Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene52084.t1 | XP_013456495.1 | 99 | 192 | 2 | 0 | 1 | 192 | 1 | 192 | 1.80E-103 | 385.2 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene52084.t1 | Q84TH6 | 58.7 | 179 | 73 | 1 | 13 | 191 | 10 | 187 | 5.2e-59 | 228.8 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene52084.t1 | A0A072UMB1 | 99.0 | 192 | 2 | 0 | 1 | 192 | 1 | 192 | 1.3e-103 | 385.2 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049298 | MS.gene52084 | 0.825913 | 3.62E-54 | -1.69E-46 |
MS.gene050338 | MS.gene52084 | 0.801381 | 9.25E-49 | -1.69E-46 |
MS.gene050444 | MS.gene52084 | -0.820164 | 7.93E-53 | -1.69E-46 |
MS.gene050710 | MS.gene52084 | 0.81461 | 1.41E-51 | -1.69E-46 |
MS.gene050809 | MS.gene52084 | 0.821944 | 3.08E-53 | -1.69E-46 |
MS.gene051552 | MS.gene52084 | 0.804856 | 1.77E-49 | -1.69E-46 |
MS.gene052129 | MS.gene52084 | 0.802164 | 6.39E-49 | -1.69E-46 |
MS.gene053920 | MS.gene52084 | 0.828209 | 1.02E-54 | -1.69E-46 |
MS.gene054941 | MS.gene52084 | 0.833386 | 5.49E-56 | -1.69E-46 |
MS.gene05652 | MS.gene52084 | 0.805924 | 1.06E-49 | -1.69E-46 |
MS.gene056678 | MS.gene52084 | 0.819567 | 1.09E-52 | -1.69E-46 |
MS.gene056688 | MS.gene52084 | 0.820678 | 6.04E-53 | -1.69E-46 |
MS.gene056697 | MS.gene52084 | 0.815737 | 7.93E-52 | -1.69E-46 |
MS.gene056856 | MS.gene52084 | 0.810218 | 1.29E-50 | -1.69E-46 |
MS.gene057717 | MS.gene52084 | 0.972765 | 2.65E-135 | -1.69E-46 |
MS.gene058067 | MS.gene52084 | 0.825029 | 5.86E-54 | -1.69E-46 |
MS.gene058158 | MS.gene52084 | 0.824947 | 6.12E-54 | -1.69E-46 |
MS.gene058418 | MS.gene52084 | 0.802719 | 4.91E-49 | -1.69E-46 |
MS.gene059069 | MS.gene52084 | 0.804305 | 2.30E-49 | -1.69E-46 |
MS.gene05926 | MS.gene52084 | 0.853986 | 1.66E-61 | -1.69E-46 |
MS.gene05960 | MS.gene52084 | 0.810725 | 9.99E-51 | -1.69E-46 |
MS.gene060405 | MS.gene52084 | 0.830471 | 2.88E-55 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene55766 | MS.gene52084 | PPI |
MS.gene52084 | MS.gene06033 | PPI |
MS.gene068294 | MS.gene52084 | PPI |
MS.gene33679 | MS.gene52084 | PPI |
MS.gene24973 | MS.gene52084 | PPI |
MS.gene52084 | MS.gene46462 | PPI |
MS.gene52084 | MS.gene034592 | PPI |
MS.gene068578 | MS.gene52084 | PPI |
MS.gene39163 | MS.gene52084 | PPI |
MS.gene33424 | MS.gene52084 | PPI |
MS.gene068291 | MS.gene52084 | PPI |
MS.gene048891 | MS.gene52084 | PPI |
MS.gene55764 | MS.gene52084 | PPI |
MS.gene33681 | MS.gene52084 | PPI |
MS.gene06035 | MS.gene52084 | PPI |
MS.gene52084 | MS.gene33426 | PPI |
MS.gene33680 | MS.gene52084 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene52084.t1 | MTR_4g073950 | 98.958 | 192 | 2 | 0 | 1 | 192 | 1 | 192 | 1.71e-143 | 397 |
MS.gene52084.t1 | MTR_4g013350 | 56.579 | 152 | 65 | 1 | 41 | 192 | 47 | 197 | 5.65e-61 | 188 |
MS.gene52084.t1 | MTR_4g013330 | 54.248 | 153 | 69 | 1 | 41 | 192 | 47 | 199 | 4.05e-59 | 184 |
MS.gene52084.t1 | MTR_4g013320 | 53.947 | 152 | 69 | 1 | 41 | 192 | 49 | 199 | 2.31e-57 | 179 |
MS.gene52084.t1 | MTR_4g013345 | 53.947 | 152 | 69 | 1 | 41 | 192 | 46 | 196 | 6.76e-57 | 178 |
MS.gene52084.t1 | MTR_4g013325 | 52.055 | 146 | 69 | 1 | 47 | 192 | 55 | 199 | 4.25e-54 | 171 |
MS.gene52084.t1 | MTR_7g093820 | 47.692 | 195 | 96 | 4 | 3 | 192 | 1 | 194 | 1.14e-51 | 164 |
MS.gene52084.t1 | MTR_7g093830 | 52.288 | 153 | 71 | 2 | 41 | 192 | 42 | 193 | 2.02e-51 | 164 |
MS.gene52084.t1 | MTR_4g013335 | 49.342 | 152 | 74 | 1 | 41 | 192 | 48 | 196 | 3.94e-51 | 163 |
MS.gene52084.t1 | MTR_7g093850 | 50.980 | 153 | 73 | 2 | 41 | 192 | 43 | 194 | 1.59e-50 | 162 |
MS.gene52084.t1 | MTR_1g054525 | 50.658 | 152 | 72 | 2 | 41 | 192 | 44 | 192 | 1.40e-49 | 159 |
MS.gene52084.t1 | MTR_7g070390 | 47.647 | 170 | 82 | 2 | 23 | 192 | 30 | 192 | 2.06e-49 | 159 |
MS.gene52084.t1 | MTR_4g013385 | 44.444 | 153 | 83 | 1 | 40 | 192 | 40 | 190 | 2.02e-45 | 149 |
MS.gene52084.t1 | MTR_0433s0040 | 44.444 | 153 | 83 | 1 | 40 | 192 | 40 | 190 | 2.02e-45 | 149 |
MS.gene52084.t1 | MTR_7g093790 | 47.059 | 153 | 79 | 2 | 41 | 192 | 40 | 191 | 2.40e-45 | 148 |
MS.gene52084.t1 | MTR_4g074020 | 78.313 | 83 | 18 | 0 | 3 | 85 | 1 | 83 | 1.93e-44 | 143 |
MS.gene52084.t1 | MTR_3g105640 | 46.053 | 152 | 81 | 1 | 42 | 192 | 37 | 188 | 2.04e-44 | 146 |
MS.gene52084.t1 | MTR_4g013310 | 47.020 | 151 | 77 | 2 | 42 | 192 | 50 | 197 | 3.22e-44 | 145 |
MS.gene52084.t1 | MTR_7g093870 | 41.818 | 165 | 92 | 2 | 32 | 192 | 29 | 193 | 9.19e-43 | 142 |
MS.gene52084.t1 | MTR_4g013770 | 42.105 | 152 | 88 | 0 | 41 | 192 | 40 | 191 | 1.10e-42 | 142 |
MS.gene52084.t1 | MTR_1g056370 | 42.208 | 154 | 86 | 2 | 39 | 191 | 34 | 185 | 1.27e-42 | 141 |
MS.gene52084.t1 | MTR_5g096120 | 45.033 | 151 | 78 | 3 | 46 | 192 | 40 | 189 | 5.55e-40 | 134 |
MS.gene52084.t1 | MTR_3g105630 | 38.542 | 192 | 110 | 4 | 4 | 192 | 3 | 189 | 3.40e-38 | 130 |
MS.gene52084.t1 | MTR_4g078885 | 38.667 | 150 | 89 | 1 | 43 | 192 | 39 | 185 | 5.61e-35 | 122 |
MS.gene52084.t1 | MTR_3g034030 | 37.333 | 150 | 91 | 1 | 43 | 192 | 39 | 185 | 2.40e-33 | 117 |
MS.gene52084.t1 | MTR_4g013355 | 40.260 | 154 | 79 | 3 | 40 | 192 | 38 | 179 | 9.96e-33 | 115 |
MS.gene52084.t1 | MTR_4g122110 | 39.216 | 153 | 92 | 1 | 40 | 192 | 29 | 180 | 5.26e-30 | 108 |
MS.gene52084.t1 | MTR_4g122130 | 37.580 | 157 | 96 | 2 | 36 | 192 | 26 | 180 | 1.91e-28 | 105 |
MS.gene52084.t1 | MTR_4g049550 | 32.432 | 148 | 99 | 1 | 42 | 189 | 29 | 175 | 1.80e-18 | 79.0 |
MS.gene52084.t1 | MTR_8g099115 | 32.624 | 141 | 87 | 3 | 38 | 171 | 29 | 168 | 5.05e-18 | 78.2 |
MS.gene52084.t1 | MTR_4g049570 | 31.944 | 144 | 97 | 1 | 46 | 189 | 33 | 175 | 8.29e-18 | 77.4 |
MS.gene52084.t1 | MTR_8g099135 | 29.240 | 171 | 97 | 4 | 8 | 171 | 11 | 164 | 3.08e-15 | 70.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene52084.t1 | AT2G21100 | 57.895 | 190 | 76 | 3 | 3 | 191 | 1 | 187 | 2.08e-79 | 235 |
MS.gene52084.t1 | AT2G21100 | 57.895 | 190 | 76 | 3 | 3 | 191 | 1 | 187 | 2.08e-79 | 235 |
MS.gene52084.t1 | AT1G58170 | 47.853 | 163 | 80 | 2 | 34 | 192 | 24 | 185 | 2.75e-50 | 161 |
MS.gene52084.t1 | AT5G42510 | 52.258 | 155 | 71 | 2 | 37 | 191 | 31 | 182 | 1.06e-49 | 159 |
MS.gene52084.t1 | AT5G49040 | 42.857 | 189 | 101 | 3 | 10 | 192 | 4 | 191 | 4.65e-48 | 155 |
MS.gene52084.t1 | AT5G42500 | 50.649 | 154 | 73 | 2 | 38 | 191 | 35 | 185 | 2.61e-47 | 153 |
MS.gene52084.t1 | AT1G55210 | 46.053 | 152 | 78 | 1 | 41 | 192 | 40 | 187 | 6.32e-47 | 152 |
MS.gene52084.t1 | AT1G55210 | 46.053 | 152 | 78 | 1 | 41 | 192 | 40 | 187 | 6.32e-47 | 152 |
MS.gene52084.t1 | AT3G13650 | 39.683 | 189 | 100 | 3 | 8 | 192 | 8 | 186 | 1.92e-46 | 151 |
MS.gene52084.t1 | AT1G65870 | 46.452 | 155 | 82 | 1 | 37 | 191 | 36 | 189 | 2.22e-44 | 146 |
MS.gene52084.t1 | AT1G22900 | 46.452 | 155 | 80 | 2 | 37 | 191 | 42 | 193 | 2.55e-43 | 143 |
MS.gene52084.t1 | AT2G21110 | 46.452 | 155 | 80 | 1 | 41 | 192 | 32 | 186 | 1.76e-42 | 141 |
MS.gene52084.t1 | AT3G13662 | 44.604 | 139 | 73 | 1 | 41 | 179 | 38 | 172 | 7.11e-40 | 134 |
MS.gene52084.t1 | AT3G13660 | 49.565 | 115 | 58 | 0 | 78 | 192 | 11 | 125 | 1.69e-38 | 129 |
MS.gene52084.t1 | AT5G49030 | 47.826 | 138 | 71 | 1 | 41 | 178 | 41 | 177 | 3.20e-37 | 137 |
MS.gene52084.t1 | AT4G38700 | 39.744 | 156 | 89 | 3 | 42 | 192 | 35 | 190 | 7.57e-37 | 127 |
MS.gene52084.t1 | AT3G58090 | 49.541 | 109 | 55 | 0 | 83 | 191 | 163 | 271 | 1.28e-30 | 113 |
MS.gene52084.t1 | AT4G11210 | 36.458 | 96 | 60 | 1 | 80 | 175 | 72 | 166 | 1.11e-13 | 66.6 |
MS.gene52084.t1 | AT4G11190 | 30.709 | 127 | 86 | 2 | 50 | 175 | 41 | 166 | 4.91e-11 | 59.3 |
Find 50 sgRNAs with CRISPR-Local
Find 55 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CGGCCCACGAGCTTGGATTT+TGG | 0.153982 | 4.1:-29851089 | None:intergenic |
GGATCAGATGTTTCAGTTAA+AGG | 0.192736 | 4.1:-29851068 | None:intergenic |
TGAATTTAAAAGCAGGGAAT+TGG | 0.267666 | 4.1:+29850880 | MS.gene52084:CDS |
TTTAAATTCAAGCTTTGAAT+TGG | 0.322119 | 4.1:-29850867 | None:intergenic |
GGTAGCACATTTGCTCTTGT+TGG | 0.341517 | 4.1:+29851200 | MS.gene52084:CDS |
GAACTGTGTAAGGTATGTTT+TGG | 0.344125 | 4.1:-29851021 | None:intergenic |
ATGCCTGTTGTTGGAGGTAC+TGG | 0.347518 | 4.1:+29851254 | MS.gene52084:CDS |
GAATTTAAAAGCAGGGAATT+GGG | 0.356220 | 4.1:+29850881 | MS.gene52084:CDS |
TCAGCCACCTTGATCGCGCT+TGG | 0.357391 | 4.1:-29850984 | None:intergenic |
ATGCCATTGCTAAGACTCAT+TGG | 0.400986 | 4.1:+29851300 | MS.gene52084:CDS |
TTTGTGGATGGGCCGTATAA+TGG | 0.409954 | 4.1:+29851179 | MS.gene52084:CDS |
CAGCCACCTTGATCGCGCTT+GGG | 0.411876 | 4.1:-29850983 | None:intergenic |
GCAAATGTGCTACCATTATA+CGG | 0.416384 | 4.1:-29851191 | None:intergenic |
TTGAGCTACTCCTTTGTGGA+TGG | 0.418314 | 4.1:+29851167 | MS.gene52084:CDS |
TCATCGTGTCAGCAGGAGAT+TGG | 0.421466 | 4.1:+29851131 | MS.gene52084:CDS |
GTCGTTGAGCTACTCCTTTG+TGG | 0.422168 | 4.1:+29851163 | MS.gene52084:CDS |
ACAACAGGCATCTCACGAAC+CGG | 0.432988 | 4.1:-29851242 | None:intergenic |
AAATTCAAGCTTTGAATTGG+TGG | 0.434298 | 4.1:-29850864 | None:intergenic |
TTGTGCTCGGCCCACGAGCT+TGG | 0.436650 | 4.1:-29851096 | None:intergenic |
CATCGTGTCAGCAGGAGATT+GGG | 0.452951 | 4.1:+29851132 | MS.gene52084:CDS |
GTTCGTGAGATGCCTGTTGT+TGG | 0.459287 | 4.1:+29851245 | MS.gene52084:CDS |
CATTGGATTGATATTACTAC+TGG | 0.460050 | 4.1:+29851317 | MS.gene52084:CDS |
TAATGTTTCCGAACTGTGTA+AGG | 0.464436 | 4.1:-29851031 | None:intergenic |
ACTACTGGTGATGCTATTGT+TGG | 0.469577 | 4.1:+29851332 | MS.gene52084:CDS |
TCACGAACCGGGTTCATAGC+AGG | 0.470658 | 4.1:-29851230 | None:intergenic |
CAAAGCTTGAATTTAAAAGC+AGG | 0.474536 | 4.1:+29850873 | MS.gene52084:CDS |
AAAACATACCTTACACAGTT+CGG | 0.481108 | 4.1:+29851023 | MS.gene52084:CDS |
TGTCGTGGAAATAGAATTGA+AGG | 0.486021 | 4.1:-29850944 | None:intergenic |
TGAGCTACTCCTTTGTGGAT+GGG | 0.497718 | 4.1:+29851168 | MS.gene52084:CDS |
AGTCCAGTACCTCCAACAAC+AGG | 0.500575 | 4.1:-29851257 | None:intergenic |
TTCAAGCTTTGAATTGGTGG+TGG | 0.503760 | 4.1:-29850861 | None:intergenic |
TTACGCGTCATCGTGTCAGC+AGG | 0.513526 | 4.1:+29851124 | MS.gene52084:CDS |
AAAGCTTGAATTTAAAAGCA+GGG | 0.524166 | 4.1:+29850874 | MS.gene52084:CDS |
CGTGAGATGCCTGTTGTTGG+AGG | 0.525744 | 4.1:+29851248 | MS.gene52084:CDS |
TGGCATAACCCCTTGCCATA+CGG | 0.526929 | 4.1:-29851283 | None:intergenic |
TATTTCCACGACACACTAAG+TGG | 0.531204 | 4.1:+29850954 | MS.gene52084:CDS |
AAGCTCGTGGGCCGAGCACA+AGG | 0.551866 | 4.1:+29851098 | MS.gene52084:CDS |
ACAGTTCGGAAACATTATGA+TGG | 0.564400 | 4.1:+29851037 | MS.gene52084:CDS |
AATTTAAAAGCAGGGAATTG+GGG | 0.569985 | 4.1:+29850882 | MS.gene52084:CDS |
CACGAACCGGGTTCATAGCA+GGG | 0.575135 | 4.1:-29851229 | None:intergenic |
TGATCCAAAATCCAAGCTCG+TGG | 0.590503 | 4.1:+29851085 | MS.gene52084:CDS |
CAACAGGCATCTCACGAACC+GGG | 0.593590 | 4.1:-29851241 | None:intergenic |
ACGCGTAAATACCTTGTGCT+CGG | 0.608058 | 4.1:-29851109 | None:intergenic |
AAAGAACCCTGCTATGAACC+CGG | 0.622651 | 4.1:+29851223 | MS.gene52084:CDS |
GATCCAAAATCCAAGCTCGT+GGG | 0.650480 | 4.1:+29851086 | MS.gene52084:CDS |
AATCCAATGAGTCTTAGCAA+TGG | 0.659713 | 4.1:-29851303 | None:intergenic |
ATGCTATTAATAATGAACGA+GGG | 0.668500 | 4.1:-29851366 | None:intergenic |
ATTATACGGCCCATCCACAA+AGG | 0.683112 | 4.1:-29851177 | None:intergenic |
AAACCCAAGCGCGATCAAGG+TGG | 0.710921 | 4.1:+29850980 | MS.gene52084:CDS |
AATGCTATTAATAATGAACG+AGG | 0.719484 | 4.1:-29851367 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTTAAATTCAAGCTTTGAAT+TGG | - | chr4.1:29850870-29850889 | None:intergenic | 20.0% |
! | AAAGCTTGAATTTAAAAGCA+GGG | + | chr4.1:29850874-29850893 | MS.gene52084:CDS | 25.0% |
AAAACATACCTTACACAGTT+CGG | + | chr4.1:29851023-29851042 | MS.gene52084:CDS | 30.0% | |
AATTTAAAAGCAGGGAATTG+GGG | + | chr4.1:29850882-29850901 | MS.gene52084:CDS | 30.0% | |
CAAAGCTTGAATTTAAAAGC+AGG | + | chr4.1:29850873-29850892 | MS.gene52084:CDS | 30.0% | |
CATTGGATTGATATTACTAC+TGG | + | chr4.1:29851317-29851336 | MS.gene52084:CDS | 30.0% | |
GAATTTAAAAGCAGGGAATT+GGG | + | chr4.1:29850881-29850900 | MS.gene52084:CDS | 30.0% | |
TGAATTTAAAAGCAGGGAAT+TGG | + | chr4.1:29850880-29850899 | MS.gene52084:CDS | 30.0% | |
!! | AAATTCAAGCTTTGAATTGG+TGG | - | chr4.1:29850867-29850886 | None:intergenic | 30.0% |
AATCCAATGAGTCTTAGCAA+TGG | - | chr4.1:29851306-29851325 | None:intergenic | 35.0% | |
ACAGTTCGGAAACATTATGA+TGG | + | chr4.1:29851037-29851056 | MS.gene52084:CDS | 35.0% | |
GCAAATGTGCTACCATTATA+CGG | - | chr4.1:29851194-29851213 | None:intergenic | 35.0% | |
GGATCAGATGTTTCAGTTAA+AGG | - | chr4.1:29851071-29851090 | None:intergenic | 35.0% | |
TAATGTTTCCGAACTGTGTA+AGG | - | chr4.1:29851034-29851053 | None:intergenic | 35.0% | |
TGTCGTGGAAATAGAATTGA+AGG | - | chr4.1:29850947-29850966 | None:intergenic | 35.0% | |
! | GAACTGTGTAAGGTATGTTT+TGG | - | chr4.1:29851024-29851043 | None:intergenic | 35.0% |
!!! | TATGTTTTGGTCTTGTCTAC+AGG | - | chr4.1:29851011-29851030 | None:intergenic | 35.0% |
ATGCCATTGCTAAGACTCAT+TGG | + | chr4.1:29851300-29851319 | MS.gene52084:CDS | 40.0% | |
TATTTCCACGACACACTAAG+TGG | + | chr4.1:29850954-29850973 | MS.gene52084:CDS | 40.0% | |
! | ACTACTGGTGATGCTATTGT+TGG | + | chr4.1:29851332-29851351 | MS.gene52084:CDS | 40.0% |
! | TTTTTCCACTTAGTGTGTCG+TGG | - | chr4.1:29850962-29850981 | None:intergenic | 40.0% |
!! | TTCAAGCTTTGAATTGGTGG+TGG | - | chr4.1:29850864-29850883 | None:intergenic | 40.0% |
AAAAAACCCAAGCGCGATCA+AGG | + | chr4.1:29850977-29850996 | MS.gene52084:CDS | 45.0% | |
AAAGAACCCTGCTATGAACC+CGG | + | chr4.1:29851223-29851242 | MS.gene52084:CDS | 45.0% | |
ACGCGTAAATACCTTGTGCT+CGG | - | chr4.1:29851112-29851131 | None:intergenic | 45.0% | |
ATTATACGGCCCATCCACAA+AGG | - | chr4.1:29851180-29851199 | None:intergenic | 45.0% | |
GATCCAAAATCCAAGCTCGT+GGG | + | chr4.1:29851086-29851105 | MS.gene52084:CDS | 45.0% | |
GGTAGCACATTTGCTCTTGT+TGG | + | chr4.1:29851200-29851219 | MS.gene52084:CDS | 45.0% | |
TGAGCTACTCCTTTGTGGAT+GGG | + | chr4.1:29851168-29851187 | MS.gene52084:CDS | 45.0% | |
TGATCCAAAATCCAAGCTCG+TGG | + | chr4.1:29851085-29851104 | MS.gene52084:CDS | 45.0% | |
TTGAGCTACTCCTTTGTGGA+TGG | + | chr4.1:29851167-29851186 | MS.gene52084:CDS | 45.0% | |
TTTGTGGATGGGCCGTATAA+TGG | + | chr4.1:29851179-29851198 | MS.gene52084:CDS | 45.0% | |
! | TGGACTTTTCCGTATGGCAA+GGG | + | chr4.1:29851274-29851293 | MS.gene52084:CDS | 45.0% |
!!! | AGGTACTGGACTTTTCCGTA+TGG | + | chr4.1:29851268-29851287 | MS.gene52084:CDS | 45.0% |
ACAACAGGCATCTCACGAAC+CGG | - | chr4.1:29851245-29851264 | None:intergenic | 50.0% | |
AGTCCAGTACCTCCAACAAC+AGG | - | chr4.1:29851260-29851279 | None:intergenic | 50.0% | |
CATCGTGTCAGCAGGAGATT+GGG | + | chr4.1:29851132-29851151 | MS.gene52084:CDS | 50.0% | |
GTCGTTGAGCTACTCCTTTG+TGG | + | chr4.1:29851163-29851182 | MS.gene52084:CDS | 50.0% | |
GTTCGTGAGATGCCTGTTGT+TGG | + | chr4.1:29851245-29851264 | MS.gene52084:CDS | 50.0% | |
TCATCGTGTCAGCAGGAGAT+TGG | + | chr4.1:29851131-29851150 | MS.gene52084:CDS | 50.0% | |
TGGCATAACCCCTTGCCATA+CGG | - | chr4.1:29851286-29851305 | None:intergenic | 50.0% | |
! | ATGCCTGTTGTTGGAGGTAC+TGG | + | chr4.1:29851254-29851273 | MS.gene52084:CDS | 50.0% |
! | CTGGACTTTTCCGTATGGCA+AGG | + | chr4.1:29851273-29851292 | MS.gene52084:CDS | 50.0% |
! | GGACTTTTCCGTATGGCAAG+GGG | + | chr4.1:29851275-29851294 | MS.gene52084:CDS | 50.0% |
AAACCCAAGCGCGATCAAGG+TGG | + | chr4.1:29850980-29850999 | MS.gene52084:CDS | 55.0% | |
CAACAGGCATCTCACGAACC+GGG | - | chr4.1:29851244-29851263 | None:intergenic | 55.0% | |
CACGAACCGGGTTCATAGCA+GGG | - | chr4.1:29851232-29851251 | None:intergenic | 55.0% | |
CGTGAGATGCCTGTTGTTGG+AGG | + | chr4.1:29851248-29851267 | MS.gene52084:CDS | 55.0% | |
TCACGAACCGGGTTCATAGC+AGG | - | chr4.1:29851233-29851252 | None:intergenic | 55.0% | |
TTACGCGTCATCGTGTCAGC+AGG | + | chr4.1:29851124-29851143 | MS.gene52084:CDS | 55.0% | |
CAGCCACCTTGATCGCGCTT+GGG | - | chr4.1:29850986-29851005 | None:intergenic | 60.0% | |
TCAGCCACCTTGATCGCGCT+TGG | - | chr4.1:29850987-29851006 | None:intergenic | 60.0% | |
! | CGGCCCACGAGCTTGGATTT+TGG | - | chr4.1:29851092-29851111 | None:intergenic | 60.0% |
AAGCTCGTGGGCCGAGCACA+AGG | + | chr4.1:29851098-29851117 | MS.gene52084:CDS | 65.0% | |
TTGTGCTCGGCCCACGAGCT+TGG | - | chr4.1:29851099-29851118 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.1 | gene | 29850804 | 29851382 | 29850804 | ID=MS.gene52084 |
chr4.1 | mRNA | 29850804 | 29851382 | 29850804 | ID=MS.gene52084.t1;Parent=MS.gene52084 |
chr4.1 | exon | 29850804 | 29851382 | 29850804 | ID=MS.gene52084.t1.exon1;Parent=MS.gene52084.t1 |
chr4.1 | CDS | 29850804 | 29851382 | 29850804 | ID=cds.MS.gene52084.t1;Parent=MS.gene52084.t1 |
Gene Sequence |
Protein sequence |