Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene036740.t1 | XP_003609382.2 | 94.3 | 864 | 49 | 0 | 1 | 864 | 2 | 865 | 0.00E+00 | 1454.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene036740.t1 | Q9LFS8 | 55.4 | 863 | 385 | 0 | 2 | 864 | 13 | 875 | 2.4e-249 | 863.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene036740.t1 | G7JE71 | 94.3 | 864 | 49 | 0 | 1 | 864 | 2 | 865 | 0.0e+00 | 1454.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene036740 | MS.gene043595 | PPI |
| MS.gene043645 | MS.gene036740 | PPI |
| MS.gene99872 | MS.gene036740 | PPI |
| MS.gene043593 | MS.gene036740 | PPI |
| MS.gene064353 | MS.gene036740 | PPI |
| MS.gene73093 | MS.gene036740 | PPI |
| MS.gene043643 | MS.gene036740 | PPI |
| MS.gene035826 | MS.gene036740 | PPI |
| MS.gene064351 | MS.gene036740 | PPI |
| MS.gene036740 | MS.gene035825 | PPI |
| MS.gene035828 | MS.gene036740 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene036740.t1 | MTR_4g115050 | 97.222 | 864 | 24 | 0 | 1 | 864 | 2 | 865 | 0.0 | 1714 |
| MS.gene036740.t1 | MTR_3g033470 | 94.090 | 863 | 51 | 0 | 2 | 864 | 14 | 876 | 0.0 | 1645 |
| MS.gene036740.t1 | MTR_5g036370 | 79.838 | 863 | 173 | 1 | 2 | 864 | 15 | 876 | 0.0 | 1389 |
| MS.gene036740.t1 | MTR_5g036330 | 80.000 | 65 | 13 | 0 | 800 | 864 | 1 | 65 | 1.20e-24 | 103 |
| MS.gene036740.t1 | MTR_4g036760 | 22.115 | 520 | 336 | 17 | 10 | 484 | 23 | 518 | 1.97e-12 | 71.6 |
| MS.gene036740.t1 | MTR_4g061050 | 22.646 | 393 | 237 | 12 | 10 | 350 | 22 | 399 | 2.06e-12 | 71.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene036740.t1 | AT5G15920 | 57.474 | 863 | 367 | 0 | 2 | 864 | 13 | 875 | 0.0 | 979 |
| MS.gene036740.t1 | AT3G47460 | 24.270 | 445 | 272 | 18 | 11 | 412 | 2 | 424 | 4.02e-15 | 80.5 |
| MS.gene036740.t1 | AT3G47460 | 24.270 | 445 | 272 | 18 | 11 | 412 | 2 | 424 | 4.88e-15 | 80.5 |
| MS.gene036740.t1 | AT5G07660 | 22.078 | 539 | 307 | 17 | 10 | 480 | 21 | 514 | 1.03e-13 | 75.9 |
| MS.gene036740.t1 | AT5G61460 | 22.984 | 248 | 172 | 5 | 2 | 232 | 7 | 252 | 1.94e-11 | 68.6 |
Find 176 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAACTAGTAATTCCCAATTT+TGG | 0.071387 | 8.3:+12741583 | None:intergenic |
| AATTGGGAATTACTAGTTTA+TGG | 0.115202 | 8.3:-12741579 | MS.gene036740:CDS |
| ATGTTTGCAATTCAGTTTAT+TGG | 0.153564 | 8.3:-12741640 | MS.gene036740:intron |
| TTGTAATGTGGTCCTCTTTA+TGG | 0.158896 | 8.3:+12750847 | None:intergenic |
| CATAAGTTCCATTCTCTTCT+TGG | 0.172420 | 8.3:+12745177 | None:intergenic |
| CCATAATGCAATTAAAATTA+AGG | 0.190460 | 8.3:-12740752 | MS.gene036740:intron |
| AGCTGATGGGGTCCCAAAAT+TGG | 0.195674 | 8.3:-12741596 | MS.gene036740:CDS |
| GAATTCCACAAGGAGGTTTA+TGG | 0.213065 | 8.3:-12743008 | MS.gene036740:CDS |
| CCTCGTTTGAATCTTGTAAT+TGG | 0.249135 | 8.3:-12751020 | MS.gene036740:CDS |
| ATATATACCTCAACTAAAAC+TGG | 0.257058 | 8.3:+12742984 | None:intergenic |
| AGGAAATATTGTGTCCAAAA+AGG | 0.267057 | 8.3:-12750673 | MS.gene036740:CDS |
| CTTACACTGGCAGATATTTC+AGG | 0.274674 | 8.3:+12741919 | None:intergenic |
| TTGTGGCTCGCCCAAGCAAC+TGG | 0.291859 | 8.3:+12750934 | None:intergenic |
| ATATGTTACTATTGACAAAA+AGG | 0.292338 | 8.3:+12735959 | None:intergenic |
| TTTCAGGAGGCGGCTCTCTT+TGG | 0.296447 | 8.3:+12741935 | None:intergenic |
| GTTAACTCCTGTGCAACTTC+TGG | 0.299299 | 8.3:-12749359 | MS.gene036740:CDS |
| TCTTGGCATTGTCACTTATT+CGG | 0.308112 | 8.3:+12745194 | None:intergenic |
| TACAAGGTGTCTAGCTGAAT+TGG | 0.321585 | 8.3:-12735793 | MS.gene036740:CDS |
| TCGATTTCTAAAATGTTTCC+AGG | 0.328193 | 8.3:+12751089 | None:intergenic |
| TGTGGAGAGCCCCAGTTGCT+TGG | 0.330455 | 8.3:-12750945 | MS.gene036740:CDS |
| CTTGTATGTGCTATTGCTCT+TGG | 0.333455 | 8.3:-12750972 | MS.gene036740:CDS |
| GTAATTGGTCCAAATGGTTC+TGG | 0.335279 | 8.3:-12751005 | MS.gene036740:CDS |
| TCCTCGCGATCGGGACTTCT+TGG | 0.345479 | 8.3:-12742013 | MS.gene036740:CDS |
| TCAAGAACAAATTGCTTCCT+TGG | 0.346731 | 8.3:-12741298 | MS.gene036740:CDS |
| GGAAAGAAGCTTTGTGAATC+AGG | 0.346798 | 8.3:-12741247 | MS.gene036740:CDS |
| CAAGAAGAGAATGGAACTTA+TGG | 0.353352 | 8.3:-12745176 | MS.gene036740:CDS |
| CACACAATTGTTAGGCGTAT+TGG | 0.355854 | 8.3:-12740976 | MS.gene036740:intron |
| GTTAAGCGGGGAGAAGATTC+TGG | 0.359942 | 8.3:-12750897 | MS.gene036740:CDS |
| TTGAATGCATTGCGAGCATC+TGG | 0.363018 | 8.3:-12743080 | MS.gene036740:CDS |
| GAAAGGATAACATACTTAAT+AGG | 0.371771 | 8.3:+12748679 | None:intergenic |
| TGGGCGAGCCACAAGTATTC+AGG | 0.373583 | 8.3:-12750925 | MS.gene036740:CDS |
| ATTAGATGCAAAATGCAAAA+AGG | 0.379223 | 8.3:-12745224 | MS.gene036740:CDS |
| AACCCATTCGGACTTGTTGC+TGG | 0.386205 | 8.3:+12750806 | None:intergenic |
| GTTAGCGAAGCTTGTTGATC+AGG | 0.387800 | 8.3:-12740800 | MS.gene036740:CDS |
| AACACCTCCTTGACAGCAAC+AGG | 0.393672 | 8.3:+12741765 | None:intergenic |
| TGGCTTGAGAAGTGGTATCT+TGG | 0.394588 | 8.3:+12735989 | None:intergenic |
| AGCTGAATTGGATAACATTA+AGG | 0.394602 | 8.3:-12735781 | None:intergenic |
| TCGTCCCTGGGAGGTTCATA+AGG | 0.408980 | 8.3:+12744785 | None:intergenic |
| GTGGAGAGCCCCAGTTGCTT+GGG | 0.411204 | 8.3:-12750944 | MS.gene036740:CDS |
| GTCAAGTTGCTTGGTACACT+TGG | 0.416024 | 8.3:-12742852 | MS.gene036740:CDS |
| GAACTCTTTCCAGAACCATT+TGG | 0.417559 | 8.3:+12750996 | None:intergenic |
| AATCTTGTAATTGGTCCAAA+TGG | 0.420339 | 8.3:-12751011 | MS.gene036740:CDS |
| TCGCAATGCATTCAAACATT+TGG | 0.421158 | 8.3:+12743088 | None:intergenic |
| CTTGAGTCAAATTATTCACT+TGG | 0.426528 | 8.3:+12750619 | None:intergenic |
| TGATGCTCCTGTTGCTGTCA+AGG | 0.428280 | 8.3:-12741772 | MS.gene036740:CDS |
| TTGTAAAATTTGCAGGTTGA+AGG | 0.428383 | 8.3:-12743129 | MS.gene036740:intron |
| TACAAGATTCAAACGAGGCC+CGG | 0.429671 | 8.3:+12751025 | None:intergenic |
| GCTGATGGGGTCCCAAAATT+GGG | 0.435739 | 8.3:-12741595 | MS.gene036740:CDS |
| TGACCAGTATAATTTAAAAC+TGG | 0.439540 | 8.3:+12741964 | None:intergenic |
| CCTCTCTTTACACTTCGTTA+AGG | 0.444182 | 8.3:+12743222 | None:intergenic |
| AACACAGGATCCTCGCGATC+GGG | 0.446970 | 8.3:-12742022 | MS.gene036740:CDS |
| AAGAGCGACACACAATTGTT+AGG | 0.450101 | 8.3:-12740984 | MS.gene036740:CDS |
| TCTTGGTATCCACTCTCGTT+TGG | 0.452473 | 8.3:-12741805 | MS.gene036740:CDS |
| GGAATTCATTGCGATGCTCT+TGG | 0.454784 | 8.3:+12743024 | None:intergenic |
| GAGAGAGGGAATTGTGGAGT+TGG | 0.462077 | 8.3:-12743314 | MS.gene036740:CDS |
| TACACTTACAATCTCGTCCC+TGG | 0.462433 | 8.3:+12744772 | None:intergenic |
| GCCTACTACAATTGAGGAGT+TGG | 0.468182 | 8.3:-12736022 | MS.gene036740:CDS |
| CCACATTAAGATTACCTTGA+GGG | 0.468408 | 8.3:-12750874 | MS.gene036740:CDS |
| GGGGAGGACGATTATATGCC+TGG | 0.469811 | 8.3:-12751107 | MS.gene036740:CDS |
| TGACCTCTAGAACAAAAGAA+AGG | 0.471193 | 8.3:-12740865 | MS.gene036740:intron |
| CTCTTTATGGTCTCCCCTCA+AGG | 0.471519 | 8.3:+12750860 | None:intergenic |
| TCTCTAGGTCAGGTGTAAGC+CGG | 0.473174 | 8.3:+12737928 | None:intergenic |
| CATTGAGGATCTGAGCTCTC+AGG | 0.475053 | 8.3:-12741331 | MS.gene036740:CDS |
| CTGAATGATCAAGATTAGAT+TGG | 0.476451 | 8.3:+12741736 | None:intergenic |
| CGCACCATTTAAAACCCATT+CGG | 0.477193 | 8.3:+12750794 | None:intergenic |
| TAACATATTGGAACAATATG+AGG | 0.481109 | 8.3:-12735944 | MS.gene036740:CDS |
| GAAAGGGAAACTGAAATCAA+TGG | 0.483404 | 8.3:-12740848 | MS.gene036740:CDS |
| GCGTGAGAAGGCTGCAGCAA+AGG | 0.487162 | 8.3:-12748743 | MS.gene036740:CDS |
| TCTTACCAGATGCGTGCTCT+TGG | 0.489873 | 8.3:-12741822 | MS.gene036740:intron |
| TGTGGCTCGCCCAAGCAACT+GGG | 0.491862 | 8.3:+12750935 | None:intergenic |
| TTGGATGTTAAACCTCTGAA+TGG | 0.494697 | 8.3:+12750638 | None:intergenic |
| TTATAGGAGGTGGAATTACA+AGG | 0.494713 | 8.3:-12744920 | MS.gene036740:intron |
| GATGGACGAGTTGAGGAAGC+AGG | 0.496512 | 8.3:-12744885 | MS.gene036740:CDS |
| AGAAACTCCTTCTCTAGGTC+AGG | 0.497517 | 8.3:+12737918 | None:intergenic |
| ATCTAGAGGGTCAAGTTGCT+TGG | 0.497651 | 8.3:-12742861 | MS.gene036740:CDS |
| GACCTCTAGAACAAAAGAAA+GGG | 0.500734 | 8.3:-12740864 | MS.gene036740:intron |
| ACAAGATTCAAACGAGGCCC+GGG | 0.501384 | 8.3:+12751026 | None:intergenic |
| GTCTCCTCCAGAAGTTGCAC+AGG | 0.501733 | 8.3:+12749352 | None:intergenic |
| TTAGATGCCTACTACAATTG+AGG | 0.503994 | 8.3:-12736028 | MS.gene036740:intron |
| TATTCAGGCATATGTTAAGC+GGG | 0.505121 | 8.3:-12750910 | MS.gene036740:CDS |
| CTCTAGGTCAGGTGTAAGCC+GGG | 0.513332 | 8.3:+12737929 | None:intergenic |
| ATAAGTGCACGATGTTGCTC+TGG | 0.514176 | 8.3:+12749301 | None:intergenic |
| TCCAACTCCTCAATTGTAGT+AGG | 0.515741 | 8.3:+12736021 | None:intergenic |
| CACCAGCAACAAGTCCGAAT+GGG | 0.515780 | 8.3:-12750808 | MS.gene036740:CDS |
| TAACACAGGATCCTCGCGAT+CGG | 0.516924 | 8.3:-12742023 | MS.gene036740:CDS |
| TAGACTGAGAGAGGGAATTG+TGG | 0.518288 | 8.3:-12743320 | MS.gene036740:CDS |
| AGCAGCTGCAAGATCCTCCC+TGG | 0.521507 | 8.3:+12744832 | None:intergenic |
| CGTCCCTGGGAGGTTCATAA+GGG | 0.524888 | 8.3:+12744786 | None:intergenic |
| CTCACAGTTATTATAATGCA+AGG | 0.526253 | 8.3:+12738085 | None:intergenic |
| CACCAGAAAATCACTATCAC+TGG | 0.529781 | 8.3:-12741555 | MS.gene036740:CDS |
| AACAAAACTTCGTCTGTGAC+CGG | 0.530466 | 8.3:+12740130 | None:intergenic |
| TTTAAATGTGAGGGACATTG+AGG | 0.531854 | 8.3:-12741346 | MS.gene036740:CDS |
| TGCATTGAAGCATGTCGAGC+TGG | 0.531870 | 8.3:-12749266 | MS.gene036740:intron |
| AGGATCTGAGCTCTCAGGAA+AGG | 0.533410 | 8.3:-12741326 | MS.gene036740:CDS |
| GATCTTCTTGTTGAAGCTGC+CGG | 0.536018 | 8.3:-12740149 | MS.gene036740:CDS |
| GTCTCAGATCAATCTCATGC+TGG | 0.536098 | 8.3:-12742886 | MS.gene036740:CDS |
| TGACAATGCCAAGAAGAGAA+TGG | 0.536503 | 8.3:-12745185 | MS.gene036740:CDS |
| ACTTCTGGAGGAGACAGAAA+AGG | 0.536693 | 8.3:-12749344 | MS.gene036740:CDS |
| ACAAAGAGATGGACGAGTTG+AGG | 0.537247 | 8.3:-12744892 | MS.gene036740:CDS |
| AGAACAAATTGCTTCCTTGG+AGG | 0.538282 | 8.3:-12741295 | MS.gene036740:CDS |
| TTTCATTGAATTTGATGCGA+AGG | 0.538666 | 8.3:-12740093 | MS.gene036740:intron |
| CCTCAAGAAACTCCTTCTCT+AGG | 0.539854 | 8.3:+12737913 | None:intergenic |
| CACTGGTCTAAGTCTAGATA+CGG | 0.540867 | 8.3:-12741538 | MS.gene036740:CDS |
| GGATCTGAGCTCTCAGGAAA+GGG | 0.543244 | 8.3:-12741325 | MS.gene036740:CDS |
| GGCTGAATATCGTGAAGCTA+AGG | 0.546055 | 8.3:-12748767 | MS.gene036740:CDS |
| GATTGAATTGGCTTGAGAAG+TGG | 0.546837 | 8.3:+12735981 | None:intergenic |
| CCTAGAGAAGGAGTTTCTTG+AGG | 0.547117 | 8.3:-12737913 | MS.gene036740:intron |
| AGGAACGTTAAATCAGTTGA+AGG | 0.548907 | 8.3:-12749137 | MS.gene036740:CDS |
| GATTACTTAAAATGTAAACC+CGG | 0.551566 | 8.3:-12751044 | MS.gene036740:CDS |
| CTATTTAGATTTAAATGTGA+GGG | 0.555671 | 8.3:-12741355 | MS.gene036740:intron |
| GAAACTGATCAGAAAGCTGA+TGG | 0.558582 | 8.3:-12741610 | MS.gene036740:CDS |
| ACCAAGAAGTCCCGATCGCG+AGG | 0.563088 | 8.3:+12742012 | None:intergenic |
| ACTTCTTGGTGAACAACCTA+CGG | 0.563548 | 8.3:-12741999 | MS.gene036740:CDS |
| AAAACTTGACGCAGACAAGA+AGG | 0.566349 | 8.3:-12735820 | MS.gene036740:CDS |
| AACTCCTGTGCAACTTCTGG+AGG | 0.567386 | 8.3:-12749356 | MS.gene036740:CDS |
| CTGGTACATCGTAGTTCCGT+AGG | 0.569457 | 8.3:+12741983 | None:intergenic |
| ATATGAGGCTCGTCAAAGAC+AGG | 0.575148 | 8.3:-12735929 | MS.gene036740:intron |
| CTGGCAGATATTTCAGGAGG+CGG | 0.577228 | 8.3:+12741925 | None:intergenic |
| TGAATGCATTGCGAGCATCT+GGG | 0.577407 | 8.3:-12743079 | MS.gene036740:CDS |
| GGAGCAAGATGATTTAGATA+CGG | 0.577701 | 8.3:-12740824 | MS.gene036740:CDS |
| TGCAGCAAAGGAGTTTGAGA+AGG | 0.578267 | 8.3:-12748731 | MS.gene036740:CDS |
| TAAGCCCTTATGAACCTCCC+AGG | 0.579212 | 8.3:-12744790 | MS.gene036740:CDS |
| ATACTATTCGTTAGAAGTCG+AGG | 0.581328 | 8.3:+12741478 | None:intergenic |
| TGCTAATCTTCGTAAACAGA+TGG | 0.581408 | 8.3:-12741223 | MS.gene036740:intron |
| ACACCAGCAACAAGTCCGAA+TGG | 0.583784 | 8.3:-12750809 | MS.gene036740:CDS |
| ATCTCATGCTGGATATCTAG+AGG | 0.584471 | 8.3:-12742875 | MS.gene036740:CDS |
| GTGGCTCGCCCAAGCAACTG+GGG | 0.587278 | 8.3:+12750936 | None:intergenic |
| AAACTGATCAGAAAGCTGAT+GGG | 0.587636 | 8.3:-12741609 | MS.gene036740:CDS |
| GAGGAGACAGAAAAGGCTGT+TGG | 0.588449 | 8.3:-12749337 | MS.gene036740:CDS |
| TGAAGCTAAGGAGCGTGAGA+AGG | 0.588670 | 8.3:-12748755 | MS.gene036740:CDS |
| CACATTAAGATTACCTTGAG+GGG | 0.589481 | 8.3:-12750873 | MS.gene036740:CDS |
| TATAGGAGGTGGAATTACAA+GGG | 0.590156 | 8.3:-12744919 | MS.gene036740:intron |
| ACACTTACAATCTCGTCCCT+GGG | 0.590941 | 8.3:+12744773 | None:intergenic |
| AACATATGCCTGAATACTTG+TGG | 0.591214 | 8.3:+12750917 | None:intergenic |
| CGATGTTGCTCTGGAAGTCG+TGG | 0.594129 | 8.3:+12749310 | None:intergenic |
| AGTTGCTTGGTACACTTGGA+AGG | 0.595673 | 8.3:-12742848 | MS.gene036740:intron |
| GAATGCATTGCGAGCATCTG+GGG | 0.596596 | 8.3:-12743078 | MS.gene036740:CDS |
| CTGGGCCATAAACCTCCTTG+TGG | 0.598562 | 8.3:+12743003 | None:intergenic |
| GCTATTGCTCTTGGCCTCTG+TGG | 0.599361 | 8.3:-12750963 | MS.gene036740:CDS |
| ACTATGCTAAGTCAATTGCC+CGG | 0.602381 | 8.3:-12737947 | MS.gene036740:CDS |
| TTCATATCATACTTCAGCCA+TGG | 0.606096 | 8.3:+12748793 | None:intergenic |
| ACAAGGGAAGTACAAAGAGA+TGG | 0.607131 | 8.3:-12744903 | MS.gene036740:CDS |
| ATTACTTAAAATGTAAACCC+GGG | 0.608024 | 8.3:-12751043 | MS.gene036740:CDS |
| ACGTAATGCTGAATTAGAGA+AGG | 0.611337 | 8.3:-12749113 | MS.gene036740:CDS |
| CCCTCAAGGTAATCTTAATG+TGG | 0.612636 | 8.3:+12750874 | None:intergenic |
| AATGCAGTCTTTCATAACAC+AGG | 0.612682 | 8.3:-12742037 | MS.gene036740:intron |
| AAATTTGGTCCAAACGAGAG+TGG | 0.614111 | 8.3:+12741796 | None:intergenic |
| AACTGATCAGAAAGCTGATG+GGG | 0.617295 | 8.3:-12741608 | MS.gene036740:CDS |
| TACTATTCGTTAGAAGTCGA+GGG | 0.619562 | 8.3:+12741479 | None:intergenic |
| GCTGAAGTATGATATGAAGC+AGG | 0.623097 | 8.3:-12748788 | MS.gene036740:CDS |
| AAGCCCTTATGAACCTCCCA+GGG | 0.623592 | 8.3:-12744789 | MS.gene036740:CDS |
| TTACCAGCATAGACTGAGAG+AGG | 0.623689 | 8.3:-12743329 | MS.gene036740:intron |
| AACTCACAGACCCTGTCTTG+CGG | 0.625196 | 8.3:+12749388 | None:intergenic |
| AAGAGATGAACTTCTTACCA+AGG | 0.627529 | 8.3:-12749071 | MS.gene036740:intron |
| TATATACCTCAACTAAAACT+GGG | 0.630623 | 8.3:+12742985 | None:intergenic |
| GTATTCAGGCATATGTTAAG+CGG | 0.631374 | 8.3:-12750911 | MS.gene036740:CDS |
| TCTTTAGATTGGAGAAGCGG+AGG | 0.635604 | 8.3:-12738147 | MS.gene036740:intron |
| CAGACAAGAAGGAATCTACA+AGG | 0.636775 | 8.3:-12735809 | MS.gene036740:CDS |
| ACTATTTAGATTTAAATGTG+AGG | 0.637084 | 8.3:-12741356 | MS.gene036740:intron |
| GCTTACACCTGACCTAGAGA+AGG | 0.644116 | 8.3:-12737925 | MS.gene036740:CDS |
| TGCTCCTGTTGCTGTCAAGG+AGG | 0.645592 | 8.3:-12741769 | MS.gene036740:CDS |
| TGAGGAAGCAGGAAGAAACT+CGG | 0.649381 | 8.3:-12744874 | MS.gene036740:CDS |
| ATGTGGCTGAAACCATTCAG+AGG | 0.657774 | 8.3:-12750650 | MS.gene036740:CDS |
| CTTGAGGGGAGACCATAAAG+AGG | 0.657956 | 8.3:-12750859 | MS.gene036740:CDS |
| TCTCATGCTGGATATCTAGA+GGG | 0.660256 | 8.3:-12742874 | MS.gene036740:CDS |
| TACCAGCATAGACTGAGAGA+GGG | 0.661024 | 8.3:-12743328 | MS.gene036740:intron |
| GCCACATTAAGATTACCTTG+AGG | 0.663315 | 8.3:-12750875 | MS.gene036740:CDS |
| CCTTAACGAAGTGTAAAGAG+AGG | 0.670095 | 8.3:-12743222 | MS.gene036740:intron |
| GCAACTGGGGCTCTCCACAG+AGG | 0.677915 | 8.3:+12750949 | None:intergenic |
| AGGGAAACTGAAATCAATGG+AGG | 0.685531 | 8.3:-12740845 | MS.gene036740:CDS |
| ACACTGGCAGATATTTCAGG+AGG | 0.694512 | 8.3:+12741922 | None:intergenic |
| ATTCAGGCATATGTTAAGCG+GGG | 0.703853 | 8.3:-12750909 | MS.gene036740:CDS |
| GCATCGCAATGAATTCCACA+AGG | 0.709183 | 8.3:-12743018 | MS.gene036740:CDS |
| TCGCAATGAATTCCACAAGG+AGG | 0.709820 | 8.3:-12743015 | MS.gene036740:CDS |
| CTTACAATCTCGTCCCTGGG+AGG | 0.709951 | 8.3:+12744776 | None:intergenic |
| CCAATTACAAGATTCAAACG+AGG | 0.754949 | 8.3:+12751020 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 12735782 | 12751379 | 12735782 | ID=MS.gene036740 |
| chr8.3 | mRNA | 12735782 | 12751379 | 12735782 | ID=MS.gene036740.t1;Parent=MS.gene036740 |
| chr8.3 | exon | 12751375 | 12751379 | 12751375 | ID=MS.gene036740.t1.exon1;Parent=MS.gene036740.t1 |
| chr8.3 | CDS | 12751375 | 12751379 | 12751375 | ID=cds.MS.gene036740.t1;Parent=MS.gene036740.t1 |
| chr8.3 | exon | 12750799 | 12751130 | 12750799 | ID=MS.gene036740.t1.exon2;Parent=MS.gene036740.t1 |
| chr8.3 | CDS | 12750799 | 12751130 | 12750799 | ID=cds.MS.gene036740.t1;Parent=MS.gene036740.t1 |
| chr8.3 | exon | 12750620 | 12750693 | 12750620 | ID=MS.gene036740.t1.exon3;Parent=MS.gene036740.t1 |
| chr8.3 | CDS | 12750620 | 12750693 | 12750620 | ID=cds.MS.gene036740.t1;Parent=MS.gene036740.t1 |
| chr8.3 | exon | 12749267 | 12749416 | 12749267 | ID=MS.gene036740.t1.exon4;Parent=MS.gene036740.t1 |
| chr8.3 | CDS | 12749267 | 12749416 | 12749267 | ID=cds.MS.gene036740.t1;Parent=MS.gene036740.t1 |
| chr8.3 | exon | 12749072 | 12749176 | 12749072 | ID=MS.gene036740.t1.exon5;Parent=MS.gene036740.t1 |
| chr8.3 | CDS | 12749072 | 12749176 | 12749072 | ID=cds.MS.gene036740.t1;Parent=MS.gene036740.t1 |
| chr8.3 | exon | 12748694 | 12748839 | 12748694 | ID=MS.gene036740.t1.exon6;Parent=MS.gene036740.t1 |
| chr8.3 | CDS | 12748694 | 12748839 | 12748694 | ID=cds.MS.gene036740.t1;Parent=MS.gene036740.t1 |
| chr8.3 | exon | 12745159 | 12745270 | 12745159 | ID=MS.gene036740.t1.exon7;Parent=MS.gene036740.t1 |
| chr8.3 | CDS | 12745159 | 12745270 | 12745159 | ID=cds.MS.gene036740.t1;Parent=MS.gene036740.t1 |
| chr8.3 | exon | 12744781 | 12744936 | 12744781 | ID=MS.gene036740.t1.exon8;Parent=MS.gene036740.t1 |
| chr8.3 | CDS | 12744781 | 12744936 | 12744781 | ID=cds.MS.gene036740.t1;Parent=MS.gene036740.t1 |
| chr8.3 | exon | 12743223 | 12743344 | 12743223 | ID=MS.gene036740.t1.exon9;Parent=MS.gene036740.t1 |
| chr8.3 | CDS | 12743223 | 12743344 | 12743223 | ID=cds.MS.gene036740.t1;Parent=MS.gene036740.t1 |
| chr8.3 | exon | 12742992 | 12743136 | 12742992 | ID=MS.gene036740.t1.exon10;Parent=MS.gene036740.t1 |
| chr8.3 | CDS | 12742992 | 12743136 | 12742992 | ID=cds.MS.gene036740.t1;Parent=MS.gene036740.t1 |
| chr8.3 | exon | 12742849 | 12742914 | 12742849 | ID=MS.gene036740.t1.exon11;Parent=MS.gene036740.t1 |
| chr8.3 | CDS | 12742849 | 12742914 | 12742849 | ID=cds.MS.gene036740.t1;Parent=MS.gene036740.t1 |
| chr8.3 | exon | 12741924 | 12742052 | 12741924 | ID=MS.gene036740.t1.exon12;Parent=MS.gene036740.t1 |
| chr8.3 | CDS | 12741924 | 12742052 | 12741924 | ID=cds.MS.gene036740.t1;Parent=MS.gene036740.t1 |
| chr8.3 | exon | 12741737 | 12741835 | 12741737 | ID=MS.gene036740.t1.exon13;Parent=MS.gene036740.t1 |
| chr8.3 | CDS | 12741737 | 12741835 | 12741737 | ID=cds.MS.gene036740.t1;Parent=MS.gene036740.t1 |
| chr8.3 | exon | 12741482 | 12741647 | 12741482 | ID=MS.gene036740.t1.exon14;Parent=MS.gene036740.t1 |
| chr8.3 | CDS | 12741482 | 12741647 | 12741482 | ID=cds.MS.gene036740.t1;Parent=MS.gene036740.t1 |
| chr8.3 | exon | 12741224 | 12741369 | 12741224 | ID=MS.gene036740.t1.exon15;Parent=MS.gene036740.t1 |
| chr8.3 | CDS | 12741224 | 12741369 | 12741224 | ID=cds.MS.gene036740.t1;Parent=MS.gene036740.t1 |
| chr8.3 | exon | 12740977 | 12741040 | 12740977 | ID=MS.gene036740.t1.exon16;Parent=MS.gene036740.t1 |
| chr8.3 | CDS | 12740977 | 12741040 | 12740977 | ID=cds.MS.gene036740.t1;Parent=MS.gene036740.t1 |
| chr8.3 | exon | 12740753 | 12740877 | 12740753 | ID=MS.gene036740.t1.exon17;Parent=MS.gene036740.t1 |
| chr8.3 | CDS | 12740753 | 12740877 | 12740753 | ID=cds.MS.gene036740.t1;Parent=MS.gene036740.t1 |
| chr8.3 | exon | 12740094 | 12740171 | 12740094 | ID=MS.gene036740.t1.exon18;Parent=MS.gene036740.t1 |
| chr8.3 | CDS | 12740094 | 12740171 | 12740094 | ID=cds.MS.gene036740.t1;Parent=MS.gene036740.t1 |
| chr8.3 | exon | 12738090 | 12738162 | 12738090 | ID=MS.gene036740.t1.exon19;Parent=MS.gene036740.t1 |
| chr8.3 | CDS | 12738090 | 12738162 | 12738090 | ID=cds.MS.gene036740.t1;Parent=MS.gene036740.t1 |
| chr8.3 | exon | 12737914 | 12738017 | 12737914 | ID=MS.gene036740.t1.exon20;Parent=MS.gene036740.t1 |
| chr8.3 | CDS | 12737914 | 12738017 | 12737914 | ID=cds.MS.gene036740.t1;Parent=MS.gene036740.t1 |
| chr8.3 | exon | 12735930 | 12736046 | 12735930 | ID=MS.gene036740.t1.exon21;Parent=MS.gene036740.t1 |
| chr8.3 | CDS | 12735930 | 12736046 | 12735930 | ID=cds.MS.gene036740.t1;Parent=MS.gene036740.t1 |
| chr8.3 | exon | 12735782 | 12735859 | 12735782 | ID=MS.gene036740.t1.exon22;Parent=MS.gene036740.t1 |
| chr8.3 | CDS | 12735782 | 12735859 | 12735782 | ID=cds.MS.gene036740.t1;Parent=MS.gene036740.t1 |
| Gene Sequence |
| Protein sequence |
