Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41069.t1 | XP_013467867.1 | 89.5 | 248 | 26 | 0 | 1 | 248 | 1 | 248 | 1.00E-103 | 386.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41069.t1 | Q9SJ52 | 39.6 | 245 | 127 | 5 | 1 | 242 | 1 | 227 | 3.3e-42 | 173.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41069.t1 | A0A072VIS6 | 89.5 | 248 | 26 | 0 | 1 | 248 | 1 | 248 | 7.5e-104 | 386.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene034789 | MS.gene41069 | PPI |
| MS.gene028407 | MS.gene41069 | PPI |
| MS.gene41069 | MS.gene58402 | PPI |
| MS.gene41069 | MS.gene036507 | PPI |
| MS.gene41069 | MS.gene041542 | PPI |
| MS.gene41069 | MS.gene028407 | PPI |
| MS.gene41069 | MS.gene034789 | PPI |
| MS.gene41069 | MS.gene055658 | PPI |
| MS.gene41069 | MS.gene036506 | PPI |
| MS.gene41069 | MS.gene035313 | PPI |
| MS.gene41069 | MS.gene025640 | PPI |
| MS.gene35049 | MS.gene41069 | PPI |
| MS.gene050363 | MS.gene41069 | PPI |
| MS.gene41069 | MS.gene70399 | PPI |
| MS.gene41069 | MS.gene055657 | PPI |
| MS.gene41069 | MS.gene051327 | PPI |
| MS.gene41069 | MS.gene007146 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41069.t1 | MTR_1g057270 | 94.355 | 248 | 14 | 0 | 1 | 248 | 1 | 248 | 3.38e-147 | 411 |
| MS.gene41069.t1 | MTR_4g119428 | 63.415 | 246 | 87 | 1 | 1 | 246 | 2 | 244 | 1.78e-112 | 323 |
| MS.gene41069.t1 | MTR_7g105870 | 52.720 | 239 | 96 | 4 | 4 | 241 | 5 | 227 | 4.06e-61 | 192 |
| MS.gene41069.t1 | MTR_7g106000 | 40.562 | 249 | 118 | 6 | 1 | 242 | 1 | 226 | 8.05e-59 | 186 |
| MS.gene41069.t1 | MTR_7g106010 | 37.860 | 243 | 127 | 5 | 5 | 242 | 4 | 227 | 6.93e-48 | 158 |
| MS.gene41069.t1 | MTR_7g106030 | 39.912 | 228 | 114 | 5 | 5 | 227 | 7 | 216 | 2.01e-45 | 152 |
| MS.gene41069.t1 | MTR_1g057400 | 40.000 | 205 | 112 | 5 | 43 | 242 | 11 | 209 | 3.47e-45 | 150 |
| MS.gene41069.t1 | MTR_7g105970 | 39.419 | 241 | 119 | 5 | 5 | 241 | 8 | 225 | 6.09e-44 | 148 |
| MS.gene41069.t1 | MTR_6g071410 | 42.169 | 166 | 89 | 5 | 61 | 220 | 15 | 179 | 3.40e-33 | 120 |
| MS.gene41069.t1 | MTR_6g070890 | 42.169 | 166 | 89 | 5 | 61 | 220 | 15 | 179 | 3.40e-33 | 120 |
| MS.gene41069.t1 | MTR_6g471090 | 41.765 | 170 | 91 | 6 | 57 | 220 | 10 | 177 | 5.81e-32 | 117 |
| MS.gene41069.t1 | MTR_6g070900 | 36.970 | 165 | 99 | 3 | 61 | 220 | 15 | 179 | 1.28e-29 | 110 |
| MS.gene41069.t1 | MTR_6g071400 | 36.970 | 165 | 99 | 3 | 61 | 220 | 15 | 179 | 1.28e-29 | 110 |
| MS.gene41069.t1 | MTR_6g471080 | 43.860 | 171 | 86 | 7 | 57 | 220 | 7 | 174 | 4.25e-26 | 101 |
| MS.gene41069.t1 | MTR_1g057290 | 39.521 | 167 | 95 | 4 | 81 | 242 | 52 | 217 | 2.22e-24 | 97.1 |
| MS.gene41069.t1 | MTR_2g011350 | 31.469 | 143 | 97 | 1 | 73 | 215 | 40 | 181 | 5.86e-22 | 90.5 |
| MS.gene41069.t1 | MTR_4g094322 | 57.143 | 70 | 29 | 1 | 180 | 248 | 2 | 71 | 3.72e-21 | 84.3 |
| MS.gene41069.t1 | MTR_2g048270 | 40.816 | 147 | 80 | 6 | 95 | 238 | 2 | 144 | 2.25e-20 | 85.5 |
| MS.gene41069.t1 | MTR_3g063310 | 32.386 | 176 | 103 | 5 | 75 | 246 | 87 | 250 | 9.65e-18 | 80.1 |
| MS.gene41069.t1 | MTR_1g057230 | 50.000 | 66 | 32 | 1 | 181 | 246 | 30 | 94 | 1.18e-14 | 68.2 |
| MS.gene41069.t1 | MTR_5g076170 | 28.395 | 162 | 101 | 4 | 72 | 226 | 96 | 249 | 3.67e-14 | 70.5 |
| MS.gene41069.t1 | MTR_7g118270 | 27.711 | 166 | 116 | 3 | 58 | 221 | 47 | 210 | 5.21e-14 | 69.7 |
| MS.gene41069.t1 | MTR_3g078800 | 26.708 | 161 | 115 | 3 | 60 | 218 | 73 | 232 | 7.14e-14 | 69.7 |
| MS.gene41069.t1 | MTR_5g087760 | 26.697 | 221 | 132 | 8 | 15 | 225 | 41 | 241 | 9.56e-14 | 69.3 |
| MS.gene41069.t1 | MTR_2g100060 | 21.788 | 179 | 139 | 1 | 70 | 247 | 78 | 256 | 1.13e-12 | 66.2 |
| MS.gene41069.t1 | MTR_7g106050 | 26.630 | 184 | 114 | 4 | 55 | 230 | 23 | 193 | 2.73e-12 | 64.3 |
| MS.gene41069.t1 | MTR_3g078820 | 26.897 | 145 | 103 | 3 | 75 | 218 | 44 | 186 | 4.90e-12 | 63.9 |
| MS.gene41069.t1 | MTR_1g057300 | 40.000 | 100 | 53 | 3 | 43 | 142 | 12 | 104 | 9.35e-12 | 61.2 |
| MS.gene41069.t1 | MTR_1g105570 | 24.277 | 173 | 110 | 5 | 56 | 218 | 50 | 211 | 6.25e-11 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41069.t1 | AT3G11650 | 46.862 | 239 | 116 | 6 | 6 | 241 | 8 | 238 | 8.07e-71 | 217 |
| MS.gene41069.t1 | AT2G35980 | 44.490 | 245 | 115 | 8 | 1 | 242 | 1 | 227 | 8.54e-61 | 191 |
| MS.gene41069.t1 | AT2G35460 | 39.256 | 242 | 138 | 4 | 3 | 241 | 2 | 237 | 6.09e-60 | 189 |
| MS.gene41069.t1 | AT5G06320 | 42.857 | 238 | 125 | 3 | 6 | 242 | 4 | 231 | 1.09e-54 | 176 |
| MS.gene41069.t1 | AT1G32270 | 37.013 | 154 | 97 | 0 | 78 | 231 | 1 | 154 | 1.10e-27 | 108 |
| MS.gene41069.t1 | AT1G32270 | 37.013 | 154 | 97 | 0 | 78 | 231 | 1 | 154 | 3.51e-27 | 108 |
| MS.gene41069.t1 | AT5G22870 | 27.778 | 180 | 121 | 4 | 55 | 226 | 24 | 202 | 1.72e-18 | 81.3 |
| MS.gene41069.t1 | AT3G52470 | 29.143 | 175 | 122 | 2 | 57 | 230 | 19 | 192 | 6.29e-18 | 79.7 |
| MS.gene41069.t1 | AT4G01410 | 32.317 | 164 | 103 | 3 | 57 | 216 | 44 | 203 | 1.34e-17 | 79.3 |
| MS.gene41069.t1 | AT4G09590 | 29.341 | 167 | 102 | 3 | 57 | 215 | 22 | 180 | 3.65e-16 | 75.1 |
| MS.gene41069.t1 | AT4G05220 | 25.749 | 167 | 121 | 3 | 53 | 218 | 42 | 206 | 1.74e-15 | 73.6 |
| MS.gene41069.t1 | AT1G61760 | 25.455 | 165 | 118 | 4 | 56 | 218 | 43 | 204 | 8.06e-15 | 71.6 |
| MS.gene41069.t1 | AT5G53730 | 28.000 | 150 | 104 | 3 | 68 | 214 | 38 | 186 | 2.12e-14 | 70.5 |
| MS.gene41069.t1 | AT2G35970 | 28.743 | 167 | 103 | 3 | 57 | 215 | 22 | 180 | 2.38e-14 | 70.1 |
| MS.gene41069.t1 | AT3G11660 | 29.697 | 165 | 109 | 4 | 56 | 214 | 14 | 177 | 3.63e-13 | 67.0 |
| MS.gene41069.t1 | AT3G44220 | 25.000 | 168 | 124 | 2 | 57 | 223 | 20 | 186 | 5.72e-13 | 66.2 |
| MS.gene41069.t1 | AT2G35960 | 31.858 | 113 | 69 | 2 | 73 | 177 | 37 | 149 | 2.49e-12 | 64.7 |
| MS.gene41069.t1 | AT5G36970 | 24.026 | 154 | 108 | 4 | 69 | 218 | 78 | 226 | 2.55e-11 | 62.4 |
| MS.gene41069.t1 | AT3G52460 | 26.471 | 238 | 128 | 10 | 8 | 229 | 82 | 288 | 3.03e-11 | 62.8 |
| MS.gene41069.t1 | AT1G65690 | 26.733 | 101 | 72 | 2 | 58 | 157 | 71 | 170 | 7.36e-11 | 61.2 |
Find 61 sgRNAs with CRISPR-Local
Find 65 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGAAAATTGATGGGGTTTA+TGG | 0.105048 | 1.3:-42284769 | MS.gene41069:CDS |
| ACATAACGGTTCTTCTTCTT+TGG | 0.195709 | 1.3:-42284641 | MS.gene41069:CDS |
| GGGATTACAAATGGAGATTA+TGG | 0.235819 | 1.3:-42284588 | MS.gene41069:CDS |
| TGATCCTCGGGTTCCTCTTC+TGG | 0.237356 | 1.3:-42285101 | MS.gene41069:CDS |
| TTTGAATGAAGATCAGAATA+AGG | 0.294255 | 1.3:-42284803 | MS.gene41069:CDS |
| TAAATACCAACTCTTCGATT+AGG | 0.295908 | 1.3:+42284958 | None:intergenic |
| TGCTGTGGAGGAGGGATTGA+TGG | 0.300309 | 1.3:+42285270 | None:intergenic |
| TTGAAATGAGGTTTAAATAT+TGG | 0.313606 | 1.3:-42284726 | MS.gene41069:CDS |
| CATAACGGTTCTTCTTCTTT+GGG | 0.319706 | 1.3:-42284640 | MS.gene41069:CDS |
| AAATACCAACTCTTCGATTA+GGG | 0.324696 | 1.3:+42284959 | None:intergenic |
| ACTTGTTTATCTTTGAAAAC+AGG | 0.325553 | 1.3:+42284832 | None:intergenic |
| AGCGCCGTTGAGTTGATTTC+CGG | 0.331355 | 1.3:+42285302 | None:intergenic |
| CGGTGAAATTGAATTGCGTT+AGG | 0.356370 | 1.3:+42285031 | None:intergenic |
| CAACTCAACGGCGCTTATTA+CGG | 0.374153 | 1.3:-42285294 | MS.gene41069:CDS |
| TTTGATAAGGAGAAAATTGA+TGG | 0.386908 | 1.3:-42284778 | MS.gene41069:CDS |
| ATCGTCATCCTCGTGATCCT+CGG | 0.393582 | 1.3:-42285114 | MS.gene41069:CDS |
| TTGAAGCTACTGAATGTGAT+TGG | 0.408421 | 1.3:-42284609 | MS.gene41069:CDS |
| TGTCTCTGCGGCTGCGTTCG+TGG | 0.421661 | 1.3:-42285198 | MS.gene41069:CDS |
| GGCTTCGGTTGCTGTGGAGG+AGG | 0.424103 | 1.3:+42285261 | None:intergenic |
| TCAGAATAAGGAGTTTGATA+AGG | 0.436594 | 1.3:-42284791 | MS.gene41069:CDS |
| TTGCGGTGTCGACGAGGCTT+CGG | 0.436719 | 1.3:+42285246 | None:intergenic |
| TAAGGTTCGTTGTGATTTGA+AGG | 0.444006 | 1.3:-42284677 | MS.gene41069:CDS |
| GGTTCTTCTTCTTTGGGGCA+TGG | 0.470288 | 1.3:-42284634 | MS.gene41069:CDS |
| GGTGAAATTGAATTGCGTTA+GGG | 0.471511 | 1.3:+42285032 | None:intergenic |
| CGTTAGGGTTGCATCGTTGA+CGG | 0.471907 | 1.3:+42285047 | None:intergenic |
| GTAGTGAAGTGTGTTGTTAT+CGG | 0.474500 | 1.3:+42285011 | None:intergenic |
| ACGGTGAATTTGACGACGTT+AGG | 0.476132 | 1.3:+42285066 | None:intergenic |
| TTCAAATCACAACGAACCTT+AGG | 0.482759 | 1.3:+42284679 | None:intergenic |
| TGAAGCTACTGAATGTGATT+GGG | 0.483584 | 1.3:-42284608 | MS.gene41069:CDS |
| CACCGCAACGACGACGGTTG+CGG | 0.485935 | 1.3:-42285231 | MS.gene41069:CDS |
| AATGTGATTGGGATTACAAA+TGG | 0.489479 | 1.3:-42284597 | MS.gene41069:CDS |
| CGAGGCTTCGGTTGCTGTGG+AGG | 0.491545 | 1.3:+42285258 | None:intergenic |
| GCTGTGGAGGAGGGATTGAT+GGG | 0.498050 | 1.3:+42285271 | None:intergenic |
| TCGTCATCCTCGTGATCCTC+GGG | 0.502379 | 1.3:-42285113 | MS.gene41069:CDS |
| CTTGTTTATCTTTGAAAACA+GGG | 0.515714 | 1.3:+42284833 | None:intergenic |
| TTAAGATGGTGATTGAAATG+AGG | 0.522786 | 1.3:-42284738 | MS.gene41069:CDS |
| ATAACGGTTCTTCTTCTTTG+GGG | 0.527432 | 1.3:-42284639 | MS.gene41069:CDS |
| GCTTCGGTTGCTGTGGAGGA+GGG | 0.533543 | 1.3:+42285262 | None:intergenic |
| GATTGGACATGCGAAACCTA+AGG | 0.537152 | 1.3:-42284695 | MS.gene41069:CDS |
| CAGTTTGCGAATCAAACCCT+AGG | 0.540095 | 1.3:-42284895 | MS.gene41069:CDS |
| TTGATAAGGAGAAAATTGAT+GGG | 0.540563 | 1.3:-42284777 | MS.gene41069:CDS |
| GGCTGCGTTCGTGGCTGTTG+CGG | 0.543514 | 1.3:-42285189 | MS.gene41069:CDS |
| CGTAACCCTAATCGAAGAGT+TGG | 0.550944 | 1.3:-42284964 | MS.gene41069:CDS |
| GATGCTGAAAGAATCTCCCT+AGG | 0.552763 | 1.3:+42284878 | None:intergenic |
| GAACCGTTATGTGATTTCAA+AGG | 0.571830 | 1.3:+42284652 | None:intergenic |
| CGACGAGGCTTCGGTTGCTG+TGG | 0.573653 | 1.3:+42285255 | None:intergenic |
| TGCCGCAACCGTCGTCGTTG+CGG | 0.575842 | 1.3:+42285229 | None:intergenic |
| CTATGACACAATTGAAACGA+TGG | 0.582839 | 1.3:-42284935 | MS.gene41069:CDS |
| ATGCTGAAAGAATCTCCCTA+GGG | 0.603920 | 1.3:+42284879 | None:intergenic |
| CGTCGACACCGCAACGACGA+CGG | 0.610999 | 1.3:-42285237 | MS.gene41069:CDS |
| GTGCCTTTGAAATCACATAA+CGG | 0.619499 | 1.3:-42284655 | MS.gene41069:CDS |
| TGATAAGGAGAAAATTGATG+GGG | 0.622850 | 1.3:-42284776 | MS.gene41069:CDS |
| GTCGAACAATGAGCCAGAAG+AGG | 0.628717 | 1.3:+42285088 | None:intergenic |
| CGATCTCGCTCTTAACGTCA+CGG | 0.640093 | 1.3:-42284989 | MS.gene41069:CDS |
| CACGAGGATGACGATGATTG+TGG | 0.647428 | 1.3:+42285122 | None:intergenic |
| AGTTTGCGAATCAAACCCTA+GGG | 0.648044 | 1.3:-42284894 | MS.gene41069:CDS |
| TGAGCCAGAAGAGGAACCCG+AGG | 0.651046 | 1.3:+42285097 | None:intergenic |
| AGAGGAACCCGAGGATCACG+AGG | 0.656504 | 1.3:+42285106 | None:intergenic |
| GGCATCTGCAGCTGTCTCTG+CGG | 0.663821 | 1.3:-42285210 | MS.gene41069:CDS |
| TCGTCGTTGCGGTGTCGACG+AGG | 0.664976 | 1.3:+42285240 | None:intergenic |
| ATGGCCGGAAATCAACTCAA+CGG | 0.693203 | 1.3:-42285306 | MS.gene41069:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATATTGGTTTTTTAAGAT+TGG | - | chr1.3:42285176-42285195 | MS.gene41069:CDS | 15.0% |
| !! | TTGAAATGAGGTTTAAATAT+TGG | - | chr1.3:42285162-42285181 | MS.gene41069:CDS | 20.0% |
| !!! | TTATGGAATTGATTTTAAGA+TGG | - | chr1.3:42285136-42285155 | MS.gene41069:CDS | 20.0% |
| ! | TTGATAAGGAGAAAATTGAT+GGG | - | chr1.3:42285111-42285130 | MS.gene41069:CDS | 25.0% |
| ! | TTTGAATGAAGATCAGAATA+AGG | - | chr1.3:42285085-42285104 | MS.gene41069:CDS | 25.0% |
| ! | TTTGATAAGGAGAAAATTGA+TGG | - | chr1.3:42285110-42285129 | MS.gene41069:CDS | 25.0% |
| !! | ACTTGTTTATCTTTGAAAAC+AGG | + | chr1.3:42285059-42285078 | None:intergenic | 25.0% |
| !! | CTTGTTTATCTTTGAAAACA+GGG | + | chr1.3:42285058-42285077 | None:intergenic | 25.0% |
| AAATACCAACTCTTCGATTA+GGG | + | chr1.3:42284932-42284951 | None:intergenic | 30.0% | |
| AATGTGATTGGGATTACAAA+TGG | - | chr1.3:42285291-42285310 | MS.gene41069:CDS | 30.0% | |
| TAAATACCAACTCTTCGATT+AGG | + | chr1.3:42284933-42284952 | None:intergenic | 30.0% | |
| TCAGAATAAGGAGTTTGATA+AGG | - | chr1.3:42285097-42285116 | MS.gene41069:CDS | 30.0% | |
| TGATAAGGAGAAAATTGATG+GGG | - | chr1.3:42285112-42285131 | MS.gene41069:CDS | 30.0% | |
| TTAAGATGGTGATTGAAATG+AGG | - | chr1.3:42285150-42285169 | MS.gene41069:CDS | 30.0% | |
| ACATAACGGTTCTTCTTCTT+TGG | - | chr1.3:42285247-42285266 | MS.gene41069:CDS | 35.0% | |
| ATAACGGTTCTTCTTCTTTG+GGG | - | chr1.3:42285249-42285268 | MS.gene41069:CDS | 35.0% | |
| CATAACGGTTCTTCTTCTTT+GGG | - | chr1.3:42285248-42285267 | MS.gene41069:CDS | 35.0% | |
| CTATGACACAATTGAAACGA+TGG | - | chr1.3:42284953-42284972 | MS.gene41069:CDS | 35.0% | |
| GAACCGTTATGTGATTTCAA+AGG | + | chr1.3:42285239-42285258 | None:intergenic | 35.0% | |
| GAGAAAATTGATGGGGTTTA+TGG | - | chr1.3:42285119-42285138 | MS.gene41069:CDS | 35.0% | |
| GGGATTACAAATGGAGATTA+TGG | - | chr1.3:42285300-42285319 | MS.gene41069:CDS | 35.0% | |
| GGTGAAATTGAATTGCGTTA+GGG | + | chr1.3:42284859-42284878 | None:intergenic | 35.0% | |
| TAAGGTTCGTTGTGATTTGA+AGG | - | chr1.3:42285211-42285230 | MS.gene41069:CDS | 35.0% | |
| TGAAGCTACTGAATGTGATT+GGG | - | chr1.3:42285280-42285299 | MS.gene41069:CDS | 35.0% | |
| TTCAAATCACAACGAACCTT+AGG | + | chr1.3:42285212-42285231 | None:intergenic | 35.0% | |
| TTGAAGCTACTGAATGTGAT+TGG | - | chr1.3:42285279-42285298 | MS.gene41069:CDS | 35.0% | |
| ! | GTAGTGAAGTGTGTTGTTAT+CGG | + | chr1.3:42284880-42284899 | None:intergenic | 35.0% |
| ! | TGAAACGATGGCGTTTTATA+AGG | - | chr1.3:42284965-42284984 | MS.gene41069:CDS | 35.0% |
| ! | TGCATTTTCAACTGCATCTT+AGG | - | chr1.3:42284723-42284742 | MS.gene41069:CDS | 35.0% |
| !! | GTGCCTTTGAAATCACATAA+CGG | - | chr1.3:42285233-42285252 | MS.gene41069:CDS | 35.0% |
| AGTTTGCGAATCAAACCCTA+GGG | - | chr1.3:42284994-42285013 | MS.gene41069:CDS | 40.0% | |
| ATGCTGAAAGAATCTCCCTA+GGG | + | chr1.3:42285012-42285031 | None:intergenic | 40.0% | |
| CGGTGAAATTGAATTGCGTT+AGG | + | chr1.3:42284860-42284879 | None:intergenic | 40.0% | |
| ACGGTGAATTTGACGACGTT+AGG | + | chr1.3:42284825-42284844 | None:intergenic | 45.0% | |
| ATGGCCGGAAATCAACTCAA+CGG | - | chr1.3:42284582-42284601 | MS.gene41069:CDS | 45.0% | |
| CAACTCAACGGCGCTTATTA+CGG | - | chr1.3:42284594-42284613 | MS.gene41069:CDS | 45.0% | |
| CAGTTTGCGAATCAAACCCT+AGG | - | chr1.3:42284993-42285012 | MS.gene41069:CDS | 45.0% | |
| CGTAACCCTAATCGAAGAGT+TGG | - | chr1.3:42284924-42284943 | MS.gene41069:CDS | 45.0% | |
| GATGCTGAAAGAATCTCCCT+AGG | + | chr1.3:42285013-42285032 | None:intergenic | 45.0% | |
| GATTGGACATGCGAAACCTA+AGG | - | chr1.3:42285193-42285212 | MS.gene41069:CDS | 45.0% | |
| ATCGTCATCCTCGTGATCCT+CGG | - | chr1.3:42284774-42284793 | MS.gene41069:CDS | 50.0% | |
| CACGAGGATGACGATGATTG+TGG | + | chr1.3:42284769-42284788 | None:intergenic | 50.0% | |
| CGATCTCGCTCTTAACGTCA+CGG | - | chr1.3:42284899-42284918 | MS.gene41069:CDS | 50.0% | |
| CGTTAGGGTTGCATCGTTGA+CGG | + | chr1.3:42284844-42284863 | None:intergenic | 50.0% | |
| GTCGAACAATGAGCCAGAAG+AGG | + | chr1.3:42284803-42284822 | None:intergenic | 50.0% | |
| !! | AGCGCCGTTGAGTTGATTTC+CGG | + | chr1.3:42284589-42284608 | None:intergenic | 50.0% |
| !! | GGTTCTTCTTCTTTGGGGCA+TGG | - | chr1.3:42285254-42285273 | MS.gene41069:CDS | 50.0% |
| GCTGTGGAGGAGGGATTGAT+GGG | + | chr1.3:42284620-42284639 | None:intergenic | 55.0% | |
| TCGTCATCCTCGTGATCCTC+GGG | - | chr1.3:42284775-42284794 | MS.gene41069:CDS | 55.0% | |
| TGATCCTCGGGTTCCTCTTC+TGG | - | chr1.3:42284787-42284806 | MS.gene41069:CDS | 55.0% | |
| TGCTGTGGAGGAGGGATTGA+TGG | + | chr1.3:42284621-42284640 | None:intergenic | 55.0% | |
| AGAGGAACCCGAGGATCACG+AGG | + | chr1.3:42284785-42284804 | None:intergenic | 60.0% | |
| GCTTCGGTTGCTGTGGAGGA+GGG | + | chr1.3:42284629-42284648 | None:intergenic | 60.0% | |
| GGCATCTGCAGCTGTCTCTG+CGG | - | chr1.3:42284678-42284697 | MS.gene41069:CDS | 60.0% | |
| TGAGCCAGAAGAGGAACCCG+AGG | + | chr1.3:42284794-42284813 | None:intergenic | 60.0% | |
| !! | TTGCGGTGTCGACGAGGCTT+CGG | + | chr1.3:42284645-42284664 | None:intergenic | 60.0% |
| CACCGCAACGACGACGGTTG+CGG | - | chr1.3:42284657-42284676 | MS.gene41069:CDS | 65.0% | |
| CGACGAGGCTTCGGTTGCTG+TGG | + | chr1.3:42284636-42284655 | None:intergenic | 65.0% | |
| CGAGGCTTCGGTTGCTGTGG+AGG | + | chr1.3:42284633-42284652 | None:intergenic | 65.0% | |
| CGTCGACACCGCAACGACGA+CGG | - | chr1.3:42284651-42284670 | MS.gene41069:CDS | 65.0% | |
| GGCTGCGTTCGTGGCTGTTG+CGG | - | chr1.3:42284699-42284718 | MS.gene41069:CDS | 65.0% | |
| GGCTTCGGTTGCTGTGGAGG+AGG | + | chr1.3:42284630-42284649 | None:intergenic | 65.0% | |
| TGCCGCAACCGTCGTCGTTG+CGG | + | chr1.3:42284662-42284681 | None:intergenic | 65.0% | |
| TGTCTCTGCGGCTGCGTTCG+TGG | - | chr1.3:42284690-42284709 | MS.gene41069:CDS | 65.0% | |
| !! | TCGTCGTTGCGGTGTCGACG+AGG | + | chr1.3:42284651-42284670 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 42284582 | 42285328 | 42284582 | ID=MS.gene41069 |
| chr1.3 | mRNA | 42284582 | 42285328 | 42284582 | ID=MS.gene41069.t1;Parent=MS.gene41069 |
| chr1.3 | exon | 42284582 | 42285328 | 42284582 | ID=MS.gene41069.t1.exon1;Parent=MS.gene41069.t1 |
| chr1.3 | CDS | 42284582 | 42285328 | 42284582 | ID=cds.MS.gene41069.t1;Parent=MS.gene41069.t1 |
| Gene Sequence |
| Protein sequence |
