Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055658.t1 | XP_013467867.1 | 95.2 | 248 | 12 | 0 | 1 | 248 | 1 | 248 | 2.70E-104 | 388.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055658.t1 | Q9SJ52 | 38.4 | 245 | 130 | 5 | 1 | 242 | 1 | 227 | 5.3e-40 | 166.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055658.t1 | A0A072VIS6 | 95.2 | 248 | 12 | 0 | 1 | 248 | 1 | 248 | 2.0e-104 | 388.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene041542 | MS.gene055658 | PPI |
| MS.gene007146 | MS.gene055658 | PPI |
| MS.gene055658 | MS.gene055657 | PPI |
| MS.gene036506 | MS.gene055658 | PPI |
| MS.gene055658 | MS.gene035313 | PPI |
| MS.gene70399 | MS.gene055658 | PPI |
| MS.gene051327 | MS.gene055658 | PPI |
| MS.gene41069 | MS.gene055658 | PPI |
| MS.gene036507 | MS.gene055658 | PPI |
| MS.gene025640 | MS.gene055658 | PPI |
| MS.gene050363 | MS.gene055658 | PPI |
| MS.gene055658 | MS.gene58402 | PPI |
| MS.gene35049 | MS.gene055658 | PPI |
| MS.gene034789 | MS.gene055658 | PPI |
| MS.gene028407 | MS.gene055658 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055658.t1 | MTR_1g057270 | 95.161 | 248 | 12 | 0 | 1 | 248 | 1 | 248 | 2.87e-149 | 416 |
| MS.gene055658.t1 | MTR_4g119428 | 62.602 | 246 | 89 | 1 | 1 | 246 | 2 | 244 | 1.34e-110 | 318 |
| MS.gene055658.t1 | MTR_7g105870 | 51.883 | 239 | 98 | 4 | 4 | 241 | 5 | 227 | 5.21e-61 | 192 |
| MS.gene055658.t1 | MTR_7g106000 | 39.357 | 249 | 121 | 6 | 1 | 242 | 1 | 226 | 3.09e-57 | 182 |
| MS.gene055658.t1 | MTR_7g106010 | 36.214 | 243 | 131 | 5 | 5 | 242 | 4 | 227 | 9.40e-46 | 152 |
| MS.gene055658.t1 | MTR_1g057400 | 39.024 | 205 | 114 | 5 | 43 | 242 | 11 | 209 | 1.40e-44 | 149 |
| MS.gene055658.t1 | MTR_7g106030 | 39.035 | 228 | 116 | 5 | 5 | 227 | 7 | 216 | 6.96e-44 | 148 |
| MS.gene055658.t1 | MTR_7g105970 | 39.419 | 241 | 119 | 5 | 5 | 241 | 8 | 225 | 5.30e-43 | 145 |
| MS.gene055658.t1 | MTR_6g071410 | 40.361 | 166 | 92 | 5 | 61 | 220 | 15 | 179 | 2.77e-31 | 115 |
| MS.gene055658.t1 | MTR_6g070890 | 40.361 | 166 | 92 | 5 | 61 | 220 | 15 | 179 | 2.77e-31 | 115 |
| MS.gene055658.t1 | MTR_6g471090 | 40.588 | 170 | 93 | 6 | 57 | 220 | 10 | 177 | 3.69e-30 | 112 |
| MS.gene055658.t1 | MTR_6g070900 | 35.152 | 165 | 102 | 3 | 61 | 220 | 15 | 179 | 1.05e-27 | 105 |
| MS.gene055658.t1 | MTR_6g071400 | 35.152 | 165 | 102 | 3 | 61 | 220 | 15 | 179 | 1.05e-27 | 105 |
| MS.gene055658.t1 | MTR_6g471080 | 42.105 | 171 | 89 | 7 | 57 | 220 | 7 | 174 | 1.04e-25 | 100 |
| MS.gene055658.t1 | MTR_1g057290 | 38.323 | 167 | 97 | 4 | 81 | 242 | 52 | 217 | 1.66e-24 | 97.4 |
| MS.gene055658.t1 | MTR_4g094322 | 57.143 | 70 | 29 | 1 | 180 | 248 | 2 | 71 | 3.97e-21 | 84.3 |
| MS.gene055658.t1 | MTR_2g011350 | 30.070 | 143 | 99 | 1 | 73 | 215 | 40 | 181 | 8.30e-21 | 87.4 |
| MS.gene055658.t1 | MTR_2g048270 | 39.456 | 147 | 82 | 6 | 95 | 238 | 2 | 144 | 1.65e-18 | 80.5 |
| MS.gene055658.t1 | MTR_3g063310 | 31.818 | 176 | 104 | 5 | 75 | 246 | 87 | 250 | 9.52e-17 | 77.4 |
| MS.gene055658.t1 | MTR_1g057230 | 50.000 | 66 | 32 | 1 | 181 | 246 | 30 | 94 | 1.30e-14 | 67.8 |
| MS.gene055658.t1 | MTR_7g118270 | 29.091 | 165 | 110 | 4 | 62 | 221 | 48 | 210 | 1.04e-13 | 68.6 |
| MS.gene055658.t1 | MTR_3g078800 | 24.845 | 161 | 118 | 3 | 60 | 218 | 73 | 232 | 3.59e-13 | 67.8 |
| MS.gene055658.t1 | MTR_5g076170 | 27.778 | 162 | 102 | 4 | 72 | 226 | 96 | 249 | 4.41e-13 | 67.4 |
| MS.gene055658.t1 | MTR_2g086790 | 23.196 | 194 | 135 | 4 | 56 | 237 | 19 | 210 | 1.32e-12 | 65.5 |
| MS.gene055658.t1 | MTR_5g087760 | 24.887 | 221 | 136 | 7 | 15 | 225 | 41 | 241 | 2.03e-12 | 65.5 |
| MS.gene055658.t1 | MTR_1g105570 | 22.467 | 227 | 151 | 6 | 1 | 218 | 1 | 211 | 4.33e-12 | 64.3 |
| MS.gene055658.t1 | MTR_2g100060 | 21.229 | 179 | 140 | 1 | 70 | 247 | 78 | 256 | 4.57e-12 | 64.7 |
| MS.gene055658.t1 | MTR_7g106050 | 26.630 | 184 | 114 | 4 | 55 | 230 | 23 | 193 | 6.17e-12 | 63.5 |
| MS.gene055658.t1 | MTR_3g078820 | 26.207 | 145 | 104 | 3 | 75 | 218 | 44 | 186 | 1.22e-11 | 62.8 |
| MS.gene055658.t1 | MTR_1g057300 | 40.000 | 100 | 53 | 3 | 43 | 142 | 12 | 104 | 2.00e-11 | 60.1 |
| MS.gene055658.t1 | MTR_1g057420 | 25.862 | 174 | 109 | 4 | 76 | 239 | 39 | 202 | 9.59e-11 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055658.t1 | AT3G11650 | 46.025 | 239 | 118 | 6 | 6 | 241 | 8 | 238 | 2.13e-70 | 216 |
| MS.gene055658.t1 | AT2G35460 | 38.843 | 242 | 139 | 4 | 3 | 241 | 2 | 237 | 2.53e-60 | 190 |
| MS.gene055658.t1 | AT2G35980 | 43.265 | 245 | 118 | 8 | 1 | 242 | 1 | 227 | 3.01e-59 | 187 |
| MS.gene055658.t1 | AT5G06320 | 43.277 | 238 | 124 | 4 | 6 | 242 | 4 | 231 | 1.21e-55 | 178 |
| MS.gene055658.t1 | AT1G32270 | 36.364 | 154 | 98 | 0 | 78 | 231 | 1 | 154 | 8.25e-27 | 106 |
| MS.gene055658.t1 | AT1G32270 | 36.364 | 154 | 98 | 0 | 78 | 231 | 1 | 154 | 2.53e-26 | 106 |
| MS.gene055658.t1 | AT3G52470 | 28.000 | 175 | 124 | 2 | 57 | 230 | 19 | 192 | 9.59e-18 | 79.3 |
| MS.gene055658.t1 | AT5G22870 | 27.778 | 180 | 121 | 4 | 55 | 226 | 24 | 202 | 2.68e-17 | 78.2 |
| MS.gene055658.t1 | AT4G01410 | 31.098 | 164 | 105 | 3 | 57 | 216 | 44 | 203 | 6.80e-17 | 77.4 |
| MS.gene055658.t1 | AT4G09590 | 29.341 | 167 | 102 | 3 | 57 | 215 | 22 | 180 | 1.77e-16 | 75.9 |
| MS.gene055658.t1 | AT4G05220 | 26.347 | 167 | 120 | 3 | 53 | 218 | 42 | 206 | 2.81e-16 | 75.9 |
| MS.gene055658.t1 | AT2G35970 | 28.743 | 167 | 103 | 3 | 57 | 215 | 22 | 180 | 1.29e-14 | 70.9 |
| MS.gene055658.t1 | AT1G61760 | 24.848 | 165 | 119 | 4 | 56 | 218 | 43 | 204 | 6.45e-14 | 69.3 |
| MS.gene055658.t1 | AT5G53730 | 27.333 | 150 | 105 | 3 | 68 | 214 | 38 | 186 | 9.87e-14 | 68.6 |
| MS.gene055658.t1 | AT3G44220 | 25.000 | 168 | 124 | 2 | 57 | 223 | 20 | 186 | 5.28e-13 | 66.2 |
| MS.gene055658.t1 | AT2G27080 | 24.444 | 180 | 124 | 4 | 43 | 218 | 68 | 239 | 6.06e-13 | 67.0 |
| MS.gene055658.t1 | AT2G27080 | 24.444 | 180 | 124 | 4 | 43 | 218 | 68 | 239 | 6.06e-13 | 67.0 |
| MS.gene055658.t1 | AT3G11660 | 29.091 | 165 | 110 | 4 | 56 | 214 | 14 | 177 | 9.12e-13 | 65.9 |
| MS.gene055658.t1 | AT2G35960 | 31.858 | 113 | 69 | 2 | 73 | 177 | 37 | 149 | 1.29e-12 | 65.5 |
| MS.gene055658.t1 | AT5G36970 | 24.675 | 154 | 107 | 4 | 69 | 218 | 78 | 226 | 3.91e-12 | 64.7 |
| MS.gene055658.t1 | AT1G65690 | 28.713 | 101 | 70 | 2 | 58 | 157 | 71 | 170 | 1.34e-11 | 63.2 |
Find 64 sgRNAs with CRISPR-Local
Find 69 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGAAAATTGATGGGGTTTA+TGG | 0.105048 | 1.4:+48056130 | MS.gene055658:CDS |
| ACATAACGGTTCTTCTTCTT+TGG | 0.195709 | 1.4:+48056258 | MS.gene055658:CDS |
| GGGATTACAAATGGAGATTA+TGG | 0.235819 | 1.4:+48056311 | MS.gene055658:CDS |
| TGATCCTCGGGTTCCTCTTC+TGG | 0.237356 | 1.4:+48055798 | MS.gene055658:CDS |
| TTTGAATGAAGATCAGAATA+AGG | 0.294255 | 1.4:+48056096 | MS.gene055658:CDS |
| TAAATACCAACTCTTCGATT+AGG | 0.295908 | 1.4:-48055941 | None:intergenic |
| TGCGGTGGAGGAGGGATTGA+TGG | 0.311823 | 1.4:-48055629 | None:intergenic |
| TTGAAATGAGGTTTAAATAT+TGG | 0.313606 | 1.4:+48056173 | MS.gene055658:CDS |
| CATAACGGTTCTTCTTCTTT+GGG | 0.319706 | 1.4:+48056259 | MS.gene055658:CDS |
| AAATACCAACTCTTCGATTA+GGG | 0.324696 | 1.4:-48055940 | None:intergenic |
| ACTTGTTTATCTTTGAAAAC+AGG | 0.325553 | 1.4:-48056067 | None:intergenic |
| AGCGCCGTTGAGTTGATTTC+CGG | 0.331355 | 1.4:-48055597 | None:intergenic |
| CAACTCAACGGCGCTTATTA+CGG | 0.374153 | 1.4:+48055605 | MS.gene055658:CDS |
| CGAGGCTTCGGTTGCGGTGG+AGG | 0.379960 | 1.4:-48055641 | None:intergenic |
| GGCTTCGGTTGCGGTGGAGG+AGG | 0.383123 | 1.4:-48055638 | None:intergenic |
| TTTGATAAGGAGAAAATTGA+TGG | 0.386908 | 1.4:+48056121 | MS.gene055658:CDS |
| GTCATCATCCTCGTGATCCT+CGG | 0.401598 | 1.4:+48055785 | MS.gene055658:CDS |
| TTGAAGCTACTGAGTGTGAT+TGG | 0.406578 | 1.4:+48056290 | MS.gene055658:CDS |
| TCAGAATAAGGAGTTTGATA+AGG | 0.436594 | 1.4:+48056108 | MS.gene055658:CDS |
| TTGCGGTGTCGACGAGGCTT+CGG | 0.436719 | 1.4:-48055653 | None:intergenic |
| TGTCTCTGCGGCTGCGTTCG+CGG | 0.440618 | 1.4:+48055701 | MS.gene055658:CDS |
| TAAGGTTCGTTGTGATTTGA+AGG | 0.444006 | 1.4:+48056222 | MS.gene055658:CDS |
| ATAAAACGCCATCGTTTCAA+TGG | 0.453733 | 1.4:-48055972 | None:intergenic |
| CATTGAAATTGAATTGCGTA+AGG | 0.466799 | 1.4:-48055868 | None:intergenic |
| GGTTCTTCTTCTTTGGGGCA+TGG | 0.470288 | 1.4:+48056265 | MS.gene055658:CDS |
| ACGGTGAATTTGACGACGTT+AGG | 0.476132 | 1.4:-48055833 | None:intergenic |
| TGAAGCTACTGAGTGTGATT+GGG | 0.477818 | 1.4:+48056291 | MS.gene055658:CDS |
| TTCAAATCACAACGAACCTT+AGG | 0.482759 | 1.4:-48056220 | None:intergenic |
| CACCGCAACGACGACGGTTG+CGG | 0.485935 | 1.4:+48055668 | MS.gene055658:CDS |
| CGTAAGGGTTGCATCGTTGA+CGG | 0.489687 | 1.4:-48055852 | None:intergenic |
| TGTCGACGAGGCTTCGGTTG+CGG | 0.501015 | 1.4:-48055647 | None:intergenic |
| TCATCATCCTCGTGATCCTC+GGG | 0.502379 | 1.4:+48055786 | MS.gene055658:CDS |
| GCTTCGGTTGCGGTGGAGGA+GGG | 0.506293 | 1.4:-48055637 | None:intergenic |
| CTTGTTTATCTTTGAAAACA+GGG | 0.515714 | 1.4:-48056066 | None:intergenic |
| GGCTGCGTTCGCGGCTGTTG+CGG | 0.516805 | 1.4:+48055710 | MS.gene055658:CDS |
| AGTGTGATTGGGATTACAAA+TGG | 0.520332 | 1.4:+48056302 | MS.gene055658:CDS |
| TTAAGATGGTGATTGAAATG+AGG | 0.522786 | 1.4:+48056161 | MS.gene055658:CDS |
| ATAACGGTTCTTCTTCTTTG+GGG | 0.527432 | 1.4:+48056260 | MS.gene055658:CDS |
| CAGTTTGCGAATCAAACCCT+AGG | 0.540095 | 1.4:+48056004 | MS.gene055658:CDS |
| TTGATAAGGAGAAAATTGAT+GGG | 0.540563 | 1.4:+48056122 | MS.gene055658:CDS |
| GATTGGGCATGCGAAACCTA+AGG | 0.546339 | 1.4:+48056204 | MS.gene055658:CDS |
| CGTAACCCTAATCGAAGAGT+TGG | 0.550944 | 1.4:+48055935 | MS.gene055658:CDS |
| GATGCTGAAAGAATCTCCCT+AGG | 0.552763 | 1.4:-48056021 | None:intergenic |
| GCGGTGGAGGAGGGATTGAT+GGG | 0.560663 | 1.4:-48055628 | None:intergenic |
| ATTGAAATTGAATTGCGTAA+GGG | 0.565383 | 1.4:-48055867 | None:intergenic |
| GAACCGTTATGTGATTTCAA+AGG | 0.571830 | 1.4:-48056247 | None:intergenic |
| CGACGAGGCTTCGGTTGCGG+TGG | 0.575352 | 1.4:-48055644 | None:intergenic |
| TGCCGCAACCGTCGTCGTTG+CGG | 0.575842 | 1.4:-48055670 | None:intergenic |
| CTATGACACCATTGAAACGA+TGG | 0.601443 | 1.4:+48055964 | MS.gene055658:CDS |
| CGTTAAGAGCGAGATCGTAG+TGG | 0.601523 | 1.4:-48055904 | None:intergenic |
| ATGCTGAAAGAATCTCCCTA+GGG | 0.603920 | 1.4:-48056020 | None:intergenic |
| GAGATCGTAGTGGAGTGTGT+TGG | 0.610886 | 1.4:-48055894 | None:intergenic |
| CGTCGACACCGCAACGACGA+CGG | 0.610999 | 1.4:+48055662 | MS.gene055658:CDS |
| GTGCCTTTGAAATCACATAA+CGG | 0.619499 | 1.4:+48056244 | MS.gene055658:CDS |
| TGATAAGGAGAAAATTGATG+GGG | 0.622850 | 1.4:+48056123 | MS.gene055658:CDS |
| GTCGAACAATGAGCCAGAAG+AGG | 0.628717 | 1.4:-48055811 | None:intergenic |
| CGATCTCGCTCTTAACGTCA+CGG | 0.640093 | 1.4:+48055910 | MS.gene055658:CDS |
| AGTTTGCGAATCAAACCCTA+GGG | 0.648044 | 1.4:+48056005 | MS.gene055658:CDS |
| TGAGCCAGAAGAGGAACCCG+AGG | 0.651046 | 1.4:-48055802 | None:intergenic |
| AGAGGAACCCGAGGATCACG+AGG | 0.656504 | 1.4:-48055793 | None:intergenic |
| GGCATCTGCAGCTGTCTCTG+CGG | 0.663821 | 1.4:+48055689 | MS.gene055658:CDS |
| TCGTCGTTGCGGTGTCGACG+AGG | 0.664976 | 1.4:-48055659 | None:intergenic |
| CACGAGGATGATGACGATTG+TGG | 0.692820 | 1.4:-48055777 | None:intergenic |
| ATGGCCGGAAATCAACTCAA+CGG | 0.693203 | 1.4:+48055593 | MS.gene055658:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATATTGGTTTTTTAAGAT+TGG | + | chr1.4:48056187-48056206 | MS.gene055658:CDS | 15.0% |
| !!! | AATATTGGTTTTTTAAGATT+GGG | + | chr1.4:48056188-48056207 | MS.gene055658:CDS | 15.0% |
| !! | TTGAAATGAGGTTTAAATAT+TGG | + | chr1.4:48056173-48056192 | MS.gene055658:CDS | 20.0% |
| !!! | TTATGGAATTGATTTTAAGA+TGG | + | chr1.4:48056147-48056166 | MS.gene055658:CDS | 20.0% |
| ! | ATTGAAATTGAATTGCGTAA+GGG | - | chr1.4:48055870-48055889 | None:intergenic | 25.0% |
| ! | TTGATAAGGAGAAAATTGAT+GGG | + | chr1.4:48056122-48056141 | MS.gene055658:CDS | 25.0% |
| ! | TTTGAATGAAGATCAGAATA+AGG | + | chr1.4:48056096-48056115 | MS.gene055658:CDS | 25.0% |
| ! | TTTGATAAGGAGAAAATTGA+TGG | + | chr1.4:48056121-48056140 | MS.gene055658:CDS | 25.0% |
| !! | ACTTGTTTATCTTTGAAAAC+AGG | - | chr1.4:48056070-48056089 | None:intergenic | 25.0% |
| !! | CTTGTTTATCTTTGAAAACA+GGG | - | chr1.4:48056069-48056088 | None:intergenic | 25.0% |
| AAATACCAACTCTTCGATTA+GGG | - | chr1.4:48055943-48055962 | None:intergenic | 30.0% | |
| CATTGAAATTGAATTGCGTA+AGG | - | chr1.4:48055871-48055890 | None:intergenic | 30.0% | |
| TAAATACCAACTCTTCGATT+AGG | - | chr1.4:48055944-48055963 | None:intergenic | 30.0% | |
| TCAGAATAAGGAGTTTGATA+AGG | + | chr1.4:48056108-48056127 | MS.gene055658:CDS | 30.0% | |
| TGATAAGGAGAAAATTGATG+GGG | + | chr1.4:48056123-48056142 | MS.gene055658:CDS | 30.0% | |
| TTAAGATGGTGATTGAAATG+AGG | + | chr1.4:48056161-48056180 | MS.gene055658:CDS | 30.0% | |
| ACATAACGGTTCTTCTTCTT+TGG | + | chr1.4:48056258-48056277 | MS.gene055658:CDS | 35.0% | |
| AGTGTGATTGGGATTACAAA+TGG | + | chr1.4:48056302-48056321 | MS.gene055658:CDS | 35.0% | |
| ATAAAACGCCATCGTTTCAA+TGG | - | chr1.4:48055975-48055994 | None:intergenic | 35.0% | |
| ATAACGGTTCTTCTTCTTTG+GGG | + | chr1.4:48056260-48056279 | MS.gene055658:CDS | 35.0% | |
| CATAACGGTTCTTCTTCTTT+GGG | + | chr1.4:48056259-48056278 | MS.gene055658:CDS | 35.0% | |
| GAACCGTTATGTGATTTCAA+AGG | - | chr1.4:48056250-48056269 | None:intergenic | 35.0% | |
| GAGAAAATTGATGGGGTTTA+TGG | + | chr1.4:48056130-48056149 | MS.gene055658:CDS | 35.0% | |
| GGGATTACAAATGGAGATTA+TGG | + | chr1.4:48056311-48056330 | MS.gene055658:CDS | 35.0% | |
| TAAGGTTCGTTGTGATTTGA+AGG | + | chr1.4:48056222-48056241 | MS.gene055658:CDS | 35.0% | |
| TTCAAATCACAACGAACCTT+AGG | - | chr1.4:48056223-48056242 | None:intergenic | 35.0% | |
| ! | TGAAACGATGGCGTTTTATA+AGG | + | chr1.4:48055976-48055995 | MS.gene055658:CDS | 35.0% |
| ! | TGCATTTTCAACTGCATCTT+AGG | + | chr1.4:48055734-48055753 | MS.gene055658:CDS | 35.0% |
| !! | GTGCCTTTGAAATCACATAA+CGG | + | chr1.4:48056244-48056263 | MS.gene055658:CDS | 35.0% |
| AGTTTGCGAATCAAACCCTA+GGG | + | chr1.4:48056005-48056024 | MS.gene055658:CDS | 40.0% | |
| ATGCTGAAAGAATCTCCCTA+GGG | - | chr1.4:48056023-48056042 | None:intergenic | 40.0% | |
| CTATGACACCATTGAAACGA+TGG | + | chr1.4:48055964-48055983 | MS.gene055658:CDS | 40.0% | |
| TGAAGCTACTGAGTGTGATT+GGG | + | chr1.4:48056291-48056310 | MS.gene055658:CDS | 40.0% | |
| TTGAAGCTACTGAGTGTGAT+TGG | + | chr1.4:48056290-48056309 | MS.gene055658:CDS | 40.0% | |
| ACGGTGAATTTGACGACGTT+AGG | - | chr1.4:48055836-48055855 | None:intergenic | 45.0% | |
| ATGGCCGGAAATCAACTCAA+CGG | + | chr1.4:48055593-48055612 | MS.gene055658:CDS | 45.0% | |
| CAACTCAACGGCGCTTATTA+CGG | + | chr1.4:48055605-48055624 | MS.gene055658:CDS | 45.0% | |
| CAGTTTGCGAATCAAACCCT+AGG | + | chr1.4:48056004-48056023 | MS.gene055658:CDS | 45.0% | |
| CGTAACCCTAATCGAAGAGT+TGG | + | chr1.4:48055935-48055954 | MS.gene055658:CDS | 45.0% | |
| GATGCTGAAAGAATCTCCCT+AGG | - | chr1.4:48056024-48056043 | None:intergenic | 45.0% | |
| CGATCTCGCTCTTAACGTCA+CGG | + | chr1.4:48055910-48055929 | MS.gene055658:CDS | 50.0% | |
| CGTAAGGGTTGCATCGTTGA+CGG | - | chr1.4:48055855-48055874 | None:intergenic | 50.0% | |
| CGTTAAGAGCGAGATCGTAG+TGG | - | chr1.4:48055907-48055926 | None:intergenic | 50.0% | |
| GATTGGGCATGCGAAACCTA+AGG | + | chr1.4:48056204-48056223 | MS.gene055658:CDS | 50.0% | |
| GTCATCATCCTCGTGATCCT+CGG | + | chr1.4:48055785-48055804 | MS.gene055658:CDS | 50.0% | |
| GTCGAACAATGAGCCAGAAG+AGG | - | chr1.4:48055814-48055833 | None:intergenic | 50.0% | |
| TCATCATCCTCGTGATCCTC+GGG | + | chr1.4:48055786-48055805 | MS.gene055658:CDS | 50.0% | |
| ! | CACGAGGATGATGACGATTG+TGG | - | chr1.4:48055780-48055799 | None:intergenic | 50.0% |
| ! | GAGATCGTAGTGGAGTGTGT+TGG | - | chr1.4:48055897-48055916 | None:intergenic | 50.0% |
| !! | AGCGCCGTTGAGTTGATTTC+CGG | - | chr1.4:48055600-48055619 | None:intergenic | 50.0% |
| !! | GGTTCTTCTTCTTTGGGGCA+TGG | + | chr1.4:48056265-48056284 | MS.gene055658:CDS | 50.0% |
| TGATCCTCGGGTTCCTCTTC+TGG | + | chr1.4:48055798-48055817 | MS.gene055658:CDS | 55.0% | |
| AGAGGAACCCGAGGATCACG+AGG | - | chr1.4:48055796-48055815 | None:intergenic | 60.0% | |
| GCGGTGGAGGAGGGATTGAT+GGG | - | chr1.4:48055631-48055650 | None:intergenic | 60.0% | |
| GGCATCTGCAGCTGTCTCTG+CGG | + | chr1.4:48055689-48055708 | MS.gene055658:CDS | 60.0% | |
| TGAGCCAGAAGAGGAACCCG+AGG | - | chr1.4:48055805-48055824 | None:intergenic | 60.0% | |
| TGCGGTGGAGGAGGGATTGA+TGG | - | chr1.4:48055632-48055651 | None:intergenic | 60.0% | |
| TGTCGACGAGGCTTCGGTTG+CGG | - | chr1.4:48055650-48055669 | None:intergenic | 60.0% | |
| !! | TTGCGGTGTCGACGAGGCTT+CGG | - | chr1.4:48055656-48055675 | None:intergenic | 60.0% |
| CACCGCAACGACGACGGTTG+CGG | + | chr1.4:48055668-48055687 | MS.gene055658:CDS | 65.0% | |
| CGTCGACACCGCAACGACGA+CGG | + | chr1.4:48055662-48055681 | MS.gene055658:CDS | 65.0% | |
| GCTTCGGTTGCGGTGGAGGA+GGG | - | chr1.4:48055640-48055659 | None:intergenic | 65.0% | |
| TGCCGCAACCGTCGTCGTTG+CGG | - | chr1.4:48055673-48055692 | None:intergenic | 65.0% | |
| TGTCTCTGCGGCTGCGTTCG+CGG | + | chr1.4:48055701-48055720 | MS.gene055658:CDS | 65.0% | |
| !! | TCGTCGTTGCGGTGTCGACG+AGG | - | chr1.4:48055662-48055681 | None:intergenic | 65.0% |
| CGACGAGGCTTCGGTTGCGG+TGG | - | chr1.4:48055647-48055666 | None:intergenic | 70.0% | |
| CGAGGCTTCGGTTGCGGTGG+AGG | - | chr1.4:48055644-48055663 | None:intergenic | 70.0% | |
| GGCTGCGTTCGCGGCTGTTG+CGG | + | chr1.4:48055710-48055729 | MS.gene055658:CDS | 70.0% | |
| GGCTTCGGTTGCGGTGGAGG+AGG | - | chr1.4:48055641-48055660 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 48055593 | 48056339 | 48055593 | ID=MS.gene055658 |
| chr1.4 | mRNA | 48055593 | 48056339 | 48055593 | ID=MS.gene055658.t1;Parent=MS.gene055658 |
| chr1.4 | exon | 48055593 | 48056339 | 48055593 | ID=MS.gene055658.t1.exon1;Parent=MS.gene055658.t1 |
| chr1.4 | CDS | 48055593 | 48056339 | 48055593 | ID=cds.MS.gene055658.t1;Parent=MS.gene055658.t1 |
| Gene Sequence |
| Protein sequence |
