Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene035806.t1 | GAU45500.1 | 98.3 | 301 | 5 | 0 | 1 | 301 | 1 | 301 | 6.20E-135 | 490.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene035806.t1 | O64740 | 78.8 | 302 | 63 | 1 | 1 | 301 | 1 | 302 | 1.7e-96 | 354.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene035806.t1 | A0A2Z6P822 | 98.3 | 301 | 5 | 0 | 1 | 301 | 1 | 301 | 4.5e-135 | 490.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene032173 | MS.gene035806 | PPI |
| MS.gene85280 | MS.gene035806 | PPI |
| MS.gene064541 | MS.gene035806 | PPI |
| MS.gene73118 | MS.gene035806 | PPI |
| MS.gene047763 | MS.gene035806 | PPI |
| MS.gene98722 | MS.gene035806 | PPI |
| MS.gene70974 | MS.gene035806 | PPI |
| MS.gene72123 | MS.gene035806 | PPI |
| MS.gene59349 | MS.gene035806 | PPI |
| MS.gene010482 | MS.gene035806 | PPI |
| MS.gene048821 | MS.gene035806 | PPI |
| MS.gene030377 | MS.gene035806 | PPI |
| MS.gene052015 | MS.gene035806 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene035806.t1 | MTR_3g054090 | 97.674 | 301 | 7 | 0 | 1 | 301 | 1 | 301 | 0.0 | 600 |
| MS.gene035806.t1 | MTR_6g072020 | 26.752 | 314 | 193 | 9 | 20 | 301 | 18 | 326 | 2.34e-18 | 84.3 |
| MS.gene035806.t1 | MTR_7g104550 | 25.397 | 252 | 155 | 10 | 46 | 286 | 7 | 236 | 1.76e-12 | 67.4 |
| MS.gene035806.t1 | MTR_5g016370 | 24.262 | 305 | 156 | 13 | 23 | 284 | 318 | 590 | 3.85e-12 | 67.0 |
| MS.gene035806.t1 | MTR_4g095058 | 27.660 | 235 | 134 | 10 | 54 | 284 | 369 | 571 | 4.00e-12 | 67.0 |
| MS.gene035806.t1 | MTR_4g095058 | 27.660 | 235 | 134 | 10 | 54 | 284 | 371 | 573 | 4.16e-12 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene035806.t1 | AT2G30050 | 84.768 | 302 | 45 | 1 | 1 | 301 | 1 | 302 | 0.0 | 529 |
| MS.gene035806.t1 | AT3G01340 | 81.457 | 302 | 55 | 1 | 1 | 301 | 1 | 302 | 0.0 | 518 |
| MS.gene035806.t1 | AT3G01340 | 81.457 | 302 | 55 | 1 | 1 | 301 | 1 | 302 | 0.0 | 518 |
| MS.gene035806.t1 | AT1G64350 | 26.007 | 273 | 161 | 11 | 60 | 301 | 61 | 323 | 3.79e-13 | 69.3 |
| MS.gene035806.t1 | AT4G02730 | 26.087 | 253 | 153 | 10 | 46 | 298 | 34 | 252 | 1.31e-12 | 67.8 |
| MS.gene035806.t1 | AT2G26060 | 27.092 | 251 | 149 | 12 | 47 | 285 | 12 | 240 | 5.57e-11 | 63.2 |
Find 112 sgRNAs with CRISPR-Local
Find 111 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAGGTGCTCTTGTTGGTTC+AGG | 0.204960 | 3.2:-45976349 | MS.gene035806:CDS |
| TGTTGCTTGGGCACCGAATT+TGG | 0.238572 | 3.2:-45976194 | MS.gene035806:CDS |
| TTGGTGTGACTTCTGTTTCT+TGG | 0.240030 | 3.2:-45976387 | MS.gene035806:CDS |
| CTGGTCACCAAGGGCCTGTT+TGG | 0.241942 | 3.2:-45976681 | MS.gene035806:CDS |
| ATGACGGACGCGTCATTCTT+TGG | 0.264898 | 3.2:-45976606 | MS.gene035806:CDS |
| CCTGTTCAGAAGCTTTGTTC+TGG | 0.295507 | 3.2:-45976316 | MS.gene035806:CDS |
| GAGCTTGGATCCATTCATTC+TGG | 0.309347 | 3.2:+45976572 | None:intergenic |
| GAAACAACAATGTCACATTA+TGG | 0.309368 | 3.2:-45976003 | MS.gene035806:CDS |
| GCACTAGCAATAGTAGATTT+AGG | 0.318347 | 3.2:+45976166 | None:intergenic |
| GTCTTTGACAGGAAATATAT+TGG | 0.319441 | 3.2:-45976038 | MS.gene035806:CDS |
| GATCACACGATTAAGATAAT+TGG | 0.328547 | 3.2:-45976742 | MS.gene035806:CDS |
| CACTTCAGATGCATAATGAT+TGG | 0.332563 | 3.2:-45976225 | MS.gene035806:CDS |
| GCCTGTTTGGGAGGTTGTGT+GGG | 0.350708 | 3.2:-45976668 | MS.gene035806:CDS |
| GTCTGTGAATTCAGTTGCTT+GGG | 0.353330 | 3.2:-45976527 | MS.gene035806:CDS |
| GTTGCTTGGGCACCGAATTT+GGG | 0.365628 | 3.2:-45976193 | MS.gene035806:CDS |
| AAGAATGACGCGTCCGTCAT+AGG | 0.368314 | 3.2:+45976609 | None:intergenic |
| GTGTGGGCTCACCCTAAGTT+TGG | 0.382617 | 3.2:-45976652 | MS.gene035806:CDS |
| TGGTGTGACTTCTGTTTCTT+GGG | 0.389730 | 3.2:-45976386 | MS.gene035806:CDS |
| TGGGCTCCTTCGATGGCGCC+AGG | 0.392172 | 3.2:-45976367 | MS.gene035806:CDS |
| TTGGCAAAGAAGGGGATCAT+TGG | 0.398091 | 3.2:-45976111 | MS.gene035806:CDS |
| GAAACAGAAGTCACACCAAC+CGG | 0.403176 | 3.2:+45976391 | None:intergenic |
| TGCTTGGGCGCCTCATGAGT+TGG | 0.404443 | 3.2:-45976512 | MS.gene035806:CDS |
| ATGGCGCCAGGTGCTCTTGT+TGG | 0.405417 | 3.2:-45976355 | MS.gene035806:CDS |
| TTGGCTTGTGCTTCGTCTGA+TGG | 0.406467 | 3.2:-45976481 | MS.gene035806:CDS |
| GGCCTGTTTGGGAGGTTGTG+TGG | 0.408850 | 3.2:-45976669 | MS.gene035806:CDS |
| TGGTCACCAAGGGCCTGTTT+GGG | 0.409839 | 3.2:-45976680 | MS.gene035806:CDS |
| GCTTGGGCGCCTCATGAGTT+GGG | 0.412397 | 3.2:-45976511 | MS.gene035806:CDS |
| CAGGTGCTCTTGTTGGTTCA+GGG | 0.413499 | 3.2:-45976348 | MS.gene035806:CDS |
| CGTCTGTGAATTCAGTTGCT+TGG | 0.416920 | 3.2:-45976528 | MS.gene035806:CDS |
| ATGATTTCAAGACCTCTGTT+TGG | 0.431581 | 3.2:-45976072 | MS.gene035806:CDS |
| GCCCACACAACCTCCCAAAC+AGG | 0.434635 | 3.2:+45976667 | None:intergenic |
| TACTATTGCTAGTGCGTCGC+AGG | 0.442514 | 3.2:-45976158 | MS.gene035806:CDS |
| TTATGGAAAGAAGCCGTAGA+TGG | 0.443381 | 3.2:-45975986 | MS.gene035806:CDS |
| TCATGAGTTGGGTCTCTGCT+TGG | 0.444150 | 3.2:-45976500 | MS.gene035806:CDS |
| GATTTAGGAAGTCCCAAATT+CGG | 0.447910 | 3.2:+45976181 | None:intergenic |
| CGTAGATGGGGAATGGCAAC+AGG | 0.449286 | 3.2:-45975972 | MS.gene035806:CDS |
| TGTTTCTTGGGCTCCTTCGA+TGG | 0.450549 | 3.2:-45976374 | MS.gene035806:CDS |
| CCAGAACAAAGCTTCTGAAC+AGG | 0.458908 | 3.2:+45976316 | None:intergenic |
| ATTGGGTTCGTGATGTTGCT+TGG | 0.468374 | 3.2:-45976207 | MS.gene035806:CDS |
| GATGTTGCAATGGATTACTA+TGG | 0.468886 | 3.2:-45976790 | MS.gene035806:CDS |
| ATATGGACCGTTGGCAAAGA+AGG | 0.469148 | 3.2:-45976121 | MS.gene035806:CDS |
| CCTCTGTTTGGAGGGTATCA+TGG | 0.470051 | 3.2:-45976060 | MS.gene035806:CDS |
| TTGGGTTCGTGATGTTGCTT+GGG | 0.471143 | 3.2:-45976206 | MS.gene035806:CDS |
| TCATTATGCATCTGAAGTGC+AGG | 0.475699 | 3.2:+45976229 | None:intergenic |
| GCGAGAAGGGAACCAAACTT+AGG | 0.477573 | 3.2:+45976640 | None:intergenic |
| TGGCTTGTGCTTCGTCTGAT+GGG | 0.479615 | 3.2:-45976480 | MS.gene035806:CDS |
| ACTTCAGATGCATAATGATT+GGG | 0.487890 | 3.2:-45976224 | MS.gene035806:CDS |
| GTTCAGAAGCTTTGTTCTGG+TGG | 0.488323 | 3.2:-45976313 | MS.gene035806:CDS |
| TGGCAAAGAAGGGGATCATT+GGG | 0.489326 | 3.2:-45976110 | MS.gene035806:CDS |
| CTGCAAGGGCAGATGGTGGA+TGG | 0.503412 | 3.2:-45976441 | MS.gene035806:CDS |
| ATTTCAAGACCTCTGTTTGG+AGG | 0.505223 | 3.2:-45976069 | MS.gene035806:CDS |
| CAGCAATGGACAGTGGAAGA+TGG | 0.510856 | 3.2:-45976260 | MS.gene035806:CDS |
| CGCGTCATTCTTTGGAAGGA+GGG | 0.511398 | 3.2:-45976598 | MS.gene035806:CDS |
| AATATATTGGCTGTGGCTGA+TGG | 0.512420 | 3.2:-45976025 | MS.gene035806:CDS |
| TATGGAAAGAAGCCGTAGAT+GGG | 0.514853 | 3.2:-45975985 | MS.gene035806:CDS |
| AGGAGGGTAACCAGAATGAA+TGG | 0.519620 | 3.2:-45976582 | MS.gene035806:CDS |
| CCTTCTCAGAAGGTTGAAAC+CGG | 0.519832 | 3.2:-45976832 | MS.gene035806:CDS |
| GTGGACAATGTCTTGATGAC+CGG | 0.520259 | 3.2:+45976813 | None:intergenic |
| TCACCAAGGGCCTGTTTGGG+AGG | 0.524084 | 3.2:-45976677 | MS.gene035806:CDS |
| AGGGTATCATGGTCTTTGAC+AGG | 0.524931 | 3.2:-45976049 | MS.gene035806:CDS |
| AGGACGGTAAAGTGATCATA+TGG | 0.528476 | 3.2:-45976138 | MS.gene035806:CDS |
| GAGGCTAGCAACAGCTTCAT+CGG | 0.529147 | 3.2:-45976764 | MS.gene035806:CDS |
| CAGCATCTAGCAACTTTGAC+TGG | 0.538778 | 3.2:-45976700 | MS.gene035806:CDS |
| ATGATCCCCTTCTTTGCCAA+CGG | 0.541054 | 3.2:+45976114 | None:intergenic |
| TGGTTGCGATAATACTGTTA+AGG | 0.541340 | 3.2:-45976293 | MS.gene035806:CDS |
| AGAGCACCTGGCGCCATCGA+AGG | 0.542437 | 3.2:+45976361 | None:intergenic |
| CGAGAAGGGAACCAAACTTA+GGG | 0.543581 | 3.2:+45976641 | None:intergenic |
| CAGAAACATGCCTTCTCAGA+AGG | 0.550664 | 3.2:-45976842 | None:intergenic |
| TATGGACCGTTGGCAAAGAA+GGG | 0.551166 | 3.2:-45976120 | MS.gene035806:CDS |
| GACAGGAAATATATTGGCTG+TGG | 0.552846 | 3.2:-45976032 | MS.gene035806:CDS |
| CTGTTGCCATTCCCCATCTA+CGG | 0.553740 | 3.2:+45975973 | None:intergenic |
| GCTCATCAAAGACATGAGCT+TGG | 0.554760 | 3.2:+45976557 | None:intergenic |
| CATAGGAACATGAAGCGAGA+AGG | 0.556637 | 3.2:+45976626 | None:intergenic |
| TTTCAAGACCTCTGTTTGGA+GGG | 0.557103 | 3.2:-45976068 | MS.gene035806:CDS |
| AGGGGATCATTGGGAAGGCA+AGG | 0.557835 | 3.2:-45976101 | MS.gene035806:CDS |
| GTATTTACTGCAAGGGCAGA+TGG | 0.559270 | 3.2:-45976448 | MS.gene035806:CDS |
| CAACCTCCCAAACAGGCCCT+TGG | 0.559441 | 3.2:+45976674 | None:intergenic |
| CAATGGATTACTATGGAAAG+AGG | 0.559724 | 3.2:-45976783 | MS.gene035806:CDS |
| CTCGCTTCATGTTCCTATGA+CGG | 0.561648 | 3.2:-45976622 | MS.gene035806:CDS |
| CCGGTTTCAACCTTCTGAGA+AGG | 0.569075 | 3.2:+45976832 | None:intergenic |
| CATTGTCCACGATGTTGCAA+TGG | 0.571021 | 3.2:-45976800 | MS.gene035806:CDS |
| ATATATCGGTATTTACTGCA+AGG | 0.573760 | 3.2:-45976456 | MS.gene035806:CDS |
| CGGACGCGTCATTCTTTGGA+AGG | 0.574371 | 3.2:-45976602 | MS.gene035806:CDS |
| CCTGAACCAACAAGAGCACC+TGG | 0.575589 | 3.2:+45976349 | None:intergenic |
| TGCAAGGGCAGATGGTGGAT+GGG | 0.576134 | 3.2:-45976440 | MS.gene035806:CDS |
| ACGCGTCATTCTTTGGAAGG+AGG | 0.581061 | 3.2:-45976599 | MS.gene035806:CDS |
| AAGAAGCCGTAGATGGGGAA+TGG | 0.590067 | 3.2:-45975979 | MS.gene035806:CDS |
| TTCGTCTGATGGGAATATAT+CGG | 0.590339 | 3.2:-45976470 | MS.gene035806:CDS |
| ATAGGAACATGAAGCGAGAA+GGG | 0.592233 | 3.2:+45976627 | None:intergenic |
| AAAGTGATCATATGGACCGT+TGG | 0.593238 | 3.2:-45976130 | MS.gene035806:CDS |
| ATTGCTAGTGCGTCGCAGGA+CGG | 0.600196 | 3.2:-45976154 | MS.gene035806:CDS |
| AAGCAGAGACCCAACTCATG+AGG | 0.602443 | 3.2:+45976502 | None:intergenic |
| GAGGATTGATCAAGCTCACC+CGG | 0.616430 | 3.2:-45976410 | MS.gene035806:CDS |
| CATTATGCATCTGAAGTGCA+GGG | 0.623511 | 3.2:+45976230 | None:intergenic |
| TATATCGGTATTTACTGCAA+GGG | 0.626484 | 3.2:-45976455 | MS.gene035806:CDS |
| AAGGTGTGGAAGCTCAGCAA+TGG | 0.628171 | 3.2:-45976274 | MS.gene035806:CDS |
| CAACTTTGACTGGTCACCAA+GGG | 0.628577 | 3.2:-45976690 | MS.gene035806:CDS |
| ATTGATCAAGCTCACCCGGT+TGG | 0.635140 | 3.2:-45976406 | MS.gene035806:CDS |
| AAACAGAAGTCACACCAACC+GGG | 0.636764 | 3.2:+45976392 | None:intergenic |
| ATGGACCGTTGGCAAAGAAG+GGG | 0.639822 | 3.2:-45976119 | MS.gene035806:CDS |
| TTTACTGCAAGGGCAGATGG+TGG | 0.642065 | 3.2:-45976445 | MS.gene035806:CDS |
| ATGGAAAGAAGCCGTAGATG+GGG | 0.650539 | 3.2:-45975984 | MS.gene035806:CDS |
| GCAACTTTGACTGGTCACCA+AGG | 0.656777 | 3.2:-45976691 | MS.gene035806:CDS |
| GGAAGCTCAGCAATGGACAG+TGG | 0.662826 | 3.2:-45976267 | MS.gene035806:CDS |
| GCGATAATACTGTTAAGGTG+TGG | 0.664994 | 3.2:-45976288 | MS.gene035806:CDS |
| AAAGAAGGGGATCATTGGGA+AGG | 0.667803 | 3.2:-45976106 | MS.gene035806:CDS |
| CAAAGTTGCTAGATGCTGAG+AGG | 0.674911 | 3.2:+45976705 | None:intergenic |
| ATGGTGGATGGGACACCTCG+AGG | 0.682025 | 3.2:-45976429 | MS.gene035806:CDS |
| AGTAATCCATTGCAACATCG+TGG | 0.685605 | 3.2:+45976794 | None:intergenic |
| ATGGCAACAGGTGACAACAG+TGG | 0.686621 | 3.2:-45975960 | MS.gene035806:CDS |
| CCATGATACCCTCCAAACAG+AGG | 0.702416 | 3.2:+45976060 | None:intergenic |
| GTGAGCTTGATCAATCCTCG+AGG | 0.725816 | 3.2:+45976414 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ACTTCAGATGCATAATGATT+GGG | - | chr3.2:45976563-45976582 | MS.gene035806:CDS | 30.0% | |
| ATATATCGGTATTTACTGCA+AGG | - | chr3.2:45976331-45976350 | MS.gene035806:CDS | 30.0% | |
| GAAACAACAATGTCACATTA+TGG | - | chr3.2:45976784-45976803 | MS.gene035806:CDS | 30.0% | |
| GATCACACGATTAAGATAAT+TGG | - | chr3.2:45976045-45976064 | MS.gene035806:CDS | 30.0% | |
| GTCTTTGACAGGAAATATAT+TGG | - | chr3.2:45976749-45976768 | MS.gene035806:CDS | 30.0% | |
| TATATCGGTATTTACTGCAA+GGG | - | chr3.2:45976332-45976351 | MS.gene035806:CDS | 30.0% | |
| ATGATTTCAAGACCTCTGTT+TGG | - | chr3.2:45976715-45976734 | MS.gene035806:CDS | 35.0% | |
| CACTTCAGATGCATAATGAT+TGG | - | chr3.2:45976562-45976581 | MS.gene035806:CDS | 35.0% | |
| GATTTAGGAAGTCCCAAATT+CGG | + | chr3.2:45976609-45976628 | None:intergenic | 35.0% | |
| GCACTAGCAATAGTAGATTT+AGG | + | chr3.2:45976624-45976643 | None:intergenic | 35.0% | |
| TGGTTGCGATAATACTGTTA+AGG | - | chr3.2:45976494-45976513 | MS.gene035806:CDS | 35.0% | |
| TTCGTCTGATGGGAATATAT+CGG | - | chr3.2:45976317-45976336 | MS.gene035806:CDS | 35.0% | |
| !! | CAATGGATTACTATGGAAAG+AGG | - | chr3.2:45976004-45976023 | MS.gene035806:CDS | 35.0% |
| !! | GATGTTGCAATGGATTACTA+TGG | - | chr3.2:45975997-45976016 | MS.gene035806:CDS | 35.0% |
| AAAGTGATCATATGGACCGT+TGG | - | chr3.2:45976657-45976676 | MS.gene035806:CDS | 40.0% | |
| AGGACGGTAAAGTGATCATA+TGG | - | chr3.2:45976649-45976668 | MS.gene035806:CDS | 40.0% | |
| AGTAATCCATTGCAACATCG+TGG | + | chr3.2:45975996-45976015 | None:intergenic | 40.0% | |
| ATAGGAACATGAAGCGAGAA+GGG | + | chr3.2:45976163-45976182 | None:intergenic | 40.0% | |
| ATTTCAAGACCTCTGTTTGG+AGG | - | chr3.2:45976718-45976737 | MS.gene035806:CDS | 40.0% | |
| GCGATAATACTGTTAAGGTG+TGG | - | chr3.2:45976499-45976518 | MS.gene035806:CDS | 40.0% | |
| GTCTGTGAATTCAGTTGCTT+GGG | - | chr3.2:45976260-45976279 | MS.gene035806:CDS | 40.0% | |
| TATGGAAAGAAGCCGTAGAT+GGG | - | chr3.2:45976802-45976821 | MS.gene035806:CDS | 40.0% | |
| TTATGGAAAGAAGCCGTAGA+TGG | - | chr3.2:45976801-45976820 | MS.gene035806:CDS | 40.0% | |
| TTTCAAGACCTCTGTTTGGA+GGG | - | chr3.2:45976719-45976738 | MS.gene035806:CDS | 40.0% | |
| ! | AATATATTGGCTGTGGCTGA+TGG | - | chr3.2:45976762-45976781 | MS.gene035806:CDS | 40.0% |
| ! | CATTATGCATCTGAAGTGCA+GGG | + | chr3.2:45976560-45976579 | None:intergenic | 40.0% |
| ! | GACAGGAAATATATTGGCTG+TGG | - | chr3.2:45976755-45976774 | MS.gene035806:CDS | 40.0% |
| ! | TCATTATGCATCTGAAGTGC+AGG | + | chr3.2:45976561-45976580 | None:intergenic | 40.0% |
| ! | TGGTGTGACTTCTGTTTCTT+GGG | - | chr3.2:45976401-45976420 | MS.gene035806:CDS | 40.0% |
| ! | TTGGTGTGACTTCTGTTTCT+TGG | - | chr3.2:45976400-45976419 | MS.gene035806:CDS | 40.0% |
| AAACAGAAGTCACACCAACC+GGG | + | chr3.2:45976398-45976417 | None:intergenic | 45.0% | |
| AAAGAAGGGGATCATTGGGA+AGG | - | chr3.2:45976681-45976700 | MS.gene035806:CDS | 45.0% | |
| AGGAGGGTAACCAGAATGAA+TGG | - | chr3.2:45976205-45976224 | MS.gene035806:CDS | 45.0% | |
| ATATGGACCGTTGGCAAAGA+AGG | - | chr3.2:45976666-45976685 | MS.gene035806:CDS | 45.0% | |
| ATGATCCCCTTCTTTGCCAA+CGG | + | chr3.2:45976676-45976695 | None:intergenic | 45.0% | |
| ATGGAAAGAAGCCGTAGATG+GGG | - | chr3.2:45976803-45976822 | MS.gene035806:CDS | 45.0% | |
| ATTGGGTTCGTGATGTTGCT+TGG | - | chr3.2:45976580-45976599 | MS.gene035806:CDS | 45.0% | |
| CAAAGTTGCTAGATGCTGAG+AGG | + | chr3.2:45976085-45976104 | None:intergenic | 45.0% | |
| CAGCATCTAGCAACTTTGAC+TGG | - | chr3.2:45976087-45976106 | MS.gene035806:CDS | 45.0% | |
| CATAGGAACATGAAGCGAGA+AGG | + | chr3.2:45976164-45976183 | None:intergenic | 45.0% | |
| CATTGTCCACGATGTTGCAA+TGG | - | chr3.2:45975987-45976006 | MS.gene035806:CDS | 45.0% | |
| CCAGAACAAAGCTTCTGAAC+AGG | + | chr3.2:45976474-45976493 | None:intergenic | 45.0% | |
| CCTTCTCAGAAGGTTGAAAC+CGG | - | chr3.2:45975955-45975974 | MS.gene035806:CDS | 45.0% | |
| CGAGAAGGGAACCAAACTTA+GGG | + | chr3.2:45976149-45976168 | None:intergenic | 45.0% | |
| CGTCTGTGAATTCAGTTGCT+TGG | - | chr3.2:45976259-45976278 | MS.gene035806:CDS | 45.0% | |
| CTCGCTTCATGTTCCTATGA+CGG | - | chr3.2:45976165-45976184 | MS.gene035806:CDS | 45.0% | |
| GAAACAGAAGTCACACCAAC+CGG | + | chr3.2:45976399-45976418 | None:intergenic | 45.0% | |
| GAGCTTGGATCCATTCATTC+TGG | + | chr3.2:45976218-45976237 | None:intergenic | 45.0% | |
| GCTCATCAAAGACATGAGCT+TGG | + | chr3.2:45976233-45976252 | None:intergenic | 45.0% | |
| GTATTTACTGCAAGGGCAGA+TGG | - | chr3.2:45976339-45976358 | MS.gene035806:CDS | 45.0% | |
| TATGGACCGTTGGCAAAGAA+GGG | - | chr3.2:45976667-45976686 | MS.gene035806:CDS | 45.0% | |
| TGGCAAAGAAGGGGATCATT+GGG | - | chr3.2:45976677-45976696 | MS.gene035806:CDS | 45.0% | |
| TTGGCAAAGAAGGGGATCAT+TGG | - | chr3.2:45976676-45976695 | MS.gene035806:CDS | 45.0% | |
| ! | AGGGTATCATGGTCTTTGAC+AGG | - | chr3.2:45976738-45976757 | MS.gene035806:CDS | 45.0% |
| ! | CAACTTTGACTGGTCACCAA+GGG | - | chr3.2:45976097-45976116 | MS.gene035806:CDS | 45.0% |
| ! | GTGGACAATGTCTTGATGAC+CGG | + | chr3.2:45975977-45975996 | None:intergenic | 45.0% |
| ! | TTGGGTTCGTGATGTTGCTT+GGG | - | chr3.2:45976581-45976600 | MS.gene035806:CDS | 45.0% |
| !! | CCTGTTCAGAAGCTTTGTTC+TGG | - | chr3.2:45976471-45976490 | MS.gene035806:CDS | 45.0% |
| !! | GTTCAGAAGCTTTGTTCTGG+TGG | - | chr3.2:45976474-45976493 | MS.gene035806:CDS | 45.0% |
| AAGAAGCCGTAGATGGGGAA+TGG | - | chr3.2:45976808-45976827 | MS.gene035806:CDS | 50.0% | |
| AAGAATGACGCGTCCGTCAT+AGG | + | chr3.2:45976181-45976200 | None:intergenic | 50.0% | |
| AAGCAGAGACCCAACTCATG+AGG | + | chr3.2:45976288-45976307 | None:intergenic | 50.0% | |
| AAGGTGTGGAAGCTCAGCAA+TGG | - | chr3.2:45976513-45976532 | MS.gene035806:CDS | 50.0% | |
| ATGGACCGTTGGCAAAGAAG+GGG | - | chr3.2:45976668-45976687 | MS.gene035806:CDS | 50.0% | |
| ATGGCAACAGGTGACAACAG+TGG | - | chr3.2:45976827-45976846 | MS.gene035806:CDS | 50.0% | |
| ATTGATCAAGCTCACCCGGT+TGG | - | chr3.2:45976381-45976400 | MS.gene035806:CDS | 50.0% | |
| CAGCAATGGACAGTGGAAGA+TGG | - | chr3.2:45976527-45976546 | MS.gene035806:CDS | 50.0% | |
| CCATGATACCCTCCAAACAG+AGG | + | chr3.2:45976730-45976749 | None:intergenic | 50.0% | |
| CTGTTGCCATTCCCCATCTA+CGG | + | chr3.2:45976817-45976836 | None:intergenic | 50.0% | |
| GAGGATTGATCAAGCTCACC+CGG | - | chr3.2:45976377-45976396 | MS.gene035806:CDS | 50.0% | |
| GAGGCTAGCAACAGCTTCAT+CGG | - | chr3.2:45976023-45976042 | MS.gene035806:CDS | 50.0% | |
| GCGAGAAGGGAACCAAACTT+AGG | + | chr3.2:45976150-45976169 | None:intergenic | 50.0% | |
| GTGAGCTTGATCAATCCTCG+AGG | + | chr3.2:45976376-45976395 | None:intergenic | 50.0% | |
| TACTATTGCTAGTGCGTCGC+AGG | - | chr3.2:45976629-45976648 | MS.gene035806:CDS | 50.0% | |
| TGTTTCTTGGGCTCCTTCGA+TGG | - | chr3.2:45976413-45976432 | MS.gene035806:CDS | 50.0% | |
| TTTACTGCAAGGGCAGATGG+TGG | - | chr3.2:45976342-45976361 | MS.gene035806:CDS | 50.0% | |
| ! | ACGCGTCATTCTTTGGAAGG+AGG | - | chr3.2:45976188-45976207 | MS.gene035806:CDS | 50.0% |
| ! | CCGGTTTCAACCTTCTGAGA+AGG | + | chr3.2:45975958-45975977 | None:intergenic | 50.0% |
| ! | CGCGTCATTCTTTGGAAGGA+GGG | - | chr3.2:45976189-45976208 | MS.gene035806:CDS | 50.0% |
| ! | GCAACTTTGACTGGTCACCA+AGG | - | chr3.2:45976096-45976115 | MS.gene035806:CDS | 50.0% |
| ! | TCATGAGTTGGGTCTCTGCT+TGG | - | chr3.2:45976287-45976306 | MS.gene035806:CDS | 50.0% |
| ! | TGGCTTGTGCTTCGTCTGAT+GGG | - | chr3.2:45976307-45976326 | MS.gene035806:CDS | 50.0% |
| !! | ATGACGGACGCGTCATTCTT+TGG | - | chr3.2:45976181-45976200 | MS.gene035806:CDS | 50.0% |
| !! | CAGGTGCTCTTGTTGGTTCA+GGG | - | chr3.2:45976439-45976458 | MS.gene035806:CDS | 50.0% |
| !! | CCTCTGTTTGGAGGGTATCA+TGG | - | chr3.2:45976727-45976746 | MS.gene035806:CDS | 50.0% |
| !! | GTTGCTTGGGCACCGAATTT+GGG | - | chr3.2:45976594-45976613 | MS.gene035806:CDS | 50.0% |
| !! | TGTTGCTTGGGCACCGAATT+TGG | - | chr3.2:45976593-45976612 | MS.gene035806:CDS | 50.0% |
| !! | TTGGCTTGTGCTTCGTCTGA+TGG | - | chr3.2:45976306-45976325 | MS.gene035806:CDS | 50.0% |
| AGGGGATCATTGGGAAGGCA+AGG | - | chr3.2:45976686-45976705 | MS.gene035806:CDS | 55.0% | |
| ATTGCTAGTGCGTCGCAGGA+CGG | - | chr3.2:45976633-45976652 | MS.gene035806:CDS | 55.0% | |
| CGGACGCGTCATTCTTTGGA+AGG | - | chr3.2:45976185-45976204 | MS.gene035806:CDS | 55.0% | |
| CGTAGATGGGGAATGGCAAC+AGG | - | chr3.2:45976815-45976834 | MS.gene035806:CDS | 55.0% | |
| GCCTGTTTGGGAGGTTGTGT+GGG | - | chr3.2:45976119-45976138 | MS.gene035806:CDS | 55.0% | |
| GGAAGCTCAGCAATGGACAG+TGG | - | chr3.2:45976520-45976539 | MS.gene035806:CDS | 55.0% | |
| GTGTGGGCTCACCCTAAGTT+TGG | - | chr3.2:45976135-45976154 | MS.gene035806:CDS | 55.0% | |
| TGGTCACCAAGGGCCTGTTT+GGG | - | chr3.2:45976107-45976126 | MS.gene035806:CDS | 55.0% | |
| !! | CCAGGTGCTCTTGTTGGTTC+AGG | - | chr3.2:45976438-45976457 | MS.gene035806:CDS | 55.0% |
| !! | CCTGAACCAACAAGAGCACC+TGG | + | chr3.2:45976441-45976460 | None:intergenic | 55.0% |
| !! | TGCAAGGGCAGATGGTGGAT+GGG | - | chr3.2:45976347-45976366 | MS.gene035806:CDS | 55.0% |
| ATGGCGCCAGGTGCTCTTGT+TGG | - | chr3.2:45976432-45976451 | MS.gene035806:CDS | 60.0% | |
| CAACCTCCCAAACAGGCCCT+TGG | + | chr3.2:45976116-45976135 | None:intergenic | 60.0% | |
| CTGGTCACCAAGGGCCTGTT+TGG | - | chr3.2:45976106-45976125 | MS.gene035806:CDS | 60.0% | |
| GCCCACACAACCTCCCAAAC+AGG | + | chr3.2:45976123-45976142 | None:intergenic | 60.0% | |
| GCTTGGGCGCCTCATGAGTT+GGG | - | chr3.2:45976276-45976295 | MS.gene035806:CDS | 60.0% | |
| GGCCTGTTTGGGAGGTTGTG+TGG | - | chr3.2:45976118-45976137 | MS.gene035806:CDS | 60.0% | |
| TCACCAAGGGCCTGTTTGGG+AGG | - | chr3.2:45976110-45976129 | MS.gene035806:CDS | 60.0% | |
| TGCTTGGGCGCCTCATGAGT+TGG | - | chr3.2:45976275-45976294 | MS.gene035806:CDS | 60.0% | |
| !! | ATGGTGGATGGGACACCTCG+AGG | - | chr3.2:45976358-45976377 | MS.gene035806:CDS | 60.0% |
| !! | CTGCAAGGGCAGATGGTGGA+TGG | - | chr3.2:45976346-45976365 | MS.gene035806:CDS | 60.0% |
| ! | AGAGCACCTGGCGCCATCGA+AGG | + | chr3.2:45976429-45976448 | None:intergenic | 65.0% |
| TGGGCTCCTTCGATGGCGCC+AGG | - | chr3.2:45976420-45976439 | MS.gene035806:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 45975952 | 45976857 | 45975952 | ID=MS.gene035806 |
| chr3.2 | mRNA | 45975952 | 45976857 | 45975952 | ID=MS.gene035806.t1;Parent=MS.gene035806 |
| chr3.2 | exon | 45975952 | 45976857 | 45975952 | ID=MS.gene035806.t1.exon1;Parent=MS.gene035806.t1 |
| chr3.2 | CDS | 45975952 | 45976857 | 45975952 | ID=cds.MS.gene035806.t1;Parent=MS.gene035806.t1 |
| Gene Sequence |
| Protein sequence |
