Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58402.t1 | KEH32283.1 | 91.5 | 247 | 21 | 0 | 2 | 248 | 1 | 247 | 1.80E-108 | 402.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58402.t1 | Q9FNH6 | 52.3 | 239 | 104 | 4 | 3 | 240 | 1 | 230 | 1.4e-43 | 177.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58402.t1 | A0A072UT86 | 91.5 | 247 | 21 | 0 | 2 | 248 | 1 | 247 | 1.3e-108 | 402.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene051327 | MS.gene58402 | PPI |
| MS.gene41069 | MS.gene58402 | PPI |
| MS.gene036507 | MS.gene58402 | PPI |
| MS.gene025640 | MS.gene58402 | PPI |
| MS.gene050363 | MS.gene58402 | PPI |
| MS.gene35049 | MS.gene58402 | PPI |
| MS.gene58402 | MS.gene035313 | PPI |
| MS.gene028407 | MS.gene58402 | PPI |
| MS.gene035313 | MS.gene58402 | PPI |
| MS.gene041542 | MS.gene58402 | PPI |
| MS.gene007146 | MS.gene58402 | PPI |
| MS.gene055658 | MS.gene58402 | PPI |
| MS.gene034789 | MS.gene58402 | PPI |
| MS.gene036506 | MS.gene58402 | PPI |
| MS.gene055657 | MS.gene58402 | PPI |
| MS.gene70399 | MS.gene58402 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58402.t1 | MTR_4g119428 | 94.332 | 247 | 14 | 0 | 2 | 248 | 1 | 247 | 1.53e-165 | 457 |
| MS.gene58402.t1 | MTR_1g057270 | 63.821 | 246 | 86 | 1 | 3 | 245 | 1 | 246 | 2.50e-96 | 282 |
| MS.gene58402.t1 | MTR_7g105870 | 48.333 | 240 | 110 | 4 | 2 | 240 | 1 | 227 | 2.89e-58 | 185 |
| MS.gene58402.t1 | MTR_7g106000 | 37.805 | 246 | 124 | 7 | 3 | 240 | 1 | 225 | 1.39e-53 | 172 |
| MS.gene58402.t1 | MTR_7g106010 | 39.241 | 237 | 123 | 5 | 7 | 238 | 4 | 224 | 5.06e-52 | 169 |
| MS.gene58402.t1 | MTR_7g106030 | 37.054 | 224 | 123 | 5 | 7 | 226 | 7 | 216 | 2.79e-44 | 149 |
| MS.gene58402.t1 | MTR_7g105970 | 37.551 | 245 | 126 | 6 | 3 | 240 | 1 | 225 | 3.60e-43 | 146 |
| MS.gene58402.t1 | MTR_1g057400 | 37.624 | 202 | 115 | 5 | 42 | 238 | 11 | 206 | 3.54e-41 | 140 |
| MS.gene58402.t1 | MTR_6g071410 | 42.029 | 138 | 78 | 2 | 60 | 196 | 15 | 151 | 1.78e-30 | 113 |
| MS.gene58402.t1 | MTR_6g070890 | 42.029 | 138 | 78 | 2 | 60 | 196 | 15 | 151 | 1.78e-30 | 113 |
| MS.gene58402.t1 | MTR_6g471090 | 38.372 | 172 | 85 | 7 | 42 | 208 | 9 | 164 | 2.83e-30 | 112 |
| MS.gene58402.t1 | MTR_6g070900 | 39.735 | 151 | 88 | 3 | 47 | 196 | 3 | 151 | 1.76e-29 | 110 |
| MS.gene58402.t1 | MTR_6g071400 | 39.735 | 151 | 88 | 3 | 47 | 196 | 3 | 151 | 1.76e-29 | 110 |
| MS.gene58402.t1 | MTR_1g057290 | 37.952 | 166 | 97 | 3 | 80 | 240 | 52 | 216 | 6.17e-25 | 98.6 |
| MS.gene58402.t1 | MTR_6g471080 | 42.254 | 142 | 79 | 3 | 56 | 196 | 7 | 146 | 9.18e-24 | 95.5 |
| MS.gene58402.t1 | MTR_2g048270 | 41.060 | 151 | 76 | 5 | 94 | 238 | 2 | 145 | 1.00e-22 | 91.7 |
| MS.gene58402.t1 | MTR_2g011350 | 31.884 | 138 | 93 | 1 | 67 | 204 | 35 | 171 | 9.31e-21 | 87.0 |
| MS.gene58402.t1 | MTR_4g094322 | 55.072 | 69 | 30 | 1 | 179 | 246 | 2 | 70 | 4.34e-20 | 81.6 |
| MS.gene58402.t1 | MTR_3g078800 | 31.677 | 161 | 107 | 3 | 59 | 217 | 73 | 232 | 1.18e-18 | 82.8 |
| MS.gene58402.t1 | MTR_2g086790 | 25.628 | 199 | 132 | 4 | 55 | 238 | 15 | 212 | 4.05e-17 | 77.8 |
| MS.gene58402.t1 | MTR_1g057230 | 55.882 | 68 | 28 | 2 | 181 | 248 | 31 | 96 | 3.21e-16 | 72.4 |
| MS.gene58402.t1 | MTR_5g087760 | 28.177 | 181 | 112 | 5 | 44 | 217 | 65 | 234 | 9.86e-16 | 74.7 |
| MS.gene58402.t1 | MTR_3g063310 | 33.333 | 153 | 91 | 4 | 70 | 217 | 84 | 230 | 2.05e-15 | 73.9 |
| MS.gene58402.t1 | MTR_7g118270 | 29.560 | 159 | 108 | 3 | 64 | 220 | 54 | 210 | 4.06e-15 | 72.4 |
| MS.gene58402.t1 | MTR_5g076170 | 32.973 | 185 | 117 | 6 | 42 | 224 | 70 | 249 | 4.35e-14 | 70.1 |
| MS.gene58402.t1 | MTR_1g105570 | 24.268 | 239 | 158 | 8 | 6 | 240 | 10 | 229 | 7.02e-14 | 69.3 |
| MS.gene58402.t1 | MTR_1g057420 | 26.923 | 156 | 112 | 2 | 75 | 229 | 39 | 193 | 3.37e-13 | 67.0 |
| MS.gene58402.t1 | MTR_4g051880 | 30.657 | 137 | 85 | 3 | 78 | 205 | 43 | 178 | 3.99e-13 | 67.0 |
| MS.gene58402.t1 | MTR_1g057300 | 41.000 | 100 | 52 | 3 | 42 | 141 | 12 | 104 | 6.65e-13 | 64.3 |
| MS.gene58402.t1 | MTR_2g100060 | 27.174 | 184 | 121 | 6 | 69 | 245 | 78 | 255 | 7.19e-13 | 66.6 |
| MS.gene58402.t1 | MTR_6g453010 | 30.675 | 163 | 99 | 4 | 63 | 213 | 18 | 178 | 1.07e-12 | 65.1 |
| MS.gene58402.t1 | MTR_3g078820 | 28.966 | 145 | 100 | 3 | 74 | 217 | 44 | 186 | 4.53e-12 | 63.9 |
| MS.gene58402.t1 | MTR_7g106050 | 23.563 | 174 | 129 | 3 | 59 | 231 | 25 | 195 | 1.49e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58402.t1 | AT3G11650 | 44.017 | 234 | 127 | 3 | 8 | 240 | 8 | 238 | 3.65e-65 | 202 |
| MS.gene58402.t1 | AT5G06320 | 45.607 | 239 | 120 | 4 | 3 | 240 | 1 | 230 | 2.30e-60 | 190 |
| MS.gene58402.t1 | AT2G35980 | 40.984 | 244 | 121 | 6 | 2 | 240 | 1 | 226 | 2.52e-57 | 182 |
| MS.gene58402.t1 | AT2G35460 | 35.124 | 242 | 139 | 5 | 8 | 240 | 5 | 237 | 7.36e-54 | 174 |
| MS.gene58402.t1 | AT1G32270 | 33.766 | 154 | 102 | 0 | 77 | 230 | 1 | 154 | 4.03e-24 | 99.0 |
| MS.gene58402.t1 | AT1G32270 | 33.766 | 154 | 102 | 0 | 77 | 230 | 1 | 154 | 9.30e-24 | 99.0 |
| MS.gene58402.t1 | AT5G22870 | 32.778 | 180 | 112 | 5 | 54 | 225 | 24 | 202 | 1.42e-20 | 87.0 |
| MS.gene58402.t1 | AT2G27080 | 28.889 | 180 | 116 | 4 | 42 | 217 | 68 | 239 | 1.47e-18 | 82.8 |
| MS.gene58402.t1 | AT2G27080 | 28.889 | 180 | 116 | 4 | 42 | 217 | 68 | 239 | 1.47e-18 | 82.8 |
| MS.gene58402.t1 | AT5G53730 | 29.070 | 172 | 117 | 4 | 69 | 237 | 40 | 209 | 1.91e-18 | 81.3 |
| MS.gene58402.t1 | AT4G01410 | 28.571 | 161 | 113 | 2 | 56 | 215 | 44 | 203 | 5.51e-18 | 80.5 |
| MS.gene58402.t1 | AT4G09590 | 27.500 | 160 | 114 | 2 | 56 | 214 | 22 | 180 | 3.20e-17 | 78.2 |
| MS.gene58402.t1 | AT4G05220 | 25.123 | 203 | 136 | 5 | 19 | 217 | 16 | 206 | 5.98e-17 | 77.4 |
| MS.gene58402.t1 | AT3G52470 | 24.176 | 182 | 136 | 2 | 50 | 230 | 13 | 193 | 6.14e-17 | 77.0 |
| MS.gene58402.t1 | AT2G35970 | 26.875 | 160 | 115 | 2 | 56 | 214 | 22 | 180 | 2.79e-15 | 72.8 |
| MS.gene58402.t1 | AT3G44220 | 24.615 | 195 | 140 | 4 | 48 | 240 | 16 | 205 | 3.44e-15 | 72.4 |
| MS.gene58402.t1 | AT3G11660 | 27.624 | 181 | 120 | 5 | 55 | 229 | 14 | 189 | 8.39e-15 | 71.2 |
| MS.gene58402.t1 | AT1G61760 | 23.881 | 201 | 142 | 4 | 18 | 217 | 14 | 204 | 8.82e-15 | 71.6 |
| MS.gene58402.t1 | AT2G35960 | 23.899 | 159 | 119 | 2 | 72 | 229 | 37 | 194 | 6.93e-13 | 66.2 |
| MS.gene58402.t1 | AT5G36970 | 27.128 | 188 | 115 | 7 | 19 | 203 | 44 | 212 | 5.79e-12 | 64.3 |
| MS.gene58402.t1 | AT5G22200 | 24.286 | 140 | 104 | 2 | 75 | 213 | 43 | 181 | 1.01e-11 | 62.8 |
Find 62 sgRNAs with CRISPR-Local
Find 67 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAATCGTTGGTTTCCTCTTC+TGG | 0.159458 | 8.1:-8724072 | MS.gene58402:CDS |
| AAACAATGGAACTTCTTCTT+TGG | 0.219254 | 8.1:-8723612 | MS.gene58402:CDS |
| GAGACGAACAATGGGGTTTA+TGG | 0.230591 | 8.1:-8723740 | MS.gene58402:CDS |
| TAGACACCAACTCTTCTATT+AGG | 0.243076 | 8.1:+8723929 | None:intergenic |
| TGGCTATGATTCTGCAAATT+AGG | 0.245341 | 8.1:+8724113 | None:intergenic |
| ATGGCCGATCATCAACTTAA+TGG | 0.310146 | 8.1:-8724268 | MS.gene58402:CDS |
| TTTGAGTTCAAGTCAGATTT+CGG | 0.321473 | 8.1:-8723774 | MS.gene58402:CDS |
| AACAATGGAACTTCTTCTTT+GGG | 0.334017 | 8.1:-8723611 | MS.gene58402:CDS |
| TTTCGTTCTACAAAGATGTT+AGG | 0.352398 | 8.1:-8723886 | MS.gene58402:CDS |
| AGACACCAACTCTTCTATTA+GGG | 0.354262 | 8.1:+8723930 | None:intergenic |
| TCAGATTTCGGAGTTCAATA+AGG | 0.356102 | 8.1:-8723762 | MS.gene58402:CDS |
| GCTTAATGTTAGGTTTGCCT+TGG | 0.360646 | 8.1:-8723699 | MS.gene58402:CDS |
| AAACCATCATTGTGATTTGA+AGG | 0.371474 | 8.1:-8723648 | MS.gene58402:CDS |
| CAACTTAATGGCGCTCACTA+TGG | 0.374702 | 8.1:-8724256 | MS.gene58402:CDS |
| AAAATGCTTGTATTCTTATG+AGG | 0.386830 | 8.1:+8723830 | None:intergenic |
| CTTAATGTTAGGTTTGCCTT+GGG | 0.387185 | 8.1:-8723698 | MS.gene58402:CDS |
| TTCTACAAAGATGTTAGGTT+TGG | 0.411421 | 8.1:-8723881 | MS.gene58402:CDS |
| GGTCTCGTTGGTGGGATGGA+AGG | 0.412273 | 8.1:+8724232 | None:intergenic |
| TTCAAGCCACTCGTTGTGAA+TGG | 0.419817 | 8.1:-8723580 | MS.gene58402:CDS |
| GGCTTCTGCAGTTGCATCTT+CGG | 0.421562 | 8.1:-8724181 | MS.gene58402:CDS |
| ACGGAACAACAACCTCCATT+TGG | 0.427174 | 8.1:+8723553 | None:intergenic |
| GCCTTGGGTTTGATCAAGAC+AGG | 0.435553 | 8.1:-8723683 | MS.gene58402:CDS |
| GTCTCGTTGGTGGGATGGAA+GGG | 0.452448 | 8.1:+8724233 | None:intergenic |
| TGGTGGTCTCGTTGGTGGGA+TGG | 0.462701 | 8.1:+8724228 | None:intergenic |
| CGCCTTGGTGGTCTCGTTGG+TGG | 0.462770 | 8.1:+8724223 | None:intergenic |
| TCAAGCCACTCGTTGTGAAT+GGG | 0.463646 | 8.1:-8723579 | MS.gene58402:CDS |
| GAACCTTCAAATCACAATGA+TGG | 0.467040 | 8.1:+8723645 | None:intergenic |
| CGCTCTCAAGTTCACCGTTA+CGG | 0.467483 | 8.1:-8724032 | MS.gene58402:CDS |
| CCGGCATTGTGGCGTCGCCT+TGG | 0.473024 | 8.1:+8724208 | None:intergenic |
| CGACGCCACAATGCCGGCTG+TGG | 0.473989 | 8.1:-8724202 | MS.gene58402:CDS |
| TCAATAAGGAGACGAACAAT+GGG | 0.474447 | 8.1:-8723748 | MS.gene58402:CDS |
| GTTCCATTGTTTGATTTCAA+AGG | 0.475107 | 8.1:+8723623 | None:intergenic |
| ATCTTCTCCACAGGAAATGA+TGG | 0.476522 | 8.1:-8724287 | None:intergenic |
| CATAGCCACTATCATCATCT+TGG | 0.479266 | 8.1:-8724098 | MS.gene58402:CDS |
| GGTTTATGGAATTAATTTGA+AGG | 0.491580 | 8.1:-8723726 | MS.gene58402:CDS |
| CCAAGGCGACGCCACAATGC+CGG | 0.500601 | 8.1:-8724208 | MS.gene58402:CDS |
| GCATTGTGGCGTCGCCTTGG+TGG | 0.501481 | 8.1:+8724211 | None:intergenic |
| ATCATCTTGGTGGCAATCGT+TGG | 0.506170 | 8.1:-8724085 | MS.gene58402:CDS |
| AGGTTTGGTTCTCAAACCCT+AGG | 0.507299 | 8.1:-8723866 | MS.gene58402:CDS |
| ACGGTGAACTTGAGAGCGTT+AGG | 0.511266 | 8.1:+8724037 | None:intergenic |
| GCCTTGGTGGTCTCGTTGGT+GGG | 0.515070 | 8.1:+8724224 | None:intergenic |
| GTTGTGAATGGGATTCCAAA+TGG | 0.520609 | 8.1:-8723568 | MS.gene58402:CDS |
| GCAACTGCAGAAGCCACAGC+CGG | 0.529666 | 8.1:+8724189 | None:intergenic |
| TTCAATAAGGAGACGAACAA+TGG | 0.532039 | 8.1:-8723749 | MS.gene58402:CDS |
| AGAAACCCTAATAGAAGAGT+TGG | 0.542018 | 8.1:-8723935 | MS.gene58402:CDS |
| GGAATCCCATTCACAACGAG+TGG | 0.551540 | 8.1:+8723574 | None:intergenic |
| CCTTGGGTTTGATCAAGACA+GGG | 0.553635 | 8.1:-8723682 | MS.gene58402:CDS |
| CGTCGCCTTGGTGGTCTCGT+TGG | 0.559136 | 8.1:+8724220 | None:intergenic |
| TGCCACCAAGATGATGATAG+TGG | 0.568500 | 8.1:+8724093 | None:intergenic |
| GGCTGCTTTAGAAGCTGTTG+CGG | 0.570457 | 8.1:-8724160 | MS.gene58402:CDS |
| AGCGCCATTAAGTTGATGAT+CGG | 0.582874 | 8.1:+8724264 | None:intergenic |
| AGCCACTATCATCATCTTGG+TGG | 0.583458 | 8.1:-8724095 | MS.gene58402:CDS |
| CCCTGTCTTGATCAAACCCA+AGG | 0.584419 | 8.1:+8723682 | None:intergenic |
| GAAATCTGACTTGAACTCAA+AGG | 0.585603 | 8.1:+8723776 | None:intergenic |
| AGCAAGTGATGCCTCCGTAA+CGG | 0.610765 | 8.1:+8724018 | None:intergenic |
| GTTCCTTTGAAATCAAACAA+TGG | 0.618380 | 8.1:-8723626 | MS.gene58402:CDS |
| AGAAGCCACAGCCGGCATTG+TGG | 0.624953 | 8.1:+8724197 | None:intergenic |
| GACGCACGATAAGCCAGAAG+AGG | 0.641544 | 8.1:+8724059 | None:intergenic |
| TCTCAAGTTCACCGTTACGG+AGG | 0.686548 | 8.1:-8724029 | MS.gene58402:CDS |
| TCCCACCAACGAGACCACCA+AGG | 0.699917 | 8.1:-8724225 | MS.gene58402:CDS |
| GTGAATGGGATTCCAAATGG+AGG | 0.700064 | 8.1:-8723565 | MS.gene58402:CDS |
| CAATAAGGAGACGAACAATG+GGG | 0.723520 | 8.1:-8723747 | MS.gene58402:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTGAATCCTGTTTTTAA+AGG | - | chr8.1:8724012-8724031 | MS.gene58402:CDS | 20.0% |
| ! | AAAATGCTTGTATTCTTATG+AGG | + | chr8.1:8723997-8724016 | None:intergenic | 25.0% |
| !! | GGTTTATGGAATTAATTTGA+AGG | - | chr8.1:8724098-8724117 | MS.gene58402:CDS | 25.0% |
| AAACAATGGAACTTCTTCTT+TGG | - | chr8.1:8724212-8724231 | MS.gene58402:CDS | 30.0% | |
| AAACCATCATTGTGATTTGA+AGG | - | chr8.1:8724176-8724195 | MS.gene58402:CDS | 30.0% | |
| AACAATGGAACTTCTTCTTT+GGG | - | chr8.1:8724213-8724232 | MS.gene58402:CDS | 30.0% | |
| TTCTACAAAGATGTTAGGTT+TGG | - | chr8.1:8723943-8723962 | MS.gene58402:CDS | 30.0% | |
| TTTCGTTCTACAAAGATGTT+AGG | - | chr8.1:8723938-8723957 | MS.gene58402:CDS | 30.0% | |
| ! | AGGTTGAAAGAATTTTCCTA+GGG | + | chr8.1:8723977-8723996 | None:intergenic | 30.0% |
| ! | GTTCCATTGTTTGATTTCAA+AGG | + | chr8.1:8724204-8724223 | None:intergenic | 30.0% |
| ! | TGAAGGTTTTGCTTAATGTT+AGG | - | chr8.1:8724115-8724134 | MS.gene58402:CDS | 30.0% |
| ! | TTTGAGTTCAAGTCAGATTT+CGG | - | chr8.1:8724050-8724069 | MS.gene58402:CDS | 30.0% |
| !! | ACTTGTTGTCCTTTAAAAAC+AGG | + | chr8.1:8724024-8724043 | None:intergenic | 30.0% |
| !! | GTTCCTTTGAAATCAAACAA+TGG | - | chr8.1:8724198-8724217 | MS.gene58402:CDS | 30.0% |
| AGAAACCCTAATAGAAGAGT+TGG | - | chr8.1:8723889-8723908 | MS.gene58402:CDS | 35.0% | |
| AGACACCAACTCTTCTATTA+GGG | + | chr8.1:8723897-8723916 | None:intergenic | 35.0% | |
| CTTAATGTTAGGTTTGCCTT+GGG | - | chr8.1:8724126-8724145 | MS.gene58402:CDS | 35.0% | |
| GAACCTTCAAATCACAATGA+TGG | + | chr8.1:8724182-8724201 | None:intergenic | 35.0% | |
| TAGACACCAACTCTTCTATT+AGG | + | chr8.1:8723898-8723917 | None:intergenic | 35.0% | |
| TCAATAAGGAGACGAACAAT+GGG | - | chr8.1:8724076-8724095 | MS.gene58402:CDS | 35.0% | |
| TCAGATTTCGGAGTTCAATA+AGG | - | chr8.1:8724062-8724081 | MS.gene58402:CDS | 35.0% | |
| TGGCTATGATTCTGCAAATT+AGG | + | chr8.1:8723714-8723733 | None:intergenic | 35.0% | |
| TTCAATAAGGAGACGAACAA+TGG | - | chr8.1:8724075-8724094 | MS.gene58402:CDS | 35.0% | |
| ! | GAAATCTGACTTGAACTCAA+AGG | + | chr8.1:8724051-8724070 | None:intergenic | 35.0% |
| ! | GAGGTTGAAAGAATTTTCCT+AGG | + | chr8.1:8723978-8723997 | None:intergenic | 35.0% |
| ATGGCCGATCATCAACTTAA+TGG | - | chr8.1:8723556-8723575 | MS.gene58402:CDS | 40.0% | |
| CAATAAGGAGACGAACAATG+GGG | - | chr8.1:8724077-8724096 | MS.gene58402:CDS | 40.0% | |
| CATAGCCACTATCATCATCT+TGG | - | chr8.1:8723726-8723745 | MS.gene58402:CDS | 40.0% | |
| GCTTAATGTTAGGTTTGCCT+TGG | - | chr8.1:8724125-8724144 | MS.gene58402:CDS | 40.0% | |
| GTTGTGAATGGGATTCCAAA+TGG | - | chr8.1:8724256-8724275 | MS.gene58402:CDS | 40.0% | |
| !! | AGCGCCATTAAGTTGATGAT+CGG | + | chr8.1:8723563-8723582 | None:intergenic | 40.0% |
| ACGGAACAACAACCTCCATT+TGG | + | chr8.1:8724274-8724293 | None:intergenic | 45.0% | |
| AGCCACTATCATCATCTTGG+TGG | - | chr8.1:8723729-8723748 | MS.gene58402:CDS | 45.0% | |
| CAACTTAATGGCGCTCACTA+TGG | - | chr8.1:8723568-8723587 | MS.gene58402:CDS | 45.0% | |
| CCTTGGGTTTGATCAAGACA+GGG | - | chr8.1:8724142-8724161 | MS.gene58402:CDS | 45.0% | |
| GAGACGAACAATGGGGTTTA+TGG | - | chr8.1:8724084-8724103 | MS.gene58402:CDS | 45.0% | |
| GTGAATGGGATTCCAAATGG+AGG | - | chr8.1:8724259-8724278 | MS.gene58402:CDS | 45.0% | |
| TCAAGCCACTCGTTGTGAAT+GGG | - | chr8.1:8724245-8724264 | MS.gene58402:CDS | 45.0% | |
| TGCCACCAAGATGATGATAG+TGG | + | chr8.1:8723734-8723753 | None:intergenic | 45.0% | |
| TTCAAGCCACTCGTTGTGAA+TGG | - | chr8.1:8724244-8724263 | MS.gene58402:CDS | 45.0% | |
| ! | ATCATCTTGGTGGCAATCGT+TGG | - | chr8.1:8723739-8723758 | MS.gene58402:CDS | 45.0% |
| ! | ATGGAGGTTGTTGTTCCGTT+AGG | - | chr8.1:8724275-8724294 | MS.gene58402:CDS | 45.0% |
| !! | AGGTTTGGTTCTCAAACCCT+AGG | - | chr8.1:8723958-8723977 | MS.gene58402:CDS | 45.0% |
| !! | CAATCGTTGGTTTCCTCTTC+TGG | - | chr8.1:8723752-8723771 | MS.gene58402:CDS | 45.0% |
| AGCAAGTGATGCCTCCGTAA+CGG | + | chr8.1:8723809-8723828 | None:intergenic | 50.0% | |
| CCCTGTCTTGATCAAACCCA+AGG | + | chr8.1:8724145-8724164 | None:intergenic | 50.0% | |
| CGCTCTCAAGTTCACCGTTA+CGG | - | chr8.1:8723792-8723811 | MS.gene58402:CDS | 50.0% | |
| GCCTTGGGTTTGATCAAGAC+AGG | - | chr8.1:8724141-8724160 | MS.gene58402:CDS | 50.0% | |
| GGAATCCCATTCACAACGAG+TGG | + | chr8.1:8724253-8724272 | None:intergenic | 50.0% | |
| GGCTTCTGCAGTTGCATCTT+CGG | - | chr8.1:8723643-8723662 | MS.gene58402:CDS | 50.0% | |
| TCTCAAGTTCACCGTTACGG+AGG | - | chr8.1:8723795-8723814 | MS.gene58402:CDS | 50.0% | |
| !! | ACGGTGAACTTGAGAGCGTT+AGG | + | chr8.1:8723790-8723809 | None:intergenic | 50.0% |
| !! | GGCTGCTTTAGAAGCTGTTG+CGG | - | chr8.1:8723664-8723683 | MS.gene58402:CDS | 50.0% |
| GACGCACGATAAGCCAGAAG+AGG | + | chr8.1:8723768-8723787 | None:intergenic | 55.0% | |
| ! | GTCTCGTTGGTGGGATGGAA+GGG | + | chr8.1:8723594-8723613 | None:intergenic | 55.0% |
| AGAAGCCACAGCCGGCATTG+TGG | + | chr8.1:8723630-8723649 | None:intergenic | 60.0% | |
| GCAACTGCAGAAGCCACAGC+CGG | + | chr8.1:8723638-8723657 | None:intergenic | 60.0% | |
| TCCCACCAACGAGACCACCA+AGG | - | chr8.1:8723599-8723618 | MS.gene58402:CDS | 60.0% | |
| ! | GCCTTGGTGGTCTCGTTGGT+GGG | + | chr8.1:8723603-8723622 | None:intergenic | 60.0% |
| ! | GGTCTCGTTGGTGGGATGGA+AGG | + | chr8.1:8723595-8723614 | None:intergenic | 60.0% |
| ! | TGGTGGTCTCGTTGGTGGGA+TGG | + | chr8.1:8723599-8723618 | None:intergenic | 60.0% |
| CCAAGGCGACGCCACAATGC+CGG | - | chr8.1:8723616-8723635 | MS.gene58402:CDS | 65.0% | |
| GCATTGTGGCGTCGCCTTGG+TGG | + | chr8.1:8723616-8723635 | None:intergenic | 65.0% | |
| ! | CGCCTTGGTGGTCTCGTTGG+TGG | + | chr8.1:8723604-8723623 | None:intergenic | 65.0% |
| ! | CGTCGCCTTGGTGGTCTCGT+TGG | + | chr8.1:8723607-8723626 | None:intergenic | 65.0% |
| CCGGCATTGTGGCGTCGCCT+TGG | + | chr8.1:8723619-8723638 | None:intergenic | 70.0% | |
| ! | CGACGCCACAATGCCGGCTG+TGG | - | chr8.1:8723622-8723641 | MS.gene58402:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 8723550 | 8724296 | 8723550 | ID=MS.gene58402 |
| chr8.1 | mRNA | 8723550 | 8724296 | 8723550 | ID=MS.gene58402.t1;Parent=MS.gene58402 |
| chr8.1 | exon | 8723550 | 8724296 | 8723550 | ID=MS.gene58402.t1.exon1;Parent=MS.gene58402.t1 |
| chr8.1 | CDS | 8723550 | 8724296 | 8723550 | ID=cds.MS.gene58402.t1;Parent=MS.gene58402.t1 |
| Gene Sequence |
| Protein sequence |
