2.3:15447571-15447590 None:intergenic 45.0%
TCTTCACTCAAGCAATCCAG+AGG + chr2.3:15448091-15448110 MS.gene032057:CDS 45.0%
TTTCCAAACGTTAGCACGAC+GGG - chr2.3:15445918-15445937 None:intergenic 45.0%
TTTGCGTAGTACTTTGTGCG+AGG - chr2.3:15448731-15448750 None:intergenic 45.0%
! ATGTCAGGTACTGCATGTGT+GGG - chr2.3:15444154-15444173 None:intergenic 45.0%
! ATTTTCGTCCTAGCATCTGG+GGG + chr2.3:15444191-15444210 MS.gene032057:CDS 45.0%
! GAGGCTCAAAACGGTTGTTT+TGG + chr2.3:15446581-15446600 MS.gene032057:intron 45.0%
!! CCAATTCGTTTGGGTTGGTT+TGG + chr2.3:15444412-15444431 MS.gene032057:intron 45.0%
!! CTTTCAGCACACTTTTGGGT+TGG - chr2.3:15446306-15446325 None:intergenic 45.0%
!! GAGTTGCTTGATTGGCTTTC+CGG + chr2.3:15448649-15448668 MS.gene032057:CDS 45.0%
!! GTTAATGCTGCATCGGCTAT+TGG + chr2.3:15448685-15448704 MS.gene032057:CDS 45.0%
!!! GCTCAAAACGGTTGTTTTGG+TGG + chr2.3:15446584-15446603 MS.gene032057:intron 45.0%
!! AAAAAAATTATATGATAAAA+TGG - chr2.3:15446550-15446569 None:intergenic 5.0%
!!! AATTATTGATTAAAAAAAAT+TGG - chr2.3:15445308-15445327 None:intergenic 5.0%
!!! ATATTAAATAATTTTTTTTG+AGG + chr2.3:15445770-15445789 MS.gene032057:intron 5.0%
!!! TATTAAATAATTTTTTTTGA+GGG + chr2.3:15445771-15445790 MS.gene032057:intron 5.0%
!!! TATTTTTTATTATGAAATTT+TGG + chr2.3:15445948-15445967 MS.gene032057:intron 5.0%
AAAAGATCCCCCCAGATGCT+AGG - chr2.3:15444202-15444221 None:intergenic 50.0%
ACAATGGGTCGTGTGATGTC+AGG - chr2.3:15444169-15444188 None:intergenic 50.0%
ACACAAGGGAGTTCCTAGGT+TGG + chr2.3:15447574-15447593 MS.gene032057:CDS 50.0%
CACATTCAAGCACAGGCTTG+GGG - chr2.3:15448983-15449002 None:intergenic 50.0%
CCCTTATGCAAGGGATAGAG+TGG + chr2.3:15447927-15447946 MS.gene032057:CDS 50.0%
CTAGGAACTCCCTTGTGTAG+AGG - chr2.3:15447572-15447591 None:intergenic 50.0%
CTCTACACAAGGGAGTTCCT+AGG + chr2.3:15447570-15447589 MS.gene032057:CDS 50.0%
! ATTAGCTAAAGGCTGGCCCA+AGG - chr2.3:15446616-15446635 None:intergenic 50.0%
! GAGTTCCTAGGTTGGAGACA+AGG + chr2.3:15447582-15447601 MS.gene032057:CDS 50.0%
! GATGTCAGGTACTGCATGTG+TGG - chr2.3:15444155-15444174 None:intergenic 50.0%
! GGTTCGGTTTGAATACCCCT+AGG + chr2.3:15445050-15445069 MS.gene032057:intron 50.0%
! TTAGCTAAAGGCTGGCCCAA+GGG - chr2.3:15446615-15446634 None:intergenic 50.0%
! TTTTCGTCCTAGCATCTGGG+GGG + chr2.3:15444192-15444211 MS.gene032057:CDS 50.0%
!! CAACAGTGTGGTTCGGTTTG+TGG - chr2.3:15444935-15444954 None:intergenic 50.0%
!! GTTTTGGTGGCCTTACCCTT+GGG + chr2.3:15446597-15446616 MS.gene032057:intron 50.0%
!!! TGTTTTGGTGGCCTTACCCT+TGG + chr2.3:15446596-15446615 MS.gene032057:intron 50.0%
AAACGTTAGCACGACGGGCA+CGG - chr2.3:15445913-15445932 None:intergenic 55.0%
ATCGGCTATTGGCAGACTCG+CGG + chr2.3:15448696-15448715 MS.gene032057:CDS 55.0%
! TAAAGGCTGGCCCAAGGGTA+AGG - chr2.3:15446610-15446629 None:intergenic 55.0%
GTGCCCGTCGTGCTAACGTT+TGG + chr2.3:15445912-15445931 MS.gene032057:intron 60.0%


Chromosome Type Strat End Strand Name
chr2.3 gene 15444136 15449133 15444136 ID=MS.gene032057
chr2.3 mRNA 15444136 15449133 15444136 ID=MS.gene032057.t1;Parent=MS.gene032057
chr2.3 exon 15444136 15444246 15444136 ID=MS.gene032057.t1.exon1;Parent=MS.gene032057.t1
chr2.3 CDS 15444136 15444246 15444136 ID=cds.MS.gene032057.t1;Parent=MS.gene032057.t1
chr2.3 exon 15446952 15447234 15446952 ID=MS.gene032057.t1.exon2;Parent=MS.gene032057.t1
chr2.3 CDS 15446952 15447234 15446952 ID=cds.MS.gene032057.t1;Parent=MS.gene032057.t1
chr2.3 exon 15447348 15447723 15447348 ID=MS.gene032057.t1.exon3;Parent=MS.gene032057.t1
chr2.3 CDS 15447348 15447723 15447348 ID=cds.MS.gene032057.t1;Parent=MS.gene032057.t1
chr2.3 exon 15447894 15448112 15447894 ID=MS.gene032057.t1.exon4;Parent=MS.gene032057.t1
chr2.3 CDS 15447894 15448112 15447894 ID=cds.MS.gene032057.t1;Parent=MS.gene032057.t1
chr2.3 exon 15448255 15448396 15448255 ID=MS.gene032057.t1.exon5;Parent=MS.gene032057.t1
chr2.3 CDS 15448255 15448396 15448255 ID=cds.MS.gene032057.t1;Parent=MS.gene032057.t1
chr2.3 exon 15448493 15448738 15448493 ID=MS.gene032057.t1.exon6;Parent=MS.gene032057.t1
chr2.3 CDS 15448493 15448738 15448493 ID=cds.MS.gene032057.t1;Parent=MS.gene032057.t1
chr2.3 exon 15448828 15449133 15448828 ID=MS.gene032057.t1.exon7;Parent=MS.gene032057.t1
chr2.3 CDS 15448828 15449133 15448828 ID=cds.MS.gene032057.t1;Parent=MS.gene032057.t1
Gene Sequence

>MS.gene032057

ATGTCTGTTGTAGCTCCCACACATGCAGTACCTGACATCACACGACCCATTGTGAATTTTCGTCCTAGCATCTGGGGGGATCTTTTTCTTCAATATGATTCACAATCATCGGTACTATATTTATATATGCAATTTACGTACATATGTTTTTATGGGTGTTGTTTAGGGATGTTTGCAGTGCAATTTAGTTCGATTTTGAAGCGCAAAGTCATTTGAACCGTAAAACATGAAGTTTAGTTTGATTATGTTGACTTTTGAAATGAAAATCGAATCAAACCAATTCGTTTGGGTTGGTTTGGTTGTTGCGATTTTCTTTCTTTGCGACAATACAATTTTTTGTTTCCAATATTAAAATCAAGTTAAAAGTTAAAAACAACTTAATTTTAACAATGTTTCAAATTTGTTCTAATATTACAATTTTATTTTCCACCAACAATGTTACGATCAACATAGAACAAATTAAAAACATGGACCGAAAAACGGTTTTCTTCGATAAGAAATGCAAATTACTATGATTTTATCATTTTTTAAAAGGTCTCATTGAGTTTCTATAATTCAAGATATATCTAACATAAACATATATTGAAAAGTGCAAGTAGAATTAAGTCAAAGTACGTAAATACAATTTAAAAGCATAGAAGAAATTTGACAAGAGAAAAAACATGTCTTAGTAGAAAAAAAGAGAGAAAACATGTCATTCTATAAAAATTTTCATTGAATTTCTATGAGTTGGGTGACATAAGTGGAATTAGTGTTTCTCTTATGTTGTGGTTTAGTTTGGTTGTTAAAATAAAAACCACAAACCGAACCACACTGTTGAGTTAAAAACTGATCCGAATACATATCTGAATCAAATGAAGTTTTTTGAGGTTTTCGGTTTGAATTAGTTCGGTTTGAAGTTTTCCCATTGAGTTGGTTCGGTTTGAATACCCCTAGGACTGTTGTTATACTATTGTAGTATTTTTCATGAAATATTATATTACTATAAAAAGAAATTATGACAAATTTAATCAAAGAAATAATGTTATAAAAGTTTAATTTTGAAATTATGAATAAGTGATCATATGTAGTTTTGATACACGGTACAATTTTTTGTTTATTTTTTATTGATAAAATTTTCATAGTGGTTCGAGGAGATAGTCAGATAGCAACTAATTAAGATAACTGTGCCAATTTTTTTTAATCAATAATTGTGTCAATTATTCACTAGAAGTTAAGCTGTTTTGGTTTATGTTGGTTTGATTTTTGGATGCATTCAATTTTTTCCTTTTTCTTTTTGTTTTTCTTTTCTCATTCGTTTTGCTCTTTGTAATGGGATAGAGTACCTTATGTTTTTAAGTTTCACTAGAAGTACCATCAAGATTAAAGAGTCAGCAGCAGTTTGTATAGTTTTACGTGCTTAGTTATAAGTATGATTAAAGAAAATGTGTATAACAAATTATAAAAAGAATTTCCATTATGATTTGGTTAGTGTAAGAACTTTGATGTTTGACTTAATTATATTCTAGGTCAAATTTAAGTTTCGCTTTGTTTTTTAGGTTATTTTCGTTTCATTTTGGTCCTTTATGTTAAAAACGTTAAACAATTTGCACGTTTAAGTTTTTTTTGTTTCATTTTGGTCACGTAACTTATAAATATTAAATAATTTTTTTTGAGGGAAATAAATATTAAATATTTTAATCTTTTAAGCTATAAATTTTAATATTTTCTTCTTAAATATTAAGATTATGCCTTGTTGAAACTCATTATAGTACACTAGCAAAAAACGGGCACTCCGTGCCCGTCGTGCTAACGTTTGGAAATTATGAACGGTATTTTTTATTATGAAATTTTGGTTTTGATTAAAAGTAAAAATATGAATATTTGTTGTTTTTTTTAATGACACGAACAACAATCTTTATTATAGAAAAAGTTGTTTAAGAGTATAATTAGAATAATGAAAAAGTAAGTATAAATATACTCATCTAGTTTGTTATACTTTTTAAATGGTAAAGGAAAATATATGTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATCGTGTTTGTTACATTTGTTTTAATATTTAAATCTATTCTTATCTATTTCTTACTTGTGTTACTTGTATTTAAAATTAAGGGTATTTTTGGAAAAAAAAATTCCAACCCAAAAGTGTGCTGAAAGTGATAGTTTCCTTTATATATAGTATAGATTTAGTAAAATTACTAGAATATAAAGCCTTTTTATGAAGCGAATGTTAGATGATATTTTATTAATTTTAGTAGAATATGAGACTTTTTATCAAGAAAATTTGTATCAATAGTAGGAGATTAGCCATTTTATCAGGTAATCTTTTCATAATTTTTTTAGGCCTAAAGCAATGTCTTGGTAGCCTTACGCTTGAGCCATTTTATCATATAATTTTTTTCATATTTTTTTGAGGCTCAAAACGGTTGTTTTGGTGGCCTTACCCTTGGGCCAGCCTTTAGCTAATTAATGAAGATTTATTTGTGAAATTAATATTTTACATTCAGTTATTTATTTGTGAAAAAAAAGAAGTAAAAAGTAAAGGTCCAATTCACTAAATTTCCTTATAAATGTGGAATTGTCATAGAGAAAGACGACCCCCTCTAATTTCCATAAATATTTCAAACCTAAATTTTTTAGTACATATGATGAAGCTAATCAGTTATCCACATAACCAAGCTTTTATCTAAATAGTTATATAGAAATCTAAATGCTCTTGTACCAAAAAAAGAAAAGAAATCTAAATGCTCACTAAACATTTCATTCCTTGTGACAAATTGCAGGAAATCGATGACAATATGAAGAAACAAGTACAAATGCAAAAAGAGGAAGTTAGGAAGATTTTACAATCTTCAAGCAATATTATCTCACAGCAACTAAACTTCATTGATTCATTGCAACGTTTGGGAATATCTTATCATTTTGAACATGAAATTGATGAAGCATTAGAACAAATCAAGAATACTTTTACCAACAATAAGGAAATAACTACGAAAGAAGGTTCCCTTCACTTCCTTGCATTAGCATTTCGTTTGCTTCGGCAAAAAGGACATCGCATTTCATCGGGTATGTAGAATTTTACTTACCATATTTACTTTTACAACAAAATTTACTAGCCATTATTCATGTTACAAACATAGAATCTTAATAATCGCAAAGCAATCTCATAATTTTGACAGATATATTTAAAAAATTCAAGAGCAATATAGGGAGCTTCGATGAAAAGGTTTCCGAAGATGTTCAAGGAATGTGGAGCTTGTATGAAGCAGCGCATTTAAAGATTCATGGAGAAGATATATTAGACGAAGCACTTGATTTCACACATGCTCACCTTAGTTCCAAGACTTCCATTCAATTGAGTACTTTTCTTGATGCACAAGTAAGACAATGCTTAAAGAACCCTCTACACAAGGGAGTTCCTAGGTTGGAGACAAGGTGTTACATATCTTCCTATGAAGAAGATCCTTCCCATAGTAAAATTCTTCTAAACTTTGCCAAATTAGATTTCAACATGCTACAGAAAATGCATCAAAAAGAACTTGCCAGTATCACCAAGTAAGTATTGCAAAATGTACTCATTTTTTGAATATAAGGAAAATCACAATTCACAATCAACCATTTTGTGACCGCAAATTAAAATCTTGATCTATGACTCGTTACATTCTTATTAAACAACGGTTGATCAACTTTTAATCGATATGATATCACTTGTATTTATATCACAGGTGGTGGAAAAAGTCAGACTTTGCAAGAAAGGTCCCTTATGCAAGGGATAGAGTGGTTGAAGCTTACTTTTGGCCATTGGCTATGTCTTATGAGCCTAAATATGCCATTTCAAGAAAGATAGGGGGAAAATTGGTAGCATGTATTTCTCTTTTAGATGATACTTATGATGCCTTTGGCACAGTTGAAGAACTTGAACTCTTCACTCAAGCAATCCAGAGGTTTATTTGAATCCAAAGAGATTGACAAACTTATTTTATATTATCTTTCCACAATTATCTATTCTTGACATTGACCTAATCTTATGATTTTTTTTTCTTTCTACATTTTTTTGCCCTAATTCTCCTTTTGTTTGAGTTTCAGGTGGGATTTTAGTCTCATTCAACCCCTTCCAGATTGCATGAAAGTGGTATTTAATACAATAGTAGAACTATGGGATGAAATTGAGATGATATTATTAGAGACTGGAAAATCAAATTTGGTGCTACAATATATTAAACAAGCTGTAGGTTTCCAATTCCTATAAATATTTCAAAACTGATCAATGATGATTTTAGTCATTCAGTACTTAATTATCATCAATATTTTGATTAATTTACAGTTCTATAAATTGGCACAATCCTACTTGGTGGAAACTAAATGGGGCAATGAAGGAATTATACCAACATATGATGAATATAAAGCTAATGGACTTATATCTTCTACAATCCCACTTTCAATAATATCTTTTGTTGGGCTTGGAGAATTTTCAAATGAAGAGTTGCTTGATTGGCTTTCCGGTGACCCAACAATCGTTAATGCTGCATCGGCTATTGGCAGACTCGCGGATGATGTATCCTCGCACAAAGTACTACGCAAATTTTTTGTTAATTTGCATTTTTGTGTTTATTATGGCATGAGCTATCTAACAGAGCTTTATTCATTATAAATATACAGTTTGAGCAGCAAAGGGTGCATGTTGCTTCAGCAGTTGAATGTTGCATGAAGCAATACAACATGTCACAAGAAGAGGCCTATAAGCACATTAACAAGGACATTGAAGATTTTTGGATGGATATAAATGAAGAGTGCCTCAAGTTAGATTACATCCCCAAGCCTGTGCTTGAATGTGTTCTTAATGTGGTGCGAATAACCGAGTTCACCTACGAAAACTATGAGGATAAATACACAAATGGGGAATTGTTGAAAGATTATGTTGTTGCACTGCTCATAGATCCAATAAGCATGGAACAACACGAGTAA
Protein sequence

>MS.gene032057.t1

MSVVAPTHAVPDITRPIVNFRPSIWGDLFLQYDSQSSEIDDNMKKQVQMQKEEVRKILQSSSNIISQQLNFIDSLQRLGISYHFEHEIDEALEQIKNTFTNNKEITTKEGSLHFLALAFRLLRQKGHRISSDIFKKFKSNIGSFDEKVSEDVQGMWSLYEAAHLKIHGEDILDEALDFTHAHLSSKTSIQLSTFLDAQVRQCLKNPLHKGVPRLETRCYISSYEEDPSHSKILLNFAKLDFNMLQKMHQKELASITKWWKKSDFARKVPYARDRVVEAYFWPLAMSYEPKYAISRKIGGKLVACISLLDDTYDAFGTVEELELFTQAIQRWDFSLIQPLPDCMKVVFNTIVELWDEIEMILLETGKSNLVLQYIKQAFYKLAQSYLVETKWGNEGIIPTYDEYKANGLISSTIPLSIISFVGLGEFSNEELLDWLSGDPTIVNAASAIGRLADDVSSHKFEQQRVHVASAVECCMKQYNMSQEEAYKHINKDIEDFWMDINEECLKLDYIPKPVLECVLNVVRITEFTYENYEDKYTNGELLKDYVVALLIDPISMEQHE