AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene038979

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene038979.t1 MTR_2g064405 97.964 393 6 2 1 391 1 393 0.0 787
MS.gene038979.t1 MTR_2g064405 99.367 316 2 0 76 391 1 316 0.0 652
MS.gene038979.t1 MTR_8g046550 78.372 393 76 3 2 391 8 394 0.0 615
MS.gene038979.t1 MTR_3g080090 65.823 395 122 2 2 388 7 396 0.0 525
MS.gene038979.t1 MTR_7g022890 61.680 381 137 5 12 387 19 395 6.98e-160 455
MS.gene038979.t1 MTR_7g022890 65.269 334 114 2 55 387 10 342 3.51e-156 444
MS.gene038979.t1 MTR_3g062610 56.707 328 135 4 61 387 72 393 1.47e-127 373
MS.gene038979.t1 MTR_5g075680 54.268 328 143 4 61 387 12 333 8.13e-121 353
MS.gene038979.t1 MTR_5g075680 52.890 346 151 5 44 388 53 387 1.85e-120 355
MS.gene038979.t1 MTR_3g062610 52.564 234 105 3 61 293 72 300 4.21e-80 249
MS.gene038979.t1 MTR_5g075680 46.067 267 132 5 44 309 53 308 9.63e-72 227
MS.gene038979.t1 MTR_5g075680 42.289 201 105 4 44 243 53 243 4.09e-43 150
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene038979.t1 AT1G16310 76.280 371 86 1 20 390 60 428 0.0 578
MS.gene038979.t1 AT1G79520 71.916 381 102 2 14 391 24 402 0.0 545
MS.gene038979.t1 AT1G79520 69.720 393 102 3 14 391 24 414 0.0 536
MS.gene038979.t1 AT1G79520 76.765 340 79 0 52 391 10 349 0.0 536
MS.gene038979.t1 AT1G79520 76.765 340 79 0 52 391 10 349 0.0 536
MS.gene038979.t1 AT1G16310 79.365 315 65 0 76 390 1 315 0.0 511
MS.gene038979.t1 AT2G39450 58.673 392 155 4 2 390 5 392 4.55e-140 405
MS.gene038979.t1 AT3G58060 54.381 331 147 3 61 387 71 401 4.97e-122 359
MS.gene038979.t1 AT3G58060 54.381 331 147 3 61 387 71 401 4.97e-122 359

Find 67 sgRNAs with CRISPR-Local

Find 202 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAAGTTAACATACCTTATA+TGG 0.187659 2.4:+28653955 MS.gene038979:CDS
ATCATCCAATTCACCTTTAC+TGG 0.222158 2.4:-28652942 None:intergenic
GTTCATGGTGGTTCCATATA+AGG 0.230476 2.4:-28653968 None:intergenic
ACAAAAGCTCTTTCAACTTC+TGG 0.237828 2.4:-28654134 None:intergenic
TTCTAGCTGTTAAGTTCTTC+TGG 0.238347 2.4:+28653105 MS.gene038979:CDS
GTTAACTTTGCCAAGAATTC+AGG 0.263487 2.4:-28653942 None:intergenic
ATGAAGTTTCAAACGGTTCT+TGG 0.284276 2.4:+28650250 MS.gene038979:CDS
AACAGCGCCACCTGAATTCT+TGG 0.289826 2.4:+28653932 MS.gene038979:CDS
CTATGTGCTTGATTTGTTCA+TGG 0.301014 2.4:-28653983 None:intergenic
GAATTGGATGATCGGGATTA+TGG 0.321624 2.4:+28652953 MS.gene038979:CDS
TTCCAATCGGATAGTGATAT+CGG 0.334945 2.4:-28652575 None:intergenic
CTTGGTGCTGTTTGCAGCTA+AGG 0.338997 2.4:+28652434 MS.gene038979:CDS
ACCTTTACTGGATCGACTTC+TGG 0.344775 2.4:-28652930 None:intergenic
ATCAACACTAGATTCTCTTT+TGG 0.352558 2.4:+28652497 MS.gene038979:CDS
CTCTTGTTTCTTGTAATACT+CGG 0.363210 2.4:-28651885 None:intergenic
TGCATCTGTGATGGCAACCT+TGG 0.370710 2.4:+28652739 MS.gene038979:CDS
AAATCTAAGTTTAGTTTCAA+TGG 0.375459 2.4:+28650330 MS.gene038979:CDS
TCGATCCAGTAAAGGTGAAT+TGG 0.389302 2.4:+28652937 MS.gene038979:CDS
GCATCTGTGATGGCAACCTT+GGG 0.393058 2.4:+28652740 MS.gene038979:CDS
TCTTGTCTGGTTTCATATTG+TGG 0.420819 2.4:+28652523 MS.gene038979:CDS
AGACAGTGATGGAGAATGTT+TGG 0.426193 2.4:+28653895 MS.gene038979:CDS
CCTCGAAGGATTTAATGAAA+TGG 0.427590 2.4:+28651913 MS.gene038979:CDS
TGGTTGAGAAACATGTCTTC+TGG 0.431572 2.4:-28654065 None:intergenic
ATCACCTCAGAGAGACCTCC+TGG 0.432671 2.4:-28651962 None:intergenic
TTGCAGATTCTGATCGAGTC+TGG 0.437238 2.4:+28652764 MS.gene038979:CDS
GTTTGGCTTGCTCATGGCAT+TGG 0.439654 2.4:-28652553 None:intergenic
CCATTTCATTAAATCCTTCG+AGG 0.445178 2.4:-28651913 None:intergenic
ACTGTTAGAGCATACACATT+TGG 0.445868 2.4:+28654008 MS.gene038979:CDS
CTTCTTGATGAAGTTTCAAA+CGG 0.448380 2.4:+28650243 MS.gene038979:CDS
ATGGAAGCTATGCATGAAAC+TGG 0.456771 2.4:+28651932 MS.gene038979:CDS
TTTCGCCGATGTTGTGTGCT+TGG 0.461751 2.4:-28654085 None:intergenic
ATCGGATAGTGATATCGGTT+TGG 0.466363 2.4:-28652570 None:intergenic
TAAAGGTGAATTGGATGATC+GGG 0.471055 2.4:+28652946 MS.gene038979:CDS
TGGAAAGAAACGCATGCAAC+CGG 0.477866 2.4:+28652593 MS.gene038979:CDS
TGCATGCGTTTCTTTCCAAT+CGG 0.484472 2.4:-28652588 None:intergenic
TGTTAAGTTCTTCTGGTGGA+TGG 0.496075 2.4:+28653112 MS.gene038979:CDS
CATACTGATGTCTTATGCTC+AGG 0.504545 2.4:-28654185 None:intergenic
TTCTGGTGGATGGATCCAAC+AGG 0.504950 2.4:+28653122 MS.gene038979:CDS
AACCGATATCACTATCCGAT+TGG 0.515935 2.4:+28652573 MS.gene038979:CDS
ATATCGGTTTGGCTTGCTCA+TGG 0.516883 2.4:-28652559 None:intergenic
ATTTGGTGCAGATTACTTTG+TGG 0.527294 2.4:+28654025 MS.gene038979:CDS
TAGCTGTTAAGTTCTTCTGG+TGG 0.540400 2.4:+28653108 MS.gene038979:CDS
TTTGAAACTTCATCAAGAAG+AGG 0.542941 2.4:-28650240 None:intergenic
CTTACAAGAATAGCTCCTGT+TGG 0.551242 2.4:-28653137 None:intergenic
GCCAGAAGTCGATCCAGTAA+AGG 0.564036 2.4:+28652929 MS.gene038979:CDS
AACTTTGCCAAGAATTCAGG+TGG 0.564769 2.4:-28653939 None:intergenic
GTAAAGGTGAATTGGATGAT+CGG 0.574495 2.4:+28652945 MS.gene038979:CDS
ACTTGCAAAGAGTGAGAGAA+CGG 0.576146 2.4:+28652386 MS.gene038979:CDS
TGTGTCAAATGCATGTAACT+TGG 0.577630 2.4:+28652416 MS.gene038979:CDS
CACTATATACAATCAACACA+TGG 0.581728 2.4:+28653868 MS.gene038979:CDS
TGGTCGGCAAATTGTTGCAA+AGG 0.586977 2.4:+28652784 MS.gene038979:CDS
GAGAATGTTTGGTCACTCAT+CGG 0.589219 2.4:+28653906 MS.gene038979:CDS
AGTTACATGCATTTGACACA+AGG 0.618803 2.4:-28652413 None:intergenic
TGAGCAACAACATTCTGTGA+TGG 0.623085 2.4:-28650300 None:intergenic
AAACAAGAGAGACTCCTCGA+AGG 0.629592 2.4:+28651899 MS.gene038979:CDS
AGATTCTGATCGAGTCTGGT+CGG 0.630053 2.4:+28652768 MS.gene038979:CDS
CTCAACCAAGCACACAACAT+CGG 0.630772 2.4:+28654080 MS.gene038979:CDS
TCACCTCAGAGAGACCTCCT+GGG 0.631079 2.4:-28651961 None:intergenic
GATCAGAATCTGCAAGCCCA+AGG 0.631411 2.4:-28652756 None:intergenic
GATGTCATTACAAATTCCGT+CGG 0.636279 2.4:+28653068 MS.gene038979:CDS
AACAGCAGCAGCTAATCCGA+CGG 0.637503 2.4:-28653084 None:intergenic
TGTGCTTGATTTGTTCATGG+TGG 0.640773 2.4:-28653980 None:intergenic
TTTCCCAGGAGGTCTCTCTG+AGG 0.647360 2.4:+28651958 MS.gene038979:CDS
CACATGGACAAAGACAGTGA+TGG 0.674860 2.4:+28653884 MS.gene038979:CDS
AAAGAAACGCATGCAACCGG+TGG 0.682244 2.4:+28652596 MS.gene038979:CDS
TGTTTCAGGGAAACAACGCA+AGG 0.686235 2.4:+28651859 MS.gene038979:intron
TTCAGGGAAACAACGCAAGG+TGG 0.700523 2.4:+28651862 MS.gene038979:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAAAAAAATATTATAAATT+AGG - chr2.4:28651202-28651221 None:intergenic 0.0%
!!! AATTTATAATATTTTTTTAA+AGG + chr2.4:28651202-28651221 MS.gene038979:intron 0.0%
!!! TTATTATCAATTTTTTTTTC+AGG + chr2.4:28651606-28651625 MS.gene038979:intron 10.0%
!! ATAGTTTATGTTTAATATCA+AGG - chr2.4:28650775-28650794 None:intergenic 15.0%
!!! ACTTACAATTTTCTTATAAA+CGG + chr2.4:28652007-28652026 MS.gene038979:intron 15.0%
!!! TTCTAAAGTTTATGTTTTTT+TGG + chr2.4:28650392-28650411 MS.gene038979:intron 15.0%
!! AAACAGAAAAGGAATAAAAT+AGG - chr2.4:28650593-28650612 None:intergenic 20.0%
!! AGTTATGGGAAATTTATTAA+TGG - chr2.4:28653242-28653261 None:intergenic 20.0%
!! GCAACAACAAAATAAAATAA+TGG - chr2.4:28651092-28651111 None:intergenic 20.0%
!! TAATGGAAAAATACTAATTG+TGG - chr2.4:28653225-28653244 None:intergenic 20.0%
!! TAGAAAACTTTAAACAGAAA+AGG - chr2.4:28650604-28650623 None:intergenic 20.0%
!! TATTTAGTAGAATTCTCTTA+TGG - chr2.4:28652331-28652350 None:intergenic 20.0%
!! TTAAACAAACCGTTATTATT+CGG - chr2.4:28652204-28652223 None:intergenic 20.0%
!! TTAACTTTATTATGTGAACA+AGG - chr2.4:28651278-28651297 None:intergenic 20.0%
!! TTTATGTTTAATATCAAGGT+GGG - chr2.4:28650771-28650790 None:intergenic 20.0%
!!! AAATCTAAGTTTAGTTTCAA+TGG + chr2.4:28650330-28650349 MS.gene038979:CDS 20.0%
!!! ACTTTTAAATTCTCTGTTTT+TGG + chr2.4:28650829-28650848 MS.gene038979:intron 20.0%
!!! TATCATGATCTTACTTTTTA+AGG - chr2.4:28650879-28650898 None:intergenic 20.0%
!!! TATGAAAATTCTGAAATTTC+TGG + chr2.4:28651332-28651351 MS.gene038979:intron 20.0%
!!! TGCTTTATTGTAATAATAGT+GGG + chr2.4:28650916-28650935 MS.gene038979:intron 20.0%
!!! TTATTTTTCAACTTGCTTTT+AGG + chr2.4:28651656-28651675 MS.gene038979:intron 20.0%
!!! TTGCTTTATTGTAATAATAG+TGG + chr2.4:28650915-28650934 MS.gene038979:intron 20.0%
!!! TTTAATTAGTTCAACTGTTT+TGG + chr2.4:28653539-28653558 MS.gene038979:intron 20.0%
! AAAAGCAAAGAACAACATAA+TGG - chr2.4:28650441-28650460 None:intergenic 25.0%
! AAAATAACTGACCATAGTTA+AGG + chr2.4:28653505-28653524 MS.gene038979:intron 25.0%
! AAAATTGCATTATGTTTGTC+AGG + chr2.4:28652350-28652369 MS.gene038979:intron 25.0%
! AAAGCAAAGAACAACATAAT+GGG - chr2.4:28650440-28650459 None:intergenic 25.0%
! AAATTTAAGAATGACTCACT+AGG - chr2.4:28650369-28650388 None:intergenic 25.0%
! AATCACCAATGTTATCAAAT+AGG - chr2.4:28652255-28652274 None:intergenic 25.0%
! ACACTTTGTAGTAAAAATCT+CGG - chr2.4:28650706-28650725 None:intergenic 25.0%
! AGGAATAAAATAGGTGAAAA+AGG - chr2.4:28650584-28650603 None:intergenic 25.0%
! ATCACCAATGTTATCAAATA+GGG - chr2.4:28652254-28652273 None:intergenic 25.0%
! CAAAGTTAACATACCTTATA+TGG + chr2.4:28653955-28653974 MS.gene038979:CDS 25.0%
! GAACTAATTAAACCTTAAAC+AGG - chr2.4:28653531-28653550 None:intergenic 25.0%
! GACAAAATAATGATGTGTAA+AGG - chr2.4:28651174-28651193 None:intergenic 25.0%
! GTTTATGTTTAATATCAAGG+TGG - chr2.4:28650772-28650791 None:intergenic 25.0%
! TCAAAAGCTACAAATTCTAT+TGG - chr2.4:28651571-28651590 None:intergenic 25.0%
! TTATTATGTGAACAAGGTAA+TGG - chr2.4:28651272-28651291 None:intergenic 25.0%
! TTGATGAATATCCATCATAA+AGG - chr2.4:28650963-28650982 None:intergenic 25.0%
!! AAAACTGATTTAAAGATGCT+TGG + chr2.4:28651505-28651524 MS.gene038979:intron 25.0%
!! AAAGTTTCAATTTTGTGTGA+TGG + chr2.4:28650488-28650507 MS.gene038979:intron 25.0%
!! AAATACTTATGTTTCTATGC+AGG + chr2.4:28652703-28652722 MS.gene038979:intron 25.0%
!! AAGTTTCAATTTTGTGTGAT+GGG + chr2.4:28650489-28650508 MS.gene038979:intron 25.0%
!! AATACTTATGTTTCTATGCA+GGG + chr2.4:28652704-28652723 MS.gene038979:intron 25.0%
!! ACACATACTAGTTTATTAAG+TGG + chr2.4:28651776-28651795 MS.gene038979:intron 25.0%
!! AGTATCATTCTTTTTCTTAC+AGG + chr2.4:28652902-28652921 MS.gene038979:intron 25.0%
!! GCTTTATTGTAATAATAGTG+GGG + chr2.4:28650917-28650936 MS.gene038979:intron 25.0%
!! TCTATTGGAATATTTTCTAG+TGG - chr2.4:28651556-28651575 None:intergenic 25.0%
!! TTAACTATGGTCAGTTATTT+TGG - chr2.4:28653506-28653525 None:intergenic 25.0%
!! TTTGTAGCTTTTGACAATTA+AGG + chr2.4:28651577-28651596 MS.gene038979:intron 25.0%
!!! ATTTTTAAAGCATTGCTTCT+AGG - chr2.4:28653393-28653412 None:intergenic 25.0%
!!! CAATTTTTTTTTCAGGTGAA+GGG + chr2.4:28651613-28651632 MS.gene038979:intron 25.0%
!!! CACTTTTTTTATATGATCGT+TGG + chr2.4:28653774-28653793 MS.gene038979:intron 25.0%
!!! TCAATTTTTTTTTCAGGTGA+AGG + chr2.4:28651612-28651631 MS.gene038979:intron 25.0%
!!! TTTAAATTCTCTGTTTTTGG+TGG + chr2.4:28650832-28650851 MS.gene038979:intron 25.0%
ACACGATTTAGTATAAAGTG+TGG - chr2.4:28652177-28652196 None:intergenic 30.0%
AGGTGAAAAAGGATTAACAA+TGG - chr2.4:28650573-28650592 None:intergenic 30.0%
ATGAATCGATTAGGTTCAAT+TGG - chr2.4:28652279-28652298 None:intergenic 30.0%
CACTATATACAATCAACACA+TGG + chr2.4:28653868-28653887 MS.gene038979:CDS 30.0%
CATCATTAGTACATCAATCA+TGG - chr2.4:28653816-28653835 None:intergenic 30.0%
CATGACTTAAAGTGTATGTT+TGG + chr2.4:28651445-28651464 MS.gene038979:intron 30.0%
CTTCTTGATGAAGTTTCAAA+CGG + chr2.4:28650243-28650262 MS.gene038979:CDS 30.0%
GTGTATGTTTGATATTATCC+TGG + chr2.4:28650656-28650675 MS.gene038979:intron 30.0%
TAAATGAAGAGCCTTTATGA+TGG + chr2.4:28650949-28650968 MS.gene038979:intron 30.0%
TATAAAGTGTGGTCAAATAG+TGG - chr2.4:28652166-28652185 None:intergenic 30.0%
TCACCAATGTTATCAAATAG+GGG - chr2.4:28652253-28652272 None:intergenic 30.0%
TGTGTAAAGGAATTAAGTGA+AGG - chr2.4:28651161-28651180 None:intergenic 30.0%
! AAAGTGTATGTTTGGTTTCA+TGG + chr2.4:28651453-28651472 MS.gene038979:intron 30.0%
! AAGCTTTGATTGTGTACAAA+TGG - chr2.4:28651121-28651140 None:intergenic 30.0%
! AATTGAACCTAATCGATTCA+TGG + chr2.4:28652278-28652297 MS.gene038979:intron 30.0%
! ATCAACACTAGATTCTCTTT+TGG + chr2.4:28652497-28652516 MS.gene038979:CDS 30.0%
! ATGATTGTTTGCTAGTTAGA+GGG + chr2.4:28653330-28653349 MS.gene038979:intron 30.0%
! CTCTTGTTTCTTGTAATACT+CGG - chr2.4:28651888-28651907 None:intergenic 30.0%
! GAATGTGAAGTGTTTATGTT+TGG - chr2.4:28651698-28651717 None:intergenic 30.0%
! TTTGAAACTTCATCAAGAAG+AGG - chr2.4:28650243-28650262 None:intergenic 30.0%
!! CTAGTATGTGTTTGATTTTG+CGG - chr2.4:28651767-28651786 None:intergenic 30.0%
!! TGTACTTCTGAAGTAACTTT+GGG - chr2.4:28653708-28653727 None:intergenic 30.0%
!!! TAATTTTTTACCAGCTTCTC+AGG - chr2.4:28651369-28651388 None:intergenic 30.0%
!!! TTAGTTCAACTGTTTTGGTT+CGG + chr2.4:28653544-28653563 MS.gene038979:intron 30.0%
AAAGGAGTTTACACTCATTG+TGG - chr2.4:28653265-28653284 None:intergenic 35.0%
ACAAAAGCTCTTTCAACTTC+TGG - chr2.4:28654137-28654156 None:intergenic 35.0%
ACATCAAAATGTTGTCGAAG+GGG + chr2.4:28653295-28653314 MS.gene038979:intron 35.0%
ACTGTTAGAGCATACACATT+TGG + chr2.4:28654008-28654027 MS.gene038979:CDS 35.0%
AGTTACATGCATTTGACACA+AGG - chr2.4:28652416-28652435 None:intergenic 35.0%
ATCATCCAATTCACCTTTAC+TGG - chr2.4:28652945-28652964 None:intergenic 35.0%
ATGAAGTTTCAAACGGTTCT+TGG + chr2.4:28650250-28650269 MS.gene038979:CDS 35.0%
CAATCTGCAATACACATTCA+GGG - chr2.4:28653848-28653867 None:intergenic 35.0%
CACATCAAAATGTTGTCGAA+GGG + chr2.4:28653294-28653313 MS.gene038979:intron 35.0%
CCATTTCATTAAATCCTTCG+AGG - chr2.4:28651916-28651935 None:intergenic 35.0%
CCTCGAAGGATTTAATGAAA+TGG + chr2.4:28651913-28651932 MS.gene038979:CDS 35.0%
CGTGTATTGCCGAATAATAA+CGG + chr2.4:28652192-28652211 MS.gene038979:intron 35.0%
GATGTCATTACAAATTCCGT+CGG + chr2.4:28653068-28653087 MS.gene038979:CDS 35.0%
GTAAAGGTGAATTGGATGAT+CGG + chr2.4:28652945-28652964 MS.gene038979:CDS 35.0%
GTTAACTTTGCCAAGAATTC+AGG - chr2.4:28653945-28653964 None:intergenic 35.0%
TAAAGGTGAATTGGATGATC+GGG + chr2.4:28652946-28652965 MS.gene038979:CDS 35.0%
TACACTCATTGTGGAGTTAT+GGG - chr2.4:28653256-28653275 None:intergenic 35.0%
TACATGTCCATGAATCGATT+AGG - chr2.4:28652288-28652307 None:intergenic 35.0%
TATCAATTTACCTGAGAAGC+TGG + chr2.4:28651356-28651375 MS.gene038979:intron 35.0%
TGGGGATTACTCGAAAAAAA+CGG - chr2.4:28653689-28653708 None:intergenic 35.0%
TGTGTCAAATGCATGTAACT+TGG + chr2.4:28652416-28652435 MS.gene038979:CDS 35.0%
TTACACTCATTGTGGAGTTA+TGG - chr2.4:28653257-28653276 None:intergenic 35.0%
TTCCAATCGGATAGTGATAT+CGG - chr2.4:28652578-28652597 None:intergenic 35.0%
TTTGATGTGGCTTATACGAA+AGG - chr2.4:28653283-28653302 None:intergenic 35.0%
! AATCTAAGATGTCTTACCAC+CGG - chr2.4:28652615-28652634 None:intergenic 35.0%
! ATTTTGTTCGCATTTCAGTG+TGG + chr2.4:28653176-28653195 MS.gene038979:intron 35.0%
! CATGATTGTTTGCTAGTTAG+AGG + chr2.4:28653329-28653348 MS.gene038979:intron 35.0%
! TATCCTGAGAGATTGTTTCT+AGG - chr2.4:28653606-28653625 None:intergenic 35.0%
! TCTTGTCTGGTTTCATATTG+TGG + chr2.4:28652523-28652542 MS.gene038979:CDS 35.0%
! TTCTAGCTGTTAAGTTCTTC+TGG + chr2.4:28653105-28653124 MS.gene038979:CDS 35.0%
!! AAAAAAGTGCTTGTATCGTC+CGG - chr2.4:28653763-28653782 None:intergenic 35.0%
!! ATCGTGATTTTGACATATCC+AGG - chr2.4:28650677-28650696 None:intergenic 35.0%
!! ATTTGGTGCAGATTACTTTG+TGG + chr2.4:28654025-28654044 MS.gene038979:CDS 35.0%
!! CAAAGAACAACATAATGGGT+CGG - chr2.4:28650436-28650455 None:intergenic 35.0%
!! CTATGTGCTTGATTTGTTCA+TGG - chr2.4:28653986-28654005 None:intergenic 35.0%
!! GTACTTCTGAAGTAACTTTG+GGG - chr2.4:28653707-28653726 None:intergenic 35.0%
!! GTGTACTTCTGAAGTAACTT+TGG - chr2.4:28653709-28653728 None:intergenic 35.0%
!!! CATTGTTTTTGCATCTGTGA+TGG + chr2.4:28652730-28652749 MS.gene038979:CDS 35.0%
!!! GATTTTTAGCGTGTCAATTG+CGG + chr2.4:28652078-28652097 MS.gene038979:intron 35.0%
AACCGATATCACTATCCGAT+TGG + chr2.4:28652573-28652592 MS.gene038979:CDS 40.0%
AACTCAGTGTTTGTATTGCC+CGG + chr2.4:28653741-28653760 MS.gene038979:intron 40.0%
AACTTTGCCAAGAATTCAGG+TGG - chr2.4:28653942-28653961 None:intergenic 40.0%
ACTTGCAAAGAGTGAGAGAA+CGG + chr2.4:28652386-28652405 MS.gene038979:CDS 40.0%
ATGGAAGCTATGCATGAAAC+TGG + chr2.4:28651932-28651951 MS.gene038979:CDS 40.0%
ATTACTCGAAAAAAACGGGG+CGG - chr2.4:28653684-28653703 None:intergenic 40.0%
CATACTGATGTCTTATGCTC+AGG - chr2.4:28654188-28654207 None:intergenic 40.0%
CATCAAAATGTTGTCGAAGG+GGG + chr2.4:28653296-28653315 MS.gene038979:intron 40.0%
CCACATCAAAATGTTGTCGA+AGG + chr2.4:28653293-28653312 MS.gene038979:intron 40.0%
CCATAGTTAAGGCCTGTTTA+AGG + chr2.4:28653516-28653535 MS.gene038979:intron 40.0%
CCTTAAACAGGCCTTAACTA+TGG - chr2.4:28653519-28653538 None:intergenic 40.0%
CTTACAAGAATAGCTCCTGT+TGG - chr2.4:28653140-28653159 None:intergenic 40.0%
GAAACAGAGAAAGTAGGCAA+AGG - chr2.4:28651845-28651864 None:intergenic 40.0%
GAATTGGATGATCGGGATTA+TGG + chr2.4:28652953-28652972 MS.gene038979:CDS 40.0%
GAGAATGTTTGGTCACTCAT+CGG + chr2.4:28653906-28653925 MS.gene038979:CDS 40.0%
GATCCTAGAAACAATCTCTC+AGG + chr2.4:28653600-28653619 MS.gene038979:intron 40.0%
GATGCTTGGATGATGTTGAT+TGG + chr2.4:28651519-28651538 MS.gene038979:intron 40.0%
GCAATCTGCAATACACATTC+AGG - chr2.4:28653849-28653868 None:intergenic 40.0%
GGGATTACTCGAAAAAAACG+GGG - chr2.4:28653687-28653706 None:intergenic 40.0%
GGGGATTACTCGAAAAAAAC+GGG - chr2.4:28653688-28653707 None:intergenic 40.0%
GTTCATGGTGGTTCCATATA+AGG - chr2.4:28653971-28653990 None:intergenic 40.0%
TAGCTGTTAAGTTCTTCTGG+TGG + chr2.4:28653108-28653127 MS.gene038979:CDS 40.0%
TCGATCCAGTAAAGGTGAAT+TGG + chr2.4:28652937-28652956 MS.gene038979:CDS 40.0%
TGAGCAACAACATTCTGTGA+TGG - chr2.4:28650303-28650322 None:intergenic 40.0%
TGCATGCGTTTCTTTCCAAT+CGG - chr2.4:28652591-28652610 None:intergenic 40.0%
TGCCTACTTTCTCTGTTTCA+GGG + chr2.4:28651846-28651865 MS.gene038979:intron 40.0%
TGGTTGAGAAACATGTCTTC+TGG - chr2.4:28654068-28654087 None:intergenic 40.0%
TGTTAAGTTCTTCTGGTGGA+TGG + chr2.4:28653112-28653131 MS.gene038979:CDS 40.0%
TTCCCTGAAACAGAGAAAGT+AGG - chr2.4:28651851-28651870 None:intergenic 40.0%
TTGCCTACTTTCTCTGTTTC+AGG + chr2.4:28651845-28651864 MS.gene038979:intron 40.0%
! AGACAGTGATGGAGAATGTT+TGG + chr2.4:28653895-28653914 MS.gene038979:CDS 40.0%
! ATCGGATAGTGATATCGGTT+TGG - chr2.4:28652573-28652592 None:intergenic 40.0%
! GCACCCCTATTTGATAACAT+TGG + chr2.4:28652247-28652266 MS.gene038979:intron 40.0%
! TCTCTTTTGGATCTCTTGTC+TGG + chr2.4:28652510-28652529 MS.gene038979:CDS 40.0%
! TTGCGGATTGCGGAAAATAT+CGG + chr2.4:28652095-28652114 MS.gene038979:intron 40.0%
!! AAAAAGTGCTTGTATCGTCC+GGG - chr2.4:28653762-28653781 None:intergenic 40.0%
!! AATTGAACCAAGCATCGAAC+TGG + chr2.4:28653410-28653429 MS.gene038979:intron 40.0%
!! CCTTCGACAACATTTTGATG+TGG - chr2.4:28653296-28653315 None:intergenic 40.0%
!! TGTGCTTGATTTGTTCATGG+TGG - chr2.4:28653983-28654002 None:intergenic 40.0%
!!! CATGAAACTGGTTTTTTCCC+AGG + chr2.4:28651944-28651963 MS.gene038979:CDS 40.0%
!!! GTGTAGCTTTTCGAGTATCA+CGG + chr2.4:28650722-28650741 MS.gene038979:intron 40.0%
AAACAAGAGAGACTCCTCGA+AGG + chr2.4:28651899-28651918 MS.gene038979:CDS 45.0%
AGATTCTGATCGAGTCTGGT+CGG + chr2.4:28652768-28652787 MS.gene038979:CDS 45.0%
AGGTGGGTATGTCAGAATCA+CGG - chr2.4:28650755-28650774 None:intergenic 45.0%
AGTTCAAGAGCGGTTAAAGG+CGG - chr2.4:28653460-28653479 None:intergenic 45.0%
CACATGGACAAAGACAGTGA+TGG + chr2.4:28653884-28653903 MS.gene038979:CDS 45.0%
CCTAGTTCAAGAGCGGTTAA+AGG - chr2.4:28653463-28653482 None:intergenic 45.0%
CCTTTAACCGCTCTTGAACT+AGG + chr2.4:28653460-28653479 MS.gene038979:intron 45.0%
CTCAACCAAGCACACAACAT+CGG + chr2.4:28654080-28654099 MS.gene038979:CDS 45.0%
GTTTCGTCCTAGTTCAAGAG+CGG - chr2.4:28653470-28653489 None:intergenic 45.0%
TGGAAAGAAACGCATGCAAC+CGG + chr2.4:28652593-28652612 MS.gene038979:CDS 45.0%
TGGTCGGCAAATTGTTGCAA+AGG + chr2.4:28652784-28652803 MS.gene038979:CDS 45.0%
TGTTTCAGGGAAACAACGCA+AGG + chr2.4:28651859-28651878 MS.gene038979:intron 45.0%
TTGCAGATTCTGATCGAGTC+TGG + chr2.4:28652764-28652783 MS.gene038979:CDS 45.0%
! ACCTTTACTGGATCGACTTC+TGG - chr2.4:28652933-28652952 None:intergenic 45.0%
! CTTCTCTGAGCCCATTTTCT+GGG + chr2.4:28653642-28653661 MS.gene038979:intron 45.0%
! TCTTCTCTGAGCCCATTTTC+TGG + chr2.4:28653641-28653660 MS.gene038979:intron 45.0%
!! ATATCGGTTTGGCTTGCTCA+TGG - chr2.4:28652562-28652581 None:intergenic 45.0%
!!! GAAACTGGTTTTTTCCCAGG+AGG + chr2.4:28651947-28651966 MS.gene038979:CDS 45.0%
AAAGAAACGCATGCAACCGG+TGG + chr2.4:28652596-28652615 MS.gene038979:CDS 50.0%
AACAGCAGCAGCTAATCCGA+CGG - chr2.4:28653087-28653106 None:intergenic 50.0%
AACAGCGCCACCTGAATTCT+TGG + chr2.4:28653932-28653951 MS.gene038979:CDS 50.0%
CTGGCAAGACCTTTGCATCA+TGG + chr2.4:28653429-28653448 MS.gene038979:intron 50.0%
GATCAGAATCTGCAAGCCCA+AGG - chr2.4:28652759-28652778 None:intergenic 50.0%
GCATCTGTGATGGCAACCTT+GGG + chr2.4:28652740-28652759 MS.gene038979:CDS 50.0%
GCATGAGGCTCCCAGAAAAT+GGG - chr2.4:28653655-28653674 None:intergenic 50.0%
GCCAGAAGTCGATCCAGTAA+AGG + chr2.4:28652929-28652948 MS.gene038979:CDS 50.0%
TGATGCCTGGTGCAACAGTA+AGG + chr2.4:28653353-28653372 MS.gene038979:intron 50.0%
TGCATCTGTGATGGCAACCT+TGG + chr2.4:28652739-28652758 MS.gene038979:CDS 50.0%
TGCATGAGGCTCCCAGAAAA+TGG - chr2.4:28653656-28653675 None:intergenic 50.0%
TTCAGGGAAACAACGCAAGG+TGG + chr2.4:28651862-28651881 MS.gene038979:intron 50.0%
TTTCGCCGATGTTGTGTGCT+TGG - chr2.4:28654088-28654107 None:intergenic 50.0%
! AGCGTGTCAATTGCGGATTG+CGG + chr2.4:28652085-28652104 MS.gene038979:intron 50.0%
! TTCTGGTGGATGGATCCAAC+AGG + chr2.4:28653122-28653141 MS.gene038979:CDS 50.0%
!! ACTAGCCTTACTGTTGCACC+AGG - chr2.4:28653361-28653380 None:intergenic 50.0%
!! CTTGGTGCTGTTTGCAGCTA+AGG + chr2.4:28652434-28652453 MS.gene038979:CDS 50.0%
!! GTTTGGCTTGCTCATGGCAT+TGG - chr2.4:28652556-28652575 None:intergenic 50.0%
ATCACCTCAGAGAGACCTCC+TGG - chr2.4:28651965-28651984 None:intergenic 55.0%
GCGGTCGAACCATGATGCAA+AGG - chr2.4:28653441-28653460 None:intergenic 55.0%
GCTAGTTAGAGGGTGATGCC+TGG + chr2.4:28653340-28653359 MS.gene038979:intron 55.0%
GGTCTTGCCAGTTCGATGCT+TGG - chr2.4:28653420-28653439 None:intergenic 55.0%
TCACCTCAGAGAGACCTCCT+GGG - chr2.4:28651964-28651983 None:intergenic 55.0%
TTTCCCAGGAGGTCTCTCTG+AGG + chr2.4:28651958-28651977 MS.gene038979:CDS 55.0%
ACGGGGCGGCTTAATGCATG+AGG - chr2.4:28653670-28653689 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr2.4 gene 28650210 28654208 28650210 ID=MS.gene038979
chr2.4 mRNA 28650210 28654208 28650210 ID=MS.gene038979.t1;Parent=MS.gene038979
chr2.4 exon 28650210 28650369 28650210 ID=MS.gene038979.t1.exon1;Parent=MS.gene038979.t1
chr2.4 CDS 28650210 28650369 28650210 ID=cds.MS.gene038979.t1;Parent=MS.gene038979.t1
chr2.4 exon 28651867 28651979 28651867 ID=MS.gene038979.t1.exon2;Parent=MS.gene038979.t1
chr2.4 CDS 28651867 28651979 28651867 ID=cds.MS.gene038979.t1;Parent=MS.gene038979.t1
chr2.4 exon 28652372 28652617 28652372 ID=MS.gene038979.t1.exon3;Parent=MS.gene038979.t1
chr2.4 CDS 28652372 28652617 28652372 ID=cds.MS.gene038979.t1;Parent=MS.gene038979.t1
chr2.4 exon 28652725 28652805 28652725 ID=MS.gene038979.t1.exon4;Parent=MS.gene038979.t1
chr2.4 CDS 28652725 28652805 28652725 ID=cds.MS.gene038979.t1;Parent=MS.gene038979.t1
chr2.4 exon 28652924 28653154 28652924 ID=MS.gene038979.t1.exon5;Parent=MS.gene038979.t1
chr2.4 CDS 28652924 28653154 28652924 ID=cds.MS.gene038979.t1;Parent=MS.gene038979.t1
chr2.4 exon 28653864 28654208 28653864 ID=MS.gene038979.t1.exon6;Parent=MS.gene038979.t1
chr2.4 CDS 28653864 28654208 28653864 ID=cds.MS.gene038979.t1;Parent=MS.gene038979.t1
Gene Sequence

>MS.gene038979

ATGGCTGATAGTGATAGCATACGAAGTGAACCTCTTCTTGATGAAGTTTCAAACGGTTCTTGGAGACTTAATGTTAAAGAATTTCATCTACCATCACAGAATGTTGTTGCTCATGAAAAAAAATCTAAGTTTAGTTTCAATGGTCTTCTTCGTAAGCCTAGTGAGTCATTCTTAAATTTATGTTCTAAAGTTTATGTTTTTTTGGTGTGTTGAATTGTGTGAACCGACCCATTATGTTGTTCTTTGCTTTTTTCAAGATTTTCTTTCATTGATTGATTAAAGTTTCAATTTTGTGTGATGGGTTTGTTCAGTTTTCTGTGATTATGTTGTGCATGTGTTGCTGTTGAATTCTGCAATAAGCCATTGTTAATCCTTTTTCACCTATTTTATTCCTTTTCTGTTTAAAGTTTTCTACTTTTGTGTAATGAGTATGTTTTGTTTTTCATGTGTATGTTTGATATTATCCTGGATATGTCAAAATCACGATGATTTACCGAGATTTTTACTACAAAGTGTAGCTTTTCGAGTATCACGGTGAGTCGCCGTGATTCTGACATACCCACCTTGATATTAAACATAAACTATGATTATGTTTATGTTGCGTATTGAATTCTGCAAAACTTTTAAATTCTCTGTTTTTGGTGGTGATAAGTTGAATTGTGCAAACCTTAAAAAGTAAGATCATGATAATTTTGAATTTTTGTGTTGCTTTATTGTAATAATAGTGGGGATCTTTAATTAAATGAAGAGCCTTTATGATGGATATTCATCAATTTATAGTGCTATTATTATTTGATTTGTTGCAAAAGTAGATGATTGATAAAGATCATGCTTTTTTGTTTTTATTTTCAAGTTGTTGTTACTGTTTCTGAATATACTCCATTATTTTATTTTGTTGTTGCTTTAATCCATTTGTACACAATCAAAGCTTAATCAGATATGAATCTTCCTTCACTTAATTCCTTTACACATCATTATTTTGTCATGTACCTAATTTATAATATTTTTTTAAAGGATAAAATAGTTTTTCATGATAAGTACTTAACAAAAGTTTGTGTGCCATTACCTTGTTCACATAATAAAGTTAACATTTAAAATATTTATTTTTTAATAAGTTGTTGATATGAAAATTCTGAAATTTCTGGTTATCAATTTACCTGAGAAGCTGGTAAAAAATTAGCAGTTAAAAATTTGTGTTTAAAATCAAGTTAAGATTGCTAGTTTCAAGCATCATGCATGACTTAAAGTGTATGTTTGGTTTCATGGTAGAGAGTCAGAAGTGATTTCAGACACATAAAACTGATTTAAAGATGCTTGGATGATGTTGATTGGAATTGATTTTGCCACTAGAAAATATTCCAATAGAATTTGTAGCTTTTGACAATTAAGGTGATTTTTATTATCAATTTTTTTTTCAGGTGAAGGGTTTATTACATTGTTATCAAATTATTTTTCAACTTGCTTTTAGGTGAATGTTTTTTGTATCCAAACATAAACACTTCACATTCAACTAACTTTTAACTAAAATTAATTTTACAAAATCATTTTTTGTCACCGCAAAATCAAACACATACTAGTTTATTAAGTGGTTTTTTTCTTTTTCTGAAGTTTTTGATTATGTTCTGACTTTTGCCTTTGCCTACTTTCTCTGTTTCAGGGAAACAACGCAAGGTGGCCGAGTATTACAAGAAACAAGAGAGACTCCTCGAAGGATTTAATGAAATGGAAGCTATGCATGAAACTGGTTTTTTCCCAGGAGGTCTCTCTGAGGTGATTGTCTATTAATCACTATGATTTACTTACAATTTTCTTATAAACGGAGATGCATTTAACTAGTTTTGATGACTGTAATGTCACTGCAAAACTGAGATTTTTAGCGTGTCAATTGCGGATTGCGGAAAATATCGGTTTGTGCATATTCTGCTACGCTACAGTGCTATAGCACTATTATAACCACTATTTGACCACACTTTATACTAAATCGTGTATTGCCGAATAATAACGGTTTGTTTAAATTTACTATGCTATAGTGCTATAGCACCCCTATTTGATAACATTGGTGATTTCCAATTGAACCTAATCGATTCATGGACATGTAGATGACTGATTGAATTTAGTCCATAAGAGAATTCTACTAAATAAAATTGCATTATGTTTGTCAGGATGAAATGAAGCAACTTGCAAAGAGTGAGAGAACGGCAGTCCTTGTGTCAAATGCATGTAACTTGGTGCTGTTTGCAGCTAAGGTTTTCGCGTCAATTGAGAGCAGATCATTAGCAGTCATTGCATCAACACTAGATTCTCTTTTGGATCTCTTGTCTGGTTTCATATTGTGGTTTACTTCCAATGCCATGAGCAAGCCAAACCGATATCACTATCCGATTGGAAAGAAACGCATGCAACCGGTGGTAAGACATCTTAGATTTTAATAAATTGAGTCATTTAAAATTTTAGTAAATGCAGTAGTTTCATAATACACTGAGTGTGAAATACAAATACTTATGTTTCTATGCAGGGTATCATTGTTTTTGCATCTGTGATGGCAACCTTGGGCTTGCAGATTCTGATCGAGTCTGGTCGGCAAATTGTTGCAAAGGTAATCACAGATCAACTCTTGTTGTTATTGCTTTTTCACTAGTTTAAATTTGAGTTTAATCGTTTTTGTCATGCGTAGCAGTGTTATACATTTCTCAGTATCATTCTTTTTCTTACAGGCTAAGCCAGAAGTCGATCCAGTAAAGGTGAATTGGATGATCGGGATTATGGTATTCGTAACTGTAGTGAAGTTCATTCTTATGATCTATTGTCGAAGATTTAAAAATGAAATTGTCAGAGCATATGCACAAGATCATTTTTTCGATGTCATTACAAATTCCGTCGGATTAGCTGCTGCTGTTCTAGCTGTTAAGTTCTTCTGGTGGATGGATCCAACAGGAGCTATTCTTGTAAGTTTATAACTTCATCTTATTTTGTTCGCATTTCAGTGTGGTTTTCTGATTGTGTTAACGTGTTCCACAATTAGTATTTTTCCATTAATAAATTTCCCATAACTCCACAATGAGTGTAAACTCCTTTCGTATAAGCCACATCAAAATGTTGTCGAAGGGGGTTTTGTGTCACATGATTGTTTGCTAGTTAGAGGGTGATGCCTGGTGCAACAGTAAGGCTAGTGTCTTGTGACCTAGAAGCAATGCTTTAAAAATTGAACCAAGCATCGAACTGGCAAGACCTTTGCATCATGGTTCGACCGCCTTTAACCGCTCTTGAACTAGGACGAAACATCTATCAAATCGCCAAAATAACTGACCATAGTTAAGGCCTGTTTAAGGTTTAATTAGTTCAACTGTTTTGGTTCGGTTTTTAAAACATTGTTTGAAAGTTACAGATTCAGATCCTAGAAACAATCTCTCAGGATAAACTGTGTATATCTATCTTCTCTGAGCCCATTTTCTGGGAGCCTCATGCATTAAGCCGCCCCGTTTTTTTCGAGTAATCCCCAAAGTTACTTCAGAAGTACACATTGAGAAAACAAACTCAGTGTTTGTATTGCCCGGACGATACAAGCACTTTTTTTATATGATCGTTGGTTACTTCATGCAAACTCCATGATTGATGTACTAATGATGATTATATTACCCTGAATGTGTATTGCAGATTGCACTATATACAATCAACACATGGACAAAGACAGTGATGGAGAATGTTTGGTCACTCATCGGAAGAACAGCGCCACCTGAATTCTTGGCAAAGTTAACATACCTTATATGGAACCACCATGAACAAATCAAGCACATAGATACTGTTAGAGCATACACATTTGGTGCAGATTACTTTGTGGAAGTTGACATTGTTTTGCCAGAAGACATGTTTCTCAACCAAGCACACAACATCGGCGAAACACTTCAAGAGAAGCTAGAACAACTTCCAGAAGTTGAAAGAGCTTTTGTTCACATTGATTTTGAGTTCACTCATAGACCTGAGCATAAGACATCAGTATGA
Protein sequence

>MS.gene038979.t1

MADSDSIRSEPLLDEVSNGSWRLNVKEFHLPSQNVVAHEKKSKFSFNGLLRKPRKQRKVAEYYKKQERLLEGFNEMEAMHETGFFPGGLSEDEMKQLAKSERTAVLVSNACNLVLFAAKVFASIESRSLAVIASTLDSLLDLLSGFILWFTSNAMSKPNRYHYPIGKKRMQPVGIIVFASVMATLGLQILIESGRQIVAKAKPEVDPVKVNWMIGIMVFVTVVKFILMIYCRRFKNEIVRAYAQDHFFDVITNSVGLAAAVLAVKFFWWMDPTGAILIALYTINTWTKTVMENVWSLIGRTAPPEFLAKLTYLIWNHHEQIKHIDTVRAYTFGADYFVEVDIVLPEDMFLNQAHNIGETLQEKLEQLPEVERAFVHIDFEFTHRPEHKTSV