Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064541.t1 | GAU45500.1 | 98.7 | 301 | 4 | 0 | 1 | 301 | 1 | 301 | 4.30E-136 | 494.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064541.t1 | O64740 | 79.1 | 302 | 62 | 1 | 1 | 301 | 1 | 302 | 1.2e-97 | 357.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064541.t1 | A0A2Z6P822 | 98.7 | 301 | 4 | 0 | 1 | 301 | 1 | 301 | 3.1e-136 | 494.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene064541 | MS.gene032173 | PPI |
| MS.gene064541 | MS.gene035806 | PPI |
| MS.gene064541 | MS.gene030377 | PPI |
| MS.gene064541 | MS.gene010482 | PPI |
| MS.gene064541 | MS.gene73118 | PPI |
| MS.gene064541 | MS.gene70974 | PPI |
| MS.gene064541 | MS.gene98722 | PPI |
| MS.gene064541 | MS.gene59349 | PPI |
| MS.gene064541 | MS.gene047763 | PPI |
| MS.gene064541 | MS.gene052015 | PPI |
| MS.gene064541 | MS.gene85280 | PPI |
| MS.gene064541 | MS.gene72123 | PPI |
| MS.gene064541 | MS.gene048821 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064541.t1 | MTR_3g054090 | 97.674 | 301 | 7 | 0 | 1 | 301 | 1 | 301 | 0.0 | 602 |
| MS.gene064541.t1 | MTR_6g072020 | 26.752 | 314 | 193 | 9 | 20 | 301 | 18 | 326 | 2.73e-18 | 84.0 |
| MS.gene064541.t1 | MTR_7g104550 | 25.397 | 252 | 155 | 10 | 46 | 286 | 7 | 236 | 2.96e-12 | 66.6 |
| MS.gene064541.t1 | MTR_5g016370 | 24.262 | 305 | 156 | 13 | 23 | 284 | 318 | 590 | 7.37e-12 | 66.2 |
| MS.gene064541.t1 | MTR_4g095058 | 27.234 | 235 | 135 | 10 | 54 | 284 | 371 | 573 | 1.58e-11 | 65.1 |
| MS.gene064541.t1 | MTR_4g095058 | 27.234 | 235 | 135 | 10 | 54 | 284 | 369 | 571 | 1.65e-11 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064541.t1 | AT2G30050 | 84.768 | 302 | 45 | 1 | 1 | 301 | 1 | 302 | 0.0 | 531 |
| MS.gene064541.t1 | AT3G01340 | 81.457 | 302 | 55 | 1 | 1 | 301 | 1 | 302 | 0.0 | 519 |
| MS.gene064541.t1 | AT3G01340 | 81.457 | 302 | 55 | 1 | 1 | 301 | 1 | 302 | 0.0 | 519 |
| MS.gene064541.t1 | AT4G02730 | 27.953 | 254 | 147 | 11 | 46 | 298 | 34 | 252 | 2.25e-13 | 70.1 |
| MS.gene064541.t1 | AT1G64350 | 25.899 | 278 | 165 | 11 | 55 | 301 | 56 | 323 | 2.99e-13 | 69.7 |
| MS.gene064541.t1 | AT2G26060 | 27.092 | 251 | 149 | 12 | 47 | 285 | 12 | 240 | 9.52e-11 | 62.4 |
Find 114 sgRNAs with CRISPR-Local
Find 113 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAGGTGCTCTTGTTGGTTC+AGG | 0.204960 | 3.1:-40807230 | MS.gene064541:CDS |
| TGTTGCTTGGGCACCGAATT+TGG | 0.238572 | 3.1:-40807075 | MS.gene064541:CDS |
| TTGGTGTGACTTCTGTTTCT+TGG | 0.240030 | 3.1:-40807268 | MS.gene064541:CDS |
| CTGGTCACCAAGGGCCTGTT+TGG | 0.241942 | 3.1:-40807562 | MS.gene064541:CDS |
| ATGACGGACGCGTCATTCTT+TGG | 0.264898 | 3.1:-40807487 | MS.gene064541:CDS |
| CCTGTTCAGAAGCTTTGTTC+TGG | 0.295507 | 3.1:-40807197 | MS.gene064541:CDS |
| GAGCTTGGATCCATTCATTC+TGG | 0.309347 | 3.1:+40807453 | None:intergenic |
| GAAACAACAATGTCACATTA+TGG | 0.309368 | 3.1:-40806884 | MS.gene064541:CDS |
| GCACTAGCAATAGTAGATTT+AGG | 0.318347 | 3.1:+40807047 | None:intergenic |
| GTCTTTGACAGGAAATATAT+TGG | 0.319441 | 3.1:-40806919 | MS.gene064541:CDS |
| GATCACACGATTAAGATAAT+TGG | 0.328547 | 3.1:-40807623 | MS.gene064541:CDS |
| CACTTCAGATGCATAATGAT+TGG | 0.332563 | 3.1:-40807106 | MS.gene064541:CDS |
| GCCTGTTTGGGAGGTTGTGT+GGG | 0.350708 | 3.1:-40807549 | MS.gene064541:CDS |
| GTCTGTGAATTCAGTTGCTT+GGG | 0.353330 | 3.1:-40807408 | MS.gene064541:CDS |
| GTTGCTTGGGCACCGAATTT+GGG | 0.365628 | 3.1:-40807074 | MS.gene064541:CDS |
| AAGAATGACGCGTCCGTCAT+AGG | 0.368314 | 3.1:+40807490 | None:intergenic |
| GACCATGATACCCTCCAAAC+AGG | 0.377638 | 3.1:+40806939 | None:intergenic |
| GTGTGGGCTCACCCTAAGTT+TGG | 0.382617 | 3.1:-40807533 | MS.gene064541:CDS |
| TGGTGTGACTTCTGTTTCTT+GGG | 0.389730 | 3.1:-40807267 | MS.gene064541:CDS |
| TGGGCTCCTTCGATGGCGCC+AGG | 0.392172 | 3.1:-40807248 | MS.gene064541:CDS |
| TTGGCAAAGAAGGGGATCAT+TGG | 0.398091 | 3.1:-40806992 | MS.gene064541:CDS |
| GAAACAGAAGTCACACCAAC+CGG | 0.403176 | 3.1:+40807272 | None:intergenic |
| TGCTTGGGCGCCTCATGAGT+TGG | 0.404443 | 3.1:-40807393 | MS.gene064541:CDS |
| ATGGCGCCAGGTGCTCTTGT+TGG | 0.405417 | 3.1:-40807236 | MS.gene064541:CDS |
| TTGGCTTGTGCTTCGTCTGA+TGG | 0.406467 | 3.1:-40807362 | MS.gene064541:CDS |
| GGCCTGTTTGGGAGGTTGTG+TGG | 0.408850 | 3.1:-40807550 | MS.gene064541:CDS |
| TGGTCACCAAGGGCCTGTTT+GGG | 0.409839 | 3.1:-40807561 | MS.gene064541:CDS |
| GCTTGGGCGCCTCATGAGTT+GGG | 0.412397 | 3.1:-40807392 | MS.gene064541:CDS |
| CAGGTGCTCTTGTTGGTTCA+GGG | 0.413499 | 3.1:-40807229 | MS.gene064541:CDS |
| TTCGTCTGATGGGAATTTAT+CGG | 0.414824 | 3.1:-40807351 | MS.gene064541:CDS |
| CGTCTGTGAATTCAGTTGCT+TGG | 0.416920 | 3.1:-40807409 | MS.gene064541:CDS |
| ATGATTTCAAGACCCCTGTT+TGG | 0.434543 | 3.1:-40806953 | MS.gene064541:CDS |
| GCCCACACAACCTCCCAAAC+AGG | 0.434635 | 3.1:+40807548 | None:intergenic |
| TACTATTGCTAGTGCGTCGC+AGG | 0.442514 | 3.1:-40807039 | MS.gene064541:CDS |
| TTATGGAAAGAAGCCGTAGA+TGG | 0.443381 | 3.1:-40806867 | MS.gene064541:CDS |
| TCATGAGTTGGGTCTCTGCT+TGG | 0.444150 | 3.1:-40807381 | MS.gene064541:CDS |
| GATTTAGGAAGTCCCAAATT+CGG | 0.447910 | 3.1:+40807062 | None:intergenic |
| CGTAGATGGGGAATGGCAAC+AGG | 0.449286 | 3.1:-40806853 | MS.gene064541:CDS |
| TGTTTCTTGGGCTCCTTCGA+TGG | 0.450549 | 3.1:-40807255 | MS.gene064541:CDS |
| CCAGAACAAAGCTTCTGAAC+AGG | 0.458908 | 3.1:+40807197 | None:intergenic |
| ATTGGGTTCGTGATGTTGCT+TGG | 0.468374 | 3.1:-40807088 | MS.gene064541:CDS |
| GATGTTGCAATGGATTACTA+TGG | 0.468886 | 3.1:-40807671 | MS.gene064541:CDS |
| ATATGGACCGTTGGCAAAGA+AGG | 0.469148 | 3.1:-40807002 | MS.gene064541:CDS |
| TTGGGTTCGTGATGTTGCTT+GGG | 0.471143 | 3.1:-40807087 | MS.gene064541:CDS |
| TCATTATGCATCTGAAGTGC+AGG | 0.475699 | 3.1:+40807110 | None:intergenic |
| GCGAGAAGGGAACCAAACTT+AGG | 0.477573 | 3.1:+40807521 | None:intergenic |
| CCCCTGTTTGGAGGGTATCA+TGG | 0.478267 | 3.1:-40806941 | MS.gene064541:CDS |
| TGGCTTGTGCTTCGTCTGAT+GGG | 0.479615 | 3.1:-40807361 | MS.gene064541:CDS |
| ACTTCAGATGCATAATGATT+GGG | 0.487890 | 3.1:-40807105 | MS.gene064541:CDS |
| GTTCAGAAGCTTTGTTCTGG+TGG | 0.488323 | 3.1:-40807194 | MS.gene064541:CDS |
| TGGCAAAGAAGGGGATCATT+GGG | 0.489326 | 3.1:-40806991 | MS.gene064541:CDS |
| CTGCAAGGGCAGATGGTGGA+TGG | 0.503412 | 3.1:-40807322 | MS.gene064541:CDS |
| CAGCAATGGACAGTGGAAGA+TGG | 0.510856 | 3.1:-40807141 | MS.gene064541:CDS |
| CGCGTCATTCTTTGGAAGGA+GGG | 0.511398 | 3.1:-40807479 | MS.gene064541:CDS |
| AATATATTGGCTGTGGCTGA+TGG | 0.512420 | 3.1:-40806906 | MS.gene064541:CDS |
| TATGGAAAGAAGCCGTAGAT+GGG | 0.514853 | 3.1:-40806866 | MS.gene064541:CDS |
| AGGAGGGTAACCAGAATGAA+TGG | 0.519620 | 3.1:-40807463 | MS.gene064541:CDS |
| CCTTCTCAGAAGGTTGAAAC+CGG | 0.519832 | 3.1:-40807713 | MS.gene064541:CDS |
| GTGGACAATGTCTTGATGAC+CGG | 0.520259 | 3.1:+40807694 | None:intergenic |
| TCACCAAGGGCCTGTTTGGG+AGG | 0.524084 | 3.1:-40807558 | MS.gene064541:CDS |
| AGGGTATCATGGTCTTTGAC+AGG | 0.524931 | 3.1:-40806930 | MS.gene064541:CDS |
| AGGACGGTAAAGTGATCATA+TGG | 0.528476 | 3.1:-40807019 | MS.gene064541:CDS |
| GAGGCTAGCAACAGCTTCAT+CGG | 0.529147 | 3.1:-40807645 | MS.gene064541:CDS |
| CAGCATCTAGCAACTTTGAC+TGG | 0.538778 | 3.1:-40807581 | MS.gene064541:CDS |
| ATTTCAAGACCCCTGTTTGG+AGG | 0.539676 | 3.1:-40806950 | MS.gene064541:CDS |
| ATGATCCCCTTCTTTGCCAA+CGG | 0.541054 | 3.1:+40806995 | None:intergenic |
| TGGTTGCGATAATACTGTTA+AGG | 0.541340 | 3.1:-40807174 | MS.gene064541:CDS |
| AGAGCACCTGGCGCCATCGA+AGG | 0.542437 | 3.1:+40807242 | None:intergenic |
| CGAGAAGGGAACCAAACTTA+GGG | 0.543581 | 3.1:+40807522 | None:intergenic |
| CAGAAACATGCCTTCTCAGA+AGG | 0.550664 | 3.1:-40807723 | None:intergenic |
| ATTTATCGGTATTTACTGCA+AGG | 0.550845 | 3.1:-40807337 | MS.gene064541:CDS |
| TATGGACCGTTGGCAAAGAA+GGG | 0.551166 | 3.1:-40807001 | MS.gene064541:CDS |
| GACAGGAAATATATTGGCTG+TGG | 0.552846 | 3.1:-40806913 | MS.gene064541:CDS |
| CTGTTGCCATTCCCCATCTA+CGG | 0.553740 | 3.1:+40806854 | None:intergenic |
| GCTCATCAAAGACATGAGCT+TGG | 0.554760 | 3.1:+40807438 | None:intergenic |
| CATAGGAACATGAAGCGAGA+AGG | 0.556637 | 3.1:+40807507 | None:intergenic |
| AGGGGATCATTGGGAAGGCA+AGG | 0.557835 | 3.1:-40806982 | MS.gene064541:CDS |
| GTATTTACTGCAAGGGCAGA+TGG | 0.559270 | 3.1:-40807329 | MS.gene064541:CDS |
| CAACCTCCCAAACAGGCCCT+TGG | 0.559441 | 3.1:+40807555 | None:intergenic |
| CAATGGATTACTATGGAAAG+AGG | 0.559724 | 3.1:-40807664 | MS.gene064541:CDS |
| CTCGCTTCATGTTCCTATGA+CGG | 0.561648 | 3.1:-40807503 | MS.gene064541:CDS |
| CCGGTTTCAACCTTCTGAGA+AGG | 0.569075 | 3.1:+40807713 | None:intergenic |
| TTTCAAGACCCCTGTTTGGA+GGG | 0.570292 | 3.1:-40806949 | MS.gene064541:CDS |
| CATTGTCCACGATGTTGCAA+TGG | 0.571021 | 3.1:-40807681 | MS.gene064541:CDS |
| CGGACGCGTCATTCTTTGGA+AGG | 0.574371 | 3.1:-40807483 | MS.gene064541:CDS |
| CCTGAACCAACAAGAGCACC+TGG | 0.575589 | 3.1:+40807230 | None:intergenic |
| TGCAAGGGCAGATGGTGGAT+GGG | 0.576134 | 3.1:-40807321 | MS.gene064541:CDS |
| ACGCGTCATTCTTTGGAAGG+AGG | 0.581061 | 3.1:-40807480 | MS.gene064541:CDS |
| ACCATGATACCCTCCAAACA+GGG | 0.587238 | 3.1:+40806940 | None:intergenic |
| AAGAAGCCGTAGATGGGGAA+TGG | 0.590067 | 3.1:-40806860 | MS.gene064541:CDS |
| ATAGGAACATGAAGCGAGAA+GGG | 0.592233 | 3.1:+40807508 | None:intergenic |
| AAAGTGATCATATGGACCGT+TGG | 0.593238 | 3.1:-40807011 | MS.gene064541:CDS |
| TTTATCGGTATTTACTGCAA+GGG | 0.593939 | 3.1:-40807336 | MS.gene064541:CDS |
| ATTGCTAGTGCGTCGCAGGA+CGG | 0.600196 | 3.1:-40807035 | MS.gene064541:CDS |
| AAGCAGAGACCCAACTCATG+AGG | 0.602443 | 3.1:+40807383 | None:intergenic |
| GAGGATTGATCAAGCTCACC+CGG | 0.616430 | 3.1:-40807291 | MS.gene064541:CDS |
| CATTATGCATCTGAAGTGCA+GGG | 0.623511 | 3.1:+40807111 | None:intergenic |
| AAGGTGTGGAAGCTCAGCAA+TGG | 0.628171 | 3.1:-40807155 | MS.gene064541:CDS |
| CAACTTTGACTGGTCACCAA+GGG | 0.628577 | 3.1:-40807571 | MS.gene064541:CDS |
| ATTGATCAAGCTCACCCGGT+TGG | 0.635140 | 3.1:-40807287 | MS.gene064541:CDS |
| AAACAGAAGTCACACCAACC+GGG | 0.636764 | 3.1:+40807273 | None:intergenic |
| ATGGACCGTTGGCAAAGAAG+GGG | 0.639822 | 3.1:-40807000 | MS.gene064541:CDS |
| TTTACTGCAAGGGCAGATGG+TGG | 0.642065 | 3.1:-40807326 | MS.gene064541:CDS |
| ATGGAAAGAAGCCGTAGATG+GGG | 0.650539 | 3.1:-40806865 | MS.gene064541:CDS |
| GCAACTTTGACTGGTCACCA+AGG | 0.656777 | 3.1:-40807572 | MS.gene064541:CDS |
| GGAAGCTCAGCAATGGACAG+TGG | 0.662826 | 3.1:-40807148 | MS.gene064541:CDS |
| GCGATAATACTGTTAAGGTG+TGG | 0.664994 | 3.1:-40807169 | MS.gene064541:CDS |
| AAAGAAGGGGATCATTGGGA+AGG | 0.667803 | 3.1:-40806987 | MS.gene064541:CDS |
| CAAAGTTGCTAGATGCTGAG+AGG | 0.674911 | 3.1:+40807586 | None:intergenic |
| ATGGTGGATGGGACACCTCG+AGG | 0.682025 | 3.1:-40807310 | MS.gene064541:CDS |
| AGTAATCCATTGCAACATCG+TGG | 0.685605 | 3.1:+40807675 | None:intergenic |
| ATGGCAACAGGTGACAACAG+TGG | 0.686621 | 3.1:-40806841 | MS.gene064541:CDS |
| CCATGATACCCTCCAAACAG+GGG | 0.724647 | 3.1:+40806941 | None:intergenic |
| GTGAGCTTGATCAATCCTCG+AGG | 0.725816 | 3.1:+40807295 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ACTTCAGATGCATAATGATT+GGG | - | chr3.1:40807444-40807463 | MS.gene064541:CDS | 30.0% | |
| ATTTATCGGTATTTACTGCA+AGG | - | chr3.1:40807212-40807231 | MS.gene064541:CDS | 30.0% | |
| GAAACAACAATGTCACATTA+TGG | - | chr3.1:40807665-40807684 | MS.gene064541:CDS | 30.0% | |
| GATCACACGATTAAGATAAT+TGG | - | chr3.1:40806926-40806945 | MS.gene064541:CDS | 30.0% | |
| GTCTTTGACAGGAAATATAT+TGG | - | chr3.1:40807630-40807649 | MS.gene064541:CDS | 30.0% | |
| TTTATCGGTATTTACTGCAA+GGG | - | chr3.1:40807213-40807232 | MS.gene064541:CDS | 30.0% | |
| CACTTCAGATGCATAATGAT+TGG | - | chr3.1:40807443-40807462 | MS.gene064541:CDS | 35.0% | |
| GATTTAGGAAGTCCCAAATT+CGG | + | chr3.1:40807490-40807509 | None:intergenic | 35.0% | |
| GCACTAGCAATAGTAGATTT+AGG | + | chr3.1:40807505-40807524 | None:intergenic | 35.0% | |
| TGGTTGCGATAATACTGTTA+AGG | - | chr3.1:40807375-40807394 | MS.gene064541:CDS | 35.0% | |
| TTCGTCTGATGGGAATTTAT+CGG | - | chr3.1:40807198-40807217 | MS.gene064541:CDS | 35.0% | |
| !! | CAATGGATTACTATGGAAAG+AGG | - | chr3.1:40806885-40806904 | MS.gene064541:CDS | 35.0% |
| !! | GATGTTGCAATGGATTACTA+TGG | - | chr3.1:40806878-40806897 | MS.gene064541:CDS | 35.0% |
| AAAGTGATCATATGGACCGT+TGG | - | chr3.1:40807538-40807557 | MS.gene064541:CDS | 40.0% | |
| AGGACGGTAAAGTGATCATA+TGG | - | chr3.1:40807530-40807549 | MS.gene064541:CDS | 40.0% | |
| AGTAATCCATTGCAACATCG+TGG | + | chr3.1:40806877-40806896 | None:intergenic | 40.0% | |
| ATAGGAACATGAAGCGAGAA+GGG | + | chr3.1:40807044-40807063 | None:intergenic | 40.0% | |
| ATGATTTCAAGACCCCTGTT+TGG | - | chr3.1:40807596-40807615 | MS.gene064541:CDS | 40.0% | |
| GCGATAATACTGTTAAGGTG+TGG | - | chr3.1:40807380-40807399 | MS.gene064541:CDS | 40.0% | |
| GTCTGTGAATTCAGTTGCTT+GGG | - | chr3.1:40807141-40807160 | MS.gene064541:CDS | 40.0% | |
| TATGGAAAGAAGCCGTAGAT+GGG | - | chr3.1:40807683-40807702 | MS.gene064541:CDS | 40.0% | |
| TTATGGAAAGAAGCCGTAGA+TGG | - | chr3.1:40807682-40807701 | MS.gene064541:CDS | 40.0% | |
| ! | AATATATTGGCTGTGGCTGA+TGG | - | chr3.1:40807643-40807662 | MS.gene064541:CDS | 40.0% |
| ! | CATTATGCATCTGAAGTGCA+GGG | + | chr3.1:40807441-40807460 | None:intergenic | 40.0% |
| ! | GACAGGAAATATATTGGCTG+TGG | - | chr3.1:40807636-40807655 | MS.gene064541:CDS | 40.0% |
| ! | TCATTATGCATCTGAAGTGC+AGG | + | chr3.1:40807442-40807461 | None:intergenic | 40.0% |
| ! | TGGTGTGACTTCTGTTTCTT+GGG | - | chr3.1:40807282-40807301 | MS.gene064541:CDS | 40.0% |
| ! | TTGGTGTGACTTCTGTTTCT+TGG | - | chr3.1:40807281-40807300 | MS.gene064541:CDS | 40.0% |
| AAACAGAAGTCACACCAACC+GGG | + | chr3.1:40807279-40807298 | None:intergenic | 45.0% | |
| AAAGAAGGGGATCATTGGGA+AGG | - | chr3.1:40807562-40807581 | MS.gene064541:CDS | 45.0% | |
| ACCATGATACCCTCCAAACA+GGG | + | chr3.1:40807612-40807631 | None:intergenic | 45.0% | |
| AGGAGGGTAACCAGAATGAA+TGG | - | chr3.1:40807086-40807105 | MS.gene064541:CDS | 45.0% | |
| ATATGGACCGTTGGCAAAGA+AGG | - | chr3.1:40807547-40807566 | MS.gene064541:CDS | 45.0% | |
| ATGATCCCCTTCTTTGCCAA+CGG | + | chr3.1:40807557-40807576 | None:intergenic | 45.0% | |
| ATGGAAAGAAGCCGTAGATG+GGG | - | chr3.1:40807684-40807703 | MS.gene064541:CDS | 45.0% | |
| ATTGGGTTCGTGATGTTGCT+TGG | - | chr3.1:40807461-40807480 | MS.gene064541:CDS | 45.0% | |
| ATTTCAAGACCCCTGTTTGG+AGG | - | chr3.1:40807599-40807618 | MS.gene064541:CDS | 45.0% | |
| CAAAGTTGCTAGATGCTGAG+AGG | + | chr3.1:40806966-40806985 | None:intergenic | 45.0% | |
| CAGCATCTAGCAACTTTGAC+TGG | - | chr3.1:40806968-40806987 | MS.gene064541:CDS | 45.0% | |
| CATAGGAACATGAAGCGAGA+AGG | + | chr3.1:40807045-40807064 | None:intergenic | 45.0% | |
| CATTGTCCACGATGTTGCAA+TGG | - | chr3.1:40806868-40806887 | MS.gene064541:CDS | 45.0% | |
| CCAGAACAAAGCTTCTGAAC+AGG | + | chr3.1:40807355-40807374 | None:intergenic | 45.0% | |
| CCTTCTCAGAAGGTTGAAAC+CGG | - | chr3.1:40806836-40806855 | MS.gene064541:CDS | 45.0% | |
| CGAGAAGGGAACCAAACTTA+GGG | + | chr3.1:40807030-40807049 | None:intergenic | 45.0% | |
| CGTCTGTGAATTCAGTTGCT+TGG | - | chr3.1:40807140-40807159 | MS.gene064541:CDS | 45.0% | |
| CTCGCTTCATGTTCCTATGA+CGG | - | chr3.1:40807046-40807065 | MS.gene064541:CDS | 45.0% | |
| GAAACAGAAGTCACACCAAC+CGG | + | chr3.1:40807280-40807299 | None:intergenic | 45.0% | |
| GAGCTTGGATCCATTCATTC+TGG | + | chr3.1:40807099-40807118 | None:intergenic | 45.0% | |
| GCTCATCAAAGACATGAGCT+TGG | + | chr3.1:40807114-40807133 | None:intergenic | 45.0% | |
| GTATTTACTGCAAGGGCAGA+TGG | - | chr3.1:40807220-40807239 | MS.gene064541:CDS | 45.0% | |
| TATGGACCGTTGGCAAAGAA+GGG | - | chr3.1:40807548-40807567 | MS.gene064541:CDS | 45.0% | |
| TGGCAAAGAAGGGGATCATT+GGG | - | chr3.1:40807558-40807577 | MS.gene064541:CDS | 45.0% | |
| TTGGCAAAGAAGGGGATCAT+TGG | - | chr3.1:40807557-40807576 | MS.gene064541:CDS | 45.0% | |
| TTTCAAGACCCCTGTTTGGA+GGG | - | chr3.1:40807600-40807619 | MS.gene064541:CDS | 45.0% | |
| ! | AGGGTATCATGGTCTTTGAC+AGG | - | chr3.1:40807619-40807638 | MS.gene064541:CDS | 45.0% |
| ! | CAACTTTGACTGGTCACCAA+GGG | - | chr3.1:40806978-40806997 | MS.gene064541:CDS | 45.0% |
| ! | GTGGACAATGTCTTGATGAC+CGG | + | chr3.1:40806858-40806877 | None:intergenic | 45.0% |
| ! | TTGGGTTCGTGATGTTGCTT+GGG | - | chr3.1:40807462-40807481 | MS.gene064541:CDS | 45.0% |
| !! | CCTGTTCAGAAGCTTTGTTC+TGG | - | chr3.1:40807352-40807371 | MS.gene064541:CDS | 45.0% |
| !! | GTTCAGAAGCTTTGTTCTGG+TGG | - | chr3.1:40807355-40807374 | MS.gene064541:CDS | 45.0% |
| AAGAAGCCGTAGATGGGGAA+TGG | - | chr3.1:40807689-40807708 | MS.gene064541:CDS | 50.0% | |
| AAGAATGACGCGTCCGTCAT+AGG | + | chr3.1:40807062-40807081 | None:intergenic | 50.0% | |
| AAGCAGAGACCCAACTCATG+AGG | + | chr3.1:40807169-40807188 | None:intergenic | 50.0% | |
| AAGGTGTGGAAGCTCAGCAA+TGG | - | chr3.1:40807394-40807413 | MS.gene064541:CDS | 50.0% | |
| ATGGACCGTTGGCAAAGAAG+GGG | - | chr3.1:40807549-40807568 | MS.gene064541:CDS | 50.0% | |
| ATGGCAACAGGTGACAACAG+TGG | - | chr3.1:40807708-40807727 | MS.gene064541:CDS | 50.0% | |
| ATTGATCAAGCTCACCCGGT+TGG | - | chr3.1:40807262-40807281 | MS.gene064541:CDS | 50.0% | |
| CAGCAATGGACAGTGGAAGA+TGG | - | chr3.1:40807408-40807427 | MS.gene064541:CDS | 50.0% | |
| CCATGATACCCTCCAAACAG+GGG | + | chr3.1:40807611-40807630 | None:intergenic | 50.0% | |
| CTGTTGCCATTCCCCATCTA+CGG | + | chr3.1:40807698-40807717 | None:intergenic | 50.0% | |
| GACCATGATACCCTCCAAAC+AGG | + | chr3.1:40807613-40807632 | None:intergenic | 50.0% | |
| GAGGATTGATCAAGCTCACC+CGG | - | chr3.1:40807258-40807277 | MS.gene064541:CDS | 50.0% | |
| GAGGCTAGCAACAGCTTCAT+CGG | - | chr3.1:40806904-40806923 | MS.gene064541:CDS | 50.0% | |
| GCGAGAAGGGAACCAAACTT+AGG | + | chr3.1:40807031-40807050 | None:intergenic | 50.0% | |
| GTGAGCTTGATCAATCCTCG+AGG | + | chr3.1:40807257-40807276 | None:intergenic | 50.0% | |
| TACTATTGCTAGTGCGTCGC+AGG | - | chr3.1:40807510-40807529 | MS.gene064541:CDS | 50.0% | |
| TGTTTCTTGGGCTCCTTCGA+TGG | - | chr3.1:40807294-40807313 | MS.gene064541:CDS | 50.0% | |
| TTTACTGCAAGGGCAGATGG+TGG | - | chr3.1:40807223-40807242 | MS.gene064541:CDS | 50.0% | |
| ! | ACGCGTCATTCTTTGGAAGG+AGG | - | chr3.1:40807069-40807088 | MS.gene064541:CDS | 50.0% |
| ! | CCGGTTTCAACCTTCTGAGA+AGG | + | chr3.1:40806839-40806858 | None:intergenic | 50.0% |
| ! | CGCGTCATTCTTTGGAAGGA+GGG | - | chr3.1:40807070-40807089 | MS.gene064541:CDS | 50.0% |
| ! | GCAACTTTGACTGGTCACCA+AGG | - | chr3.1:40806977-40806996 | MS.gene064541:CDS | 50.0% |
| ! | TCATGAGTTGGGTCTCTGCT+TGG | - | chr3.1:40807168-40807187 | MS.gene064541:CDS | 50.0% |
| ! | TGGCTTGTGCTTCGTCTGAT+GGG | - | chr3.1:40807188-40807207 | MS.gene064541:CDS | 50.0% |
| !! | ATGACGGACGCGTCATTCTT+TGG | - | chr3.1:40807062-40807081 | MS.gene064541:CDS | 50.0% |
| !! | CAGGTGCTCTTGTTGGTTCA+GGG | - | chr3.1:40807320-40807339 | MS.gene064541:CDS | 50.0% |
| !! | GTTGCTTGGGCACCGAATTT+GGG | - | chr3.1:40807475-40807494 | MS.gene064541:CDS | 50.0% |
| !! | TGTTGCTTGGGCACCGAATT+TGG | - | chr3.1:40807474-40807493 | MS.gene064541:CDS | 50.0% |
| !! | TTGGCTTGTGCTTCGTCTGA+TGG | - | chr3.1:40807187-40807206 | MS.gene064541:CDS | 50.0% |
| AGGGGATCATTGGGAAGGCA+AGG | - | chr3.1:40807567-40807586 | MS.gene064541:CDS | 55.0% | |
| ATTGCTAGTGCGTCGCAGGA+CGG | - | chr3.1:40807514-40807533 | MS.gene064541:CDS | 55.0% | |
| CGGACGCGTCATTCTTTGGA+AGG | - | chr3.1:40807066-40807085 | MS.gene064541:CDS | 55.0% | |
| CGTAGATGGGGAATGGCAAC+AGG | - | chr3.1:40807696-40807715 | MS.gene064541:CDS | 55.0% | |
| GCCTGTTTGGGAGGTTGTGT+GGG | - | chr3.1:40807000-40807019 | MS.gene064541:CDS | 55.0% | |
| GGAAGCTCAGCAATGGACAG+TGG | - | chr3.1:40807401-40807420 | MS.gene064541:CDS | 55.0% | |
| GTGTGGGCTCACCCTAAGTT+TGG | - | chr3.1:40807016-40807035 | MS.gene064541:CDS | 55.0% | |
| TGGTCACCAAGGGCCTGTTT+GGG | - | chr3.1:40806988-40807007 | MS.gene064541:CDS | 55.0% | |
| !! | CCAGGTGCTCTTGTTGGTTC+AGG | - | chr3.1:40807319-40807338 | MS.gene064541:CDS | 55.0% |
| !! | CCCCTGTTTGGAGGGTATCA+TGG | - | chr3.1:40807608-40807627 | MS.gene064541:CDS | 55.0% |
| !! | CCTGAACCAACAAGAGCACC+TGG | + | chr3.1:40807322-40807341 | None:intergenic | 55.0% |
| !! | TGCAAGGGCAGATGGTGGAT+GGG | - | chr3.1:40807228-40807247 | MS.gene064541:CDS | 55.0% |
| ATGGCGCCAGGTGCTCTTGT+TGG | - | chr3.1:40807313-40807332 | MS.gene064541:CDS | 60.0% | |
| CAACCTCCCAAACAGGCCCT+TGG | + | chr3.1:40806997-40807016 | None:intergenic | 60.0% | |
| CTGGTCACCAAGGGCCTGTT+TGG | - | chr3.1:40806987-40807006 | MS.gene064541:CDS | 60.0% | |
| GCCCACACAACCTCCCAAAC+AGG | + | chr3.1:40807004-40807023 | None:intergenic | 60.0% | |
| GCTTGGGCGCCTCATGAGTT+GGG | - | chr3.1:40807157-40807176 | MS.gene064541:CDS | 60.0% | |
| GGCCTGTTTGGGAGGTTGTG+TGG | - | chr3.1:40806999-40807018 | MS.gene064541:CDS | 60.0% | |
| TCACCAAGGGCCTGTTTGGG+AGG | - | chr3.1:40806991-40807010 | MS.gene064541:CDS | 60.0% | |
| TGCTTGGGCGCCTCATGAGT+TGG | - | chr3.1:40807156-40807175 | MS.gene064541:CDS | 60.0% | |
| !! | ATGGTGGATGGGACACCTCG+AGG | - | chr3.1:40807239-40807258 | MS.gene064541:CDS | 60.0% |
| !! | CTGCAAGGGCAGATGGTGGA+TGG | - | chr3.1:40807227-40807246 | MS.gene064541:CDS | 60.0% |
| ! | AGAGCACCTGGCGCCATCGA+AGG | + | chr3.1:40807310-40807329 | None:intergenic | 65.0% |
| TGGGCTCCTTCGATGGCGCC+AGG | - | chr3.1:40807301-40807320 | MS.gene064541:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 40806833 | 40807738 | 40806833 | ID=MS.gene064541 |
| chr3.1 | mRNA | 40806833 | 40807738 | 40806833 | ID=MS.gene064541.t1;Parent=MS.gene064541 |
| chr3.1 | exon | 40806833 | 40807738 | 40806833 | ID=MS.gene064541.t1.exon1;Parent=MS.gene064541.t1 |
| chr3.1 | CDS | 40806833 | 40807738 | 40806833 | ID=cds.MS.gene064541.t1;Parent=MS.gene064541.t1 |
| Gene Sequence |
| Protein sequence |
