Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene025640.t1 | XP_013450186.1 | 92.5 | 228 | 17 | 0 | 1 | 228 | 1 | 228 | 2.80E-103 | 384.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene025640.t1 | Q9SJ52 | 45.0 | 229 | 121 | 4 | 1 | 227 | 1 | 226 | 3.4e-49 | 196.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene025640.t1 | A0A072U3B3 | 92.5 | 228 | 17 | 0 | 1 | 228 | 1 | 228 | 2.0e-103 | 384.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene034789 | MS.gene025640 | PPI |
| MS.gene028407 | MS.gene025640 | PPI |
| MS.gene025640 | MS.gene58402 | PPI |
| MS.gene041542 | MS.gene025640 | PPI |
| MS.gene024387 | MS.gene025640 | PPI |
| MS.gene025640 | MS.gene22751 | PPI |
| MS.gene060478 | MS.gene025640 | PPI |
| MS.gene051327 | MS.gene025640 | PPI |
| MS.gene050698 | MS.gene025640 | PPI |
| MS.gene70399 | MS.gene025640 | PPI |
| MS.gene08516 | MS.gene025640 | PPI |
| MS.gene025640 | MS.gene055657 | PPI |
| MS.gene025640 | MS.gene055658 | PPI |
| MS.gene025640 | MS.gene036506 | PPI |
| MS.gene025640 | MS.gene035313 | PPI |
| MS.gene025855 | MS.gene025640 | PPI |
| MS.gene41069 | MS.gene025640 | PPI |
| MS.gene82004 | MS.gene025640 | PPI |
| MS.gene036507 | MS.gene025640 | PPI |
| MS.gene35049 | MS.gene025640 | PPI |
| MS.gene025640 | MS.gene067336 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene025640.t1 | MTR_7g105870 | 96.053 | 228 | 9 | 0 | 1 | 228 | 1 | 228 | 1.31e-166 | 458 |
| MS.gene025640.t1 | MTR_4g119428 | 48.750 | 240 | 109 | 5 | 1 | 227 | 1 | 239 | 7.04e-72 | 219 |
| MS.gene025640.t1 | MTR_1g057270 | 52.282 | 241 | 92 | 4 | 6 | 227 | 5 | 241 | 2.12e-66 | 205 |
| MS.gene025640.t1 | MTR_7g106000 | 45.652 | 230 | 113 | 6 | 2 | 227 | 4 | 225 | 3.77e-66 | 204 |
| MS.gene025640.t1 | MTR_7g106010 | 45.575 | 226 | 112 | 5 | 6 | 225 | 4 | 224 | 1.38e-62 | 195 |
| MS.gene025640.t1 | MTR_7g106030 | 43.721 | 215 | 108 | 5 | 6 | 213 | 7 | 215 | 1.23e-53 | 172 |
| MS.gene025640.t1 | MTR_7g105970 | 40.611 | 229 | 124 | 4 | 3 | 227 | 5 | 225 | 1.42e-51 | 167 |
| MS.gene025640.t1 | MTR_1g057400 | 41.538 | 195 | 109 | 2 | 35 | 225 | 13 | 206 | 3.46e-49 | 160 |
| MS.gene025640.t1 | MTR_6g071410 | 41.341 | 179 | 99 | 5 | 34 | 207 | 2 | 179 | 7.81e-34 | 121 |
| MS.gene025640.t1 | MTR_6g070890 | 41.341 | 179 | 99 | 5 | 34 | 207 | 2 | 179 | 7.81e-34 | 121 |
| MS.gene025640.t1 | MTR_6g471090 | 40.449 | 178 | 90 | 7 | 35 | 207 | 11 | 177 | 5.37e-33 | 119 |
| MS.gene025640.t1 | MTR_6g070900 | 39.665 | 179 | 102 | 5 | 34 | 207 | 2 | 179 | 6.12e-31 | 113 |
| MS.gene025640.t1 | MTR_6g071400 | 39.665 | 179 | 102 | 5 | 34 | 207 | 2 | 179 | 6.12e-31 | 113 |
| MS.gene025640.t1 | MTR_6g471080 | 40.782 | 179 | 89 | 6 | 34 | 207 | 8 | 174 | 1.25e-26 | 102 |
| MS.gene025640.t1 | MTR_1g057290 | 35.849 | 212 | 126 | 4 | 17 | 224 | 8 | 213 | 3.39e-25 | 98.6 |
| MS.gene025640.t1 | MTR_2g011350 | 33.140 | 172 | 108 | 3 | 54 | 225 | 35 | 199 | 9.72e-25 | 97.1 |
| MS.gene025640.t1 | MTR_5g087760 | 30.303 | 198 | 126 | 5 | 16 | 205 | 41 | 234 | 3.59e-20 | 86.3 |
| MS.gene025640.t1 | MTR_2g048270 | 40.541 | 148 | 79 | 7 | 81 | 224 | 2 | 144 | 1.29e-17 | 77.8 |
| MS.gene025640.t1 | MTR_7g106050 | 30.921 | 152 | 102 | 3 | 40 | 190 | 17 | 166 | 1.49e-17 | 78.2 |
| MS.gene025640.t1 | MTR_2g086790 | 27.647 | 170 | 111 | 3 | 43 | 201 | 19 | 187 | 8.23e-16 | 73.9 |
| MS.gene025640.t1 | MTR_1g057420 | 27.222 | 180 | 127 | 4 | 39 | 216 | 16 | 193 | 2.49e-15 | 72.4 |
| MS.gene025640.t1 | MTR_4g094322 | 50.000 | 62 | 29 | 1 | 167 | 226 | 2 | 63 | 4.20e-15 | 68.2 |
| MS.gene025640.t1 | MTR_1g105570 | 26.190 | 168 | 120 | 3 | 42 | 208 | 50 | 214 | 4.51e-15 | 72.0 |
| MS.gene025640.t1 | MTR_3g063310 | 32.667 | 150 | 98 | 3 | 57 | 205 | 83 | 230 | 1.08e-14 | 71.2 |
| MS.gene025640.t1 | MTR_2g087000 | 25.414 | 181 | 129 | 3 | 40 | 217 | 47 | 224 | 1.17e-14 | 70.9 |
| MS.gene025640.t1 | MTR_2g100060 | 29.944 | 177 | 117 | 5 | 55 | 227 | 77 | 250 | 9.60e-14 | 68.9 |
| MS.gene025640.t1 | MTR_7g118270 | 26.396 | 197 | 141 | 4 | 16 | 210 | 18 | 212 | 1.59e-13 | 67.8 |
| MS.gene025640.t1 | MTR_5g076170 | 31.548 | 168 | 109 | 4 | 60 | 226 | 97 | 259 | 2.81e-13 | 67.4 |
| MS.gene025640.t1 | MTR_3g092790 | 27.536 | 138 | 96 | 3 | 66 | 202 | 49 | 183 | 6.05e-13 | 65.9 |
| MS.gene025640.t1 | MTR_2g012550 | 27.568 | 185 | 122 | 5 | 20 | 201 | 64 | 239 | 6.58e-13 | 66.6 |
| MS.gene025640.t1 | MTR_1g057230 | 47.541 | 61 | 32 | 0 | 168 | 228 | 30 | 90 | 1.77e-12 | 62.0 |
| MS.gene025640.t1 | MTR_3g078800 | 27.778 | 162 | 113 | 4 | 46 | 205 | 73 | 232 | 5.67e-12 | 63.9 |
| MS.gene025640.t1 | MTR_1g057300 | 42.553 | 94 | 51 | 2 | 35 | 128 | 13 | 103 | 5.05e-11 | 58.9 |
| MS.gene025640.t1 | MTR_4g051880 | 27.219 | 169 | 114 | 3 | 63 | 223 | 41 | 208 | 5.80e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene025640.t1 | AT2G35980 | 50.655 | 229 | 108 | 4 | 1 | 227 | 1 | 226 | 1.21e-77 | 233 |
| MS.gene025640.t1 | AT3G11650 | 45.082 | 244 | 111 | 7 | 1 | 227 | 1 | 238 | 1.08e-64 | 201 |
| MS.gene025640.t1 | AT5G06320 | 47.391 | 230 | 109 | 4 | 7 | 227 | 4 | 230 | 4.47e-64 | 199 |
| MS.gene025640.t1 | AT2G35460 | 41.026 | 234 | 124 | 2 | 7 | 227 | 5 | 237 | 5.35e-62 | 194 |
| MS.gene025640.t1 | AT1G32270 | 38.961 | 154 | 93 | 1 | 64 | 217 | 1 | 153 | 1.77e-30 | 115 |
| MS.gene025640.t1 | AT1G32270 | 38.961 | 154 | 93 | 1 | 64 | 217 | 1 | 153 | 9.64e-30 | 114 |
| MS.gene025640.t1 | AT3G11660 | 31.677 | 161 | 107 | 3 | 43 | 201 | 18 | 177 | 2.93e-21 | 88.2 |
| MS.gene025640.t1 | AT3G52470 | 31.977 | 172 | 113 | 4 | 47 | 216 | 23 | 192 | 6.35e-21 | 87.4 |
| MS.gene025640.t1 | AT5G53730 | 27.907 | 172 | 121 | 3 | 56 | 225 | 40 | 210 | 1.43e-20 | 86.7 |
| MS.gene025640.t1 | AT5G22870 | 27.419 | 186 | 126 | 4 | 43 | 227 | 29 | 206 | 2.02e-18 | 80.5 |
| MS.gene025640.t1 | AT4G05220 | 26.786 | 168 | 119 | 3 | 39 | 205 | 42 | 206 | 4.91e-18 | 80.1 |
| MS.gene025640.t1 | AT1G61760 | 24.405 | 168 | 123 | 3 | 39 | 205 | 40 | 204 | 6.46e-18 | 79.7 |
| MS.gene025640.t1 | AT5G06330 | 26.768 | 198 | 138 | 4 | 30 | 223 | 7 | 201 | 9.94e-17 | 76.3 |
| MS.gene025640.t1 | AT3G44220 | 27.660 | 188 | 131 | 4 | 43 | 227 | 20 | 205 | 1.34e-16 | 75.9 |
| MS.gene025640.t1 | AT2G35960 | 29.801 | 151 | 103 | 3 | 58 | 207 | 36 | 184 | 1.85e-16 | 75.5 |
| MS.gene025640.t1 | AT4G09590 | 28.662 | 157 | 109 | 3 | 47 | 202 | 26 | 180 | 1.90e-16 | 75.5 |
| MS.gene025640.t1 | AT4G01410 | 28.022 | 182 | 118 | 5 | 36 | 214 | 45 | 216 | 1.26e-14 | 70.9 |
| MS.gene025640.t1 | AT2G35970 | 28.025 | 157 | 110 | 3 | 47 | 202 | 26 | 180 | 1.28e-14 | 70.5 |
| MS.gene025640.t1 | AT2G27080 | 24.651 | 215 | 152 | 5 | 16 | 227 | 49 | 256 | 2.95e-14 | 70.5 |
| MS.gene025640.t1 | AT2G27080 | 24.651 | 215 | 152 | 5 | 16 | 227 | 49 | 256 | 2.95e-14 | 70.5 |
| MS.gene025640.t1 | AT5G36970 | 28.729 | 181 | 121 | 5 | 28 | 205 | 51 | 226 | 3.36e-13 | 67.4 |
| MS.gene025640.t1 | AT5G22200 | 29.078 | 141 | 97 | 3 | 62 | 201 | 43 | 181 | 8.62e-13 | 65.5 |
| MS.gene025640.t1 | AT1G65690 | 25.157 | 159 | 116 | 3 | 44 | 201 | 70 | 226 | 1.61e-11 | 62.4 |
Find 62 sgRNAs with CRISPR-Local
Find 68 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACAACTTTCTCACCCTTAA+AGG | 0.153920 | 7.3:-8442370 | None:intergenic |
| CTTGTTGGTGGAGGGATTGC+TGG | 0.156594 | 7.3:-8441970 | None:intergenic |
| TGAGGATGAGTTTGAATATT+AGG | 0.216646 | 7.3:-8442053 | None:intergenic |
| TTACGTGTTCCTTTGAATTC+TGG | 0.223504 | 7.3:+8442537 | MS.gene025640:CDS |
| CGTAACTCACATGTAATCTT+TGG | 0.303634 | 7.3:-8442519 | None:intergenic |
| TGTTGTTTGTGTAGTTGAAT+TGG | 0.305690 | 7.3:-8442170 | None:intergenic |
| CTGAATAAAGAGAAGGATTC+AGG | 0.317437 | 7.3:+8442420 | MS.gene025640:CDS |
| GCATCGCAGTCTTCATCTTC+TGG | 0.333063 | 7.3:+8442094 | MS.gene025640:CDS |
| GTTGTTTGTGTAGTTGAATT+GGG | 0.359480 | 7.3:-8442169 | None:intergenic |
| TTGAGGCTACCAAGTGTGAT+TGG | 0.384464 | 7.3:+8442586 | MS.gene025640:CDS |
| TCTTAAGGTGAGGTTTAAGT+TGG | 0.385208 | 7.3:+8442470 | MS.gene025640:CDS |
| TCTTAGTGGTGATCAAAGTT+TGG | 0.396926 | 7.3:+8442395 | MS.gene025640:CDS |
| AGTGTGATTGGGATCGTTGA+TGG | 0.422079 | 7.3:+8442598 | MS.gene025640:CDS |
| GAGAAAGTTGTTGTTCTTAG+TGG | 0.437152 | 7.3:+8442381 | MS.gene025640:CDS |
| TCTGGCGGTGGTTCGCCGGC+GGG | 0.438220 | 7.3:+8442555 | MS.gene025640:CDS |
| GAATTCTGGCGGTGGTTCGC+CGG | 0.449626 | 7.3:+8442551 | MS.gene025640:CDS |
| TGAGGCTACCAAGTGTGATT+GGG | 0.454744 | 7.3:+8442587 | MS.gene025640:CDS |
| TTGTAGGATCTTGTTGGTGG+AGG | 0.467810 | 7.3:-8441979 | None:intergenic |
| CTTAAGGTGAGGTTTAAGTT+GGG | 0.468942 | 7.3:+8442471 | MS.gene025640:CDS |
| AGGGATTGCTGGGCCGTAGT+AGG | 0.471071 | 7.3:-8441959 | None:intergenic |
| TAGTTGTTGTTTCTCATGCA+TGG | 0.471440 | 7.3:-8441929 | None:intergenic |
| TGTGTAGTTGAATTGGGTTA+AGG | 0.472029 | 7.3:-8442163 | None:intergenic |
| GTGGTTCGCCGGCGGGTGGT+AGG | 0.476192 | 7.3:+8442562 | MS.gene025640:CDS |
| TTAGAGCAAGATTGTAGTTG+AGG | 0.480609 | 7.3:-8442200 | None:intergenic |
| ACGTGGACTTTGACAGCGTT+GGG | 0.489477 | 7.3:-8442129 | None:intergenic |
| TTGTTGGTGGAGGGATTGCT+GGG | 0.495477 | 7.3:-8441969 | None:intergenic |
| CATGAGAAACAACAACTAAA+CGG | 0.495875 | 7.3:+8441934 | MS.gene025640:CDS |
| GCCACGAGATGGACGGTTGT+AGG | 0.500179 | 7.3:-8441995 | None:intergenic |
| TTCTGGCGGTGGTTCGCCGG+CGG | 0.501273 | 7.3:+8442554 | MS.gene025640:CDS |
| GGGCTTTATACCATGATGCT+AGG | 0.506064 | 7.3:+8442283 | MS.gene025640:CDS |
| TGTAGGATCTTGTTGGTGGA+GGG | 0.507492 | 7.3:-8441978 | None:intergenic |
| GGCTTTATACCATGATGCTA+GGG | 0.509491 | 7.3:+8442284 | MS.gene025640:CDS |
| CGCAACCCGAACAAAAGACT+TGG | 0.511397 | 7.3:+8442234 | MS.gene025640:CDS |
| GCCGGCGGGTGGTAGGTTTG+AGG | 0.514730 | 7.3:+8442569 | MS.gene025640:CDS |
| GGCGGTGGTTCGCCGGCGGG+TGG | 0.518402 | 7.3:+8442558 | MS.gene025640:CDS |
| AACCGTCCATCTCGTGGCGG+CGG | 0.520361 | 7.3:+8442000 | MS.gene025640:CDS |
| ACTTTCTCACCCTTAAAGGA+AGG | 0.526321 | 7.3:-8442366 | None:intergenic |
| TCGAAACCGCCGCCACGAGA+TGG | 0.538619 | 7.3:-8442006 | None:intergenic |
| TTTGGAGCTGAATAAAGAGA+AGG | 0.539334 | 7.3:+8442413 | MS.gene025640:CDS |
| GGACGGTTGTAGGATCTTGT+TGG | 0.543682 | 7.3:-8441985 | None:intergenic |
| TGATGTGAAGATGTATCTTA+AGG | 0.546573 | 7.3:+8442455 | MS.gene025640:CDS |
| CGGTTGTAGGATCTTGTTGG+TGG | 0.547420 | 7.3:-8441982 | None:intergenic |
| GGCGGTTTCGACTGCTGCTG+CGG | 0.550658 | 7.3:+8442018 | MS.gene025640:CDS |
| ACTACGACTACATCGAAGCT+AGG | 0.557193 | 7.3:+8442262 | MS.gene025640:CDS |
| CAACTAAACGGAGCCTACTA+CGG | 0.560789 | 7.3:+8441946 | MS.gene025640:CDS |
| CTTTCTCACCCTTAAAGGAA+GGG | 0.564054 | 7.3:-8442365 | None:intergenic |
| GTTCCTTTGAATTCTGGCGG+TGG | 0.570041 | 7.3:+8442543 | MS.gene025640:CDS |
| TAGAGTCAACCCTAGCATCA+TGG | 0.574128 | 7.3:-8442293 | None:intergenic |
| GACGTGGACTTTGACAGCGT+TGG | 0.575314 | 7.3:-8442130 | None:intergenic |
| CGTGTTCCTTTGAATTCTGG+CGG | 0.590116 | 7.3:+8442540 | MS.gene025640:CDS |
| GAACCACCGCCAGAATTCAA+AGG | 0.592368 | 7.3:-8442546 | None:intergenic |
| TCAACGATCCCAATCACACT+TGG | 0.602797 | 7.3:-8442595 | None:intergenic |
| CTCACCGTCATAATAATCAT+CGG | 0.609344 | 7.3:+8442072 | MS.gene025640:CDS |
| CTACGACTACATCGAAGCTA+GGG | 0.610192 | 7.3:+8442263 | MS.gene025640:CDS |
| GCCTCAAACCTACCACCCGC+CGG | 0.611600 | 7.3:-8442570 | None:intergenic |
| TTAAGGTTGCGTCTGTGACG+TGG | 0.612953 | 7.3:-8442146 | None:intergenic |
| TCCTACAACCGTCCATCTCG+TGG | 0.614914 | 7.3:+8441994 | MS.gene025640:CDS |
| TGAAGATGTATCTTAAGGTG+AGG | 0.627237 | 7.3:+8442460 | MS.gene025640:CDS |
| AACCGCCGCCACGAGATGGA+CGG | 0.633435 | 7.3:-8442002 | None:intergenic |
| TACAACCGTCCATCTCGTGG+CGG | 0.691515 | 7.3:+8441997 | MS.gene025640:CDS |
| GATGCCGATGATTATTATGA+CGG | 0.710892 | 7.3:-8442076 | None:intergenic |
| CGATGATTATTATGACGGTG+AGG | 0.725286 | 7.3:-8442071 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GTTTTATGTCCTTGATAAAA+AGG | - | chr7.3:8442330-8442349 | None:intergenic | 25.0% |
| !! | TTTCTTGATCCTTTTTATCA+AGG | + | chr7.3:8442318-8442337 | MS.gene025640:CDS | 25.0% |
| CATGAGAAACAACAACTAAA+CGG | + | chr7.3:8441934-8441953 | MS.gene025640:CDS | 30.0% | |
| GTTGTTTGTGTAGTTGAATT+GGG | - | chr7.3:8442172-8442191 | None:intergenic | 30.0% | |
| TGAGGATGAGTTTGAATATT+AGG | - | chr7.3:8442056-8442075 | None:intergenic | 30.0% | |
| TGATGTGAAGATGTATCTTA+AGG | + | chr7.3:8442455-8442474 | MS.gene025640:CDS | 30.0% | |
| ! | TGTTGTTTGTGTAGTTGAAT+TGG | - | chr7.3:8442173-8442192 | None:intergenic | 30.0% |
| ! | TTTTTGAACCCTTCCTTTAA+GGG | + | chr7.3:8442357-8442376 | MS.gene025640:CDS | 30.0% |
| !!! | TTTTTTGAACCCTTCCTTTA+AGG | + | chr7.3:8442356-8442375 | MS.gene025640:CDS | 30.0% |
| AACAACTTTCTCACCCTTAA+AGG | - | chr7.3:8442373-8442392 | None:intergenic | 35.0% | |
| CGTAACTCACATGTAATCTT+TGG | - | chr7.3:8442522-8442541 | None:intergenic | 35.0% | |
| CTCACCGTCATAATAATCAT+CGG | + | chr7.3:8442072-8442091 | MS.gene025640:CDS | 35.0% | |
| CTGAATAAAGAGAAGGATTC+AGG | + | chr7.3:8442420-8442439 | MS.gene025640:CDS | 35.0% | |
| GATGCCGATGATTATTATGA+CGG | - | chr7.3:8442079-8442098 | None:intergenic | 35.0% | |
| TCTTAAGGTGAGGTTTAAGT+TGG | + | chr7.3:8442470-8442489 | MS.gene025640:CDS | 35.0% | |
| TCTTAGTGGTGATCAAAGTT+TGG | + | chr7.3:8442395-8442414 | MS.gene025640:CDS | 35.0% | |
| TGAAGATGTATCTTAAGGTG+AGG | + | chr7.3:8442460-8442479 | MS.gene025640:CDS | 35.0% | |
| TGTGTAGTTGAATTGGGTTA+AGG | - | chr7.3:8442166-8442185 | None:intergenic | 35.0% | |
| TTACGTGTTCCTTTGAATTC+TGG | + | chr7.3:8442537-8442556 | MS.gene025640:CDS | 35.0% | |
| TTAGAGCAAGATTGTAGTTG+AGG | - | chr7.3:8442203-8442222 | None:intergenic | 35.0% | |
| ! | CTTAAGGTGAGGTTTAAGTT+GGG | + | chr7.3:8442471-8442490 | MS.gene025640:CDS | 35.0% |
| ! | GAGAAAGTTGTTGTTCTTAG+TGG | + | chr7.3:8442381-8442400 | MS.gene025640:CDS | 35.0% |
| ! | TAGATGCCAAGTCTTTTGTT+CGG | - | chr7.3:8442243-8442262 | None:intergenic | 35.0% |
| ! | TTTGGAGCTGAATAAAGAGA+AGG | + | chr7.3:8442413-8442432 | MS.gene025640:CDS | 35.0% |
| !!! | AGTTGGGAGTTTTTAAGACA+AGG | + | chr7.3:8442487-8442506 | MS.gene025640:CDS | 35.0% |
| ACTTTCTCACCCTTAAAGGA+AGG | - | chr7.3:8442369-8442388 | None:intergenic | 40.0% | |
| CGATGATTATTATGACGGTG+AGG | - | chr7.3:8442074-8442093 | None:intergenic | 40.0% | |
| CTTTCTCACCCTTAAAGGAA+GGG | - | chr7.3:8442368-8442387 | None:intergenic | 40.0% | |
| ! | AGATGCCAAGTCTTTTGTTC+GGG | - | chr7.3:8442242-8442261 | None:intergenic | 40.0% |
| ! | GGCTTTATACCATGATGCTA+GGG | + | chr7.3:8442284-8442303 | MS.gene025640:CDS | 40.0% |
| ACTACGACTACATCGAAGCT+AGG | + | chr7.3:8442262-8442281 | MS.gene025640:CDS | 45.0% | |
| CAACTAAACGGAGCCTACTA+CGG | + | chr7.3:8441946-8441965 | MS.gene025640:CDS | 45.0% | |
| CGTGTTCCTTTGAATTCTGG+CGG | + | chr7.3:8442540-8442559 | MS.gene025640:CDS | 45.0% | |
| CTACGACTACATCGAAGCTA+GGG | + | chr7.3:8442263-8442282 | MS.gene025640:CDS | 45.0% | |
| TAGAGTCAACCCTAGCATCA+TGG | - | chr7.3:8442296-8442315 | None:intergenic | 45.0% | |
| TCAACGATCCCAATCACACT+TGG | - | chr7.3:8442598-8442617 | None:intergenic | 45.0% | |
| TGAGGCTACCAAGTGTGATT+GGG | + | chr7.3:8442587-8442606 | MS.gene025640:CDS | 45.0% | |
| TTGAGGCTACCAAGTGTGAT+TGG | + | chr7.3:8442586-8442605 | MS.gene025640:CDS | 45.0% | |
| ! | GGGCTTTATACCATGATGCT+AGG | + | chr7.3:8442283-8442302 | MS.gene025640:CDS | 45.0% |
| ! | TGTAGGATCTTGTTGGTGGA+GGG | - | chr7.3:8441981-8442000 | None:intergenic | 45.0% |
| ! | TTGTAGGATCTTGTTGGTGG+AGG | - | chr7.3:8441982-8442001 | None:intergenic | 45.0% |
| !!! | CAAGTCTTTTGTTCGGGTTG+CGG | - | chr7.3:8442236-8442255 | None:intergenic | 45.0% |
| ACGTGGACTTTGACAGCGTT+GGG | - | chr7.3:8442132-8442151 | None:intergenic | 50.0% | |
| CGCAACCCGAACAAAAGACT+TGG | + | chr7.3:8442234-8442253 | MS.gene025640:CDS | 50.0% | |
| CGGTTGTAGGATCTTGTTGG+TGG | - | chr7.3:8441985-8442004 | None:intergenic | 50.0% | |
| GAACCACCGCCAGAATTCAA+AGG | - | chr7.3:8442549-8442568 | None:intergenic | 50.0% | |
| GCATCGCAGTCTTCATCTTC+TGG | + | chr7.3:8442094-8442113 | MS.gene025640:CDS | 50.0% | |
| GGACGGTTGTAGGATCTTGT+TGG | - | chr7.3:8441988-8442007 | None:intergenic | 50.0% | |
| GTTCCTTTGAATTCTGGCGG+TGG | + | chr7.3:8442543-8442562 | MS.gene025640:CDS | 50.0% | |
| TTAAGGTTGCGTCTGTGACG+TGG | - | chr7.3:8442149-8442168 | None:intergenic | 50.0% | |
| ! | TTGTTGGTGGAGGGATTGCT+GGG | - | chr7.3:8441972-8441991 | None:intergenic | 50.0% |
| GACGTGGACTTTGACAGCGT+TGG | - | chr7.3:8442133-8442152 | None:intergenic | 55.0% | |
| TACAACCGTCCATCTCGTGG+CGG | + | chr7.3:8441997-8442016 | MS.gene025640:CDS | 55.0% | |
| TCCTACAACCGTCCATCTCG+TGG | + | chr7.3:8441994-8442013 | MS.gene025640:CDS | 55.0% | |
| ! | CTTGTTGGTGGAGGGATTGC+TGG | - | chr7.3:8441973-8441992 | None:intergenic | 55.0% |
| AGGGATTGCTGGGCCGTAGT+AGG | - | chr7.3:8441962-8441981 | None:intergenic | 60.0% | |
| GAATTCTGGCGGTGGTTCGC+CGG | + | chr7.3:8442551-8442570 | MS.gene025640:CDS | 60.0% | |
| GCCACGAGATGGACGGTTGT+AGG | - | chr7.3:8441998-8442017 | None:intergenic | 60.0% | |
| AACCGCCGCCACGAGATGGA+CGG | - | chr7.3:8442005-8442024 | None:intergenic | 65.0% | |
| AACCGTCCATCTCGTGGCGG+CGG | + | chr7.3:8442000-8442019 | MS.gene025640:CDS | 65.0% | |
| GCCTCAAACCTACCACCCGC+CGG | - | chr7.3:8442573-8442592 | None:intergenic | 65.0% | |
| GGCGGTTTCGACTGCTGCTG+CGG | + | chr7.3:8442018-8442037 | MS.gene025640:CDS | 65.0% | |
| TCGAAACCGCCGCCACGAGA+TGG | - | chr7.3:8442009-8442028 | None:intergenic | 65.0% | |
| GCCGGCGGGTGGTAGGTTTG+AGG | + | chr7.3:8442569-8442588 | MS.gene025640:CDS | 70.0% | |
| TTCTGGCGGTGGTTCGCCGG+CGG | + | chr7.3:8442554-8442573 | MS.gene025640:CDS | 70.0% | |
| GTGGTTCGCCGGCGGGTGGT+AGG | + | chr7.3:8442562-8442581 | MS.gene025640:CDS | 75.0% | |
| TCTGGCGGTGGTTCGCCGGC+GGG | + | chr7.3:8442555-8442574 | MS.gene025640:CDS | 75.0% | |
| ! | GGCGGTGGTTCGCCGGCGGG+TGG | + | chr7.3:8442558-8442577 | MS.gene025640:CDS | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 8441931 | 8442617 | 8441931 | ID=MS.gene025640 |
| chr7.3 | mRNA | 8441931 | 8442617 | 8441931 | ID=MS.gene025640.t1;Parent=MS.gene025640 |
| chr7.3 | exon | 8441931 | 8442617 | 8441931 | ID=MS.gene025640.t1.exon1;Parent=MS.gene025640.t1 |
| chr7.3 | CDS | 8441931 | 8442617 | 8441931 | ID=cds.MS.gene025640.t1;Parent=MS.gene025640.t1 |
| Gene Sequence |
| Protein sequence |
