Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049605.t1 | XP_003600559.1 | 96 | 403 | 16 | 0 | 1 | 403 | 1 | 403 | 3.20E-211 | 744.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049605.t1 | Q10PP8 | 72.5 | 404 | 100 | 3 | 1 | 402 | 1 | 395 | 1.4e-159 | 563.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049605.t1 | G7IV59 | 96.0 | 403 | 16 | 0 | 1 | 403 | 1 | 403 | 2.3e-211 | 744.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049605 | MS.gene05112 | 0.82948 | 5.03E-55 | -1.69E-46 |
| MS.gene049605 | MS.gene53865 | 0.903145 | 4.69E-79 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene049605 | MS.gene92476 | PPI |
| MS.gene049605 | MS.gene36106 | PPI |
| MS.gene049605 | MS.gene98420 | PPI |
| MS.gene049605 | MS.gene068947 | PPI |
| MS.gene049605 | MS.gene42745 | PPI |
| MS.gene049605 | MS.gene045727 | PPI |
| MS.gene049605 | MS.gene62500 | PPI |
| MS.gene049605 | MS.gene032465 | PPI |
| MS.gene049605 | MS.gene069718 | PPI |
| MS.gene049605 | MS.gene061402 | PPI |
| MS.gene049605 | MS.gene038979 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049605.t1 | MTR_3g062610 | 98.263 | 403 | 7 | 0 | 1 | 403 | 1 | 403 | 0.0 | 816 |
| MS.gene049605.t1 | MTR_5g075680 | 75.062 | 405 | 88 | 4 | 1 | 402 | 1 | 395 | 0.0 | 624 |
| MS.gene049605.t1 | MTR_3g062610 | 98.339 | 301 | 5 | 0 | 1 | 301 | 1 | 301 | 0.0 | 609 |
| MS.gene049605.t1 | MTR_5g075680 | 80.838 | 334 | 64 | 0 | 69 | 402 | 9 | 342 | 0.0 | 578 |
| MS.gene049605.t1 | MTR_5g075680 | 71.711 | 304 | 73 | 4 | 1 | 301 | 1 | 294 | 5.48e-155 | 440 |
| MS.gene049605.t1 | MTR_7g022890 | 56.845 | 336 | 136 | 3 | 68 | 394 | 8 | 343 | 9.00e-126 | 367 |
| MS.gene049605.t1 | MTR_7g022890 | 57.622 | 328 | 134 | 2 | 72 | 394 | 69 | 396 | 5.78e-125 | 367 |
| MS.gene049605.t1 | MTR_8g046550 | 55.287 | 331 | 141 | 4 | 72 | 396 | 64 | 393 | 3.38e-122 | 360 |
| MS.gene049605.t1 | MTR_2g064405 | 56.402 | 328 | 136 | 4 | 72 | 393 | 63 | 389 | 9.96e-121 | 356 |
| MS.gene049605.t1 | MTR_2g064405 | 58.667 | 300 | 121 | 3 | 96 | 393 | 14 | 312 | 2.74e-117 | 344 |
| MS.gene049605.t1 | MTR_5g075680 | 67.717 | 254 | 69 | 4 | 1 | 251 | 1 | 244 | 1.13e-116 | 340 |
| MS.gene049605.t1 | MTR_3g080090 | 51.558 | 353 | 161 | 5 | 53 | 397 | 49 | 399 | 3.70e-115 | 342 |
| MS.gene049605.t1 | MTR_3g081690 | 81.395 | 43 | 8 | 0 | 149 | 191 | 1 | 43 | 1.85e-15 | 77.8 |
| MS.gene049605.t1 | MTR_3g082050 | 81.395 | 43 | 8 | 0 | 149 | 191 | 1 | 43 | 2.56e-15 | 77.4 |
| MS.gene049605.t1 | MTR_3g082050 | 81.395 | 43 | 8 | 0 | 149 | 191 | 1 | 43 | 2.64e-15 | 77.4 |
| MS.gene049605.t1 | MTR_1g088870 | 21.725 | 313 | 213 | 6 | 106 | 389 | 74 | 383 | 2.03e-14 | 75.1 |
| MS.gene049605.t1 | MTR_1g088870 | 21.725 | 313 | 213 | 6 | 106 | 389 | 74 | 383 | 3.17e-14 | 74.7 |
| MS.gene049605.t1 | MTR_1g088870 | 21.630 | 319 | 211 | 7 | 106 | 388 | 74 | 389 | 8.51e-14 | 72.8 |
| MS.gene049605.t1 | MTR_1g088870 | 21.429 | 308 | 210 | 6 | 106 | 384 | 74 | 378 | 4.67e-13 | 70.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049605.t1 | AT3G58060 | 71.040 | 404 | 107 | 4 | 9 | 402 | 7 | 410 | 0.0 | 572 |
| MS.gene049605.t1 | AT3G58060 | 71.040 | 404 | 107 | 4 | 9 | 402 | 7 | 410 | 0.0 | 572 |
| MS.gene049605.t1 | AT1G79520 | 57.927 | 328 | 131 | 4 | 72 | 393 | 19 | 345 | 6.51e-123 | 360 |
| MS.gene049605.t1 | AT1G79520 | 57.927 | 328 | 131 | 4 | 72 | 393 | 19 | 345 | 6.51e-123 | 360 |
| MS.gene049605.t1 | AT1G79520 | 57.927 | 328 | 131 | 4 | 72 | 393 | 72 | 398 | 3.02e-122 | 360 |
| MS.gene049605.t1 | AT1G79520 | 57.927 | 328 | 131 | 4 | 72 | 393 | 84 | 410 | 3.75e-122 | 360 |
| MS.gene049605.t1 | AT1G16310 | 57.317 | 328 | 133 | 4 | 72 | 393 | 99 | 425 | 3.55e-120 | 355 |
| MS.gene049605.t1 | AT1G16310 | 59.732 | 298 | 117 | 3 | 98 | 393 | 16 | 312 | 7.64e-117 | 343 |
| MS.gene049605.t1 | AT2G39450 | 53.221 | 357 | 151 | 4 | 43 | 394 | 45 | 390 | 8.77e-107 | 320 |
| MS.gene049605.t1 | AT2G47830 | 21.752 | 331 | 225 | 10 | 100 | 401 | 61 | 386 | 5.47e-13 | 70.9 |
Find 88 sgRNAs with CRISPR-Local
Find 173 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGATTCTCTGCTTGATCTAA+TGG | 0.267065 | 3.2:-58848337 | MS.gene049605:CDS |
| GACAAACATGGACGGGAATT+CGG | 0.295168 | 3.2:-58849500 | None:intergenic |
| CAATTTACACCATCACAAAT+TGG | 0.338308 | 3.2:-58847190 | MS.gene049605:CDS |
| AGGCAAGAACGGACTTTATC+AGG | 0.338863 | 3.2:+58849367 | None:intergenic |
| AGCTGACATATCTCGTTATA+AGG | 0.345237 | 3.2:-58846844 | MS.gene049605:CDS |
| TGACATCTGAACAACTAATA+TGG | 0.350001 | 3.2:-58847495 | MS.gene049605:CDS |
| GGATTAGTTGCGGCTATTCT+TGG | 0.352670 | 3.2:-58847260 | MS.gene049605:CDS |
| ACAAACATGGACGGGAATTC+GGG | 0.367813 | 3.2:-58849499 | None:intergenic |
| ACAAATCATTCGCCGGAATT+CGG | 0.374346 | 3.2:-58849425 | MS.gene049605:CDS |
| GTGTCAACACGTTGAATTCC+GGG | 0.384340 | 3.2:+58846818 | None:intergenic |
| GTCAGCTTCTGCAAAACTTC+AGG | 0.391576 | 3.2:+58846860 | None:intergenic |
| ACCTTCCTTTACAGTTTCAT+TGG | 0.399639 | 3.2:-58846900 | MS.gene049605:intron |
| ACAAATGCCCTCTCAACTTC+CGG | 0.409520 | 3.2:+58846170 | None:intergenic |
| ACTGAAATCGTTTGAGGAAG+TGG | 0.414318 | 3.2:-58849045 | MS.gene049605:CDS |
| TAAAAGAAGCACATGCCATT+GGG | 0.420081 | 3.2:-58846223 | MS.gene049605:CDS |
| TGCTACACTGAAATCGTTTG+AGG | 0.426036 | 3.2:-58849051 | MS.gene049605:CDS |
| AGTGTCAACACGTTGAATTC+CGG | 0.426219 | 3.2:+58846817 | None:intergenic |
| TGAGAGAGTTAACCGAATTC+CGG | 0.436260 | 3.2:+58849413 | None:intergenic |
| AATAAAGCTTGAGAAACTTC+CGG | 0.440596 | 3.2:-58846189 | MS.gene049605:CDS |
| AAAACGTGCTTACGTATTGT+TGG | 0.457947 | 3.2:+58846091 | None:intergenic |
| AAACGTGCTTACGTATTGTT+GGG | 0.479253 | 3.2:+58846092 | None:intergenic |
| CATGGACGGGAATTCGGGTT+CGG | 0.485567 | 3.2:-58849494 | MS.gene049605:CDS |
| TGTGCTCCGACCGTCGTGTA+TGG | 0.486612 | 3.2:+58849447 | None:intergenic |
| AGAAACTTCCGGAAGTTGAG+AGG | 0.491863 | 3.2:-58846178 | MS.gene049605:CDS |
| CTGCACCCTCAGCTTTCCGA+TGG | 0.492289 | 3.2:+58848254 | None:intergenic |
| TCCTTTACAGTTTCATTGGT+GGG | 0.493930 | 3.2:-58846896 | MS.gene049605:intron |
| GATGTGGTAACAAATGTAGT+TGG | 0.494730 | 3.2:-58847281 | MS.gene049605:CDS |
| TTGGAGAGATCAACATCAAA+AGG | 0.496185 | 3.2:+58849331 | None:intergenic |
| TTCCTTTACAGTTTCATTGG+TGG | 0.497731 | 3.2:-58846897 | MS.gene049605:intron |
| ACTGTCCGTGCATATACATT+TGG | 0.506933 | 3.2:-58846797 | MS.gene049605:CDS |
| TTACTGAGAACTGAGTGCTC+TGG | 0.508821 | 3.2:+58846119 | None:intergenic |
| CTTAGTTGACAAACATGGAC+GGG | 0.514860 | 3.2:-58849507 | None:intergenic |
| GCCGCTGTCATGGCCACACT+TGG | 0.516267 | 3.2:-58848210 | MS.gene049605:intron |
| TTGGCTTAAAGCAGTGGCGT+TGG | 0.523129 | 3.2:+58849312 | None:intergenic |
| AAATTGGTCTCGCACTGTCA+TGG | 0.523148 | 3.2:-58847174 | MS.gene049605:CDS |
| TTAAAAGAAGCACATGCCAT+TGG | 0.531006 | 3.2:-58846224 | MS.gene049605:CDS |
| AGTTGATGCTGCAATAGCTA+TGG | 0.531279 | 3.2:+58848362 | None:intergenic |
| CTGTGGTGAAGCTTATACTC+TGG | 0.534229 | 3.2:-58847447 | MS.gene049605:CDS |
| ATTCGGGTTCGGATCCTACC+AGG | 0.539177 | 3.2:-58849483 | MS.gene049605:CDS |
| TGAGGATGATAAAGAAGAGC+AGG | 0.542893 | 3.2:-58848994 | MS.gene049605:CDS |
| TGTAGACATATGCGACGGTA+AGG | 0.543306 | 3.2:-58848392 | MS.gene049605:intron |
| CAAAAGGAGACTCAGAATCA+AGG | 0.545229 | 3.2:+58849347 | None:intergenic |
| AAGCTGAGGGTGCAGCCAGT+AGG | 0.553499 | 3.2:-58848246 | MS.gene049605:CDS |
| TAATGGCTGGTGGTATACTC+TGG | 0.559053 | 3.2:-58848320 | MS.gene049605:CDS |
| TCTCTGCTTGATCTAATGGC+TGG | 0.562790 | 3.2:-58848333 | MS.gene049605:CDS |
| TATGGCGGAGAGAAGCGGCC+TGG | 0.567284 | 3.2:+58849465 | None:intergenic |
| CGCACTGTCATGGAAAATGC+CGG | 0.570182 | 3.2:-58847164 | MS.gene049605:intron |
| GCGGAGAGAAGCGGCCTGGT+AGG | 0.572201 | 3.2:+58849469 | None:intergenic |
| TGCACCCTCAGCTTTCCGAT+GGG | 0.578891 | 3.2:+58848255 | None:intergenic |
| AAATGTAGTTGGATTAGTTG+CGG | 0.581893 | 3.2:-58847270 | MS.gene049605:CDS |
| GCAAGCAAAATAGCTCCTAT+CGG | 0.587887 | 3.2:+58847212 | None:intergenic |
| AACGCCACTGCTTTAAGCCA+AGG | 0.589496 | 3.2:-58849310 | MS.gene049605:intron |
| AGCTTCTGCAAAACTTCAGG+AGG | 0.593060 | 3.2:+58846863 | None:intergenic |
| CAAATTTGACTCACCAAGTG+TGG | 0.593321 | 3.2:+58848197 | None:intergenic |
| CTGCTTGATCTAATGGCTGG+TGG | 0.593383 | 3.2:-58848330 | MS.gene049605:CDS |
| TCGTGTATGGCGGAGAGAAG+CGG | 0.595818 | 3.2:+58849460 | None:intergenic |
| GAAACTTCCGGAAGTTGAGA+GGG | 0.597194 | 3.2:-58846177 | MS.gene049605:CDS |
| AAACACCAAATGTATATGCA+CGG | 0.607538 | 3.2:+58846792 | None:intergenic |
| CACTTACATCTGCATAGGCA+CGG | 0.608948 | 3.2:+58847392 | None:intergenic |
| TATTTGTAAAGTCTCCCCAA+TGG | 0.612851 | 3.2:+58846208 | None:intergenic |
| GCTCCGACCGTCGTGTATGG+CGG | 0.618205 | 3.2:+58849450 | None:intergenic |
| CCTTAGTTGACAAACATGGA+CGG | 0.618437 | 3.2:-58849508 | None:intergenic |
| GGAGCACACAAATCATTCGC+CGG | 0.624667 | 3.2:-58849432 | MS.gene049605:CDS |
| CATTTGTTACCACATCAAAG+TGG | 0.624735 | 3.2:+58847288 | None:intergenic |
| AGGGACACTTACATCTGCAT+AGG | 0.625017 | 3.2:+58847387 | None:intergenic |
| ACATATGCGACGGTAAGGAG+TGG | 0.627570 | 3.2:-58848387 | MS.gene049605:CDS |
| ACTCAGAATCAAGGCAAGAA+CGG | 0.628154 | 3.2:+58849356 | None:intergenic |
| ACGGACTTTATCAGGAAGTG+TGG | 0.628556 | 3.2:+58849375 | None:intergenic |
| AATATCTATCAGTATCCCAT+CGG | 0.631874 | 3.2:-58848270 | MS.gene049605:CDS |
| TGAGGAAGTGGATGCTGTGG+TGG | 0.631977 | 3.2:-58849033 | MS.gene049605:CDS |
| TACTGGTGGATTGATCCGAT+AGG | 0.635998 | 3.2:-58847227 | MS.gene049605:CDS |
| ACCAAGTGTGGCCATGACAG+CGG | 0.639848 | 3.2:+58848209 | None:intergenic |
| CATACCTTGGCTTAAAGCAG+TGG | 0.640046 | 3.2:+58849306 | None:intergenic |
| TATCATGATATTTGCAACTG+TGG | 0.649353 | 3.2:-58847464 | MS.gene049605:CDS |
| TCTCCGCCATACACGACGGT+CGG | 0.650705 | 3.2:-58849453 | MS.gene049605:CDS |
| AGTATCCCATCGGAAAGCTG+AGG | 0.651250 | 3.2:-58848260 | MS.gene049605:CDS |
| AAAAGAAGCACATGCCATTG+GGG | 0.652246 | 3.2:-58846222 | MS.gene049605:CDS |
| GTATCCCATCGGAAAGCTGA+GGG | 0.659180 | 3.2:-58848259 | MS.gene049605:CDS |
| GCAGGATCACCACTTTGATG+TGG | 0.659988 | 3.2:-58847297 | MS.gene049605:intron |
| CTTTATCAGGAAGTGTGGAG+AGG | 0.665062 | 3.2:+58849380 | None:intergenic |
| CTTCTCTCCGCCATACACGA+CGG | 0.675085 | 3.2:-58849457 | MS.gene049605:CDS |
| GGTAGACATTGAACTGCCAG+AGG | 0.681640 | 3.2:-58846255 | MS.gene049605:CDS |
| GGAATCTGACTGCATTGATG+AGG | 0.683331 | 3.2:-58849012 | MS.gene049605:CDS |
| TGTCAACACGTTGAATTCCG+GGG | 0.703454 | 3.2:+58846819 | None:intergenic |
| TATCTCGTTATAAGGCACCC+CGG | 0.706272 | 3.2:-58846836 | MS.gene049605:CDS |
| GTTTGAGGAAGTGGATGCTG+TGG | 0.706705 | 3.2:-58849036 | MS.gene049605:CDS |
| AGTGCGAGACCAATTTGTGA+TGG | 0.710232 | 3.2:+58847181 | None:intergenic |
| TGATGTGTAGACATATGCGA+CGG | 0.793459 | 3.2:-58848397 | MS.gene049605:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAAAAATAATTCACAAA+AGG | + | chr3.2:58847121-58847140 | None:intergenic | 10.0% |
| !! | AAATTCATTTACAATAAAAA+TGG | + | chr3.2:58847542-58847561 | None:intergenic | 10.0% |
| !!! | AGTTAAATTTTATAAAAATC+AGG | + | chr3.2:58848936-58848955 | None:intergenic | 10.0% |
| !!! | GATTTTTATAAAATTTAACT+TGG | - | chr3.2:58848936-58848955 | MS.gene049605:CDS | 10.0% |
| !! | ATTGTAAATGAATTTCAATT+TGG | - | chr3.2:58847547-58847566 | MS.gene049605:CDS | 15.0% |
| !! | TCATATTATTATATATGCTT+CGG | - | chr3.2:58847089-58847108 | MS.gene049605:intron | 15.0% |
| !!! | AAAGTTTATTGATTTTTGTT+TGG | - | chr3.2:58846856-58846875 | MS.gene049605:CDS | 15.0% |
| !!! | AAATTAATTTGATGTAATTG+TGG | - | chr3.2:58846997-58847016 | MS.gene049605:intron | 15.0% |
| !!! | ATTTTTAAACTAGAACTTTT+TGG | - | chr3.2:58847034-58847053 | MS.gene049605:intron | 15.0% |
| !!! | ATTTTTTGTTACTGTTATAA+AGG | - | chr3.2:58849001-58849020 | MS.gene049605:CDS | 15.0% |
| !!! | GTTGAATAATTATTTTATGA+AGG | - | chr3.2:58846461-58846480 | MS.gene049605:intron | 15.0% |
| !!! | TTTATTTGTTTTTGTTGAAA+AGG | - | chr3.2:58847134-58847153 | MS.gene049605:intron | 15.0% |
| !!! | TTTTAAAAATTTGTTCACAA+CGG | + | chr3.2:58847716-58847735 | None:intergenic | 15.0% |
| !! | AAGTATTCATTCAGATATTT+GGG | - | chr3.2:58847902-58847921 | MS.gene049605:intron | 20.0% |
| !! | ATTTCACAGAATCAATTTAT+AGG | - | chr3.2:58848847-58848866 | MS.gene049605:intron | 20.0% |
| !! | CTTCATTTATCCAAAAAAAA+TGG | - | chr3.2:58848895-58848914 | MS.gene049605:intron | 20.0% |
| !! | GTATGTTCAAAATGTAATAT+TGG | + | chr3.2:58849094-58849113 | None:intergenic | 20.0% |
| !! | TATCTTTGTGATATTATGTT+TGG | + | chr3.2:58849277-58849296 | None:intergenic | 20.0% |
| !! | TTACAATATGCATATATTCT+TGG | - | chr3.2:58848485-58848504 | MS.gene049605:intron | 20.0% |
| !!! | ATTTGGTGTTTTATATTTTG+TGG | - | chr3.2:58848813-58848832 | MS.gene049605:intron | 20.0% |
| !!! | GAAATTTTGTTTAGAATTAC+CGG | + | chr3.2:58848451-58848470 | None:intergenic | 20.0% |
| !!! | GTTTTCTATTAATTGCTTTA+CGG | + | chr3.2:58848062-58848081 | None:intergenic | 20.0% |
| !!! | TAGGATAATTTTCTTTTACT+AGG | - | chr3.2:58849192-58849211 | MS.gene049605:intron | 20.0% |
| !!! | TATCTTGTTATGACAAAAAT+AGG | - | chr3.2:58849173-58849192 | MS.gene049605:intron | 20.0% |
| !!! | TATTGTTTTGTTGATATTGA+AGG | - | chr3.2:58846662-58846681 | MS.gene049605:intron | 20.0% |
| !!! | TATTTTATGAAGGTGTTATA+AGG | - | chr3.2:58846471-58846490 | MS.gene049605:intron | 20.0% |
| !!! | TGTATTAAATTTCAAGTTTG+CGG | - | chr3.2:58846717-58846736 | MS.gene049605:intron | 20.0% |
| !!! | TGTTGTATAACCATTTTTTT+TGG | + | chr3.2:58848908-58848927 | None:intergenic | 20.0% |
| !!! | TTAATACCTTTTGACAATAT+TGG | - | chr3.2:58847964-58847983 | MS.gene049605:intron | 20.0% |
| !!! | TTAGTGTTAATTTTTGACAT+AGG | - | chr3.2:58846925-58846944 | MS.gene049605:intron | 20.0% |
| !!! | TTTTCAGTTTAACTAAAGTT+TGG | - | chr3.2:58846969-58846988 | MS.gene049605:intron | 20.0% |
| ! | AAATGAACAATATACAAGCT+AGG | + | chr3.2:58847436-58847455 | None:intergenic | 25.0% |
| ! | AGTATTCATTCAGATATTTG+GGG | - | chr3.2:58847903-58847922 | MS.gene049605:intron | 25.0% |
| ! | ATGTAATTGTGGTTATAGAA+TGG | - | chr3.2:58847008-58847027 | MS.gene049605:intron | 25.0% |
| ! | GTTGAAAATTCTAATGTCTT+TGG | - | chr3.2:58847647-58847666 | MS.gene049605:intron | 25.0% |
| ! | TTCCTTAAACTCAGTAAATA+AGG | + | chr3.2:58847759-58847778 | None:intergenic | 25.0% |
| !! | AATTTTTGACATAGGACAAA+AGG | - | chr3.2:58846933-58846952 | MS.gene049605:intron | 25.0% |
| !! | ACATAATTAACTTTTGCTTC+CGG | - | chr3.2:58848535-58848554 | MS.gene049605:intron | 25.0% |
| !! | ATTTAAGACGTAAATGCAAT+TGG | - | chr3.2:58848602-58848621 | MS.gene049605:intron | 25.0% |
| !! | GAAGTATTCATTCAGATATT+TGG | - | chr3.2:58847901-58847920 | MS.gene049605:intron | 25.0% |
| !! | TTAAACTAGAACTTTTTGGA+TGG | - | chr3.2:58847038-58847057 | MS.gene049605:intron | 25.0% |
| !!! | ATTTGAATTTGATTTTGAGC+AGG | - | chr3.2:58849317-58849336 | MS.gene049605:CDS | 25.0% |
| !!! | GTATTGATTCGTTTACAATT+GGG | - | chr3.2:58846830-58846849 | MS.gene049605:CDS | 25.0% |
| !!! | TGTATTGATTCGTTTACAAT+TGG | - | chr3.2:58846829-58846848 | MS.gene049605:CDS | 25.0% |
| !!! | TTCTTGGTGATAAATTTTAC+TGG | - | chr3.2:58848349-58848368 | MS.gene049605:CDS | 25.0% |
| AAACACCAAATGTATATGCA+CGG | + | chr3.2:58848804-58848823 | None:intergenic | 30.0% | |
| AAGAAAACATGTCAATATGC+AGG | - | chr3.2:58848278-58848297 | MS.gene049605:CDS | 30.0% | |
| AATAAAGCTTGAGAAACTTC+CGG | - | chr3.2:58849404-58849423 | MS.gene049605:CDS | 30.0% | |
| AATATCTATCAGTATCCCAT+CGG | - | chr3.2:58847323-58847342 | MS.gene049605:intron | 30.0% | |
| ACTAGCAAATAAATGTTCCT+CGG | + | chr3.2:58847604-58847623 | None:intergenic | 30.0% | |
| CAATTTACACCATCACAAAT+TGG | - | chr3.2:58848403-58848422 | MS.gene049605:intron | 30.0% | |
| CATGTACCAATATTGTCAAA+AGG | + | chr3.2:58847973-58847992 | None:intergenic | 30.0% | |
| GGTTGAATTTATGTGTGTAT+AGG | - | chr3.2:58846492-58846511 | MS.gene049605:intron | 30.0% | |
| TAAGGAAATCATTCAGCTAT+AGG | - | chr3.2:58847772-58847791 | MS.gene049605:intron | 30.0% | |
| TACATGAACATTAGTATGTG+AGG | + | chr3.2:58849233-58849252 | None:intergenic | 30.0% | |
| TATCATGATATTTGCAACTG+TGG | - | chr3.2:58848129-58848148 | MS.gene049605:intron | 30.0% | |
| TGAATCCAAACATATGAATC+TGG | + | chr3.2:58846746-58846765 | None:intergenic | 30.0% | |
| TGACATCTGAACAACTAATA+TGG | - | chr3.2:58848098-58848117 | MS.gene049605:intron | 30.0% | |
| TTATAAAGGAATGTGCGTAA+TGG | - | chr3.2:58849015-58849034 | MS.gene049605:CDS | 30.0% | |
| ! | CATTGAATCTATTTTGCTAC+AGG | - | chr3.2:58848016-58848035 | MS.gene049605:intron | 30.0% |
| ! | GTCCTTATTTACTGAGTTTA+AGG | - | chr3.2:58847754-58847773 | MS.gene049605:intron | 30.0% |
| ! | TGGTGTTTTATATTTTGTGG+AGG | - | chr3.2:58848816-58848835 | MS.gene049605:intron | 30.0% |
| !! | AAATGTAGTTGGATTAGTTG+CGG | - | chr3.2:58848323-58848342 | MS.gene049605:CDS | 30.0% |
| !! | TTGGTGATAAATTTTACTGG+TGG | - | chr3.2:58848352-58848371 | MS.gene049605:CDS | 30.0% |
| !!! | TCTTTTTCCTTTGAGTTGAA+TGG | - | chr3.2:58847483-58847502 | MS.gene049605:CDS | 30.0% |
| AACAGCATAAGGGCTATATA+CGG | + | chr3.2:58847689-58847708 | None:intergenic | 35.0% | |
| ACCAATGAAACTGTAAAGGA+AGG | + | chr3.2:58848697-58848716 | None:intergenic | 35.0% | |
| ACCTTCCTTTACAGTTTCAT+TGG | - | chr3.2:58848693-58848712 | MS.gene049605:intron | 35.0% | |
| ACTGACATTCAAAGCTAACT+AGG | + | chr3.2:58849144-58849163 | None:intergenic | 35.0% | |
| AGATTCTCTGCTTGATCTAA+TGG | - | chr3.2:58847256-58847275 | MS.gene049605:CDS | 35.0% | |
| AGCTGACATATCTCGTTATA+AGG | - | chr3.2:58848749-58848768 | MS.gene049605:intron | 35.0% | |
| CACAATAAGAGAAACCTAAC+TGG | + | chr3.2:58849043-58849062 | None:intergenic | 35.0% | |
| GATGTAATTTCAGAAGCAGT+GGG | + | chr3.2:58847942-58847961 | None:intergenic | 35.0% | |
| GATGTGGTAACAAATGTAGT+TGG | - | chr3.2:58848312-58848331 | MS.gene049605:CDS | 35.0% | |
| GCAAAAACAATTATGCCTAC+TGG | + | chr3.2:58847365-58847384 | None:intergenic | 35.0% | |
| GTGTTATCACATGTGTAAGT+AGG | - | chr3.2:58846367-58846386 | MS.gene049605:intron | 35.0% | |
| TATAGGTTATAGCTGATGAC+AGG | - | chr3.2:58847789-58847808 | MS.gene049605:intron | 35.0% | |
| TATTTGTAAAGTCTCCCCAA+TGG | + | chr3.2:58849388-58849407 | None:intergenic | 35.0% | |
| TCATTCACCATTCAACTCAA+AGG | + | chr3.2:58847493-58847512 | None:intergenic | 35.0% | |
| TCCTTTACAGTTTCATTGGT+GGG | - | chr3.2:58848697-58848716 | MS.gene049605:intron | 35.0% | |
| TGATGTAATTTCAGAAGCAG+TGG | + | chr3.2:58847943-58847962 | None:intergenic | 35.0% | |
| TTCCTTTACAGTTTCATTGG+TGG | - | chr3.2:58848696-58848715 | MS.gene049605:intron | 35.0% | |
| TTGGAGAGATCAACATCAAA+AGG | + | chr3.2:58846265-58846284 | None:intergenic | 35.0% | |
| ! | ACTAGAACTTTTTGGATGGT+TGG | - | chr3.2:58847042-58847061 | MS.gene049605:intron | 35.0% |
| ! | ATCTGTCTTTTTGACCTTAC+CGG | + | chr3.2:58848557-58848576 | None:intergenic | 35.0% |
| ! | ATGGCATGTGCTTCTTTTAA+CGG | + | chr3.2:58849369-58849388 | None:intergenic | 35.0% |
| ! | ATTAACTTTTGCTTCCGGTA+AGG | - | chr3.2:58848540-58848559 | MS.gene049605:intron | 35.0% |
| ! | CATTTGTTACCACATCAAAG+TGG | + | chr3.2:58848308-58848327 | None:intergenic | 35.0% |
| ! | CTATTTTGCTACAGGTTTTC+AGG | - | chr3.2:58848024-58848043 | MS.gene049605:intron | 35.0% |
| ! | GAAACTGTAAAGGAAGGTAT+CGG | + | chr3.2:58848691-58848710 | None:intergenic | 35.0% |
| ! | TAAAAGAAGCACATGCCATT+GGG | - | chr3.2:58849370-58849389 | MS.gene049605:CDS | 35.0% |
| ! | TCAGATGTCATCTTTTCACT+AGG | + | chr3.2:58848088-58848107 | None:intergenic | 35.0% |
| ! | TCTTTTAACGGTAATTCCTC+TGG | + | chr3.2:58849357-58849376 | None:intergenic | 35.0% |
| ! | TTAAAAGAAGCACATGCCAT+TGG | - | chr3.2:58849369-58849388 | MS.gene049605:CDS | 35.0% |
| !!! | AGGTTTTCAGGTGTTATTCA+CGG | - | chr3.2:58848036-58848055 | MS.gene049605:intron | 35.0% |
| ACAAATCATTCGCCGGAATT+CGG | - | chr3.2:58846168-58846187 | MS.gene049605:CDS | 40.0% | |
| ACAACGGAATGAACAGCATA+AGG | + | chr3.2:58847700-58847719 | None:intergenic | 40.0% | |
| ACTCAGAATCAAGGCAAGAA+CGG | + | chr3.2:58846240-58846259 | None:intergenic | 40.0% | |
| ACTGAAATCGTTTGAGGAAG+TGG | - | chr3.2:58846548-58846567 | MS.gene049605:intron | 40.0% | |
| ACTGTCCGTGCATATACATT+TGG | - | chr3.2:58848796-58848815 | MS.gene049605:intron | 40.0% | |
| AGTGTCAACACGTTGAATTC+CGG | + | chr3.2:58848779-58848798 | None:intergenic | 40.0% | |
| CAAAAGGAGACTCAGAATCA+AGG | + | chr3.2:58846249-58846268 | None:intergenic | 40.0% | |
| CAAATTTGACTCACCAAGTG+TGG | + | chr3.2:58847399-58847418 | None:intergenic | 40.0% | |
| CAACGGAATGAACAGCATAA+GGG | + | chr3.2:58847699-58847718 | None:intergenic | 40.0% | |
| CTCTTGTCTAAGTATCTGAC+TGG | - | chr3.2:58847625-58847644 | MS.gene049605:intron | 40.0% | |
| GCAAGCAAAATAGCTCCTAT+CGG | + | chr3.2:58848384-58848403 | None:intergenic | 40.0% | |
| GGCACTATAGCATAAGCATA+TGG | + | chr3.2:58847583-58847602 | None:intergenic | 40.0% | |
| TCCCACCAATGAAACTGTAA+AGG | + | chr3.2:58848701-58848720 | None:intergenic | 40.0% | |
| TGAGAGAGTTAACCGAATTC+CGG | + | chr3.2:58846183-58846202 | None:intergenic | 40.0% | |
| TGAGGATGATAAAGAAGAGC+AGG | - | chr3.2:58846599-58846618 | MS.gene049605:intron | 40.0% | |
| TGATGTGTAGACATATGCGA+CGG | - | chr3.2:58847196-58847215 | MS.gene049605:CDS | 40.0% | |
| TGCTACACTGAAATCGTTTG+AGG | - | chr3.2:58846542-58846561 | MS.gene049605:intron | 40.0% | |
| ! | AAAAGAAGCACATGCCATTG+GGG | - | chr3.2:58849371-58849390 | MS.gene049605:CDS | 40.0% |
| ! | AGTTGATGCTGCAATAGCTA+TGG | + | chr3.2:58847234-58847253 | None:intergenic | 40.0% |
| !!! | AATTGTTTTTGCCGCTGTCA+TGG | - | chr3.2:58847373-58847392 | MS.gene049605:intron | 40.0% |
| ACAAATGCCCTCTCAACTTC+CGG | + | chr3.2:58849426-58849445 | None:intergenic | 45.0% | |
| ACGGACTTTATCAGGAAGTG+TGG | + | chr3.2:58846221-58846240 | None:intergenic | 45.0% | |
| ACTGACACGTCTTTGATCAG+AGG | - | chr3.2:58846399-58846418 | MS.gene049605:intron | 45.0% | |
| AGAAACTTCCGGAAGTTGAG+AGG | - | chr3.2:58849415-58849434 | MS.gene049605:CDS | 45.0% | |
| AGCTTCTGCAAAACTTCAGG+AGG | + | chr3.2:58848733-58848752 | None:intergenic | 45.0% | |
| AGGGACACTTACATCTGCAT+AGG | + | chr3.2:58848209-58848228 | None:intergenic | 45.0% | |
| AGTGCGAGACCAATTTGTGA+TGG | + | chr3.2:58848415-58848434 | None:intergenic | 45.0% | |
| ATGCTTATGCTATAGTGCCG+AGG | - | chr3.2:58847584-58847603 | MS.gene049605:intron | 45.0% | |
| CACTTACATCTGCATAGGCA+CGG | + | chr3.2:58848204-58848223 | None:intergenic | 45.0% | |
| CATACCTTGGCTTAAAGCAG+TGG | + | chr3.2:58846290-58846309 | None:intergenic | 45.0% | |
| CTGTGGTGAAGCTTATACTC+TGG | - | chr3.2:58848146-58848165 | MS.gene049605:intron | 45.0% | |
| GAAACTTCCGGAAGTTGAGA+GGG | - | chr3.2:58849416-58849435 | MS.gene049605:CDS | 45.0% | |
| GAAGCAGACATCAGAAGAGA+GGG | + | chr3.2:58848228-58848247 | None:intergenic | 45.0% | |
| GGTCGCCAGATTCATATGTT+TGG | - | chr3.2:58846738-58846757 | MS.gene049605:intron | 45.0% | |
| GTCAGCTTCTGCAAAACTTC+AGG | + | chr3.2:58848736-58848755 | None:intergenic | 45.0% | |
| GTGTCAACACGTTGAATTCC+GGG | + | chr3.2:58848778-58848797 | None:intergenic | 45.0% | |
| TAATGGCTGGTGGTATACTC+TGG | - | chr3.2:58847273-58847292 | MS.gene049605:CDS | 45.0% | |
| TCTCTGCTTGATCTAATGGC+TGG | - | chr3.2:58847260-58847279 | MS.gene049605:CDS | 45.0% | |
| TGAAGCAGACATCAGAAGAG+AGG | + | chr3.2:58848229-58848248 | None:intergenic | 45.0% | |
| TGTAGACATATGCGACGGTA+AGG | - | chr3.2:58847201-58847220 | MS.gene049605:CDS | 45.0% | |
| TGTCAACACGTTGAATTCCG+GGG | + | chr3.2:58848777-58848796 | None:intergenic | 45.0% | |
| TTACTGAGAACTGAGTGCTC+TGG | + | chr3.2:58849477-58849496 | None:intergenic | 45.0% | |
| ! | AAATTGGTCTCGCACTGTCA+TGG | - | chr3.2:58848419-58848438 | MS.gene049605:intron | 45.0% |
| ! | ACGTCTTTGATCAGAGGTGT+CGG | - | chr3.2:58846405-58846424 | MS.gene049605:intron | 45.0% |
| ! | AGGCAAGAACGGACTTTATC+AGG | + | chr3.2:58846229-58846248 | None:intergenic | 45.0% |
| ! | CTTTATCAGGAAGTGTGGAG+AGG | + | chr3.2:58846216-58846235 | None:intergenic | 45.0% |
| ! | GGAATCTGACTGCATTGATG+AGG | - | chr3.2:58846581-58846600 | MS.gene049605:intron | 45.0% |
| ! | TATCTCGTTATAAGGCACCC+CGG | - | chr3.2:58848757-58848776 | MS.gene049605:intron | 45.0% |
| !! | GGATTAGTTGCGGCTATTCT+TGG | - | chr3.2:58848333-58848352 | MS.gene049605:CDS | 45.0% |
| !! | TACTGGTGGATTGATCCGAT+AGG | - | chr3.2:58848366-58848385 | MS.gene049605:CDS | 45.0% |
| !! | TGTGCGTAATGGATCCAGTT+AGG | - | chr3.2:58849026-58849045 | MS.gene049605:CDS | 45.0% |
| ACACGTATCAGTGTCGTGTC+TGG | + | chr3.2:58846322-58846341 | None:intergenic | 50.0% | |
| ACATATGCGACGGTAAGGAG+TGG | - | chr3.2:58847206-58847225 | MS.gene049605:CDS | 50.0% | |
| AGTATCCCATCGGAAAGCTG+AGG | - | chr3.2:58847333-58847352 | MS.gene049605:intron | 50.0% | |
| CGCACTGTCATGGAAAATGC+CGG | - | chr3.2:58848429-58848448 | MS.gene049605:intron | 50.0% | |
| CTGCTTGATCTAATGGCTGG+TGG | - | chr3.2:58847263-58847282 | MS.gene049605:CDS | 50.0% | |
| GCAGGATCACCACTTTGATG+TGG | - | chr3.2:58848296-58848315 | MS.gene049605:CDS | 50.0% | |
| GGAGCACACAAATCATTCGC+CGG | - | chr3.2:58846161-58846180 | MS.gene049605:CDS | 50.0% | |
| GGTAGACATTGAACTGCCAG+AGG | - | chr3.2:58849338-58849357 | MS.gene049605:CDS | 50.0% | |
| GTATCCCATCGGAAAGCTGA+GGG | - | chr3.2:58847334-58847353 | MS.gene049605:intron | 50.0% | |
| GTTTGAGGAAGTGGATGCTG+TGG | - | chr3.2:58846557-58846576 | MS.gene049605:intron | 50.0% | |
| TTGGCTTAAAGCAGTGGCGT+TGG | + | chr3.2:58846284-58846303 | None:intergenic | 50.0% | |
| ! | AACGCCACTGCTTTAAGCCA+AGG | - | chr3.2:58846283-58846302 | MS.gene049605:intron | 50.0% |
| ! | CTGGTGTCAGCATCATACCT+TGG | + | chr3.2:58846303-58846322 | None:intergenic | 50.0% |
| ACCAAGTGTGGCCATGACAG+CGG | + | chr3.2:58847387-58847406 | None:intergenic | 55.0% | |
| CTTCTCTCCGCCATACACGA+CGG | - | chr3.2:58846136-58846155 | MS.gene049605:CDS | 55.0% | |
| TGAGGAAGTGGATGCTGTGG+TGG | - | chr3.2:58846560-58846579 | MS.gene049605:intron | 55.0% | |
| TGCACCCTCAGCTTTCCGAT+GGG | + | chr3.2:58847341-58847360 | None:intergenic | 55.0% | |
| ! | ATTCGGGTTCGGATCCTACC+AGG | - | chr3.2:58846110-58846129 | MS.gene049605:CDS | 55.0% |
| ! | TCGTGTATGGCGGAGAGAAG+CGG | + | chr3.2:58846136-58846155 | None:intergenic | 55.0% |
| CTGCACCCTCAGCTTTCCGA+TGG | + | chr3.2:58847342-58847361 | None:intergenic | 60.0% | |
| TCTCCGCCATACACGACGGT+CGG | - | chr3.2:58846140-58846159 | MS.gene049605:CDS | 60.0% | |
| TGTGCTCCGACCGTCGTGTA+TGG | + | chr3.2:58846149-58846168 | None:intergenic | 60.0% | |
| ! | AAGCTGAGGGTGCAGCCAGT+AGG | - | chr3.2:58847347-58847366 | MS.gene049605:intron | 60.0% |
| GCCGCTGTCATGGCCACACT+TGG | - | chr3.2:58847383-58847402 | MS.gene049605:intron | 65.0% | |
| GCTCCGACCGTCGTGTATGG+CGG | + | chr3.2:58846146-58846165 | None:intergenic | 65.0% | |
| ! | TATGGCGGAGAGAAGCGGCC+TGG | + | chr3.2:58846131-58846150 | None:intergenic | 65.0% |
| GCGGAGAGAAGCGGCCTGGT+AGG | + | chr3.2:58846127-58846146 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 58846100 | 58849515 | 58846100 | ID=MS.gene049605 |
| chr3.2 | mRNA | 58846100 | 58849515 | 58846100 | ID=MS.gene049605.t1;Parent=MS.gene049605 |
| chr3.2 | exon | 58849311 | 58849515 | 58849311 | ID=MS.gene049605.t1.exon1;Parent=MS.gene049605.t1 |
| chr3.2 | CDS | 58849311 | 58849515 | 58849311 | ID=cds.MS.gene049605.t1;Parent=MS.gene049605.t1 |
| chr3.2 | exon | 58848932 | 58849101 | 58848932 | ID=MS.gene049605.t1.exon2;Parent=MS.gene049605.t1 |
| chr3.2 | CDS | 58848932 | 58849101 | 58848932 | ID=cds.MS.gene049605.t1;Parent=MS.gene049605.t1 |
| chr3.2 | exon | 58848211 | 58848409 | 58848211 | ID=MS.gene049605.t1.exon3;Parent=MS.gene049605.t1 |
| chr3.2 | CDS | 58848211 | 58848409 | 58848211 | ID=cds.MS.gene049605.t1;Parent=MS.gene049605.t1 |
| chr3.2 | exon | 58847399 | 58847577 | 58847399 | ID=MS.gene049605.t1.exon4;Parent=MS.gene049605.t1 |
| chr3.2 | CDS | 58847399 | 58847577 | 58847399 | ID=cds.MS.gene049605.t1;Parent=MS.gene049605.t1 |
| chr3.2 | exon | 58847165 | 58847315 | 58847165 | ID=MS.gene049605.t1.exon5;Parent=MS.gene049605.t1 |
| chr3.2 | CDS | 58847165 | 58847315 | 58847165 | ID=cds.MS.gene049605.t1;Parent=MS.gene049605.t1 |
| chr3.2 | exon | 58846778 | 58846908 | 58846778 | ID=MS.gene049605.t1.exon6;Parent=MS.gene049605.t1 |
| chr3.2 | CDS | 58846778 | 58846908 | 58846778 | ID=cds.MS.gene049605.t1;Parent=MS.gene049605.t1 |
| chr3.2 | exon | 58846100 | 58846276 | 58846100 | ID=MS.gene049605.t1.exon7;Parent=MS.gene049605.t1 |
| chr3.2 | CDS | 58846100 | 58846276 | 58846100 | ID=cds.MS.gene049605.t1;Parent=MS.gene049605.t1 |
| Gene Sequence |
| Protein sequence |
