Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70974.t1 | GAU45500.1 | 98.7 | 301 | 4 | 0 | 1 | 301 | 1 | 301 | 4.30E-136 | 494.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70974.t1 | O64740 | 79.1 | 302 | 62 | 1 | 1 | 301 | 1 | 302 | 1.2e-97 | 357.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70974.t1 | A0A2Z6P822 | 98.7 | 301 | 4 | 0 | 1 | 301 | 1 | 301 | 3.1e-136 | 494.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene030377 | MS.gene70974 | PPI |
| MS.gene98722 | MS.gene70974 | PPI |
| MS.gene052015 | MS.gene70974 | PPI |
| MS.gene032173 | MS.gene70974 | PPI |
| MS.gene85280 | MS.gene70974 | PPI |
| MS.gene70974 | MS.gene035806 | PPI |
| MS.gene064541 | MS.gene70974 | PPI |
| MS.gene73118 | MS.gene70974 | PPI |
| MS.gene047763 | MS.gene70974 | PPI |
| MS.gene70974 | MS.gene010482 | PPI |
| MS.gene70974 | MS.gene73118 | PPI |
| MS.gene70974 | MS.gene98722 | PPI |
| MS.gene70974 | MS.gene59349 | PPI |
| MS.gene70974 | MS.gene72123 | PPI |
| MS.gene70974 | MS.gene048821 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70974.t1 | MTR_3g054090 | 98.007 | 301 | 6 | 0 | 1 | 301 | 1 | 301 | 0.0 | 603 |
| MS.gene70974.t1 | MTR_6g072020 | 26.752 | 314 | 193 | 9 | 20 | 301 | 18 | 326 | 3.39e-18 | 83.6 |
| MS.gene70974.t1 | MTR_7g104550 | 25.397 | 252 | 155 | 10 | 46 | 286 | 7 | 236 | 2.67e-12 | 67.0 |
| MS.gene70974.t1 | MTR_5g016370 | 24.262 | 305 | 156 | 13 | 23 | 284 | 318 | 590 | 7.37e-12 | 66.2 |
| MS.gene70974.t1 | MTR_4g095058 | 27.234 | 235 | 135 | 10 | 54 | 284 | 371 | 573 | 1.54e-11 | 65.1 |
| MS.gene70974.t1 | MTR_4g095058 | 27.234 | 235 | 135 | 10 | 54 | 284 | 369 | 571 | 1.59e-11 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70974.t1 | AT2G30050 | 85.099 | 302 | 44 | 1 | 1 | 301 | 1 | 302 | 0.0 | 532 |
| MS.gene70974.t1 | AT3G01340 | 81.788 | 302 | 54 | 1 | 1 | 301 | 1 | 302 | 0.0 | 520 |
| MS.gene70974.t1 | AT3G01340 | 81.788 | 302 | 54 | 1 | 1 | 301 | 1 | 302 | 0.0 | 520 |
| MS.gene70974.t1 | AT1G64350 | 26.007 | 273 | 161 | 11 | 60 | 301 | 61 | 323 | 4.75e-13 | 68.9 |
| MS.gene70974.t1 | AT4G02730 | 27.559 | 254 | 148 | 11 | 46 | 298 | 34 | 252 | 5.36e-13 | 68.9 |
| MS.gene70974.t1 | AT2G26060 | 27.092 | 251 | 149 | 12 | 47 | 285 | 12 | 240 | 7.91e-11 | 62.4 |
Find 114 sgRNAs with CRISPR-Local
Find 113 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAGGTGCTCTTGTTGGTTC+AGG | 0.204960 | 3.3:-44276839 | MS.gene70974:CDS |
| TGTTGCTTGGGCACCGAATT+TGG | 0.238572 | 3.3:-44276684 | MS.gene70974:CDS |
| TTGGTGTGACTTCTGTTTCT+TGG | 0.240030 | 3.3:-44276877 | MS.gene70974:CDS |
| CTGGTCACCAAGGGCCTGTT+TGG | 0.241942 | 3.3:-44277171 | MS.gene70974:CDS |
| ATGACGGACGCGTCATTCTT+TGG | 0.264898 | 3.3:-44277096 | MS.gene70974:CDS |
| CCTGTTCAGAAGCTTTGTTC+TGG | 0.295507 | 3.3:-44276806 | MS.gene70974:CDS |
| GAGCTTGGATCCATTCATTC+TGG | 0.309347 | 3.3:+44277062 | None:intergenic |
| GAAACAACAATGTCACATTA+TGG | 0.309368 | 3.3:-44276493 | MS.gene70974:CDS |
| GCACTAGCAATAGTAGATTT+AGG | 0.318347 | 3.3:+44276656 | None:intergenic |
| GTCTTTGACAGGAAATATAT+TGG | 0.319441 | 3.3:-44276528 | MS.gene70974:CDS |
| GATCACACGATTAAGATAAT+TGG | 0.328547 | 3.3:-44277232 | MS.gene70974:CDS |
| CACTTCAGATGCATAATGAT+TGG | 0.332563 | 3.3:-44276715 | MS.gene70974:CDS |
| GCCTGTTTGGGAGGTTGTGT+GGG | 0.350708 | 3.3:-44277158 | MS.gene70974:CDS |
| GTCTGTGAATTCAGTTGCTT+GGG | 0.353330 | 3.3:-44277017 | MS.gene70974:CDS |
| GTTGCTTGGGCACCGAATTT+GGG | 0.365628 | 3.3:-44276683 | MS.gene70974:CDS |
| AAGAATGACGCGTCCGTCAT+AGG | 0.368314 | 3.3:+44277099 | None:intergenic |
| GACCATGATACCCTCCAAAC+AGG | 0.377638 | 3.3:+44276548 | None:intergenic |
| GTGTGGGCTCACCCTAAGTT+TGG | 0.382617 | 3.3:-44277142 | MS.gene70974:CDS |
| TGGTGTGACTTCTGTTTCTT+GGG | 0.389730 | 3.3:-44276876 | MS.gene70974:CDS |
| TGGGCTCCTTCGATGGCGCC+AGG | 0.392172 | 3.3:-44276857 | MS.gene70974:CDS |
| TTGGCAAAGAAGGGGATCAT+TGG | 0.398091 | 3.3:-44276601 | MS.gene70974:CDS |
| GAAACAGAAGTCACACCAAC+CGG | 0.403176 | 3.3:+44276881 | None:intergenic |
| TGCTTGGGCGCCTCATGAGT+TGG | 0.404443 | 3.3:-44277002 | MS.gene70974:CDS |
| ATGGCGCCAGGTGCTCTTGT+TGG | 0.405417 | 3.3:-44276845 | MS.gene70974:CDS |
| TTGGCTTGTGCTTCGTCTGA+TGG | 0.406467 | 3.3:-44276971 | MS.gene70974:CDS |
| GGCCTGTTTGGGAGGTTGTG+TGG | 0.408850 | 3.3:-44277159 | MS.gene70974:CDS |
| TGGTCACCAAGGGCCTGTTT+GGG | 0.409839 | 3.3:-44277170 | MS.gene70974:CDS |
| GCTTGGGCGCCTCATGAGTT+GGG | 0.412397 | 3.3:-44277001 | MS.gene70974:CDS |
| CAGGTGCTCTTGTTGGTTCA+GGG | 0.413499 | 3.3:-44276838 | MS.gene70974:CDS |
| CGTCTGTGAATTCAGTTGCT+TGG | 0.416920 | 3.3:-44277018 | MS.gene70974:CDS |
| ATGATTTCAAGACCCCTGTT+TGG | 0.434543 | 3.3:-44276562 | MS.gene70974:CDS |
| GCCCACACAACCTCCCAAAC+AGG | 0.434635 | 3.3:+44277157 | None:intergenic |
| TACTATTGCTAGTGCGTCGC+AGG | 0.442514 | 3.3:-44276648 | MS.gene70974:CDS |
| TTATGGAAAGAAGCCGTAGA+TGG | 0.443381 | 3.3:-44276476 | MS.gene70974:CDS |
| TCATGAGTTGGGTCTCTGCT+TGG | 0.444150 | 3.3:-44276990 | MS.gene70974:CDS |
| GATTTAGGAAGTCCCAAATT+CGG | 0.447910 | 3.3:+44276671 | None:intergenic |
| CGTAGATGGGGAATGGCAAC+AGG | 0.449286 | 3.3:-44276462 | MS.gene70974:CDS |
| TGTTTCTTGGGCTCCTTCGA+TGG | 0.450549 | 3.3:-44276864 | MS.gene70974:CDS |
| CCAGAACAAAGCTTCTGAAC+AGG | 0.458908 | 3.3:+44276806 | None:intergenic |
| ATTGGGTTCGTGATGTTGCT+TGG | 0.468374 | 3.3:-44276697 | MS.gene70974:CDS |
| GATGTTGCAATGGATTACTA+TGG | 0.468886 | 3.3:-44277280 | MS.gene70974:CDS |
| ATATGGACCGTTGGCAAAGA+AGG | 0.469148 | 3.3:-44276611 | MS.gene70974:CDS |
| TTGGGTTCGTGATGTTGCTT+GGG | 0.471143 | 3.3:-44276696 | MS.gene70974:CDS |
| TCATTATGCATCTGAAGTGC+AGG | 0.475699 | 3.3:+44276719 | None:intergenic |
| GCGAGAAGGGAACCAAACTT+AGG | 0.477573 | 3.3:+44277130 | None:intergenic |
| CCCCTGTTTGGAGGGTATCA+TGG | 0.478267 | 3.3:-44276550 | MS.gene70974:CDS |
| TGGCTTGTGCTTCGTCTGAT+GGG | 0.479615 | 3.3:-44276970 | MS.gene70974:CDS |
| ACTTCAGATGCATAATGATT+GGG | 0.487890 | 3.3:-44276714 | MS.gene70974:CDS |
| GTTCAGAAGCTTTGTTCTGG+TGG | 0.488323 | 3.3:-44276803 | MS.gene70974:CDS |
| TGGCAAAGAAGGGGATCATT+GGG | 0.489326 | 3.3:-44276600 | MS.gene70974:CDS |
| CTGCAAGGGCAGATGGTGGA+TGG | 0.503412 | 3.3:-44276931 | MS.gene70974:CDS |
| CAGCAATGGACAGTGGAAGA+TGG | 0.510856 | 3.3:-44276750 | MS.gene70974:CDS |
| CGCGTCATTCTTTGGAAGGA+GGG | 0.511398 | 3.3:-44277088 | MS.gene70974:CDS |
| AATATATTGGCTGTGGCTGA+TGG | 0.512420 | 3.3:-44276515 | MS.gene70974:CDS |
| TATGGAAAGAAGCCGTAGAT+GGG | 0.514853 | 3.3:-44276475 | MS.gene70974:CDS |
| AGGAGGGTAACCAGAATGAA+TGG | 0.519620 | 3.3:-44277072 | MS.gene70974:CDS |
| CCTTCTCAGAAGGTTGAAAC+CGG | 0.519832 | 3.3:-44277322 | MS.gene70974:CDS |
| GTGGACAATGTCTTGATGAC+CGG | 0.520259 | 3.3:+44277303 | None:intergenic |
| TCACCAAGGGCCTGTTTGGG+AGG | 0.524084 | 3.3:-44277167 | MS.gene70974:CDS |
| AGGGTATCATGGTCTTTGAC+AGG | 0.524931 | 3.3:-44276539 | MS.gene70974:CDS |
| AGGACGGTAAAGTGATCATA+TGG | 0.528476 | 3.3:-44276628 | MS.gene70974:CDS |
| GAGGCTAGCAACAGCTTCAT+CGG | 0.529147 | 3.3:-44277254 | MS.gene70974:CDS |
| CAGCATCTAGCAACTTTGAC+TGG | 0.538778 | 3.3:-44277190 | MS.gene70974:CDS |
| ATTTCAAGACCCCTGTTTGG+AGG | 0.539676 | 3.3:-44276559 | MS.gene70974:CDS |
| ATGATCCCCTTCTTTGCCAA+CGG | 0.541054 | 3.3:+44276604 | None:intergenic |
| TGGTTGCGATAATACTGTTA+AGG | 0.541340 | 3.3:-44276783 | MS.gene70974:CDS |
| AGAGCACCTGGCGCCATCGA+AGG | 0.542437 | 3.3:+44276851 | None:intergenic |
| CGAGAAGGGAACCAAACTTA+GGG | 0.543581 | 3.3:+44277131 | None:intergenic |
| CAGAAACATGCCTTCTCAGA+AGG | 0.550664 | 3.3:-44277332 | None:intergenic |
| TATGGACCGTTGGCAAAGAA+GGG | 0.551166 | 3.3:-44276610 | MS.gene70974:CDS |
| GACAGGAAATATATTGGCTG+TGG | 0.552846 | 3.3:-44276522 | MS.gene70974:CDS |
| CTGTTGCCATTCCCCATCTA+CGG | 0.553740 | 3.3:+44276463 | None:intergenic |
| GCTCATCAAAGACATGAGCT+TGG | 0.554760 | 3.3:+44277047 | None:intergenic |
| CATAGGAACATGAAGCGAGA+AGG | 0.556637 | 3.3:+44277116 | None:intergenic |
| AGGGGATCATTGGGAAGGCA+AGG | 0.557835 | 3.3:-44276591 | MS.gene70974:CDS |
| GTATTTACTGCAAGGGCAGA+TGG | 0.559270 | 3.3:-44276938 | MS.gene70974:CDS |
| CAACCTCCCAAACAGGCCCT+TGG | 0.559441 | 3.3:+44277164 | None:intergenic |
| CAATGGATTACTATGGAAAG+AGG | 0.559724 | 3.3:-44277273 | MS.gene70974:CDS |
| CTCGCTTCATGTTCCTATGA+CGG | 0.561648 | 3.3:-44277112 | MS.gene70974:CDS |
| CCGGTTTCAACCTTCTGAGA+AGG | 0.569075 | 3.3:+44277322 | None:intergenic |
| TTTCAAGACCCCTGTTTGGA+GGG | 0.570292 | 3.3:-44276558 | MS.gene70974:CDS |
| CATTGTCCACGATGTTGCAA+TGG | 0.571021 | 3.3:-44277290 | MS.gene70974:CDS |
| ATATATCGGTATTTACTGCA+AGG | 0.573760 | 3.3:-44276946 | MS.gene70974:CDS |
| CGGACGCGTCATTCTTTGGA+AGG | 0.574371 | 3.3:-44277092 | MS.gene70974:CDS |
| CCTGAACCAACAAGAGCACC+TGG | 0.575589 | 3.3:+44276839 | None:intergenic |
| TGCAAGGGCAGATGGTGGAT+GGG | 0.576134 | 3.3:-44276930 | MS.gene70974:CDS |
| ACGCGTCATTCTTTGGAAGG+AGG | 0.581061 | 3.3:-44277089 | MS.gene70974:CDS |
| ACCATGATACCCTCCAAACA+GGG | 0.587238 | 3.3:+44276549 | None:intergenic |
| AAGAAGCCGTAGATGGGGAA+TGG | 0.590067 | 3.3:-44276469 | MS.gene70974:CDS |
| TTCGTCTGATGGGAATATAT+CGG | 0.590339 | 3.3:-44276960 | MS.gene70974:CDS |
| ATAGGAACATGAAGCGAGAA+GGG | 0.592233 | 3.3:+44277117 | None:intergenic |
| AAAGTGATCATATGGACCGT+TGG | 0.593238 | 3.3:-44276620 | MS.gene70974:CDS |
| ATTGCTAGTGCGTCGCAGGA+CGG | 0.600196 | 3.3:-44276644 | MS.gene70974:CDS |
| AAGCAGAGACCCAACTCATG+AGG | 0.602443 | 3.3:+44276992 | None:intergenic |
| GAGGATTGATCAAGCTCACC+CGG | 0.616430 | 3.3:-44276900 | MS.gene70974:CDS |
| CATTATGCATCTGAAGTGCA+GGG | 0.623511 | 3.3:+44276720 | None:intergenic |
| TATATCGGTATTTACTGCAA+GGG | 0.626484 | 3.3:-44276945 | MS.gene70974:CDS |
| AAGGTGTGGAAGCTCAGCAA+TGG | 0.628171 | 3.3:-44276764 | MS.gene70974:CDS |
| CAACTTTGACTGGTCACCAA+GGG | 0.628577 | 3.3:-44277180 | MS.gene70974:CDS |
| ATTGATCAAGCTCACCCGGT+TGG | 0.635140 | 3.3:-44276896 | MS.gene70974:CDS |
| AAACAGAAGTCACACCAACC+GGG | 0.636764 | 3.3:+44276882 | None:intergenic |
| ATGGACCGTTGGCAAAGAAG+GGG | 0.639822 | 3.3:-44276609 | MS.gene70974:CDS |
| TTTACTGCAAGGGCAGATGG+TGG | 0.642065 | 3.3:-44276935 | MS.gene70974:CDS |
| ATGGAAAGAAGCCGTAGATG+GGG | 0.650539 | 3.3:-44276474 | MS.gene70974:CDS |
| GCAACTTTGACTGGTCACCA+AGG | 0.656777 | 3.3:-44277181 | MS.gene70974:CDS |
| GGAAGCTCAGCAATGGACAG+TGG | 0.662826 | 3.3:-44276757 | MS.gene70974:CDS |
| GCGATAATACTGTTAAGGTG+TGG | 0.664994 | 3.3:-44276778 | MS.gene70974:CDS |
| AAAGAAGGGGATCATTGGGA+AGG | 0.667803 | 3.3:-44276596 | MS.gene70974:CDS |
| CAAAGTTGCTAGATGCTGAG+AGG | 0.674911 | 3.3:+44277195 | None:intergenic |
| ATGGTGGATGGGACACCTCG+AGG | 0.682025 | 3.3:-44276919 | MS.gene70974:CDS |
| AGTAATCCATTGCAACATCG+TGG | 0.685605 | 3.3:+44277284 | None:intergenic |
| ATGGCAACAGGTGACAACAG+TGG | 0.686621 | 3.3:-44276450 | MS.gene70974:CDS |
| CCATGATACCCTCCAAACAG+GGG | 0.724647 | 3.3:+44276550 | None:intergenic |
| GTGAGCTTGATCAATCCTCG+AGG | 0.725816 | 3.3:+44276904 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ACTTCAGATGCATAATGATT+GGG | - | chr3.3:44277053-44277072 | MS.gene70974:CDS | 30.0% | |
| ATATATCGGTATTTACTGCA+AGG | - | chr3.3:44276821-44276840 | MS.gene70974:CDS | 30.0% | |
| GAAACAACAATGTCACATTA+TGG | - | chr3.3:44277274-44277293 | MS.gene70974:CDS | 30.0% | |
| GATCACACGATTAAGATAAT+TGG | - | chr3.3:44276535-44276554 | MS.gene70974:CDS | 30.0% | |
| GTCTTTGACAGGAAATATAT+TGG | - | chr3.3:44277239-44277258 | MS.gene70974:CDS | 30.0% | |
| TATATCGGTATTTACTGCAA+GGG | - | chr3.3:44276822-44276841 | MS.gene70974:CDS | 30.0% | |
| CACTTCAGATGCATAATGAT+TGG | - | chr3.3:44277052-44277071 | MS.gene70974:CDS | 35.0% | |
| GATTTAGGAAGTCCCAAATT+CGG | + | chr3.3:44277099-44277118 | None:intergenic | 35.0% | |
| GCACTAGCAATAGTAGATTT+AGG | + | chr3.3:44277114-44277133 | None:intergenic | 35.0% | |
| TGGTTGCGATAATACTGTTA+AGG | - | chr3.3:44276984-44277003 | MS.gene70974:CDS | 35.0% | |
| TTCGTCTGATGGGAATATAT+CGG | - | chr3.3:44276807-44276826 | MS.gene70974:CDS | 35.0% | |
| !! | CAATGGATTACTATGGAAAG+AGG | - | chr3.3:44276494-44276513 | MS.gene70974:CDS | 35.0% |
| !! | GATGTTGCAATGGATTACTA+TGG | - | chr3.3:44276487-44276506 | MS.gene70974:CDS | 35.0% |
| AAAGTGATCATATGGACCGT+TGG | - | chr3.3:44277147-44277166 | MS.gene70974:CDS | 40.0% | |
| AGGACGGTAAAGTGATCATA+TGG | - | chr3.3:44277139-44277158 | MS.gene70974:CDS | 40.0% | |
| AGTAATCCATTGCAACATCG+TGG | + | chr3.3:44276486-44276505 | None:intergenic | 40.0% | |
| ATAGGAACATGAAGCGAGAA+GGG | + | chr3.3:44276653-44276672 | None:intergenic | 40.0% | |
| ATGATTTCAAGACCCCTGTT+TGG | - | chr3.3:44277205-44277224 | MS.gene70974:CDS | 40.0% | |
| GCGATAATACTGTTAAGGTG+TGG | - | chr3.3:44276989-44277008 | MS.gene70974:CDS | 40.0% | |
| GTCTGTGAATTCAGTTGCTT+GGG | - | chr3.3:44276750-44276769 | MS.gene70974:CDS | 40.0% | |
| TATGGAAAGAAGCCGTAGAT+GGG | - | chr3.3:44277292-44277311 | MS.gene70974:CDS | 40.0% | |
| TTATGGAAAGAAGCCGTAGA+TGG | - | chr3.3:44277291-44277310 | MS.gene70974:CDS | 40.0% | |
| ! | AATATATTGGCTGTGGCTGA+TGG | - | chr3.3:44277252-44277271 | MS.gene70974:CDS | 40.0% |
| ! | CATTATGCATCTGAAGTGCA+GGG | + | chr3.3:44277050-44277069 | None:intergenic | 40.0% |
| ! | GACAGGAAATATATTGGCTG+TGG | - | chr3.3:44277245-44277264 | MS.gene70974:CDS | 40.0% |
| ! | TCATTATGCATCTGAAGTGC+AGG | + | chr3.3:44277051-44277070 | None:intergenic | 40.0% |
| ! | TGGTGTGACTTCTGTTTCTT+GGG | - | chr3.3:44276891-44276910 | MS.gene70974:CDS | 40.0% |
| ! | TTGGTGTGACTTCTGTTTCT+TGG | - | chr3.3:44276890-44276909 | MS.gene70974:CDS | 40.0% |
| AAACAGAAGTCACACCAACC+GGG | + | chr3.3:44276888-44276907 | None:intergenic | 45.0% | |
| AAAGAAGGGGATCATTGGGA+AGG | - | chr3.3:44277171-44277190 | MS.gene70974:CDS | 45.0% | |
| ACCATGATACCCTCCAAACA+GGG | + | chr3.3:44277221-44277240 | None:intergenic | 45.0% | |
| AGGAGGGTAACCAGAATGAA+TGG | - | chr3.3:44276695-44276714 | MS.gene70974:CDS | 45.0% | |
| ATATGGACCGTTGGCAAAGA+AGG | - | chr3.3:44277156-44277175 | MS.gene70974:CDS | 45.0% | |
| ATGATCCCCTTCTTTGCCAA+CGG | + | chr3.3:44277166-44277185 | None:intergenic | 45.0% | |
| ATGGAAAGAAGCCGTAGATG+GGG | - | chr3.3:44277293-44277312 | MS.gene70974:CDS | 45.0% | |
| ATTGGGTTCGTGATGTTGCT+TGG | - | chr3.3:44277070-44277089 | MS.gene70974:CDS | 45.0% | |
| ATTTCAAGACCCCTGTTTGG+AGG | - | chr3.3:44277208-44277227 | MS.gene70974:CDS | 45.0% | |
| CAAAGTTGCTAGATGCTGAG+AGG | + | chr3.3:44276575-44276594 | None:intergenic | 45.0% | |
| CAGCATCTAGCAACTTTGAC+TGG | - | chr3.3:44276577-44276596 | MS.gene70974:CDS | 45.0% | |
| CATAGGAACATGAAGCGAGA+AGG | + | chr3.3:44276654-44276673 | None:intergenic | 45.0% | |
| CATTGTCCACGATGTTGCAA+TGG | - | chr3.3:44276477-44276496 | MS.gene70974:CDS | 45.0% | |
| CCAGAACAAAGCTTCTGAAC+AGG | + | chr3.3:44276964-44276983 | None:intergenic | 45.0% | |
| CCTTCTCAGAAGGTTGAAAC+CGG | - | chr3.3:44276445-44276464 | MS.gene70974:CDS | 45.0% | |
| CGAGAAGGGAACCAAACTTA+GGG | + | chr3.3:44276639-44276658 | None:intergenic | 45.0% | |
| CGTCTGTGAATTCAGTTGCT+TGG | - | chr3.3:44276749-44276768 | MS.gene70974:CDS | 45.0% | |
| CTCGCTTCATGTTCCTATGA+CGG | - | chr3.3:44276655-44276674 | MS.gene70974:CDS | 45.0% | |
| GAAACAGAAGTCACACCAAC+CGG | + | chr3.3:44276889-44276908 | None:intergenic | 45.0% | |
| GAGCTTGGATCCATTCATTC+TGG | + | chr3.3:44276708-44276727 | None:intergenic | 45.0% | |
| GCTCATCAAAGACATGAGCT+TGG | + | chr3.3:44276723-44276742 | None:intergenic | 45.0% | |
| GTATTTACTGCAAGGGCAGA+TGG | - | chr3.3:44276829-44276848 | MS.gene70974:CDS | 45.0% | |
| TATGGACCGTTGGCAAAGAA+GGG | - | chr3.3:44277157-44277176 | MS.gene70974:CDS | 45.0% | |
| TGGCAAAGAAGGGGATCATT+GGG | - | chr3.3:44277167-44277186 | MS.gene70974:CDS | 45.0% | |
| TTGGCAAAGAAGGGGATCAT+TGG | - | chr3.3:44277166-44277185 | MS.gene70974:CDS | 45.0% | |
| TTTCAAGACCCCTGTTTGGA+GGG | - | chr3.3:44277209-44277228 | MS.gene70974:CDS | 45.0% | |
| ! | AGGGTATCATGGTCTTTGAC+AGG | - | chr3.3:44277228-44277247 | MS.gene70974:CDS | 45.0% |
| ! | CAACTTTGACTGGTCACCAA+GGG | - | chr3.3:44276587-44276606 | MS.gene70974:CDS | 45.0% |
| ! | GTGGACAATGTCTTGATGAC+CGG | + | chr3.3:44276467-44276486 | None:intergenic | 45.0% |
| ! | TTGGGTTCGTGATGTTGCTT+GGG | - | chr3.3:44277071-44277090 | MS.gene70974:CDS | 45.0% |
| !! | CCTGTTCAGAAGCTTTGTTC+TGG | - | chr3.3:44276961-44276980 | MS.gene70974:CDS | 45.0% |
| !! | GTTCAGAAGCTTTGTTCTGG+TGG | - | chr3.3:44276964-44276983 | MS.gene70974:CDS | 45.0% |
| AAGAAGCCGTAGATGGGGAA+TGG | - | chr3.3:44277298-44277317 | MS.gene70974:CDS | 50.0% | |
| AAGAATGACGCGTCCGTCAT+AGG | + | chr3.3:44276671-44276690 | None:intergenic | 50.0% | |
| AAGCAGAGACCCAACTCATG+AGG | + | chr3.3:44276778-44276797 | None:intergenic | 50.0% | |
| AAGGTGTGGAAGCTCAGCAA+TGG | - | chr3.3:44277003-44277022 | MS.gene70974:CDS | 50.0% | |
| ATGGACCGTTGGCAAAGAAG+GGG | - | chr3.3:44277158-44277177 | MS.gene70974:CDS | 50.0% | |
| ATGGCAACAGGTGACAACAG+TGG | - | chr3.3:44277317-44277336 | MS.gene70974:CDS | 50.0% | |
| ATTGATCAAGCTCACCCGGT+TGG | - | chr3.3:44276871-44276890 | MS.gene70974:CDS | 50.0% | |
| CAGCAATGGACAGTGGAAGA+TGG | - | chr3.3:44277017-44277036 | MS.gene70974:CDS | 50.0% | |
| CCATGATACCCTCCAAACAG+GGG | + | chr3.3:44277220-44277239 | None:intergenic | 50.0% | |
| CTGTTGCCATTCCCCATCTA+CGG | + | chr3.3:44277307-44277326 | None:intergenic | 50.0% | |
| GACCATGATACCCTCCAAAC+AGG | + | chr3.3:44277222-44277241 | None:intergenic | 50.0% | |
| GAGGATTGATCAAGCTCACC+CGG | - | chr3.3:44276867-44276886 | MS.gene70974:CDS | 50.0% | |
| GAGGCTAGCAACAGCTTCAT+CGG | - | chr3.3:44276513-44276532 | MS.gene70974:CDS | 50.0% | |
| GCGAGAAGGGAACCAAACTT+AGG | + | chr3.3:44276640-44276659 | None:intergenic | 50.0% | |
| GTGAGCTTGATCAATCCTCG+AGG | + | chr3.3:44276866-44276885 | None:intergenic | 50.0% | |
| TACTATTGCTAGTGCGTCGC+AGG | - | chr3.3:44277119-44277138 | MS.gene70974:CDS | 50.0% | |
| TGTTTCTTGGGCTCCTTCGA+TGG | - | chr3.3:44276903-44276922 | MS.gene70974:CDS | 50.0% | |
| TTTACTGCAAGGGCAGATGG+TGG | - | chr3.3:44276832-44276851 | MS.gene70974:CDS | 50.0% | |
| ! | ACGCGTCATTCTTTGGAAGG+AGG | - | chr3.3:44276678-44276697 | MS.gene70974:CDS | 50.0% |
| ! | CCGGTTTCAACCTTCTGAGA+AGG | + | chr3.3:44276448-44276467 | None:intergenic | 50.0% |
| ! | CGCGTCATTCTTTGGAAGGA+GGG | - | chr3.3:44276679-44276698 | MS.gene70974:CDS | 50.0% |
| ! | GCAACTTTGACTGGTCACCA+AGG | - | chr3.3:44276586-44276605 | MS.gene70974:CDS | 50.0% |
| ! | TCATGAGTTGGGTCTCTGCT+TGG | - | chr3.3:44276777-44276796 | MS.gene70974:CDS | 50.0% |
| ! | TGGCTTGTGCTTCGTCTGAT+GGG | - | chr3.3:44276797-44276816 | MS.gene70974:CDS | 50.0% |
| !! | ATGACGGACGCGTCATTCTT+TGG | - | chr3.3:44276671-44276690 | MS.gene70974:CDS | 50.0% |
| !! | CAGGTGCTCTTGTTGGTTCA+GGG | - | chr3.3:44276929-44276948 | MS.gene70974:CDS | 50.0% |
| !! | GTTGCTTGGGCACCGAATTT+GGG | - | chr3.3:44277084-44277103 | MS.gene70974:CDS | 50.0% |
| !! | TGTTGCTTGGGCACCGAATT+TGG | - | chr3.3:44277083-44277102 | MS.gene70974:CDS | 50.0% |
| !! | TTGGCTTGTGCTTCGTCTGA+TGG | - | chr3.3:44276796-44276815 | MS.gene70974:CDS | 50.0% |
| AGGGGATCATTGGGAAGGCA+AGG | - | chr3.3:44277176-44277195 | MS.gene70974:CDS | 55.0% | |
| ATTGCTAGTGCGTCGCAGGA+CGG | - | chr3.3:44277123-44277142 | MS.gene70974:CDS | 55.0% | |
| CGGACGCGTCATTCTTTGGA+AGG | - | chr3.3:44276675-44276694 | MS.gene70974:CDS | 55.0% | |
| CGTAGATGGGGAATGGCAAC+AGG | - | chr3.3:44277305-44277324 | MS.gene70974:CDS | 55.0% | |
| GCCTGTTTGGGAGGTTGTGT+GGG | - | chr3.3:44276609-44276628 | MS.gene70974:CDS | 55.0% | |
| GGAAGCTCAGCAATGGACAG+TGG | - | chr3.3:44277010-44277029 | MS.gene70974:CDS | 55.0% | |
| GTGTGGGCTCACCCTAAGTT+TGG | - | chr3.3:44276625-44276644 | MS.gene70974:CDS | 55.0% | |
| TGGTCACCAAGGGCCTGTTT+GGG | - | chr3.3:44276597-44276616 | MS.gene70974:CDS | 55.0% | |
| !! | CCAGGTGCTCTTGTTGGTTC+AGG | - | chr3.3:44276928-44276947 | MS.gene70974:CDS | 55.0% |
| !! | CCCCTGTTTGGAGGGTATCA+TGG | - | chr3.3:44277217-44277236 | MS.gene70974:CDS | 55.0% |
| !! | CCTGAACCAACAAGAGCACC+TGG | + | chr3.3:44276931-44276950 | None:intergenic | 55.0% |
| !! | TGCAAGGGCAGATGGTGGAT+GGG | - | chr3.3:44276837-44276856 | MS.gene70974:CDS | 55.0% |
| ATGGCGCCAGGTGCTCTTGT+TGG | - | chr3.3:44276922-44276941 | MS.gene70974:CDS | 60.0% | |
| CAACCTCCCAAACAGGCCCT+TGG | + | chr3.3:44276606-44276625 | None:intergenic | 60.0% | |
| CTGGTCACCAAGGGCCTGTT+TGG | - | chr3.3:44276596-44276615 | MS.gene70974:CDS | 60.0% | |
| GCCCACACAACCTCCCAAAC+AGG | + | chr3.3:44276613-44276632 | None:intergenic | 60.0% | |
| GCTTGGGCGCCTCATGAGTT+GGG | - | chr3.3:44276766-44276785 | MS.gene70974:CDS | 60.0% | |
| GGCCTGTTTGGGAGGTTGTG+TGG | - | chr3.3:44276608-44276627 | MS.gene70974:CDS | 60.0% | |
| TCACCAAGGGCCTGTTTGGG+AGG | - | chr3.3:44276600-44276619 | MS.gene70974:CDS | 60.0% | |
| TGCTTGGGCGCCTCATGAGT+TGG | - | chr3.3:44276765-44276784 | MS.gene70974:CDS | 60.0% | |
| !! | ATGGTGGATGGGACACCTCG+AGG | - | chr3.3:44276848-44276867 | MS.gene70974:CDS | 60.0% |
| !! | CTGCAAGGGCAGATGGTGGA+TGG | - | chr3.3:44276836-44276855 | MS.gene70974:CDS | 60.0% |
| ! | AGAGCACCTGGCGCCATCGA+AGG | + | chr3.3:44276919-44276938 | None:intergenic | 65.0% |
| TGGGCTCCTTCGATGGCGCC+AGG | - | chr3.3:44276910-44276929 | MS.gene70974:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 44276442 | 44277347 | 44276442 | ID=MS.gene70974 |
| chr3.3 | mRNA | 44276442 | 44277347 | 44276442 | ID=MS.gene70974.t1;Parent=MS.gene70974 |
| chr3.3 | exon | 44276442 | 44277347 | 44276442 | ID=MS.gene70974.t1.exon1;Parent=MS.gene70974.t1 |
| chr3.3 | CDS | 44276442 | 44277347 | 44276442 | ID=cds.MS.gene70974.t1;Parent=MS.gene70974.t1 |
| Gene Sequence |
| Protein sequence |
