Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene035313.t1 | KEH32283.1 | 91.5 | 246 | 21 | 0 | 1 | 246 | 2 | 247 | 3.10E-108 | 401.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene035313.t1 | Q9FNH6 | 51.9 | 239 | 105 | 4 | 1 | 238 | 1 | 230 | 6.7e-43 | 175.6 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene035313.t1 | A0A072UT86 | 91.5 | 246 | 21 | 0 | 1 | 246 | 2 | 247 | 2.2e-108 | 401.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene041542 | MS.gene035313 | PPI |
MS.gene007146 | MS.gene035313 | PPI |
MS.gene055658 | MS.gene035313 | PPI |
MS.gene034789 | MS.gene035313 | PPI |
MS.gene055657 | MS.gene035313 | PPI |
MS.gene70399 | MS.gene035313 | PPI |
MS.gene58402 | MS.gene035313 | PPI |
MS.gene036506 | MS.gene035313 | PPI |
MS.gene035313 | MS.gene58402 | PPI |
MS.gene051327 | MS.gene035313 | PPI |
MS.gene41069 | MS.gene035313 | PPI |
MS.gene036507 | MS.gene035313 | PPI |
MS.gene025640 | MS.gene035313 | PPI |
MS.gene050363 | MS.gene035313 | PPI |
MS.gene35049 | MS.gene035313 | PPI |
MS.gene028407 | MS.gene035313 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene035313.t1 | MTR_4g119428 | 94.309 | 246 | 14 | 0 | 1 | 246 | 2 | 247 | 4.56e-165 | 456 |
MS.gene035313.t1 | MTR_1g057270 | 63.821 | 246 | 86 | 1 | 1 | 243 | 1 | 246 | 1.45e-95 | 280 |
MS.gene035313.t1 | MTR_7g105870 | 48.305 | 236 | 108 | 4 | 4 | 238 | 5 | 227 | 3.46e-57 | 182 |
MS.gene035313.t1 | MTR_7g106000 | 37.143 | 245 | 127 | 6 | 1 | 238 | 1 | 225 | 4.01e-53 | 171 |
MS.gene035313.t1 | MTR_7g106010 | 38.912 | 239 | 125 | 5 | 5 | 238 | 4 | 226 | 6.91e-52 | 168 |
MS.gene035313.t1 | MTR_7g106030 | 37.054 | 224 | 123 | 5 | 5 | 224 | 7 | 216 | 3.82e-44 | 149 |
MS.gene035313.t1 | MTR_7g105970 | 37.551 | 245 | 126 | 6 | 1 | 238 | 1 | 225 | 5.04e-43 | 145 |
MS.gene035313.t1 | MTR_1g057400 | 36.634 | 202 | 117 | 5 | 40 | 236 | 11 | 206 | 3.63e-40 | 137 |
MS.gene035313.t1 | MTR_6g071410 | 42.029 | 138 | 78 | 2 | 58 | 194 | 15 | 151 | 2.11e-30 | 112 |
MS.gene035313.t1 | MTR_6g070890 | 42.029 | 138 | 78 | 2 | 58 | 194 | 15 | 151 | 2.11e-30 | 112 |
MS.gene035313.t1 | MTR_6g471090 | 38.372 | 172 | 85 | 7 | 40 | 206 | 9 | 164 | 3.35e-30 | 112 |
MS.gene035313.t1 | MTR_6g070900 | 39.735 | 151 | 88 | 3 | 45 | 194 | 3 | 151 | 1.62e-29 | 110 |
MS.gene035313.t1 | MTR_6g071400 | 39.735 | 151 | 88 | 3 | 45 | 194 | 3 | 151 | 1.62e-29 | 110 |
MS.gene035313.t1 | MTR_1g057290 | 37.952 | 166 | 97 | 3 | 78 | 238 | 52 | 216 | 1.42e-24 | 97.8 |
MS.gene035313.t1 | MTR_6g471080 | 42.254 | 142 | 79 | 3 | 54 | 194 | 7 | 146 | 1.33e-23 | 95.1 |
MS.gene035313.t1 | MTR_2g048270 | 41.060 | 151 | 76 | 5 | 92 | 236 | 2 | 145 | 1.63e-22 | 90.9 |
MS.gene035313.t1 | MTR_2g011350 | 32.609 | 138 | 92 | 1 | 65 | 202 | 35 | 171 | 3.21e-21 | 88.6 |
MS.gene035313.t1 | MTR_4g094322 | 56.522 | 69 | 29 | 1 | 177 | 244 | 2 | 70 | 6.33e-21 | 84.0 |
MS.gene035313.t1 | MTR_3g078800 | 31.677 | 161 | 107 | 3 | 57 | 215 | 73 | 232 | 1.35e-18 | 82.8 |
MS.gene035313.t1 | MTR_2g086790 | 25.628 | 199 | 132 | 4 | 53 | 236 | 15 | 212 | 3.67e-17 | 77.8 |
MS.gene035313.t1 | MTR_1g057230 | 55.882 | 68 | 28 | 2 | 179 | 246 | 31 | 96 | 6.36e-16 | 71.2 |
MS.gene035313.t1 | MTR_5g087760 | 28.177 | 181 | 112 | 5 | 42 | 215 | 65 | 234 | 1.18e-15 | 74.3 |
MS.gene035313.t1 | MTR_3g063310 | 33.333 | 153 | 91 | 4 | 68 | 215 | 84 | 230 | 3.39e-15 | 73.2 |
MS.gene035313.t1 | MTR_7g118270 | 29.560 | 159 | 108 | 3 | 62 | 218 | 54 | 210 | 4.12e-15 | 72.4 |
MS.gene035313.t1 | MTR_5g076170 | 32.973 | 185 | 117 | 6 | 40 | 222 | 70 | 249 | 6.49e-14 | 69.7 |
MS.gene035313.t1 | MTR_1g057420 | 26.923 | 156 | 112 | 2 | 73 | 227 | 39 | 193 | 2.30e-13 | 67.4 |
MS.gene035313.t1 | MTR_4g051880 | 30.657 | 137 | 85 | 3 | 76 | 203 | 43 | 178 | 3.01e-13 | 67.0 |
MS.gene035313.t1 | MTR_1g105570 | 23.849 | 239 | 159 | 8 | 4 | 238 | 10 | 229 | 4.09e-13 | 67.0 |
MS.gene035313.t1 | MTR_2g100060 | 27.174 | 184 | 121 | 6 | 67 | 243 | 78 | 255 | 1.25e-12 | 66.2 |
MS.gene035313.t1 | MTR_6g453010 | 30.675 | 163 | 99 | 4 | 61 | 211 | 18 | 178 | 1.43e-12 | 64.7 |
MS.gene035313.t1 | MTR_1g057300 | 40.000 | 100 | 53 | 3 | 40 | 139 | 12 | 104 | 1.67e-12 | 63.2 |
MS.gene035313.t1 | MTR_3g078820 | 28.966 | 145 | 100 | 3 | 72 | 215 | 44 | 186 | 5.47e-12 | 63.5 |
MS.gene035313.t1 | MTR_7g106050 | 25.503 | 149 | 107 | 3 | 57 | 204 | 25 | 170 | 2.15e-11 | 62.0 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene035313.t1 | AT3G11650 | 43.590 | 234 | 128 | 3 | 6 | 238 | 8 | 238 | 1.37e-64 | 201 |
MS.gene035313.t1 | AT5G06320 | 45.607 | 239 | 120 | 4 | 1 | 238 | 1 | 230 | 2.15e-59 | 187 |
MS.gene035313.t1 | AT2G35980 | 41.322 | 242 | 119 | 6 | 2 | 238 | 3 | 226 | 1.87e-56 | 180 |
MS.gene035313.t1 | AT2G35460 | 35.124 | 242 | 139 | 5 | 6 | 238 | 5 | 237 | 1.45e-53 | 173 |
MS.gene035313.t1 | AT1G32270 | 33.766 | 154 | 102 | 0 | 75 | 228 | 1 | 154 | 7.29e-24 | 98.2 |
MS.gene035313.t1 | AT1G32270 | 33.766 | 154 | 102 | 0 | 75 | 228 | 1 | 154 | 1.66e-23 | 98.2 |
MS.gene035313.t1 | AT5G22870 | 32.778 | 180 | 112 | 5 | 52 | 223 | 24 | 202 | 1.29e-20 | 87.0 |
MS.gene035313.t1 | AT2G27080 | 28.889 | 180 | 116 | 4 | 40 | 215 | 68 | 239 | 1.78e-18 | 82.4 |
MS.gene035313.t1 | AT2G27080 | 28.889 | 180 | 116 | 4 | 40 | 215 | 68 | 239 | 1.78e-18 | 82.4 |
MS.gene035313.t1 | AT4G01410 | 28.571 | 161 | 113 | 2 | 54 | 213 | 44 | 203 | 5.24e-18 | 80.5 |
MS.gene035313.t1 | AT5G53730 | 28.488 | 172 | 118 | 4 | 67 | 235 | 40 | 209 | 5.70e-18 | 80.1 |
MS.gene035313.t1 | AT4G05220 | 25.123 | 203 | 136 | 5 | 17 | 215 | 16 | 206 | 3.67e-17 | 78.2 |
MS.gene035313.t1 | AT3G52470 | 24.176 | 182 | 136 | 2 | 48 | 228 | 13 | 193 | 4.26e-17 | 77.4 |
MS.gene035313.t1 | AT4G09590 | 27.500 | 160 | 114 | 2 | 54 | 212 | 22 | 180 | 4.99e-17 | 77.4 |
MS.gene035313.t1 | AT3G44220 | 24.615 | 195 | 140 | 4 | 46 | 238 | 16 | 205 | 3.32e-15 | 72.4 |
MS.gene035313.t1 | AT2G35970 | 26.875 | 160 | 115 | 2 | 54 | 212 | 22 | 180 | 3.96e-15 | 72.4 |
MS.gene035313.t1 | AT3G11660 | 28.022 | 182 | 118 | 6 | 53 | 227 | 14 | 189 | 6.90e-15 | 71.6 |
MS.gene035313.t1 | AT1G61760 | 23.383 | 201 | 143 | 4 | 16 | 215 | 14 | 204 | 1.56e-14 | 70.9 |
MS.gene035313.t1 | AT2G35960 | 23.899 | 159 | 119 | 2 | 70 | 227 | 37 | 194 | 5.61e-13 | 66.2 |
MS.gene035313.t1 | AT5G36970 | 27.128 | 188 | 115 | 7 | 17 | 201 | 44 | 212 | 7.18e-12 | 63.9 |
MS.gene035313.t1 | AT5G22200 | 24.286 | 140 | 104 | 2 | 73 | 211 | 43 | 181 | 1.40e-11 | 62.4 |
Find 62 sgRNAs with CRISPR-Local
Find 67 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CAATCGTTGGTTTCCTCTTC+TGG | 0.159458 | 8.3:-7468379 | MS.gene035313:CDS |
AAACAATGGAACTTCTTCTT+TGG | 0.219254 | 8.3:-7467919 | MS.gene035313:CDS |
GAGACGAACAATGGGGTTTA+TGG | 0.230591 | 8.3:-7468047 | MS.gene035313:CDS |
TAGACACCAACTCTTCTATT+AGG | 0.243076 | 8.3:+7468236 | None:intergenic |
TGGCTATGATTCTGCAAATT+AGG | 0.245341 | 8.3:+7468420 | None:intergenic |
ATGGCCGATCATCAACTTAA+TGG | 0.310146 | 8.3:-7468575 | MS.gene035313:CDS |
GAACTTCTTCTTTGGGTAAT+GGG | 0.320646 | 8.3:-7467911 | MS.gene035313:CDS |
TTTGAGTTCAAGTCAGATTT+CGG | 0.321473 | 8.3:-7468081 | MS.gene035313:CDS |
AACAATGGAACTTCTTCTTT+GGG | 0.334017 | 8.3:-7467918 | MS.gene035313:CDS |
TTTCGTTCTACAAAGATGTT+AGG | 0.352398 | 8.3:-7468193 | MS.gene035313:CDS |
AGACACCAACTCTTCTATTA+GGG | 0.354262 | 8.3:+7468237 | None:intergenic |
TCAGATTTCGGAGTTCAATA+AGG | 0.356102 | 8.3:-7468069 | MS.gene035313:CDS |
GCTTAATGTTAGGTTTGCCT+TGG | 0.360646 | 8.3:-7468006 | MS.gene035313:CDS |
GGAACTTCTTCTTTGGGTAA+TGG | 0.366168 | 8.3:-7467912 | MS.gene035313:CDS |
AAACCATCATTGTGATTTGA+AGG | 0.371474 | 8.3:-7467955 | MS.gene035313:CDS |
CAACTTAATGGCGCTCACTA+TGG | 0.374702 | 8.3:-7468563 | MS.gene035313:CDS |
AAAATGCTTGTATTCTTATG+AGG | 0.386830 | 8.3:+7468137 | None:intergenic |
CTTAATGTTAGGTTTGCCTT+GGG | 0.387185 | 8.3:-7468005 | MS.gene035313:CDS |
GGTCTCGTTGGTGGGATGGA+AGG | 0.412273 | 8.3:+7468539 | None:intergenic |
TTCAAGCCACTCGTTGTGAA+TGG | 0.417797 | 8.3:-7467887 | MS.gene035313:CDS |
GGCTTCTGCAGTTGCATCTT+CGG | 0.421562 | 8.3:-7468488 | MS.gene035313:CDS |
TTCTACAAAGATGTTAGGTT+TGG | 0.421817 | 8.3:-7468188 | MS.gene035313:CDS |
ACGGAACAACAACCTCCATT+TGG | 0.427174 | 8.3:+7467860 | None:intergenic |
GCCTTGGGTTTGATCAAGAC+AGG | 0.435553 | 8.3:-7467990 | MS.gene035313:CDS |
GTCTCGTTGGTGGGATGGAA+GGG | 0.452448 | 8.3:+7468540 | None:intergenic |
TGGTGGTCTCGTTGGTGGGA+TGG | 0.462701 | 8.3:+7468535 | None:intergenic |
CGCCTTGGTGGTCTCGTTGG+TGG | 0.462770 | 8.3:+7468530 | None:intergenic |
TCAAGCCACTCGTTGTGAAT+GGG | 0.463646 | 8.3:-7467886 | MS.gene035313:CDS |
GAACCTTCAAATCACAATGA+TGG | 0.467040 | 8.3:+7467952 | None:intergenic |
CCGGCATTGTGGCGTCGCCT+TGG | 0.473024 | 8.3:+7468515 | None:intergenic |
CGACGCCACAATGCCGGCTG+TGG | 0.473989 | 8.3:-7468509 | MS.gene035313:CDS |
TCAATAAGGAGACGAACAAT+GGG | 0.474447 | 8.3:-7468055 | MS.gene035313:CDS |
GTTCCATTGTTTGATTTCAA+AGG | 0.475107 | 8.3:+7467930 | None:intergenic |
CATAGCCACTATCATCATCT+TGG | 0.479266 | 8.3:-7468405 | MS.gene035313:CDS |
GGTTTATGGAATTAATTTGA+AGG | 0.491580 | 8.3:-7468033 | MS.gene035313:CDS |
ACGGTGAACTTGAGAGCGTT+AGG | 0.498857 | 8.3:+7468344 | None:intergenic |
CCAAGGCGACGCCACAATGC+CGG | 0.500601 | 8.3:-7468515 | MS.gene035313:CDS |
GCATTGTGGCGTCGCCTTGG+TGG | 0.501481 | 8.3:+7468518 | None:intergenic |
ATCATCTTGGTGGCAATCGT+TGG | 0.506170 | 8.3:-7468392 | MS.gene035313:CDS |
GCCTTGGTGGTCTCGTTGGT+GGG | 0.515070 | 8.3:+7468531 | None:intergenic |
GTTGTGAATGGGATTCCAAA+TGG | 0.520609 | 8.3:-7467875 | MS.gene035313:CDS |
GCAACTGCAGAAGCCACAGC+CGG | 0.529666 | 8.3:+7468496 | None:intergenic |
TTCAATAAGGAGACGAACAA+TGG | 0.532039 | 8.3:-7468056 | MS.gene035313:CDS |
AGAAACCCTAATAGAAGAGT+TGG | 0.542018 | 8.3:-7468242 | MS.gene035313:CDS |
GGAATCCCATTCACAACGAG+TGG | 0.551540 | 8.3:+7467881 | None:intergenic |
CCTTGGGTTTGATCAAGACA+GGG | 0.553635 | 8.3:-7467989 | MS.gene035313:CDS |
CGTCGCCTTGGTGGTCTCGT+TGG | 0.559136 | 8.3:+7468527 | None:intergenic |
TGCCACCAAGATGATGATAG+TGG | 0.568500 | 8.3:+7468400 | None:intergenic |
GGCTGCTTTAGAAGCTGTTG+CGG | 0.570457 | 8.3:-7468467 | MS.gene035313:CDS |
AGGTTTGGTACTCAAACCCT+AGG | 0.572620 | 8.3:-7468173 | MS.gene035313:CDS |
AGCGCCATTAAGTTGATGAT+CGG | 0.582874 | 8.3:+7468571 | None:intergenic |
AGCCACTATCATCATCTTGG+TGG | 0.583458 | 8.3:-7468402 | MS.gene035313:CDS |
CCCTGTCTTGATCAAACCCA+AGG | 0.584419 | 8.3:+7467989 | None:intergenic |
GAAATCTGACTTGAACTCAA+AGG | 0.585603 | 8.3:+7468083 | None:intergenic |
GTTCCTTTGAAATCAAACAA+TGG | 0.618380 | 8.3:-7467933 | MS.gene035313:CDS |
AGAAGCCACAGCCGGCATTG+TGG | 0.624953 | 8.3:+7468504 | None:intergenic |
GACGCACGATAAGCCAGAAG+AGG | 0.641544 | 8.3:+7468366 | None:intergenic |
AGCAAGTGATGCCTCTGTAA+CGG | 0.656894 | 8.3:+7468325 | None:intergenic |
TCTCAAGTTCACCGTTACAG+AGG | 0.671974 | 8.3:-7468336 | MS.gene035313:CDS |
TCCCACCAACGAGACCACCA+AGG | 0.699917 | 8.3:-7468532 | MS.gene035313:CDS |
GTGAATGGGATTCCAAATGG+AGG | 0.700064 | 8.3:-7467872 | MS.gene035313:CDS |
CAATAAGGAGACGAACAATG+GGG | 0.723520 | 8.3:-7468054 | MS.gene035313:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | ATTTTGAATCCTGTTTTTAA+AGG | - | chr8.3:7468313-7468332 | MS.gene035313:CDS | 20.0% |
! | AAAATGCTTGTATTCTTATG+AGG | + | chr8.3:7468298-7468317 | None:intergenic | 25.0% |
!! | GGTTTATGGAATTAATTTGA+AGG | - | chr8.3:7468399-7468418 | MS.gene035313:CDS | 25.0% |
AAACAATGGAACTTCTTCTT+TGG | - | chr8.3:7468513-7468532 | MS.gene035313:CDS | 30.0% | |
AAACCATCATTGTGATTTGA+AGG | - | chr8.3:7468477-7468496 | MS.gene035313:CDS | 30.0% | |
AACAATGGAACTTCTTCTTT+GGG | - | chr8.3:7468514-7468533 | MS.gene035313:CDS | 30.0% | |
TTCTACAAAGATGTTAGGTT+TGG | - | chr8.3:7468244-7468263 | MS.gene035313:CDS | 30.0% | |
TTTCGTTCTACAAAGATGTT+AGG | - | chr8.3:7468239-7468258 | MS.gene035313:CDS | 30.0% | |
! | AGGTTGAAAGAATTTTCCTA+GGG | + | chr8.3:7468278-7468297 | None:intergenic | 30.0% |
! | GTTCCATTGTTTGATTTCAA+AGG | + | chr8.3:7468505-7468524 | None:intergenic | 30.0% |
! | TGAAGGTTTTGCTTAATGTT+AGG | - | chr8.3:7468416-7468435 | MS.gene035313:CDS | 30.0% |
! | TTTGAGTTCAAGTCAGATTT+CGG | - | chr8.3:7468351-7468370 | MS.gene035313:CDS | 30.0% |
!! | ACTTGTTGTCCTTTAAAAAC+AGG | + | chr8.3:7468325-7468344 | None:intergenic | 30.0% |
!! | GTTCCTTTGAAATCAAACAA+TGG | - | chr8.3:7468499-7468518 | MS.gene035313:CDS | 30.0% |
AGAAACCCTAATAGAAGAGT+TGG | - | chr8.3:7468190-7468209 | MS.gene035313:CDS | 35.0% | |
AGACACCAACTCTTCTATTA+GGG | + | chr8.3:7468198-7468217 | None:intergenic | 35.0% | |
CTTAATGTTAGGTTTGCCTT+GGG | - | chr8.3:7468427-7468446 | MS.gene035313:CDS | 35.0% | |
GAACCTTCAAATCACAATGA+TGG | + | chr8.3:7468483-7468502 | None:intergenic | 35.0% | |
GAACTTCTTCTTTGGGTAAT+GGG | - | chr8.3:7468521-7468540 | MS.gene035313:CDS | 35.0% | |
TAGACACCAACTCTTCTATT+AGG | + | chr8.3:7468199-7468218 | None:intergenic | 35.0% | |
TCAATAAGGAGACGAACAAT+GGG | - | chr8.3:7468377-7468396 | MS.gene035313:CDS | 35.0% | |
TCAGATTTCGGAGTTCAATA+AGG | - | chr8.3:7468363-7468382 | MS.gene035313:CDS | 35.0% | |
TGGCTATGATTCTGCAAATT+AGG | + | chr8.3:7468015-7468034 | None:intergenic | 35.0% | |
TTCAATAAGGAGACGAACAA+TGG | - | chr8.3:7468376-7468395 | MS.gene035313:CDS | 35.0% | |
! | GAAATCTGACTTGAACTCAA+AGG | + | chr8.3:7468352-7468371 | None:intergenic | 35.0% |
! | GAGGTTGAAAGAATTTTCCT+AGG | + | chr8.3:7468279-7468298 | None:intergenic | 35.0% |
ATGGCCGATCATCAACTTAA+TGG | - | chr8.3:7467857-7467876 | MS.gene035313:CDS | 40.0% | |
CAATAAGGAGACGAACAATG+GGG | - | chr8.3:7468378-7468397 | MS.gene035313:CDS | 40.0% | |
CATAGCCACTATCATCATCT+TGG | - | chr8.3:7468027-7468046 | MS.gene035313:CDS | 40.0% | |
GCTTAATGTTAGGTTTGCCT+TGG | - | chr8.3:7468426-7468445 | MS.gene035313:CDS | 40.0% | |
GGAACTTCTTCTTTGGGTAA+TGG | - | chr8.3:7468520-7468539 | MS.gene035313:CDS | 40.0% | |
GTTGTGAATGGGATTCCAAA+TGG | - | chr8.3:7468557-7468576 | MS.gene035313:CDS | 40.0% | |
!! | AGCGCCATTAAGTTGATGAT+CGG | + | chr8.3:7467864-7467883 | None:intergenic | 40.0% |
ACGGAACAACAACCTCCATT+TGG | + | chr8.3:7468575-7468594 | None:intergenic | 45.0% | |
AGCAAGTGATGCCTCTGTAA+CGG | + | chr8.3:7468110-7468129 | None:intergenic | 45.0% | |
AGCCACTATCATCATCTTGG+TGG | - | chr8.3:7468030-7468049 | MS.gene035313:CDS | 45.0% | |
CAACTTAATGGCGCTCACTA+TGG | - | chr8.3:7467869-7467888 | MS.gene035313:CDS | 45.0% | |
CCTTGGGTTTGATCAAGACA+GGG | - | chr8.3:7468443-7468462 | MS.gene035313:CDS | 45.0% | |
GAGACGAACAATGGGGTTTA+TGG | - | chr8.3:7468385-7468404 | MS.gene035313:CDS | 45.0% | |
GTGAATGGGATTCCAAATGG+AGG | - | chr8.3:7468560-7468579 | MS.gene035313:CDS | 45.0% | |
TCAAGCCACTCGTTGTGAAT+GGG | - | chr8.3:7468546-7468565 | MS.gene035313:CDS | 45.0% | |
TCTCAAGTTCACCGTTACAG+AGG | - | chr8.3:7468096-7468115 | MS.gene035313:CDS | 45.0% | |
TGCCACCAAGATGATGATAG+TGG | + | chr8.3:7468035-7468054 | None:intergenic | 45.0% | |
TTCAAGCCACTCGTTGTGAA+TGG | - | chr8.3:7468545-7468564 | MS.gene035313:CDS | 45.0% | |
! | AGGTTTGGTACTCAAACCCT+AGG | - | chr8.3:7468259-7468278 | MS.gene035313:CDS | 45.0% |
! | ATCATCTTGGTGGCAATCGT+TGG | - | chr8.3:7468040-7468059 | MS.gene035313:CDS | 45.0% |
!! | CAATCGTTGGTTTCCTCTTC+TGG | - | chr8.3:7468053-7468072 | MS.gene035313:CDS | 45.0% |
CCCTGTCTTGATCAAACCCA+AGG | + | chr8.3:7468446-7468465 | None:intergenic | 50.0% | |
GCCTTGGGTTTGATCAAGAC+AGG | - | chr8.3:7468442-7468461 | MS.gene035313:CDS | 50.0% | |
GGAATCCCATTCACAACGAG+TGG | + | chr8.3:7468554-7468573 | None:intergenic | 50.0% | |
GGCTTCTGCAGTTGCATCTT+CGG | - | chr8.3:7467944-7467963 | MS.gene035313:CDS | 50.0% | |
!! | ACGGTGAACTTGAGAGCGTT+AGG | + | chr8.3:7468091-7468110 | None:intergenic | 50.0% |
!! | GGCTGCTTTAGAAGCTGTTG+CGG | - | chr8.3:7467965-7467984 | MS.gene035313:CDS | 50.0% |
GACGCACGATAAGCCAGAAG+AGG | + | chr8.3:7468069-7468088 | None:intergenic | 55.0% | |
! | GTCTCGTTGGTGGGATGGAA+GGG | + | chr8.3:7467895-7467914 | None:intergenic | 55.0% |
AGAAGCCACAGCCGGCATTG+TGG | + | chr8.3:7467931-7467950 | None:intergenic | 60.0% | |
GCAACTGCAGAAGCCACAGC+CGG | + | chr8.3:7467939-7467958 | None:intergenic | 60.0% | |
TCCCACCAACGAGACCACCA+AGG | - | chr8.3:7467900-7467919 | MS.gene035313:CDS | 60.0% | |
! | GCCTTGGTGGTCTCGTTGGT+GGG | + | chr8.3:7467904-7467923 | None:intergenic | 60.0% |
! | GGTCTCGTTGGTGGGATGGA+AGG | + | chr8.3:7467896-7467915 | None:intergenic | 60.0% |
! | TGGTGGTCTCGTTGGTGGGA+TGG | + | chr8.3:7467900-7467919 | None:intergenic | 60.0% |
CCAAGGCGACGCCACAATGC+CGG | - | chr8.3:7467917-7467936 | MS.gene035313:CDS | 65.0% | |
GCATTGTGGCGTCGCCTTGG+TGG | + | chr8.3:7467917-7467936 | None:intergenic | 65.0% | |
! | CGCCTTGGTGGTCTCGTTGG+TGG | + | chr8.3:7467905-7467924 | None:intergenic | 65.0% |
! | CGTCGCCTTGGTGGTCTCGT+TGG | + | chr8.3:7467908-7467927 | None:intergenic | 65.0% |
CCGGCATTGTGGCGTCGCCT+TGG | + | chr8.3:7467920-7467939 | None:intergenic | 70.0% | |
! | CGACGCCACAATGCCGGCTG+TGG | - | chr8.3:7467923-7467942 | MS.gene035313:CDS | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.3 | gene | 7467857 | 7468597 | 7467857 | ID=MS.gene035313 |
chr8.3 | mRNA | 7467857 | 7468597 | 7467857 | ID=MS.gene035313.t1;Parent=MS.gene035313 |
chr8.3 | exon | 7467857 | 7468597 | 7467857 | ID=MS.gene035313.t1.exon1;Parent=MS.gene035313.t1 |
chr8.3 | CDS | 7467857 | 7468597 | 7467857 | ID=cds.MS.gene035313.t1;Parent=MS.gene035313.t1 |
Gene Sequence |
Protein sequence |