Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73118.t1 | GAU45500.1 | 97 | 301 | 9 | 0 | 1 | 301 | 1 | 301 | 4.30E-136 | 494.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73118.t1 | O64740 | 77.5 | 302 | 67 | 1 | 1 | 301 | 1 | 302 | 1.2e-97 | 357.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73118.t1 | A0A2Z6P822 | 97.0 | 301 | 9 | 0 | 1 | 301 | 1 | 301 | 3.1e-136 | 494.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene73118 | MS.gene59349 | PPI |
| MS.gene052015 | MS.gene73118 | PPI |
| MS.gene73118 | MS.gene035806 | PPI |
| MS.gene032173 | MS.gene73118 | PPI |
| MS.gene73118 | MS.gene048821 | PPI |
| MS.gene73118 | MS.gene010482 | PPI |
| MS.gene064541 | MS.gene73118 | PPI |
| MS.gene98722 | MS.gene73118 | PPI |
| MS.gene73118 | MS.gene70974 | PPI |
| MS.gene73118 | MS.gene98722 | PPI |
| MS.gene70974 | MS.gene73118 | PPI |
| MS.gene85280 | MS.gene73118 | PPI |
| MS.gene047763 | MS.gene73118 | PPI |
| MS.gene73118 | MS.gene72123 | PPI |
| MS.gene030377 | MS.gene73118 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73118.t1 | MTR_3g054090 | 97.674 | 301 | 7 | 0 | 1 | 301 | 1 | 301 | 0.0 | 599 |
| MS.gene73118.t1 | MTR_6g072020 | 26.752 | 314 | 193 | 9 | 20 | 301 | 18 | 326 | 5.64e-18 | 83.2 |
| MS.gene73118.t1 | MTR_7g104550 | 25.000 | 252 | 156 | 10 | 46 | 286 | 7 | 236 | 4.87e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73118.t1 | AT2G30050 | 84.768 | 302 | 45 | 1 | 1 | 301 | 1 | 302 | 0.0 | 528 |
| MS.gene73118.t1 | AT3G01340 | 81.457 | 302 | 55 | 1 | 1 | 301 | 1 | 302 | 0.0 | 517 |
| MS.gene73118.t1 | AT3G01340 | 81.457 | 302 | 55 | 1 | 1 | 301 | 1 | 302 | 0.0 | 517 |
| MS.gene73118.t1 | AT1G64350 | 26.007 | 273 | 161 | 11 | 60 | 301 | 61 | 323 | 8.53e-13 | 68.2 |
| MS.gene73118.t1 | AT4G02730 | 27.165 | 254 | 149 | 11 | 46 | 298 | 34 | 252 | 1.23e-11 | 64.7 |
Find 114 sgRNAs with CRISPR-Local
Find 113 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAGGTGCTCTTGTTGGTTC+AGG | 0.204960 | 3.4:-50804337 | MS.gene73118:CDS |
| TGTTGCTTGGGCACCGAATT+TGG | 0.238572 | 3.4:-50804182 | MS.gene73118:CDS |
| TTGGTGTGACTTCTGTTTCT+TGG | 0.240030 | 3.4:-50804375 | MS.gene73118:CDS |
| CTGGTCACCAAGGGCCTGTT+TGG | 0.241942 | 3.4:-50804669 | MS.gene73118:CDS |
| ATGACGGACGCGTCATTCTT+TGG | 0.264898 | 3.4:-50804594 | MS.gene73118:CDS |
| CCTGTTCAGAAGCTTTGTTC+TGG | 0.295507 | 3.4:-50804304 | MS.gene73118:CDS |
| GAGCTTGGATCCATTCATTC+TGG | 0.309347 | 3.4:+50804560 | None:intergenic |
| GAAACAACAATGTCACATTA+TGG | 0.309368 | 3.4:-50803991 | MS.gene73118:CDS |
| GCACTAGCAATAGTAGATTT+AGG | 0.318347 | 3.4:+50804154 | None:intergenic |
| GTCTTTGACAGGAAATATAT+TGG | 0.319441 | 3.4:-50804026 | MS.gene73118:CDS |
| GATCACACGATTAAGATAAT+TGG | 0.328547 | 3.4:-50804730 | MS.gene73118:CDS |
| CACTTCAGATGCATAATGAT+TGG | 0.332563 | 3.4:-50804213 | MS.gene73118:CDS |
| GCCTGTTTGGGAGGTTGTGT+GGG | 0.350708 | 3.4:-50804656 | MS.gene73118:CDS |
| GTCTGTGAATTCAGTTGCTT+GGG | 0.353330 | 3.4:-50804515 | MS.gene73118:CDS |
| GTTGCTTGGGCACCGAATTT+GGG | 0.365628 | 3.4:-50804181 | MS.gene73118:CDS |
| AAGAATGACGCGTCCGTCAT+AGG | 0.368314 | 3.4:+50804597 | None:intergenic |
| GACCATGATACCCTCCAAAC+AGG | 0.377638 | 3.4:+50804046 | None:intergenic |
| GTGTGGGCTCACCCTAAGTT+TGG | 0.382617 | 3.4:-50804640 | MS.gene73118:CDS |
| TGGTGTGACTTCTGTTTCTT+GGG | 0.389730 | 3.4:-50804374 | MS.gene73118:CDS |
| TGGGCTCCTTCGATGGCGCC+AGG | 0.392172 | 3.4:-50804355 | MS.gene73118:CDS |
| TTGGCAAAGAAGGGGATCAT+TGG | 0.398091 | 3.4:-50804099 | MS.gene73118:CDS |
| GAAACAGAAGTCACACCAAC+CGG | 0.403176 | 3.4:+50804379 | None:intergenic |
| TGCTTGGGCGCCTCATGAGT+TGG | 0.404443 | 3.4:-50804500 | MS.gene73118:CDS |
| ATGGCGCCAGGTGCTCTTGT+TGG | 0.405417 | 3.4:-50804343 | MS.gene73118:CDS |
| TTGGCTTGTGCTTCGTCTGA+TGG | 0.406467 | 3.4:-50804469 | MS.gene73118:CDS |
| GGCCTGTTTGGGAGGTTGTG+TGG | 0.408850 | 3.4:-50804657 | MS.gene73118:CDS |
| TGGTCACCAAGGGCCTGTTT+GGG | 0.409839 | 3.4:-50804668 | MS.gene73118:CDS |
| GCTTGGGCGCCTCATGAGTT+GGG | 0.412397 | 3.4:-50804499 | MS.gene73118:CDS |
| CAGGTGCTCTTGTTGGTTCA+GGG | 0.413499 | 3.4:-50804336 | MS.gene73118:CDS |
| CGTCTGTGAATTCAGTTGCT+TGG | 0.416920 | 3.4:-50804516 | MS.gene73118:CDS |
| ATGATTTCAAGACCCCTGTT+TGG | 0.434543 | 3.4:-50804060 | MS.gene73118:CDS |
| GCCCACACAACCTCCCAAAC+AGG | 0.434635 | 3.4:+50804655 | None:intergenic |
| TACTATTGCTAGTGCGTCGC+AGG | 0.442514 | 3.4:-50804146 | MS.gene73118:CDS |
| TTATGGAAAGAAGCCGTAGA+TGG | 0.443381 | 3.4:-50803974 | MS.gene73118:CDS |
| TCATGAGTTGGGTCTCTGCT+TGG | 0.444150 | 3.4:-50804488 | MS.gene73118:CDS |
| GATTTAGGAAGTCCCAAATT+CGG | 0.447910 | 3.4:+50804169 | None:intergenic |
| CGTAGATGGGGAATGGCAAC+AGG | 0.449286 | 3.4:-50803960 | MS.gene73118:CDS |
| TGTTTCTTGGGCTCCTTCGA+TGG | 0.450549 | 3.4:-50804362 | MS.gene73118:CDS |
| CCAGAACAAAGCTTCTGAAC+AGG | 0.458908 | 3.4:+50804304 | None:intergenic |
| ATTGGGTTCGTGATGTTGCT+TGG | 0.468374 | 3.4:-50804195 | MS.gene73118:CDS |
| GATGTTGCAATGGATTACTA+TGG | 0.468886 | 3.4:-50804778 | MS.gene73118:CDS |
| ATATGGACCGTTGGCAAAGA+AGG | 0.469148 | 3.4:-50804109 | MS.gene73118:CDS |
| TTGGGTTCGTGATGTTGCTT+GGG | 0.471143 | 3.4:-50804194 | MS.gene73118:CDS |
| TCATTATGCATCTGAAGTGC+AGG | 0.475699 | 3.4:+50804217 | None:intergenic |
| GCGAGAAGGGAACCAAACTT+AGG | 0.477573 | 3.4:+50804628 | None:intergenic |
| CCCCTGTTTGGAGGGTATCA+TGG | 0.478267 | 3.4:-50804048 | MS.gene73118:CDS |
| TGGCTTGTGCTTCGTCTGAT+GGG | 0.479615 | 3.4:-50804468 | MS.gene73118:CDS |
| ACTTCAGATGCATAATGATT+GGG | 0.487890 | 3.4:-50804212 | MS.gene73118:CDS |
| GTTCAGAAGCTTTGTTCTGG+TGG | 0.488323 | 3.4:-50804301 | MS.gene73118:CDS |
| TGGCAAAGAAGGGGATCATT+GGG | 0.489326 | 3.4:-50804098 | MS.gene73118:CDS |
| CTGCAAGGGCAGATGGTGGA+TGG | 0.503412 | 3.4:-50804429 | MS.gene73118:CDS |
| CAGCAATGGACAGTGGAAGA+TGG | 0.510856 | 3.4:-50804248 | MS.gene73118:CDS |
| CGCGTCATTCTTTGGAAGGA+GGG | 0.511398 | 3.4:-50804586 | MS.gene73118:CDS |
| AATATATTGGCTGTGGCTGA+TGG | 0.512420 | 3.4:-50804013 | MS.gene73118:CDS |
| TATGGAAAGAAGCCGTAGAT+GGG | 0.514853 | 3.4:-50803973 | MS.gene73118:CDS |
| AGGAGGGTAACCAGAATGAA+TGG | 0.519620 | 3.4:-50804570 | MS.gene73118:CDS |
| CCTTCTCAGAAGGTTGAAAC+CGG | 0.519832 | 3.4:-50804820 | MS.gene73118:CDS |
| GTGGACAATGTCTTGATGAC+CGG | 0.520259 | 3.4:+50804801 | None:intergenic |
| TCACCAAGGGCCTGTTTGGG+AGG | 0.524084 | 3.4:-50804665 | MS.gene73118:CDS |
| AGGGTATCATGGTCTTTGAC+AGG | 0.524931 | 3.4:-50804037 | MS.gene73118:CDS |
| AGGACGGTAAAGTGATCATA+TGG | 0.528476 | 3.4:-50804126 | MS.gene73118:CDS |
| GAGGCTAGCAACAGCTTCAT+CGG | 0.529147 | 3.4:-50804752 | MS.gene73118:CDS |
| CAGCATCTAGCAACTTTGAC+TGG | 0.538778 | 3.4:-50804688 | MS.gene73118:CDS |
| ATTTCAAGACCCCTGTTTGG+AGG | 0.539676 | 3.4:-50804057 | MS.gene73118:CDS |
| ATGATCCCCTTCTTTGCCAA+CGG | 0.541054 | 3.4:+50804102 | None:intergenic |
| TGGTTGCGATAATACTGTTA+AGG | 0.541340 | 3.4:-50804281 | MS.gene73118:CDS |
| AGAGCACCTGGCGCCATCGA+AGG | 0.542437 | 3.4:+50804349 | None:intergenic |
| CGAGAAGGGAACCAAACTTA+GGG | 0.543581 | 3.4:+50804629 | None:intergenic |
| GCTCATCAAAGACATGAGCT+TGG | 0.548713 | 3.4:+50804545 | None:intergenic |
| CAGAAACATGCCTTCTCAGA+AGG | 0.550664 | 3.4:-50804830 | None:intergenic |
| TATGGACCGTTGGCAAAGAA+GGG | 0.551166 | 3.4:-50804108 | MS.gene73118:CDS |
| GACAGGAAATATATTGGCTG+TGG | 0.552846 | 3.4:-50804020 | MS.gene73118:CDS |
| CTGTTGCCATTCCCCATCTA+CGG | 0.553740 | 3.4:+50803961 | None:intergenic |
| CATAGGAACATGAAGCGAGA+AGG | 0.556637 | 3.4:+50804614 | None:intergenic |
| AGGGGATCATTGGGAAGGCA+AGG | 0.557835 | 3.4:-50804089 | MS.gene73118:CDS |
| GTATTTACTGCAAGGGCAGA+TGG | 0.559270 | 3.4:-50804436 | MS.gene73118:CDS |
| CAACCTCCCAAACAGGCCCT+TGG | 0.559441 | 3.4:+50804662 | None:intergenic |
| CAATGGATTACTATGGAAAG+AGG | 0.559724 | 3.4:-50804771 | MS.gene73118:CDS |
| CTCGCTTCATGTTCCTATGA+CGG | 0.561648 | 3.4:-50804610 | MS.gene73118:CDS |
| CCGGTTTCAACCTTCTGAGA+AGG | 0.569075 | 3.4:+50804820 | None:intergenic |
| TTTCAAGACCCCTGTTTGGA+GGG | 0.570292 | 3.4:-50804056 | MS.gene73118:CDS |
| CATTGTCCACGATGTTGCAA+TGG | 0.571021 | 3.4:-50804788 | MS.gene73118:CDS |
| ATATATCGGTATTTACTGCA+AGG | 0.573760 | 3.4:-50804444 | MS.gene73118:CDS |
| CGGACGCGTCATTCTTTGGA+AGG | 0.574371 | 3.4:-50804590 | MS.gene73118:CDS |
| CCTGAACCAACAAGAGCACC+TGG | 0.575589 | 3.4:+50804337 | None:intergenic |
| TGCAAGGGCAGATGGTGGAT+GGG | 0.576134 | 3.4:-50804428 | MS.gene73118:CDS |
| ACGCGTCATTCTTTGGAAGG+AGG | 0.581061 | 3.4:-50804587 | MS.gene73118:CDS |
| ACCATGATACCCTCCAAACA+GGG | 0.587238 | 3.4:+50804047 | None:intergenic |
| AAGAAGCCGTAGATGGGGAA+TGG | 0.590067 | 3.4:-50803967 | MS.gene73118:CDS |
| TTCGTCTGATGGGAATATAT+CGG | 0.590339 | 3.4:-50804458 | MS.gene73118:CDS |
| ATAGGAACATGAAGCGAGAA+GGG | 0.592233 | 3.4:+50804615 | None:intergenic |
| AAAGTGATCATATGGACCGT+TGG | 0.593238 | 3.4:-50804118 | MS.gene73118:CDS |
| ATTGCTAGTGCGTCGCAGGA+CGG | 0.600196 | 3.4:-50804142 | MS.gene73118:CDS |
| AAGCAGAGACCCAACTCATG+AGG | 0.602443 | 3.4:+50804490 | None:intergenic |
| GAGGATTGATCAAGCTCACC+CGG | 0.616430 | 3.4:-50804398 | MS.gene73118:CDS |
| CATTATGCATCTGAAGTGCA+GGG | 0.623511 | 3.4:+50804218 | None:intergenic |
| TATATCGGTATTTACTGCAA+GGG | 0.626484 | 3.4:-50804443 | MS.gene73118:CDS |
| AAGGTGTGGAAGCTCAGCAA+TGG | 0.628171 | 3.4:-50804262 | MS.gene73118:CDS |
| CAACTTTGACTGGTCACCAA+GGG | 0.628577 | 3.4:-50804678 | MS.gene73118:CDS |
| ATTGATCAAGCTCACCCGGT+TGG | 0.635140 | 3.4:-50804394 | MS.gene73118:CDS |
| AAACAGAAGTCACACCAACC+GGG | 0.636764 | 3.4:+50804380 | None:intergenic |
| ATGGACCGTTGGCAAAGAAG+GGG | 0.639822 | 3.4:-50804107 | MS.gene73118:CDS |
| TTTACTGCAAGGGCAGATGG+TGG | 0.642065 | 3.4:-50804433 | MS.gene73118:CDS |
| ATGGAAAGAAGCCGTAGATG+GGG | 0.650539 | 3.4:-50803972 | MS.gene73118:CDS |
| GCAACTTTGACTGGTCACCA+AGG | 0.656777 | 3.4:-50804679 | MS.gene73118:CDS |
| GGAAGCTCAGCAATGGACAG+TGG | 0.662826 | 3.4:-50804255 | MS.gene73118:CDS |
| GCGATAATACTGTTAAGGTG+TGG | 0.664994 | 3.4:-50804276 | MS.gene73118:CDS |
| AAAGAAGGGGATCATTGGGA+AGG | 0.667803 | 3.4:-50804094 | MS.gene73118:CDS |
| CAAAGTTGCTAGATGCTGAG+AGG | 0.674911 | 3.4:+50804693 | None:intergenic |
| ATGGTGGATGGGACACCTCG+AGG | 0.682025 | 3.4:-50804417 | MS.gene73118:CDS |
| AGTAATCCATTGCAACATCG+TGG | 0.685605 | 3.4:+50804782 | None:intergenic |
| ATGGCAACAGGTGACAACAG+TGG | 0.686621 | 3.4:-50803948 | MS.gene73118:CDS |
| CCATGATACCCTCCAAACAG+GGG | 0.724647 | 3.4:+50804048 | None:intergenic |
| GTGAGCTTGATCAATCCTCG+AGG | 0.725816 | 3.4:+50804402 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ACTTCAGATGCATAATGATT+GGG | - | chr3.4:50804551-50804570 | MS.gene73118:CDS | 30.0% | |
| ATATATCGGTATTTACTGCA+AGG | - | chr3.4:50804319-50804338 | MS.gene73118:CDS | 30.0% | |
| GAAACAACAATGTCACATTA+TGG | - | chr3.4:50804772-50804791 | MS.gene73118:CDS | 30.0% | |
| GATCACACGATTAAGATAAT+TGG | - | chr3.4:50804033-50804052 | MS.gene73118:CDS | 30.0% | |
| GTCTTTGACAGGAAATATAT+TGG | - | chr3.4:50804737-50804756 | MS.gene73118:CDS | 30.0% | |
| TATATCGGTATTTACTGCAA+GGG | - | chr3.4:50804320-50804339 | MS.gene73118:CDS | 30.0% | |
| CACTTCAGATGCATAATGAT+TGG | - | chr3.4:50804550-50804569 | MS.gene73118:CDS | 35.0% | |
| GATTTAGGAAGTCCCAAATT+CGG | + | chr3.4:50804597-50804616 | None:intergenic | 35.0% | |
| GCACTAGCAATAGTAGATTT+AGG | + | chr3.4:50804612-50804631 | None:intergenic | 35.0% | |
| TGGTTGCGATAATACTGTTA+AGG | - | chr3.4:50804482-50804501 | MS.gene73118:CDS | 35.0% | |
| TTCGTCTGATGGGAATATAT+CGG | - | chr3.4:50804305-50804324 | MS.gene73118:CDS | 35.0% | |
| !! | CAATGGATTACTATGGAAAG+AGG | - | chr3.4:50803992-50804011 | MS.gene73118:CDS | 35.0% |
| !! | GATGTTGCAATGGATTACTA+TGG | - | chr3.4:50803985-50804004 | MS.gene73118:CDS | 35.0% |
| AAAGTGATCATATGGACCGT+TGG | - | chr3.4:50804645-50804664 | MS.gene73118:CDS | 40.0% | |
| AGGACGGTAAAGTGATCATA+TGG | - | chr3.4:50804637-50804656 | MS.gene73118:CDS | 40.0% | |
| AGTAATCCATTGCAACATCG+TGG | + | chr3.4:50803984-50804003 | None:intergenic | 40.0% | |
| ATAGGAACATGAAGCGAGAA+GGG | + | chr3.4:50804151-50804170 | None:intergenic | 40.0% | |
| ATGATTTCAAGACCCCTGTT+TGG | - | chr3.4:50804703-50804722 | MS.gene73118:CDS | 40.0% | |
| GCGATAATACTGTTAAGGTG+TGG | - | chr3.4:50804487-50804506 | MS.gene73118:CDS | 40.0% | |
| GTCTGTGAATTCAGTTGCTT+GGG | - | chr3.4:50804248-50804267 | MS.gene73118:CDS | 40.0% | |
| TATGGAAAGAAGCCGTAGAT+GGG | - | chr3.4:50804790-50804809 | MS.gene73118:CDS | 40.0% | |
| TTATGGAAAGAAGCCGTAGA+TGG | - | chr3.4:50804789-50804808 | MS.gene73118:CDS | 40.0% | |
| ! | AATATATTGGCTGTGGCTGA+TGG | - | chr3.4:50804750-50804769 | MS.gene73118:CDS | 40.0% |
| ! | CATTATGCATCTGAAGTGCA+GGG | + | chr3.4:50804548-50804567 | None:intergenic | 40.0% |
| ! | GACAGGAAATATATTGGCTG+TGG | - | chr3.4:50804743-50804762 | MS.gene73118:CDS | 40.0% |
| ! | TCATTATGCATCTGAAGTGC+AGG | + | chr3.4:50804549-50804568 | None:intergenic | 40.0% |
| ! | TGGTGTGACTTCTGTTTCTT+GGG | - | chr3.4:50804389-50804408 | MS.gene73118:CDS | 40.0% |
| ! | TTGGTGTGACTTCTGTTTCT+TGG | - | chr3.4:50804388-50804407 | MS.gene73118:CDS | 40.0% |
| AAACAGAAGTCACACCAACC+GGG | + | chr3.4:50804386-50804405 | None:intergenic | 45.0% | |
| AAAGAAGGGGATCATTGGGA+AGG | - | chr3.4:50804669-50804688 | MS.gene73118:CDS | 45.0% | |
| ACCATGATACCCTCCAAACA+GGG | + | chr3.4:50804719-50804738 | None:intergenic | 45.0% | |
| AGGAGGGTAACCAGAATGAA+TGG | - | chr3.4:50804193-50804212 | MS.gene73118:CDS | 45.0% | |
| ATATGGACCGTTGGCAAAGA+AGG | - | chr3.4:50804654-50804673 | MS.gene73118:CDS | 45.0% | |
| ATGATCCCCTTCTTTGCCAA+CGG | + | chr3.4:50804664-50804683 | None:intergenic | 45.0% | |
| ATGGAAAGAAGCCGTAGATG+GGG | - | chr3.4:50804791-50804810 | MS.gene73118:CDS | 45.0% | |
| ATTGGGTTCGTGATGTTGCT+TGG | - | chr3.4:50804568-50804587 | MS.gene73118:CDS | 45.0% | |
| ATTTCAAGACCCCTGTTTGG+AGG | - | chr3.4:50804706-50804725 | MS.gene73118:CDS | 45.0% | |
| CAAAGTTGCTAGATGCTGAG+AGG | + | chr3.4:50804073-50804092 | None:intergenic | 45.0% | |
| CAGCATCTAGCAACTTTGAC+TGG | - | chr3.4:50804075-50804094 | MS.gene73118:CDS | 45.0% | |
| CATAGGAACATGAAGCGAGA+AGG | + | chr3.4:50804152-50804171 | None:intergenic | 45.0% | |
| CATTGTCCACGATGTTGCAA+TGG | - | chr3.4:50803975-50803994 | MS.gene73118:CDS | 45.0% | |
| CCAGAACAAAGCTTCTGAAC+AGG | + | chr3.4:50804462-50804481 | None:intergenic | 45.0% | |
| CCTTCTCAGAAGGTTGAAAC+CGG | - | chr3.4:50803943-50803962 | MS.gene73118:CDS | 45.0% | |
| CGAGAAGGGAACCAAACTTA+GGG | + | chr3.4:50804137-50804156 | None:intergenic | 45.0% | |
| CGTCTGTGAATTCAGTTGCT+TGG | - | chr3.4:50804247-50804266 | MS.gene73118:CDS | 45.0% | |
| CTCGCTTCATGTTCCTATGA+CGG | - | chr3.4:50804153-50804172 | MS.gene73118:CDS | 45.0% | |
| GAAACAGAAGTCACACCAAC+CGG | + | chr3.4:50804387-50804406 | None:intergenic | 45.0% | |
| GAGCTTGGATCCATTCATTC+TGG | + | chr3.4:50804206-50804225 | None:intergenic | 45.0% | |
| GCTCATCAAAGACATGAGCT+TGG | + | chr3.4:50804221-50804240 | None:intergenic | 45.0% | |
| GTATTTACTGCAAGGGCAGA+TGG | - | chr3.4:50804327-50804346 | MS.gene73118:CDS | 45.0% | |
| TATGGACCGTTGGCAAAGAA+GGG | - | chr3.4:50804655-50804674 | MS.gene73118:CDS | 45.0% | |
| TGGCAAAGAAGGGGATCATT+GGG | - | chr3.4:50804665-50804684 | MS.gene73118:CDS | 45.0% | |
| TTGGCAAAGAAGGGGATCAT+TGG | - | chr3.4:50804664-50804683 | MS.gene73118:CDS | 45.0% | |
| TTTCAAGACCCCTGTTTGGA+GGG | - | chr3.4:50804707-50804726 | MS.gene73118:CDS | 45.0% | |
| ! | AGGGTATCATGGTCTTTGAC+AGG | - | chr3.4:50804726-50804745 | MS.gene73118:CDS | 45.0% |
| ! | CAACTTTGACTGGTCACCAA+GGG | - | chr3.4:50804085-50804104 | MS.gene73118:CDS | 45.0% |
| ! | GTGGACAATGTCTTGATGAC+CGG | + | chr3.4:50803965-50803984 | None:intergenic | 45.0% |
| ! | TTGGGTTCGTGATGTTGCTT+GGG | - | chr3.4:50804569-50804588 | MS.gene73118:CDS | 45.0% |
| !! | CCTGTTCAGAAGCTTTGTTC+TGG | - | chr3.4:50804459-50804478 | MS.gene73118:CDS | 45.0% |
| !! | GTTCAGAAGCTTTGTTCTGG+TGG | - | chr3.4:50804462-50804481 | MS.gene73118:CDS | 45.0% |
| AAGAAGCCGTAGATGGGGAA+TGG | - | chr3.4:50804796-50804815 | MS.gene73118:CDS | 50.0% | |
| AAGAATGACGCGTCCGTCAT+AGG | + | chr3.4:50804169-50804188 | None:intergenic | 50.0% | |
| AAGCAGAGACCCAACTCATG+AGG | + | chr3.4:50804276-50804295 | None:intergenic | 50.0% | |
| AAGGTGTGGAAGCTCAGCAA+TGG | - | chr3.4:50804501-50804520 | MS.gene73118:CDS | 50.0% | |
| ATGGACCGTTGGCAAAGAAG+GGG | - | chr3.4:50804656-50804675 | MS.gene73118:CDS | 50.0% | |
| ATGGCAACAGGTGACAACAG+TGG | - | chr3.4:50804815-50804834 | MS.gene73118:CDS | 50.0% | |
| ATTGATCAAGCTCACCCGGT+TGG | - | chr3.4:50804369-50804388 | MS.gene73118:CDS | 50.0% | |
| CAGCAATGGACAGTGGAAGA+TGG | - | chr3.4:50804515-50804534 | MS.gene73118:CDS | 50.0% | |
| CCATGATACCCTCCAAACAG+GGG | + | chr3.4:50804718-50804737 | None:intergenic | 50.0% | |
| CTGTTGCCATTCCCCATCTA+CGG | + | chr3.4:50804805-50804824 | None:intergenic | 50.0% | |
| GACCATGATACCCTCCAAAC+AGG | + | chr3.4:50804720-50804739 | None:intergenic | 50.0% | |
| GAGGATTGATCAAGCTCACC+CGG | - | chr3.4:50804365-50804384 | MS.gene73118:CDS | 50.0% | |
| GAGGCTAGCAACAGCTTCAT+CGG | - | chr3.4:50804011-50804030 | MS.gene73118:CDS | 50.0% | |
| GCGAGAAGGGAACCAAACTT+AGG | + | chr3.4:50804138-50804157 | None:intergenic | 50.0% | |
| GTGAGCTTGATCAATCCTCG+AGG | + | chr3.4:50804364-50804383 | None:intergenic | 50.0% | |
| TACTATTGCTAGTGCGTCGC+AGG | - | chr3.4:50804617-50804636 | MS.gene73118:CDS | 50.0% | |
| TGTTTCTTGGGCTCCTTCGA+TGG | - | chr3.4:50804401-50804420 | MS.gene73118:CDS | 50.0% | |
| TTTACTGCAAGGGCAGATGG+TGG | - | chr3.4:50804330-50804349 | MS.gene73118:CDS | 50.0% | |
| ! | ACGCGTCATTCTTTGGAAGG+AGG | - | chr3.4:50804176-50804195 | MS.gene73118:CDS | 50.0% |
| ! | CCGGTTTCAACCTTCTGAGA+AGG | + | chr3.4:50803946-50803965 | None:intergenic | 50.0% |
| ! | CGCGTCATTCTTTGGAAGGA+GGG | - | chr3.4:50804177-50804196 | MS.gene73118:CDS | 50.0% |
| ! | GCAACTTTGACTGGTCACCA+AGG | - | chr3.4:50804084-50804103 | MS.gene73118:CDS | 50.0% |
| ! | TCATGAGTTGGGTCTCTGCT+TGG | - | chr3.4:50804275-50804294 | MS.gene73118:CDS | 50.0% |
| ! | TGGCTTGTGCTTCGTCTGAT+GGG | - | chr3.4:50804295-50804314 | MS.gene73118:CDS | 50.0% |
| !! | ATGACGGACGCGTCATTCTT+TGG | - | chr3.4:50804169-50804188 | MS.gene73118:CDS | 50.0% |
| !! | CAGGTGCTCTTGTTGGTTCA+GGG | - | chr3.4:50804427-50804446 | MS.gene73118:CDS | 50.0% |
| !! | GTTGCTTGGGCACCGAATTT+GGG | - | chr3.4:50804582-50804601 | MS.gene73118:CDS | 50.0% |
| !! | TGTTGCTTGGGCACCGAATT+TGG | - | chr3.4:50804581-50804600 | MS.gene73118:CDS | 50.0% |
| !! | TTGGCTTGTGCTTCGTCTGA+TGG | - | chr3.4:50804294-50804313 | MS.gene73118:CDS | 50.0% |
| AGGGGATCATTGGGAAGGCA+AGG | - | chr3.4:50804674-50804693 | MS.gene73118:CDS | 55.0% | |
| ATTGCTAGTGCGTCGCAGGA+CGG | - | chr3.4:50804621-50804640 | MS.gene73118:CDS | 55.0% | |
| CGGACGCGTCATTCTTTGGA+AGG | - | chr3.4:50804173-50804192 | MS.gene73118:CDS | 55.0% | |
| CGTAGATGGGGAATGGCAAC+AGG | - | chr3.4:50804803-50804822 | MS.gene73118:CDS | 55.0% | |
| GCCTGTTTGGGAGGTTGTGT+GGG | - | chr3.4:50804107-50804126 | MS.gene73118:CDS | 55.0% | |
| GGAAGCTCAGCAATGGACAG+TGG | - | chr3.4:50804508-50804527 | MS.gene73118:CDS | 55.0% | |
| GTGTGGGCTCACCCTAAGTT+TGG | - | chr3.4:50804123-50804142 | MS.gene73118:CDS | 55.0% | |
| TGGTCACCAAGGGCCTGTTT+GGG | - | chr3.4:50804095-50804114 | MS.gene73118:CDS | 55.0% | |
| !! | CCAGGTGCTCTTGTTGGTTC+AGG | - | chr3.4:50804426-50804445 | MS.gene73118:CDS | 55.0% |
| !! | CCCCTGTTTGGAGGGTATCA+TGG | - | chr3.4:50804715-50804734 | MS.gene73118:CDS | 55.0% |
| !! | CCTGAACCAACAAGAGCACC+TGG | + | chr3.4:50804429-50804448 | None:intergenic | 55.0% |
| !! | TGCAAGGGCAGATGGTGGAT+GGG | - | chr3.4:50804335-50804354 | MS.gene73118:CDS | 55.0% |
| ATGGCGCCAGGTGCTCTTGT+TGG | - | chr3.4:50804420-50804439 | MS.gene73118:CDS | 60.0% | |
| CAACCTCCCAAACAGGCCCT+TGG | + | chr3.4:50804104-50804123 | None:intergenic | 60.0% | |
| CTGGTCACCAAGGGCCTGTT+TGG | - | chr3.4:50804094-50804113 | MS.gene73118:CDS | 60.0% | |
| GCCCACACAACCTCCCAAAC+AGG | + | chr3.4:50804111-50804130 | None:intergenic | 60.0% | |
| GCTTGGGCGCCTCATGAGTT+GGG | - | chr3.4:50804264-50804283 | MS.gene73118:CDS | 60.0% | |
| GGCCTGTTTGGGAGGTTGTG+TGG | - | chr3.4:50804106-50804125 | MS.gene73118:CDS | 60.0% | |
| TCACCAAGGGCCTGTTTGGG+AGG | - | chr3.4:50804098-50804117 | MS.gene73118:CDS | 60.0% | |
| TGCTTGGGCGCCTCATGAGT+TGG | - | chr3.4:50804263-50804282 | MS.gene73118:CDS | 60.0% | |
| !! | ATGGTGGATGGGACACCTCG+AGG | - | chr3.4:50804346-50804365 | MS.gene73118:CDS | 60.0% |
| !! | CTGCAAGGGCAGATGGTGGA+TGG | - | chr3.4:50804334-50804353 | MS.gene73118:CDS | 60.0% |
| ! | AGAGCACCTGGCGCCATCGA+AGG | + | chr3.4:50804417-50804436 | None:intergenic | 65.0% |
| TGGGCTCCTTCGATGGCGCC+AGG | - | chr3.4:50804408-50804427 | MS.gene73118:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 50803940 | 50804845 | 50803940 | ID=MS.gene73118 |
| chr3.4 | mRNA | 50803940 | 50804845 | 50803940 | ID=MS.gene73118.t1;Parent=MS.gene73118 |
| chr3.4 | exon | 50803940 | 50804845 | 50803940 | ID=MS.gene73118.t1.exon1;Parent=MS.gene73118.t1 |
| chr3.4 | CDS | 50803940 | 50804845 | 50803940 | ID=cds.MS.gene73118.t1;Parent=MS.gene73118.t1 |
| Gene Sequence |
| Protein sequence |
