Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene034789.t1 | XP_013467867.1 | 94.4 | 248 | 13 | 1 | 1 | 247 | 1 | 248 | 5.70E-102 | 380.6 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene034789.t1 | Q9SJ52 | 38.1 | 244 | 131 | 4 | 1 | 241 | 1 | 227 | 3.1e-40 | 166.8 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene034789.t1 | A0A072VIS6 | 94.4 | 248 | 13 | 1 | 1 | 247 | 1 | 248 | 4.1e-102 | 380.6 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene034789 | MS.gene41069 | PPI |
MS.gene034789 | MS.gene025640 | PPI |
MS.gene034789 | MS.gene055657 | PPI |
MS.gene034789 | MS.gene051327 | PPI |
MS.gene034789 | MS.gene035313 | PPI |
MS.gene050363 | MS.gene034789 | PPI |
MS.gene034789 | MS.gene007146 | PPI |
MS.gene034789 | MS.gene70399 | PPI |
MS.gene41069 | MS.gene034789 | PPI |
MS.gene35049 | MS.gene034789 | PPI |
MS.gene034789 | MS.gene036507 | PPI |
MS.gene034789 | MS.gene041542 | PPI |
MS.gene034789 | MS.gene58402 | PPI |
MS.gene034789 | MS.gene028407 | PPI |
MS.gene028407 | MS.gene034789 | PPI |
MS.gene034789 | MS.gene055658 | PPI |
MS.gene034789 | MS.gene036506 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene034789.t1 | MTR_1g057270 | 94.355 | 248 | 13 | 1 | 1 | 247 | 1 | 248 | 3.91e-146 | 408 |
MS.gene034789.t1 | MTR_4g119428 | 62.602 | 246 | 88 | 2 | 1 | 245 | 2 | 244 | 5.68e-109 | 314 |
MS.gene034789.t1 | MTR_7g105870 | 52.521 | 238 | 97 | 3 | 4 | 240 | 5 | 227 | 1.10e-62 | 196 |
MS.gene034789.t1 | MTR_7g106000 | 39.516 | 248 | 121 | 6 | 1 | 241 | 1 | 226 | 1.28e-57 | 183 |
MS.gene034789.t1 | MTR_1g057400 | 39.216 | 204 | 114 | 4 | 43 | 241 | 11 | 209 | 1.53e-46 | 154 |
MS.gene034789.t1 | MTR_7g106010 | 36.214 | 243 | 130 | 6 | 5 | 241 | 4 | 227 | 1.26e-45 | 152 |
MS.gene034789.t1 | MTR_7g106030 | 38.865 | 229 | 117 | 5 | 5 | 228 | 7 | 217 | 1.70e-44 | 149 |
MS.gene034789.t1 | MTR_7g105970 | 39.167 | 240 | 120 | 5 | 5 | 240 | 8 | 225 | 4.98e-43 | 145 |
MS.gene034789.t1 | MTR_6g071410 | 40.361 | 166 | 92 | 5 | 61 | 220 | 15 | 179 | 1.08e-31 | 116 |
MS.gene034789.t1 | MTR_6g070890 | 40.361 | 166 | 92 | 5 | 61 | 220 | 15 | 179 | 1.08e-31 | 116 |
MS.gene034789.t1 | MTR_6g471090 | 40.588 | 170 | 93 | 6 | 57 | 220 | 10 | 177 | 1.55e-30 | 113 |
MS.gene034789.t1 | MTR_6g070900 | 35.152 | 165 | 102 | 3 | 61 | 220 | 15 | 179 | 4.88e-28 | 106 |
MS.gene034789.t1 | MTR_6g071400 | 35.152 | 165 | 102 | 3 | 61 | 220 | 15 | 179 | 4.88e-28 | 106 |
MS.gene034789.t1 | MTR_1g057290 | 37.952 | 166 | 98 | 3 | 81 | 241 | 52 | 217 | 3.29e-26 | 102 |
MS.gene034789.t1 | MTR_6g471080 | 42.105 | 171 | 89 | 7 | 57 | 220 | 7 | 174 | 6.00e-26 | 101 |
MS.gene034789.t1 | MTR_2g011350 | 30.070 | 143 | 99 | 1 | 73 | 215 | 40 | 181 | 5.58e-21 | 87.8 |
MS.gene034789.t1 | MTR_4g094322 | 55.714 | 70 | 29 | 1 | 180 | 247 | 2 | 71 | 1.23e-20 | 83.2 |
MS.gene034789.t1 | MTR_2g048270 | 38.356 | 146 | 84 | 5 | 95 | 237 | 2 | 144 | 7.28e-19 | 81.3 |
MS.gene034789.t1 | MTR_3g063310 | 31.250 | 176 | 104 | 5 | 75 | 245 | 87 | 250 | 3.47e-17 | 78.6 |
MS.gene034789.t1 | MTR_1g057230 | 50.769 | 65 | 32 | 0 | 181 | 245 | 30 | 94 | 2.33e-16 | 72.4 |
MS.gene034789.t1 | MTR_3g078800 | 24.845 | 161 | 118 | 3 | 60 | 218 | 73 | 232 | 3.17e-13 | 67.8 |
MS.gene034789.t1 | MTR_2g086790 | 28.777 | 139 | 79 | 4 | 56 | 175 | 19 | 156 | 4.46e-13 | 66.6 |
MS.gene034789.t1 | MTR_7g118270 | 27.273 | 165 | 113 | 4 | 62 | 221 | 48 | 210 | 5.96e-13 | 66.6 |
MS.gene034789.t1 | MTR_5g076170 | 28.205 | 156 | 109 | 3 | 72 | 226 | 96 | 249 | 6.18e-13 | 67.0 |
MS.gene034789.t1 | MTR_5g087760 | 24.229 | 227 | 142 | 7 | 15 | 231 | 41 | 247 | 1.59e-12 | 65.9 |
MS.gene034789.t1 | MTR_2g100060 | 22.222 | 180 | 136 | 2 | 70 | 246 | 78 | 256 | 2.36e-12 | 65.5 |
MS.gene034789.t1 | MTR_1g105570 | 22.467 | 227 | 151 | 6 | 1 | 218 | 1 | 211 | 2.99e-12 | 64.7 |
MS.gene034789.t1 | MTR_7g106050 | 27.119 | 177 | 121 | 4 | 55 | 229 | 23 | 193 | 4.47e-12 | 63.9 |
MS.gene034789.t1 | MTR_3g078820 | 26.207 | 145 | 104 | 3 | 75 | 218 | 44 | 186 | 1.16e-11 | 62.8 |
MS.gene034789.t1 | MTR_1g057300 | 40.000 | 100 | 53 | 3 | 43 | 142 | 12 | 104 | 1.65e-11 | 60.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene034789.t1 | AT3G11650 | 46.218 | 238 | 118 | 6 | 6 | 240 | 8 | 238 | 1.58e-70 | 216 |
MS.gene034789.t1 | AT2G35460 | 39.004 | 241 | 139 | 4 | 3 | 240 | 2 | 237 | 4.44e-60 | 189 |
MS.gene034789.t1 | AT2G35980 | 43.033 | 244 | 119 | 7 | 1 | 241 | 1 | 227 | 5.06e-60 | 189 |
MS.gene034789.t1 | AT5G06320 | 43.460 | 237 | 124 | 4 | 6 | 241 | 4 | 231 | 1.16e-55 | 178 |
MS.gene034789.t1 | AT1G32270 | 36.184 | 152 | 97 | 0 | 78 | 229 | 1 | 152 | 6.81e-26 | 103 |
MS.gene034789.t1 | AT1G32270 | 36.184 | 152 | 97 | 0 | 78 | 229 | 1 | 152 | 2.12e-25 | 103 |
MS.gene034789.t1 | AT3G52470 | 28.324 | 173 | 122 | 2 | 57 | 228 | 19 | 190 | 8.84e-18 | 79.3 |
MS.gene034789.t1 | AT5G22870 | 27.778 | 180 | 121 | 4 | 55 | 226 | 24 | 202 | 3.47e-17 | 77.8 |
MS.gene034789.t1 | AT4G09590 | 28.750 | 160 | 112 | 2 | 57 | 215 | 22 | 180 | 1.24e-16 | 76.3 |
MS.gene034789.t1 | AT4G05220 | 26.347 | 167 | 120 | 3 | 53 | 218 | 42 | 206 | 1.74e-16 | 76.3 |
MS.gene034789.t1 | AT4G01410 | 30.488 | 164 | 106 | 3 | 57 | 216 | 44 | 203 | 3.61e-16 | 75.5 |
MS.gene034789.t1 | AT2G35970 | 28.750 | 160 | 112 | 2 | 57 | 215 | 22 | 180 | 8.53e-15 | 71.2 |
MS.gene034789.t1 | AT1G61760 | 24.848 | 165 | 119 | 4 | 56 | 218 | 43 | 204 | 3.88e-14 | 69.7 |
MS.gene034789.t1 | AT5G53730 | 27.333 | 150 | 105 | 3 | 68 | 214 | 38 | 186 | 1.72e-13 | 67.8 |
MS.gene034789.t1 | AT3G44220 | 25.000 | 168 | 124 | 2 | 57 | 223 | 20 | 186 | 4.75e-13 | 66.6 |
MS.gene034789.t1 | AT2G27080 | 24.444 | 180 | 124 | 4 | 43 | 218 | 68 | 239 | 7.48e-13 | 66.6 |
MS.gene034789.t1 | AT2G27080 | 24.444 | 180 | 124 | 4 | 43 | 218 | 68 | 239 | 7.48e-13 | 66.6 |
MS.gene034789.t1 | AT3G11660 | 28.485 | 165 | 111 | 4 | 56 | 214 | 14 | 177 | 1.09e-12 | 65.5 |
MS.gene034789.t1 | AT5G36970 | 24.675 | 154 | 107 | 4 | 69 | 218 | 78 | 226 | 4.46e-12 | 64.3 |
MS.gene034789.t1 | AT1G65690 | 24.684 | 158 | 116 | 3 | 58 | 214 | 71 | 226 | 7.82e-12 | 63.9 |
MS.gene034789.t1 | AT2G35960 | 30.973 | 113 | 70 | 2 | 73 | 177 | 37 | 149 | 7.84e-12 | 63.2 |
Find 62 sgRNAs with CRISPR-Local
Find 66 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GAGAAAATTGATGGGGTTTA+TGG | 0.105048 | 1.1:+44858472 | MS.gene034789:CDS |
ATCACATAATGGTTCTTCTT+TGG | 0.207292 | 1.1:+44858597 | MS.gene034789:CDS |
GGGATTACAAATGGAGATTA+TGG | 0.235819 | 1.1:+44858650 | MS.gene034789:CDS |
TGATCCTCGGGTTCCTCTTC+TGG | 0.237356 | 1.1:+44858140 | MS.gene034789:CDS |
TCACATAATGGTTCTTCTTT+GGG | 0.268146 | 1.1:+44858598 | MS.gene034789:CDS |
TAAATACCAACTCTTCGATT+AGG | 0.295908 | 1.1:-44858283 | None:intergenic |
TTGAAATGAGGTTTAAATAT+TGG | 0.313606 | 1.1:+44858515 | MS.gene034789:CDS |
AAATACCAACTCTTCGATTA+GGG | 0.324696 | 1.1:-44858282 | None:intergenic |
ACTTGTTTATCTTTGAAAAC+AGG | 0.325553 | 1.1:-44858409 | None:intergenic |
AGCGCCGTTGAGTTGATTTC+CGG | 0.331355 | 1.1:-44857939 | None:intergenic |
GGCTTCGGTTGCGGTGGTGG+AGG | 0.353148 | 1.1:-44857980 | None:intergenic |
CGAGGCTTCGGTTGCGGTGG+TGG | 0.355024 | 1.1:-44857983 | None:intergenic |
CATTGAAATTGAATTGCGTT+AGG | 0.363749 | 1.1:-44858210 | None:intergenic |
CAGTTTGCGAATCAAACCTT+AGG | 0.372572 | 1.1:+44858346 | MS.gene034789:CDS |
CAACTCAACGGCGCTTATTA+CGG | 0.374153 | 1.1:+44857947 | MS.gene034789:CDS |
TTTGATAAGGAGAAAATTGA+TGG | 0.386908 | 1.1:+44858463 | MS.gene034789:CDS |
TGTCTCTGCGGCTGCGTTCG+AGG | 0.389789 | 1.1:+44858043 | MS.gene034789:CDS |
GTCATCATCCTCGTGATCCT+CGG | 0.401598 | 1.1:+44858127 | MS.gene034789:CDS |
TGCGGTGGTGGAGGGATCGA+TGG | 0.406509 | 1.1:-44857971 | None:intergenic |
TTGAAGCTACTGAATGTGAT+TGG | 0.408421 | 1.1:+44858629 | MS.gene034789:CDS |
GTGCCTTTGAAATCACATAA+TGG | 0.416264 | 1.1:+44858586 | MS.gene034789:CDS |
TTGCGGTGTCGACGAGGCTT+CGG | 0.436719 | 1.1:-44857995 | None:intergenic |
TAAGGTTCGTTGTGATTTGA+AGG | 0.444006 | 1.1:+44858564 | MS.gene034789:CDS |
ATAAAACGCCATCGTTTCAA+TGG | 0.453733 | 1.1:-44858314 | None:intergenic |
ATTGAAATTGAATTGCGTTA+GGG | 0.468485 | 1.1:-44858209 | None:intergenic |
AATGGTTCTTCTTTGGGGCA+TGG | 0.469938 | 1.1:+44858604 | MS.gene034789:CDS |
CGTTAGGGTTGCATCGTTGA+CGG | 0.471907 | 1.1:-44858194 | None:intergenic |
ACGGTGAATTTGACGACGTT+AGG | 0.476132 | 1.1:-44858175 | None:intergenic |
GCTTCGGTTGCGGTGGTGGA+GGG | 0.481685 | 1.1:-44857979 | None:intergenic |
TTTGAATGAAGATCAGACTA+AGG | 0.481981 | 1.1:+44858438 | MS.gene034789:CDS |
TTCAAATCACAACGAACCTT+AGG | 0.482759 | 1.1:-44858562 | None:intergenic |
TGAAGCTACTGAATGTGATT+GGG | 0.483584 | 1.1:+44858630 | MS.gene034789:CDS |
CACCGCAACGACGACGGTTG+CGG | 0.485935 | 1.1:+44858010 | MS.gene034789:CDS |
AATGTGATTGGGATTACAAA+TGG | 0.489479 | 1.1:+44858641 | MS.gene034789:CDS |
CACATAATGGTTCTTCTTTG+GGG | 0.491410 | 1.1:+44858599 | MS.gene034789:CDS |
TGTCGACGAGGCTTCGGTTG+CGG | 0.501015 | 1.1:-44857989 | None:intergenic |
TCAGACTAAGGAGTTTGATA+AGG | 0.501704 | 1.1:+44858450 | MS.gene034789:CDS |
TCATCATCCTCGTGATCCTC+GGG | 0.502379 | 1.1:+44858128 | MS.gene034789:CDS |
GCGGTGGTGGAGGGATCGAT+GGG | 0.511767 | 1.1:-44857970 | None:intergenic |
CTTGTTTATCTTTGAAAACA+GGG | 0.515714 | 1.1:-44858408 | None:intergenic |
TTAAGATGGTGATTGAAATG+AGG | 0.522786 | 1.1:+44858503 | MS.gene034789:CDS |
GATTGGACATGCGAAACCTA+AGG | 0.537152 | 1.1:+44858546 | MS.gene034789:CDS |
TTGATAAGGAGAAAATTGAT+GGG | 0.540563 | 1.1:+44858464 | MS.gene034789:CDS |
AGTTTGCGAATCAAACCTTA+GGG | 0.549610 | 1.1:+44858347 | MS.gene034789:CDS |
CGTAACCCTAATCGAAGAGT+TGG | 0.550944 | 1.1:+44858277 | MS.gene034789:CDS |
GGCTGCGTTCGAGGCTGTTG+CGG | 0.552748 | 1.1:+44858052 | MS.gene034789:CDS |
GAACCATTATGTGATTTCAA+AGG | 0.571830 | 1.1:-44858589 | None:intergenic |
TGCCGCAACCGTCGTCGTTG+CGG | 0.575842 | 1.1:-44858012 | None:intergenic |
CGACGAGGCTTCGGTTGCGG+TGG | 0.601168 | 1.1:-44857986 | None:intergenic |
CTATGACACCATTGAAACGA+TGG | 0.601443 | 1.1:+44858306 | MS.gene034789:CDS |
GAGATCGTAGTGAAGTGTGT+TGG | 0.609814 | 1.1:-44858236 | None:intergenic |
ATGCTGAAAGAATCTCCCTA+AGG | 0.610928 | 1.1:-44858362 | None:intergenic |
CGTCGACACCGCAACGACGA+CGG | 0.610999 | 1.1:+44858004 | MS.gene034789:CDS |
TGATAAGGAGAAAATTGATG+GGG | 0.622850 | 1.1:+44858465 | MS.gene034789:CDS |
GTCGAACAATGAGCCAGAAG+AGG | 0.628717 | 1.1:-44858153 | None:intergenic |
CGATCTCGCTCTTAACGTCA+CGG | 0.640093 | 1.1:+44858252 | MS.gene034789:CDS |
TGAGCCAGAAGAGGAACCCG+AGG | 0.651046 | 1.1:-44858144 | None:intergenic |
AGAGGAACCCGAGGATCACG+AGG | 0.656504 | 1.1:-44858135 | None:intergenic |
GGCATCTGCAGCTGTCTCTG+CGG | 0.663821 | 1.1:+44858031 | MS.gene034789:CDS |
TCGTCGTTGCGGTGTCGACG+AGG | 0.664976 | 1.1:-44858001 | None:intergenic |
CACGAGGATGATGACGATTG+TGG | 0.692820 | 1.1:-44858119 | None:intergenic |
ATGGCCGGAAATCAACTCAA+CGG | 0.693203 | 1.1:+44857935 | MS.gene034789:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | AAATATTGGTTTTTTAAGAT+TGG | + | chr1.1:44858529-44858548 | MS.gene034789:CDS | 15.0% |
!! | TTGAAATGAGGTTTAAATAT+TGG | + | chr1.1:44858515-44858534 | MS.gene034789:CDS | 20.0% |
!!! | TTATGGAATTGATTTTAAGA+TGG | + | chr1.1:44858489-44858508 | MS.gene034789:CDS | 20.0% |
! | ATTGAAATTGAATTGCGTTA+GGG | - | chr1.1:44858212-44858231 | None:intergenic | 25.0% |
! | TTGATAAGGAGAAAATTGAT+GGG | + | chr1.1:44858464-44858483 | MS.gene034789:CDS | 25.0% |
! | TTTGATAAGGAGAAAATTGA+TGG | + | chr1.1:44858463-44858482 | MS.gene034789:CDS | 25.0% |
!! | ACTTGTTTATCTTTGAAAAC+AGG | - | chr1.1:44858412-44858431 | None:intergenic | 25.0% |
!! | CTTGTTTATCTTTGAAAACA+GGG | - | chr1.1:44858411-44858430 | None:intergenic | 25.0% |
AAATACCAACTCTTCGATTA+GGG | - | chr1.1:44858285-44858304 | None:intergenic | 30.0% | |
AATGTGATTGGGATTACAAA+TGG | + | chr1.1:44858641-44858660 | MS.gene034789:CDS | 30.0% | |
ATCACATAATGGTTCTTCTT+TGG | + | chr1.1:44858597-44858616 | MS.gene034789:CDS | 30.0% | |
CATTGAAATTGAATTGCGTT+AGG | - | chr1.1:44858213-44858232 | None:intergenic | 30.0% | |
GAACCATTATGTGATTTCAA+AGG | - | chr1.1:44858592-44858611 | None:intergenic | 30.0% | |
TAAATACCAACTCTTCGATT+AGG | - | chr1.1:44858286-44858305 | None:intergenic | 30.0% | |
TCACATAATGGTTCTTCTTT+GGG | + | chr1.1:44858598-44858617 | MS.gene034789:CDS | 30.0% | |
TGATAAGGAGAAAATTGATG+GGG | + | chr1.1:44858465-44858484 | MS.gene034789:CDS | 30.0% | |
TTAAGATGGTGATTGAAATG+AGG | + | chr1.1:44858503-44858522 | MS.gene034789:CDS | 30.0% | |
TTTGAATGAAGATCAGACTA+AGG | + | chr1.1:44858438-44858457 | MS.gene034789:CDS | 30.0% | |
AGTTTGCGAATCAAACCTTA+GGG | + | chr1.1:44858347-44858366 | MS.gene034789:CDS | 35.0% | |
ATAAAACGCCATCGTTTCAA+TGG | - | chr1.1:44858317-44858336 | None:intergenic | 35.0% | |
CACATAATGGTTCTTCTTTG+GGG | + | chr1.1:44858599-44858618 | MS.gene034789:CDS | 35.0% | |
GAGAAAATTGATGGGGTTTA+TGG | + | chr1.1:44858472-44858491 | MS.gene034789:CDS | 35.0% | |
GGGATTACAAATGGAGATTA+TGG | + | chr1.1:44858650-44858669 | MS.gene034789:CDS | 35.0% | |
TAAGGTTCGTTGTGATTTGA+AGG | + | chr1.1:44858564-44858583 | MS.gene034789:CDS | 35.0% | |
TCAGACTAAGGAGTTTGATA+AGG | + | chr1.1:44858450-44858469 | MS.gene034789:CDS | 35.0% | |
TGAAGCTACTGAATGTGATT+GGG | + | chr1.1:44858630-44858649 | MS.gene034789:CDS | 35.0% | |
TTCAAATCACAACGAACCTT+AGG | - | chr1.1:44858565-44858584 | None:intergenic | 35.0% | |
TTGAAGCTACTGAATGTGAT+TGG | + | chr1.1:44858629-44858648 | MS.gene034789:CDS | 35.0% | |
! | TGAAACGATGGCGTTTTATA+AGG | + | chr1.1:44858318-44858337 | MS.gene034789:CDS | 35.0% |
! | TGCATTTTCAACTGCATCTT+AGG | + | chr1.1:44858076-44858095 | MS.gene034789:CDS | 35.0% |
!! | GTGCCTTTGAAATCACATAA+TGG | + | chr1.1:44858586-44858605 | MS.gene034789:CDS | 35.0% |
ATGCTGAAAGAATCTCCCTA+AGG | - | chr1.1:44858365-44858384 | None:intergenic | 40.0% | |
CAGTTTGCGAATCAAACCTT+AGG | + | chr1.1:44858346-44858365 | MS.gene034789:CDS | 40.0% | |
CTATGACACCATTGAAACGA+TGG | + | chr1.1:44858306-44858325 | MS.gene034789:CDS | 40.0% | |
ACGGTGAATTTGACGACGTT+AGG | - | chr1.1:44858178-44858197 | None:intergenic | 45.0% | |
ATGGCCGGAAATCAACTCAA+CGG | + | chr1.1:44857935-44857954 | MS.gene034789:CDS | 45.0% | |
CAACTCAACGGCGCTTATTA+CGG | + | chr1.1:44857947-44857966 | MS.gene034789:CDS | 45.0% | |
CGTAACCCTAATCGAAGAGT+TGG | + | chr1.1:44858277-44858296 | MS.gene034789:CDS | 45.0% | |
GAGATCGTAGTGAAGTGTGT+TGG | - | chr1.1:44858239-44858258 | None:intergenic | 45.0% | |
GATTGGACATGCGAAACCTA+AGG | + | chr1.1:44858546-44858565 | MS.gene034789:CDS | 45.0% | |
!! | AATGGTTCTTCTTTGGGGCA+TGG | + | chr1.1:44858604-44858623 | MS.gene034789:CDS | 45.0% |
CGATCTCGCTCTTAACGTCA+CGG | + | chr1.1:44858252-44858271 | MS.gene034789:CDS | 50.0% | |
CGTTAGGGTTGCATCGTTGA+CGG | - | chr1.1:44858197-44858216 | None:intergenic | 50.0% | |
GTCATCATCCTCGTGATCCT+CGG | + | chr1.1:44858127-44858146 | MS.gene034789:CDS | 50.0% | |
GTCGAACAATGAGCCAGAAG+AGG | - | chr1.1:44858156-44858175 | None:intergenic | 50.0% | |
TCATCATCCTCGTGATCCTC+GGG | + | chr1.1:44858128-44858147 | MS.gene034789:CDS | 50.0% | |
! | CACGAGGATGATGACGATTG+TGG | - | chr1.1:44858122-44858141 | None:intergenic | 50.0% |
!! | AGCGCCGTTGAGTTGATTTC+CGG | - | chr1.1:44857942-44857961 | None:intergenic | 50.0% |
TGATCCTCGGGTTCCTCTTC+TGG | + | chr1.1:44858140-44858159 | MS.gene034789:CDS | 55.0% | |
AGAGGAACCCGAGGATCACG+AGG | - | chr1.1:44858138-44858157 | None:intergenic | 60.0% | |
GGCATCTGCAGCTGTCTCTG+CGG | + | chr1.1:44858031-44858050 | MS.gene034789:CDS | 60.0% | |
TGAGCCAGAAGAGGAACCCG+AGG | - | chr1.1:44858147-44858166 | None:intergenic | 60.0% | |
TGTCGACGAGGCTTCGGTTG+CGG | - | chr1.1:44857992-44858011 | None:intergenic | 60.0% | |
!! | TTGCGGTGTCGACGAGGCTT+CGG | - | chr1.1:44857998-44858017 | None:intergenic | 60.0% |
CACCGCAACGACGACGGTTG+CGG | + | chr1.1:44858010-44858029 | MS.gene034789:CDS | 65.0% | |
CGTCGACACCGCAACGACGA+CGG | + | chr1.1:44858004-44858023 | MS.gene034789:CDS | 65.0% | |
GGCTGCGTTCGAGGCTGTTG+CGG | + | chr1.1:44858052-44858071 | MS.gene034789:CDS | 65.0% | |
TGCCGCAACCGTCGTCGTTG+CGG | - | chr1.1:44858015-44858034 | None:intergenic | 65.0% | |
TGTCTCTGCGGCTGCGTTCG+AGG | + | chr1.1:44858043-44858062 | MS.gene034789:CDS | 65.0% | |
!! | GCGGTGGTGGAGGGATCGAT+GGG | - | chr1.1:44857973-44857992 | None:intergenic | 65.0% |
!! | GCTTCGGTTGCGGTGGTGGA+GGG | - | chr1.1:44857982-44858001 | None:intergenic | 65.0% |
!! | TCGTCGTTGCGGTGTCGACG+AGG | - | chr1.1:44858004-44858023 | None:intergenic | 65.0% |
!! | TGCGGTGGTGGAGGGATCGA+TGG | - | chr1.1:44857974-44857993 | None:intergenic | 65.0% |
CGACGAGGCTTCGGTTGCGG+TGG | - | chr1.1:44857989-44858008 | None:intergenic | 70.0% | |
CGAGGCTTCGGTTGCGGTGG+TGG | - | chr1.1:44857986-44858005 | None:intergenic | 70.0% | |
! | GGCTTCGGTTGCGGTGGTGG+AGG | - | chr1.1:44857983-44858002 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.1 | gene | 44857935 | 44858678 | 44857935 | ID=MS.gene034789 |
chr1.1 | mRNA | 44857935 | 44858678 | 44857935 | ID=MS.gene034789.t1;Parent=MS.gene034789 |
chr1.1 | exon | 44857935 | 44858678 | 44857935 | ID=MS.gene034789.t1.exon1;Parent=MS.gene034789.t1 |
chr1.1 | CDS | 44857935 | 44858678 | 44857935 | ID=cds.MS.gene034789.t1;Parent=MS.gene034789.t1 |
Gene Sequence |
Protein sequence |