Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53865.t1 | XP_003600559.1 | 96 | 403 | 16 | 0 | 1 | 403 | 1 | 403 | 3.20E-211 | 744.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53865.t1 | Q10PP8 | 72.5 | 404 | 100 | 3 | 1 | 402 | 1 | 395 | 1.4e-159 | 563.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53865.t1 | G7IV59 | 96.0 | 403 | 16 | 0 | 1 | 403 | 1 | 403 | 2.3e-211 | 744.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049605 | MS.gene53865 | 0.903145 | 4.69E-79 | -1.69E-46 |
| MS.gene05112 | MS.gene53865 | 0.825462 | 4.63E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene53865 | MS.gene36106 | PPI |
| MS.gene53865 | MS.gene98420 | PPI |
| MS.gene53865 | MS.gene068947 | PPI |
| MS.gene53865 | MS.gene42745 | PPI |
| MS.gene53865 | MS.gene069718 | PPI |
| MS.gene53865 | MS.gene92476 | PPI |
| MS.gene045727 | MS.gene53865 | PPI |
| MS.gene53865 | MS.gene061402 | PPI |
| MS.gene53865 | MS.gene038979 | PPI |
| MS.gene032465 | MS.gene53865 | PPI |
| MS.gene53865 | MS.gene62500 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53865.t1 | MTR_3g062610 | 98.263 | 403 | 7 | 0 | 1 | 403 | 1 | 403 | 0.0 | 816 |
| MS.gene53865.t1 | MTR_5g075680 | 75.062 | 405 | 88 | 4 | 1 | 402 | 1 | 395 | 0.0 | 624 |
| MS.gene53865.t1 | MTR_3g062610 | 98.339 | 301 | 5 | 0 | 1 | 301 | 1 | 301 | 0.0 | 609 |
| MS.gene53865.t1 | MTR_5g075680 | 80.838 | 334 | 64 | 0 | 69 | 402 | 9 | 342 | 0.0 | 578 |
| MS.gene53865.t1 | MTR_5g075680 | 71.711 | 304 | 73 | 4 | 1 | 301 | 1 | 294 | 5.48e-155 | 440 |
| MS.gene53865.t1 | MTR_7g022890 | 56.845 | 336 | 136 | 3 | 68 | 394 | 8 | 343 | 9.00e-126 | 367 |
| MS.gene53865.t1 | MTR_7g022890 | 57.622 | 328 | 134 | 2 | 72 | 394 | 69 | 396 | 5.78e-125 | 367 |
| MS.gene53865.t1 | MTR_8g046550 | 55.287 | 331 | 141 | 4 | 72 | 396 | 64 | 393 | 3.38e-122 | 360 |
| MS.gene53865.t1 | MTR_2g064405 | 56.402 | 328 | 136 | 4 | 72 | 393 | 63 | 389 | 9.96e-121 | 356 |
| MS.gene53865.t1 | MTR_2g064405 | 58.667 | 300 | 121 | 3 | 96 | 393 | 14 | 312 | 2.74e-117 | 344 |
| MS.gene53865.t1 | MTR_5g075680 | 67.717 | 254 | 69 | 4 | 1 | 251 | 1 | 244 | 1.13e-116 | 340 |
| MS.gene53865.t1 | MTR_3g080090 | 51.558 | 353 | 161 | 5 | 53 | 397 | 49 | 399 | 3.70e-115 | 342 |
| MS.gene53865.t1 | MTR_3g081690 | 81.395 | 43 | 8 | 0 | 149 | 191 | 1 | 43 | 1.85e-15 | 77.8 |
| MS.gene53865.t1 | MTR_3g082050 | 81.395 | 43 | 8 | 0 | 149 | 191 | 1 | 43 | 2.56e-15 | 77.4 |
| MS.gene53865.t1 | MTR_3g082050 | 81.395 | 43 | 8 | 0 | 149 | 191 | 1 | 43 | 2.64e-15 | 77.4 |
| MS.gene53865.t1 | MTR_1g088870 | 21.725 | 313 | 213 | 6 | 106 | 389 | 74 | 383 | 2.03e-14 | 75.1 |
| MS.gene53865.t1 | MTR_1g088870 | 21.725 | 313 | 213 | 6 | 106 | 389 | 74 | 383 | 3.17e-14 | 74.7 |
| MS.gene53865.t1 | MTR_1g088870 | 21.630 | 319 | 211 | 7 | 106 | 388 | 74 | 389 | 8.51e-14 | 72.8 |
| MS.gene53865.t1 | MTR_1g088870 | 21.429 | 308 | 210 | 6 | 106 | 384 | 74 | 378 | 4.67e-13 | 70.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53865.t1 | AT3G58060 | 71.040 | 404 | 107 | 4 | 9 | 402 | 7 | 410 | 0.0 | 572 |
| MS.gene53865.t1 | AT3G58060 | 71.040 | 404 | 107 | 4 | 9 | 402 | 7 | 410 | 0.0 | 572 |
| MS.gene53865.t1 | AT1G79520 | 57.927 | 328 | 131 | 4 | 72 | 393 | 19 | 345 | 6.51e-123 | 360 |
| MS.gene53865.t1 | AT1G79520 | 57.927 | 328 | 131 | 4 | 72 | 393 | 19 | 345 | 6.51e-123 | 360 |
| MS.gene53865.t1 | AT1G79520 | 57.927 | 328 | 131 | 4 | 72 | 393 | 72 | 398 | 3.02e-122 | 360 |
| MS.gene53865.t1 | AT1G79520 | 57.927 | 328 | 131 | 4 | 72 | 393 | 84 | 410 | 3.75e-122 | 360 |
| MS.gene53865.t1 | AT1G16310 | 57.317 | 328 | 133 | 4 | 72 | 393 | 99 | 425 | 3.55e-120 | 355 |
| MS.gene53865.t1 | AT1G16310 | 59.732 | 298 | 117 | 3 | 98 | 393 | 16 | 312 | 7.64e-117 | 343 |
| MS.gene53865.t1 | AT2G39450 | 53.221 | 357 | 151 | 4 | 43 | 394 | 45 | 390 | 8.77e-107 | 320 |
| MS.gene53865.t1 | AT2G47830 | 21.752 | 331 | 225 | 10 | 100 | 401 | 61 | 386 | 5.47e-13 | 70.9 |
Find 90 sgRNAs with CRISPR-Local
Find 175 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGATTCTCTGCTTGATCTAA+TGG | 0.267065 | 3.1:-52721661 | MS.gene53865:CDS |
| GACAAACATGGACGGGAATT+CGG | 0.295168 | 3.1:-52722850 | None:intergenic |
| CAATTTACACCATCACAAAT+TGG | 0.338308 | 3.1:-52720512 | MS.gene53865:CDS |
| AGGCAAGAACGGACTTTATC+AGG | 0.338863 | 3.1:+52722717 | None:intergenic |
| AGCTGACATATCTCGTTATA+AGG | 0.345237 | 3.1:-52720166 | MS.gene53865:CDS |
| TGACATCTGAACAACTAATA+TGG | 0.350001 | 3.1:-52720817 | MS.gene53865:CDS |
| GGATTAGTTGCGGCTATTCT+TGG | 0.352670 | 3.1:-52720582 | MS.gene53865:CDS |
| ACAAACATGGACGGGAATTC+GGG | 0.367813 | 3.1:-52722849 | None:intergenic |
| ACAAATCATTCGCCGGAATT+CGG | 0.374346 | 3.1:-52722775 | MS.gene53865:CDS |
| GTGTCAACACGTTGAATTCC+GGG | 0.384340 | 3.1:+52720140 | None:intergenic |
| GTCAGCTTCTGCAAAACTTC+AGG | 0.391576 | 3.1:+52720182 | None:intergenic |
| ACCTTCCTTTACAGTTTCAT+TGG | 0.399639 | 3.1:-52720222 | MS.gene53865:intron |
| ACTGAAATCGTTTGAGGAAG+TGG | 0.414318 | 3.1:-52722374 | MS.gene53865:CDS |
| ACGAATGCCCTCTCAACTTC+CGG | 0.416341 | 3.1:+52719494 | None:intergenic |
| TAAAAGAAGCACATGCCATT+GGG | 0.420081 | 3.1:-52719547 | MS.gene53865:CDS |
| TGCTACACTGAAATCGTTTG+AGG | 0.426036 | 3.1:-52722380 | MS.gene53865:CDS |
| AGTGTCAACACGTTGAATTC+CGG | 0.426219 | 3.1:+52720139 | None:intergenic |
| TGAGAGAGTTAACCGAATTC+CGG | 0.436260 | 3.1:+52722763 | None:intergenic |
| AATAAAGCTTGAGAAACTTC+CGG | 0.440596 | 3.1:-52719513 | MS.gene53865:CDS |
| AAAACGTGCTTACGTATTGT+TGG | 0.457556 | 3.1:+52719415 | None:intergenic |
| AAACGTGCTTACGTATTGTT+GGG | 0.482904 | 3.1:+52719416 | None:intergenic |
| CATGGACGGGAATTCGGGTT+CGG | 0.485567 | 3.1:-52722844 | MS.gene53865:CDS |
| TGTGCTCCGACCGTCGTGTA+TGG | 0.486612 | 3.1:+52722797 | None:intergenic |
| AGAAACTTCCGGAAGTTGAG+AGG | 0.491863 | 3.1:-52719502 | MS.gene53865:CDS |
| CTGCACCCTCAGCTTTCCGA+TGG | 0.492289 | 3.1:+52721578 | None:intergenic |
| TCCTTTACAGTTTCATTGGT+GGG | 0.493930 | 3.1:-52720218 | MS.gene53865:intron |
| GATGTGGTAACAAATGTAGT+TGG | 0.494730 | 3.1:-52720603 | MS.gene53865:CDS |
| TTCCTTTACAGTTTCATTGG+TGG | 0.497731 | 3.1:-52720219 | MS.gene53865:intron |
| ACTGTCCGTGCATATACATT+TGG | 0.506933 | 3.1:-52720119 | MS.gene53865:CDS |
| TTGGCTTAAAGCGGTGGCGT+TGG | 0.514223 | 3.1:+52722662 | None:intergenic |
| CTTAGTTGACAAACATGGAC+GGG | 0.514860 | 3.1:-52722857 | None:intergenic |
| GCCGCTGTCATGGCCACACT+TGG | 0.516267 | 3.1:-52721534 | MS.gene53865:intron |
| TTACTGAGAACTGAGTGCTC+AGG | 0.519540 | 3.1:+52719443 | None:intergenic |
| AAATTGGTCTCGCACTGTCA+TGG | 0.523148 | 3.1:-52720496 | MS.gene53865:CDS |
| AGTGGATGCTGTGGTGGAAT+CGG | 0.526916 | 3.1:-52722356 | MS.gene53865:CDS |
| TTAAAAGAAGCACATGCCAT+TGG | 0.531006 | 3.1:-52719548 | MS.gene53865:CDS |
| AGTTGATGCTGCAATAGCTA+TGG | 0.531279 | 3.1:+52721686 | None:intergenic |
| CTGTGGTGAAGCTTATACTC+TGG | 0.534229 | 3.1:-52720769 | MS.gene53865:CDS |
| CGAAAGGAGACTCAGAATCA+AGG | 0.535718 | 3.1:+52722697 | None:intergenic |
| ATTCGGGTTCGGATCCTACC+AGG | 0.539177 | 3.1:-52722833 | MS.gene53865:CDS |
| TGAGGATGATAAAGAAGAGC+AGG | 0.542893 | 3.1:-52722323 | MS.gene53865:CDS |
| TGTAGACATATGCGACGGTA+AGG | 0.543306 | 3.1:-52721716 | MS.gene53865:intron |
| AAGCTGAGGGTGCAGCCAGT+AGG | 0.553499 | 3.1:-52721570 | MS.gene53865:CDS |
| TAATGGCTGGTGGTATACTC+TGG | 0.559053 | 3.1:-52721644 | MS.gene53865:CDS |
| TCTCTGCTTGATCTAATGGC+TGG | 0.562790 | 3.1:-52721657 | MS.gene53865:CDS |
| TATGGCGGAGAGAAGCGGCC+TGG | 0.567284 | 3.1:+52722815 | None:intergenic |
| CGCACTGTCATGGAAAATGC+CGG | 0.570182 | 3.1:-52720486 | MS.gene53865:intron |
| GCGGAGAGAAGCGGCCTGGT+AGG | 0.572201 | 3.1:+52722819 | None:intergenic |
| TGCACCCTCAGCTTTCCGAT+GGG | 0.578891 | 3.1:+52721579 | None:intergenic |
| AAATGTAGTTGGATTAGTTG+CGG | 0.581893 | 3.1:-52720592 | MS.gene53865:CDS |
| AACGCCACCGCTTTAAGCCA+AGG | 0.585220 | 3.1:-52722660 | MS.gene53865:intron |
| GCAAGCAAAATAGCTCCTAT+CGG | 0.587887 | 3.1:+52720534 | None:intergenic |
| AGCTTCTGCAAAACTTCAGG+AGG | 0.593060 | 3.1:+52720185 | None:intergenic |
| CAAATTTGACTCACCAAGTG+TGG | 0.593321 | 3.1:+52721521 | None:intergenic |
| CTGCTTGATCTAATGGCTGG+TGG | 0.593383 | 3.1:-52721654 | MS.gene53865:CDS |
| TTGGAGAGATCAACATCGAA+AGG | 0.595695 | 3.1:+52722681 | None:intergenic |
| TCGTGTATGGCGGAGAGAAG+CGG | 0.595818 | 3.1:+52722810 | None:intergenic |
| GAAACTTCCGGAAGTTGAGA+GGG | 0.597194 | 3.1:-52719501 | MS.gene53865:CDS |
| AAACACCAAATGTATATGCA+CGG | 0.607538 | 3.1:+52720114 | None:intergenic |
| CACTTACATCTGCATAGGCA+CGG | 0.608948 | 3.1:+52720714 | None:intergenic |
| TATTTGTAAAGTCTCCCCAA+TGG | 0.612851 | 3.1:+52719532 | None:intergenic |
| GCTCCGACCGTCGTGTATGG+CGG | 0.618205 | 3.1:+52722800 | None:intergenic |
| CCTTAGTTGACAAACATGGA+CGG | 0.618437 | 3.1:-52722858 | None:intergenic |
| GGAGCACACAAATCATTCGC+CGG | 0.624667 | 3.1:-52722782 | MS.gene53865:CDS |
| CATTTGTTACCACATCAAAG+TGG | 0.624735 | 3.1:+52720610 | None:intergenic |
| AGGGACACTTACATCTGCAT+AGG | 0.625017 | 3.1:+52720709 | None:intergenic |
| ACATATGCGACGGTAAGGAG+TGG | 0.627570 | 3.1:-52721711 | MS.gene53865:CDS |
| ACTCAGAATCAAGGCAAGAA+CGG | 0.628154 | 3.1:+52722706 | None:intergenic |
| ACGGACTTTATCAGGAAGTG+TGG | 0.628556 | 3.1:+52722725 | None:intergenic |
| CATCATACCTTGGCTTAAAG+CGG | 0.630458 | 3.1:+52722653 | None:intergenic |
| AATATCTATCAGTATCCCAT+CGG | 0.631874 | 3.1:-52721594 | MS.gene53865:CDS |
| TGAGGAAGTGGATGCTGTGG+TGG | 0.631977 | 3.1:-52722362 | MS.gene53865:CDS |
| TACTGGTGGATTGATCCGAT+AGG | 0.635998 | 3.1:-52720549 | MS.gene53865:CDS |
| CATACCTTGGCTTAAAGCGG+TGG | 0.636672 | 3.1:+52722656 | None:intergenic |
| ACCAAGTGTGGCCATGACAG+CGG | 0.639848 | 3.1:+52721533 | None:intergenic |
| TATCATGATATTTGCAACTG+TGG | 0.649353 | 3.1:-52720786 | MS.gene53865:CDS |
| TCTCCGCCATACACGACGGT+CGG | 0.650705 | 3.1:-52722803 | MS.gene53865:CDS |
| AGTATCCCATCGGAAAGCTG+AGG | 0.651250 | 3.1:-52721584 | MS.gene53865:CDS |
| AAAAGAAGCACATGCCATTG+GGG | 0.652246 | 3.1:-52719546 | MS.gene53865:CDS |
| GTATCCCATCGGAAAGCTGA+GGG | 0.659180 | 3.1:-52721583 | MS.gene53865:CDS |
| GCAGGATCACCACTTTGATG+TGG | 0.659988 | 3.1:-52720619 | MS.gene53865:intron |
| CTTTATCAGGAAGTGTGGAG+AGG | 0.665062 | 3.1:+52722730 | None:intergenic |
| CTTCTCTCCGCCATACACGA+CGG | 0.675085 | 3.1:-52722807 | MS.gene53865:CDS |
| GGTAGACATTGAACTGCCAG+AGG | 0.681640 | 3.1:-52719579 | MS.gene53865:CDS |
| GGAATCGGACTGCATTGATG+AGG | 0.700806 | 3.1:-52722341 | MS.gene53865:CDS |
| TGTCAACACGTTGAATTCCG+GGG | 0.703454 | 3.1:+52720141 | None:intergenic |
| TATCTCGTTATAAGGCACCC+CGG | 0.706272 | 3.1:-52720158 | MS.gene53865:CDS |
| GTTTGAGGAAGTGGATGCTG+TGG | 0.706705 | 3.1:-52722365 | MS.gene53865:CDS |
| AGTGCGAGACCAATTTGTGA+TGG | 0.710232 | 3.1:+52720503 | None:intergenic |
| TGATGTGTAGACATATGCGA+CGG | 0.793459 | 3.1:-52721721 | MS.gene53865:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAAAAATAATTCACAAA+AGG | + | chr3.1:52720471-52720490 | None:intergenic | 10.0% |
| !! | AAATTCATTTACAATAAAAA+TGG | + | chr3.1:52720894-52720913 | None:intergenic | 10.0% |
| !!! | AGTTAAATTTTATAAAAATC+AGG | + | chr3.1:52722288-52722307 | None:intergenic | 10.0% |
| !!! | GATTTTTATAAAATTTAACT+TGG | - | chr3.1:52722288-52722307 | MS.gene53865:CDS | 10.0% |
| !! | ATTGTAAATGAATTTCAATT+TGG | - | chr3.1:52720899-52720918 | MS.gene53865:intron | 15.0% |
| !! | TCATATTATTATATATGCTT+CGG | - | chr3.1:52720439-52720458 | MS.gene53865:intron | 15.0% |
| !!! | AAAGTTTATTGATTTTTGTT+TGG | - | chr3.1:52720206-52720225 | MS.gene53865:CDS | 15.0% |
| !!! | AAATTAATTTGATGTAATTG+TGG | - | chr3.1:52720347-52720366 | MS.gene53865:intron | 15.0% |
| !!! | ATTTTTAAACTAGAACTTTT+TGG | - | chr3.1:52720384-52720403 | MS.gene53865:intron | 15.0% |
| !!! | ATTTTTTGTTACTGTTATAA+AGG | - | chr3.1:52722353-52722372 | MS.gene53865:CDS | 15.0% |
| !!! | GTTGAATAATTATTTTATGA+AGG | - | chr3.1:52719808-52719827 | MS.gene53865:intron | 15.0% |
| !!! | TATTGTTTTATTGATATTGA+AGG | - | chr3.1:52720007-52720026 | MS.gene53865:intron | 15.0% |
| !!! | TTTATTTGTTTTTGTTGAAA+AGG | - | chr3.1:52720484-52720503 | MS.gene53865:intron | 15.0% |
| !! | AAGTATTCATTCAGATATTT+GGG | - | chr3.1:52721254-52721273 | MS.gene53865:intron | 20.0% |
| !! | ATTTCACAGAATCAATTTAT+AGG | - | chr3.1:52722199-52722218 | MS.gene53865:intron | 20.0% |
| !! | CTTCATTTATCCAAAAAAAA+TGG | - | chr3.1:52722247-52722266 | MS.gene53865:intron | 20.0% |
| !! | GTATGTTCAAAATGTAATAT+TGG | + | chr3.1:52722446-52722465 | None:intergenic | 20.0% |
| !! | TATCTTTGTGATATTATGTT+TGG | + | chr3.1:52722627-52722646 | None:intergenic | 20.0% |
| !! | TTACAATATGCATATATTCT+TGG | - | chr3.1:52721837-52721856 | MS.gene53865:intron | 20.0% |
| !!! | ATTTAAAACGTAAATGCAAT+TGG | - | chr3.1:52721954-52721973 | MS.gene53865:intron | 20.0% |
| !!! | ATTTGGTGTTTTATATTTTG+TGG | - | chr3.1:52722165-52722184 | MS.gene53865:intron | 20.0% |
| !!! | GAAATTTTGTTTAGAATTAC+CGG | + | chr3.1:52721803-52721822 | None:intergenic | 20.0% |
| !!! | GTTTTCTATTAATTGCTTTA+CGG | + | chr3.1:52721414-52721433 | None:intergenic | 20.0% |
| !!! | TAGGATAATTTTCTTTTACT+AGG | - | chr3.1:52722542-52722561 | MS.gene53865:intron | 20.0% |
| !!! | TGTATTAAATTTCAAGTTTG+CGG | - | chr3.1:52720067-52720086 | MS.gene53865:intron | 20.0% |
| !!! | TGTTGTATAACCATTTTTTT+TGG | + | chr3.1:52722260-52722279 | None:intergenic | 20.0% |
| !!! | TTAATACTTTTTGACAACAT+TGG | - | chr3.1:52721316-52721335 | MS.gene53865:intron | 20.0% |
| !!! | TTAGTGTTAATTTTTGACAT+AGG | - | chr3.1:52720275-52720294 | MS.gene53865:intron | 20.0% |
| !!! | TTTTAAAAATTTGCTCACAA+CGG | + | chr3.1:52721068-52721087 | None:intergenic | 20.0% |
| !!! | TTTTCAGTTTAACTAAAGTT+TGG | - | chr3.1:52720319-52720338 | MS.gene53865:intron | 20.0% |
| ! | AAATGAACAATATACAAGCT+AGG | + | chr3.1:52720786-52720805 | None:intergenic | 25.0% |
| ! | AGTATTCATTCAGATATTTG+GGG | - | chr3.1:52721255-52721274 | MS.gene53865:intron | 25.0% |
| ! | ATGTAATTGTGGTTATAGAA+TGG | - | chr3.1:52720358-52720377 | MS.gene53865:intron | 25.0% |
| ! | GTTGAAAATTCTAATGTCTT+TGG | - | chr3.1:52720999-52721018 | MS.gene53865:intron | 25.0% |
| ! | TTCCTTAAACTCAGTAAATA+AGG | + | chr3.1:52721111-52721130 | None:intergenic | 25.0% |
| !! | AATTTTTGACATAGGACAAA+AGG | - | chr3.1:52720283-52720302 | MS.gene53865:intron | 25.0% |
| !! | ACATAATTAACTTTTGCTTC+CGG | - | chr3.1:52721887-52721906 | MS.gene53865:intron | 25.0% |
| !! | GAAGTATTCATTCAGATATT+TGG | - | chr3.1:52721253-52721272 | MS.gene53865:intron | 25.0% |
| !! | TATCTTGTTATGACAAAGAT+AGG | - | chr3.1:52722523-52722542 | MS.gene53865:intron | 25.0% |
| !!! | ATTTGAATTTGATTTTGAGC+AGG | - | chr3.1:52722667-52722686 | MS.gene53865:CDS | 25.0% |
| !!! | GTATTGATTCGTTTACAATT+GGG | - | chr3.1:52720180-52720199 | MS.gene53865:CDS | 25.0% |
| !!! | TATTTTATGAAGGTGTTAGA+AGG | - | chr3.1:52719818-52719837 | MS.gene53865:intron | 25.0% |
| !!! | TGTATTGATTCGTTTACAAT+TGG | - | chr3.1:52720179-52720198 | MS.gene53865:CDS | 25.0% |
| !!! | TTCTTGGTGATAAATTTTAC+TGG | - | chr3.1:52721701-52721720 | MS.gene53865:CDS | 25.0% |
| AAACACCAAATGTATATGCA+CGG | + | chr3.1:52722156-52722175 | None:intergenic | 30.0% | |
| AAGAAAACATGTCAATATGC+AGG | - | chr3.1:52721630-52721649 | MS.gene53865:CDS | 30.0% | |
| AAGGTTGAATTTATGTGTGT+AGG | - | chr3.1:52719837-52719856 | MS.gene53865:intron | 30.0% | |
| AATAAAGCTTGAGAAACTTC+CGG | - | chr3.1:52722754-52722773 | MS.gene53865:CDS | 30.0% | |
| AATATCTATCAGTATCCCAT+CGG | - | chr3.1:52720673-52720692 | MS.gene53865:intron | 30.0% | |
| ACTAGCAAATAAATGTTCCT+CGG | + | chr3.1:52720956-52720975 | None:intergenic | 30.0% | |
| CAATTTACACCATCACAAAT+TGG | - | chr3.1:52721755-52721774 | MS.gene53865:intron | 30.0% | |
| TAAGGAAATCATTCAGCTAT+AGG | - | chr3.1:52721124-52721143 | MS.gene53865:intron | 30.0% | |
| TACATGAACATTAGTATGTG+AGG | + | chr3.1:52722583-52722602 | None:intergenic | 30.0% | |
| TATCATGATATTTGCAACTG+TGG | - | chr3.1:52721481-52721500 | MS.gene53865:intron | 30.0% | |
| TGAATCCAAACATATGAATC+TGG | + | chr3.1:52720096-52720115 | None:intergenic | 30.0% | |
| TGACATCTGAACAACTAATA+TGG | - | chr3.1:52721450-52721469 | MS.gene53865:intron | 30.0% | |
| TTATAAAGGAATGTGCGTAA+TGG | - | chr3.1:52722367-52722386 | MS.gene53865:CDS | 30.0% | |
| ! | CATTGAATCTATTTTGCTAC+AGG | - | chr3.1:52721368-52721387 | MS.gene53865:intron | 30.0% |
| ! | GTCCTTATTTACTGAGTTTA+AGG | - | chr3.1:52721106-52721125 | MS.gene53865:intron | 30.0% |
| ! | TGGTGTTTTATATTTTGTGG+AGG | - | chr3.1:52722168-52722187 | MS.gene53865:intron | 30.0% |
| ! | TTTTTGACAACATTGGTACA+TGG | - | chr3.1:52721323-52721342 | MS.gene53865:intron | 30.0% |
| !! | AAATGTAGTTGGATTAGTTG+CGG | - | chr3.1:52721675-52721694 | MS.gene53865:CDS | 30.0% |
| !! | TTGGTGATAAATTTTACTGG+TGG | - | chr3.1:52721704-52721723 | MS.gene53865:CDS | 30.0% |
| !!! | TCTTTTTCCTTTGAGTTGAA+TGG | - | chr3.1:52720835-52720854 | MS.gene53865:CDS | 30.0% |
| AACAGCATAAGGGCTATATA+CGG | + | chr3.1:52721041-52721060 | None:intergenic | 35.0% | |
| ACCAATGAAACTGTAAAGGA+AGG | + | chr3.1:52722049-52722068 | None:intergenic | 35.0% | |
| ACCTTCCTTTACAGTTTCAT+TGG | - | chr3.1:52722045-52722064 | MS.gene53865:intron | 35.0% | |
| ACTGACATTCAAAGCTAACT+AGG | + | chr3.1:52722496-52722515 | None:intergenic | 35.0% | |
| AGATTCTCTGCTTGATCTAA+TGG | - | chr3.1:52720606-52720625 | MS.gene53865:CDS | 35.0% | |
| AGCTGACATATCTCGTTATA+AGG | - | chr3.1:52722101-52722120 | MS.gene53865:intron | 35.0% | |
| CACAATAAGAGAAACCTAAC+TGG | + | chr3.1:52722395-52722414 | None:intergenic | 35.0% | |
| CATGTAACACATGTGTAAGT+AGG | - | chr3.1:52719688-52719707 | MS.gene53865:intron | 35.0% | |
| GATGTAATTTCAGAAGCAGT+GGG | + | chr3.1:52721294-52721313 | None:intergenic | 35.0% | |
| GATGTGGTAACAAATGTAGT+TGG | - | chr3.1:52721664-52721683 | MS.gene53865:CDS | 35.0% | |
| GCAAAAACAATTATGCCTAC+TGG | + | chr3.1:52720715-52720734 | None:intergenic | 35.0% | |
| TATAGGTTATAGCTGATGAC+AGG | - | chr3.1:52721141-52721160 | MS.gene53865:intron | 35.0% | |
| TATTTGTAAAGTCTCCCCAA+TGG | + | chr3.1:52722738-52722757 | None:intergenic | 35.0% | |
| TCATTCACCATTCAACTCAA+AGG | + | chr3.1:52720845-52720864 | None:intergenic | 35.0% | |
| TCCTTTACAGTTTCATTGGT+GGG | - | chr3.1:52722049-52722068 | MS.gene53865:intron | 35.0% | |
| TGATGTAATTTCAGAAGCAG+TGG | + | chr3.1:52721295-52721314 | None:intergenic | 35.0% | |
| TTCCTTTACAGTTTCATTGG+TGG | - | chr3.1:52722048-52722067 | MS.gene53865:intron | 35.0% | |
| ! | ACTAGAACTTTTTGGATGCT+TGG | - | chr3.1:52720392-52720411 | MS.gene53865:intron | 35.0% |
| ! | ATCTGTCTTTTTGACCTTAC+CGG | + | chr3.1:52721909-52721928 | None:intergenic | 35.0% |
| ! | ATGGCATGTGCTTCTTTTAA+CGG | + | chr3.1:52722719-52722738 | None:intergenic | 35.0% |
| ! | ATTAACTTTTGCTTCCGGTA+AGG | - | chr3.1:52721892-52721911 | MS.gene53865:intron | 35.0% |
| ! | CATTTGTTACCACATCAAAG+TGG | + | chr3.1:52721660-52721679 | None:intergenic | 35.0% |
| ! | CTATTTTGCTACAGGTTTTC+AGG | - | chr3.1:52721376-52721395 | MS.gene53865:intron | 35.0% |
| ! | GAAACTGTAAAGGAAGGTAT+CGG | + | chr3.1:52722043-52722062 | None:intergenic | 35.0% |
| ! | TAAAAGAAGCACATGCCATT+GGG | - | chr3.1:52722720-52722739 | MS.gene53865:CDS | 35.0% |
| ! | TCAGATGTCATCTTTTCACT+AGG | + | chr3.1:52721440-52721459 | None:intergenic | 35.0% |
| ! | TCTTTTAACGGTAATTCCTC+TGG | + | chr3.1:52722707-52722726 | None:intergenic | 35.0% |
| ! | TTAAAAGAAGCACATGCCAT+TGG | - | chr3.1:52722719-52722738 | MS.gene53865:CDS | 35.0% |
| !!! | AGGTTTTCAGGTGTTATTCA+CGG | - | chr3.1:52721388-52721407 | MS.gene53865:intron | 35.0% |
| ACAAATCATTCGCCGGAATT+CGG | - | chr3.1:52719492-52719511 | MS.gene53865:CDS | 40.0% | |
| ACAACGGAATGAACAGCATA+AGG | + | chr3.1:52721052-52721071 | None:intergenic | 40.0% | |
| ACTCAGAATCAAGGCAAGAA+CGG | + | chr3.1:52719564-52719583 | None:intergenic | 40.0% | |
| ACTGAAATCGTTTGAGGAAG+TGG | - | chr3.1:52719893-52719912 | MS.gene53865:intron | 40.0% | |
| ACTGTCCGTGCATATACATT+TGG | - | chr3.1:52722148-52722167 | MS.gene53865:intron | 40.0% | |
| AGTGTCAACACGTTGAATTC+CGG | + | chr3.1:52722131-52722150 | None:intergenic | 40.0% | |
| CAAATTTGACTCACCAAGTG+TGG | + | chr3.1:52720749-52720768 | None:intergenic | 40.0% | |
| CAACGGAATGAACAGCATAA+GGG | + | chr3.1:52721051-52721070 | None:intergenic | 40.0% | |
| CATCATACCTTGGCTTAAAG+CGG | + | chr3.1:52719617-52719636 | None:intergenic | 40.0% | |
| CTCTTGTCTAAGTATCTGAC+TGG | - | chr3.1:52720977-52720996 | MS.gene53865:intron | 40.0% | |
| GAAGCAAACATCAGAAGAGA+GGG | + | chr3.1:52721580-52721599 | None:intergenic | 40.0% | |
| GCAAGCAAAATAGCTCCTAT+CGG | + | chr3.1:52721736-52721755 | None:intergenic | 40.0% | |
| GGCACTATAGCATAAGCATA+TGG | + | chr3.1:52720935-52720954 | None:intergenic | 40.0% | |
| TCCCACCAATGAAACTGTAA+AGG | + | chr3.1:52722053-52722072 | None:intergenic | 40.0% | |
| TGAAGCAAACATCAGAAGAG+AGG | + | chr3.1:52721581-52721600 | None:intergenic | 40.0% | |
| TGAGAGAGTTAACCGAATTC+CGG | + | chr3.1:52719507-52719526 | None:intergenic | 40.0% | |
| TGAGGATGATAAAGAAGAGC+AGG | - | chr3.1:52719944-52719963 | MS.gene53865:intron | 40.0% | |
| TGATGTGTAGACATATGCGA+CGG | - | chr3.1:52720546-52720565 | MS.gene53865:CDS | 40.0% | |
| TGCTACACTGAAATCGTTTG+AGG | - | chr3.1:52719887-52719906 | MS.gene53865:intron | 40.0% | |
| TTGGAGAGATCAACATCGAA+AGG | + | chr3.1:52719589-52719608 | None:intergenic | 40.0% | |
| ! | AAAAGAAGCACATGCCATTG+GGG | - | chr3.1:52722721-52722740 | MS.gene53865:CDS | 40.0% |
| ! | AGTTGATGCTGCAATAGCTA+TGG | + | chr3.1:52720584-52720603 | None:intergenic | 40.0% |
| !!! | AATTGTTTTTGCCGCTGTCA+TGG | - | chr3.1:52720723-52720742 | MS.gene53865:CDS | 40.0% |
| ACGGACTTTATCAGGAAGTG+TGG | + | chr3.1:52719545-52719564 | None:intergenic | 45.0% | |
| AGAAACTTCCGGAAGTTGAG+AGG | - | chr3.1:52722765-52722784 | MS.gene53865:CDS | 45.0% | |
| AGCTTCTGCAAAACTTCAGG+AGG | + | chr3.1:52722085-52722104 | None:intergenic | 45.0% | |
| AGGGACACTTACATCTGCAT+AGG | + | chr3.1:52721561-52721580 | None:intergenic | 45.0% | |
| AGTGCGAGACCAATTTGTGA+TGG | + | chr3.1:52721767-52721786 | None:intergenic | 45.0% | |
| ATGCTTATGCTATAGTGCCG+AGG | - | chr3.1:52720936-52720955 | MS.gene53865:intron | 45.0% | |
| CACTTACATCTGCATAGGCA+CGG | + | chr3.1:52721556-52721575 | None:intergenic | 45.0% | |
| CGAAAGGAGACTCAGAATCA+AGG | + | chr3.1:52719573-52719592 | None:intergenic | 45.0% | |
| CTGTGGTGAAGCTTATACTC+TGG | - | chr3.1:52721498-52721517 | MS.gene53865:intron | 45.0% | |
| GAAACTTCCGGAAGTTGAGA+GGG | - | chr3.1:52722766-52722785 | MS.gene53865:CDS | 45.0% | |
| GGTCGCCAGATTCATATGTT+TGG | - | chr3.1:52720088-52720107 | MS.gene53865:intron | 45.0% | |
| GTCAGCTTCTGCAAAACTTC+AGG | + | chr3.1:52722088-52722107 | None:intergenic | 45.0% | |
| GTGTCAACACGTTGAATTCC+GGG | + | chr3.1:52722130-52722149 | None:intergenic | 45.0% | |
| TAATGGCTGGTGGTATACTC+TGG | - | chr3.1:52720623-52720642 | MS.gene53865:intron | 45.0% | |
| TCACTGACACCTCTGATCAA+AGG | + | chr3.1:52719758-52719777 | None:intergenic | 45.0% | |
| TCTCTGCTTGATCTAATGGC+TGG | - | chr3.1:52720610-52720629 | MS.gene53865:CDS | 45.0% | |
| TCTGACACACCTTTGATCAG+AGG | - | chr3.1:52719746-52719765 | MS.gene53865:intron | 45.0% | |
| TGTAGACATATGCGACGGTA+AGG | - | chr3.1:52720551-52720570 | MS.gene53865:CDS | 45.0% | |
| TGTCAACACGTTGAATTCCG+GGG | + | chr3.1:52722129-52722148 | None:intergenic | 45.0% | |
| TTACTGAGAACTGAGTGCTC+AGG | + | chr3.1:52722827-52722846 | None:intergenic | 45.0% | |
| ! | AAATTGGTCTCGCACTGTCA+TGG | - | chr3.1:52721771-52721790 | MS.gene53865:intron | 45.0% |
| ! | AGGCAAGAACGGACTTTATC+AGG | + | chr3.1:52719553-52719572 | None:intergenic | 45.0% |
| ! | CTGATCAAAGGTGTGTCAGA+TGG | + | chr3.1:52719746-52719765 | None:intergenic | 45.0% |
| ! | CTTTATCAGGAAGTGTGGAG+AGG | + | chr3.1:52719540-52719559 | None:intergenic | 45.0% |
| ! | TATCTCGTTATAAGGCACCC+CGG | - | chr3.1:52722109-52722128 | MS.gene53865:intron | 45.0% |
| !! | GGATTAGTTGCGGCTATTCT+TGG | - | chr3.1:52721685-52721704 | MS.gene53865:CDS | 45.0% |
| !! | TACTGGTGGATTGATCCGAT+AGG | - | chr3.1:52721718-52721737 | MS.gene53865:intron | 45.0% |
| !! | TGTGCGTAATGGATCCAGTT+AGG | - | chr3.1:52722378-52722397 | MS.gene53865:CDS | 45.0% |
| ACACGTATCAGTGTCGTGTC+TGG | + | chr3.1:52719646-52719665 | None:intergenic | 50.0% | |
| ACATATGCGACGGTAAGGAG+TGG | - | chr3.1:52720556-52720575 | MS.gene53865:CDS | 50.0% | |
| ACGAATGCCCTCTCAACTTC+CGG | + | chr3.1:52722776-52722795 | None:intergenic | 50.0% | |
| AGTATCCCATCGGAAAGCTG+AGG | - | chr3.1:52720683-52720702 | MS.gene53865:intron | 50.0% | |
| CATACCTTGGCTTAAAGCGG+TGG | + | chr3.1:52719614-52719633 | None:intergenic | 50.0% | |
| CGCACTGTCATGGAAAATGC+CGG | - | chr3.1:52721781-52721800 | MS.gene53865:intron | 50.0% | |
| CTGCTTGATCTAATGGCTGG+TGG | - | chr3.1:52720613-52720632 | MS.gene53865:CDS | 50.0% | |
| GCAGGATCACCACTTTGATG+TGG | - | chr3.1:52721648-52721667 | MS.gene53865:CDS | 50.0% | |
| GGAGCACACAAATCATTCGC+CGG | - | chr3.1:52719485-52719504 | MS.gene53865:CDS | 50.0% | |
| GGTAGACATTGAACTGCCAG+AGG | - | chr3.1:52722688-52722707 | MS.gene53865:CDS | 50.0% | |
| GTATCCCATCGGAAAGCTGA+GGG | - | chr3.1:52720684-52720703 | MS.gene53865:intron | 50.0% | |
| GTTTGAGGAAGTGGATGCTG+TGG | - | chr3.1:52719902-52719921 | MS.gene53865:intron | 50.0% | |
| ! | AGTGGATGCTGTGGTGGAAT+CGG | - | chr3.1:52719911-52719930 | MS.gene53865:intron | 50.0% |
| ! | CTGGTGTCAGCATCATACCT+TGG | + | chr3.1:52719627-52719646 | None:intergenic | 50.0% |
| ! | GGAATCGGACTGCATTGATG+AGG | - | chr3.1:52719926-52719945 | MS.gene53865:intron | 50.0% |
| ACCAAGTGTGGCCATGACAG+CGG | + | chr3.1:52720737-52720756 | None:intergenic | 55.0% | |
| CTTCTCTCCGCCATACACGA+CGG | - | chr3.1:52719460-52719479 | MS.gene53865:CDS | 55.0% | |
| TGAGGAAGTGGATGCTGTGG+TGG | - | chr3.1:52719905-52719924 | MS.gene53865:intron | 55.0% | |
| TGCACCCTCAGCTTTCCGAT+GGG | + | chr3.1:52720691-52720710 | None:intergenic | 55.0% | |
| TTGGCTTAAAGCGGTGGCGT+TGG | + | chr3.1:52719608-52719627 | None:intergenic | 55.0% | |
| ! | AACGCCACCGCTTTAAGCCA+AGG | - | chr3.1:52719607-52719626 | MS.gene53865:intron | 55.0% |
| ! | ATTCGGGTTCGGATCCTACC+AGG | - | chr3.1:52719434-52719453 | MS.gene53865:CDS | 55.0% |
| ! | TCGTGTATGGCGGAGAGAAG+CGG | + | chr3.1:52719460-52719479 | None:intergenic | 55.0% |
| CTGCACCCTCAGCTTTCCGA+TGG | + | chr3.1:52720692-52720711 | None:intergenic | 60.0% | |
| TCTCCGCCATACACGACGGT+CGG | - | chr3.1:52719464-52719483 | MS.gene53865:CDS | 60.0% | |
| TGTGCTCCGACCGTCGTGTA+TGG | + | chr3.1:52719473-52719492 | None:intergenic | 60.0% | |
| ! | AAGCTGAGGGTGCAGCCAGT+AGG | - | chr3.1:52720697-52720716 | MS.gene53865:intron | 60.0% |
| GCCGCTGTCATGGCCACACT+TGG | - | chr3.1:52720733-52720752 | MS.gene53865:CDS | 65.0% | |
| GCTCCGACCGTCGTGTATGG+CGG | + | chr3.1:52719470-52719489 | None:intergenic | 65.0% | |
| ! | TATGGCGGAGAGAAGCGGCC+TGG | + | chr3.1:52719455-52719474 | None:intergenic | 65.0% |
| GCGGAGAGAAGCGGCCTGGT+AGG | + | chr3.1:52719451-52719470 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 52719424 | 52722865 | 52719424 | ID=MS.gene53865 |
| chr3.1 | mRNA | 52719424 | 52722865 | 52719424 | ID=MS.gene53865.t1;Parent=MS.gene53865 |
| chr3.1 | exon | 52722661 | 52722865 | 52722661 | ID=MS.gene53865.t1.exon1;Parent=MS.gene53865.t1 |
| chr3.1 | CDS | 52722661 | 52722865 | 52722661 | ID=cds.MS.gene53865.t1;Parent=MS.gene53865.t1 |
| chr3.1 | exon | 52722261 | 52722430 | 52722261 | ID=MS.gene53865.t1.exon2;Parent=MS.gene53865.t1 |
| chr3.1 | CDS | 52722261 | 52722430 | 52722261 | ID=cds.MS.gene53865.t1;Parent=MS.gene53865.t1 |
| chr3.1 | exon | 52721535 | 52721733 | 52721535 | ID=MS.gene53865.t1.exon3;Parent=MS.gene53865.t1 |
| chr3.1 | CDS | 52721535 | 52721733 | 52721535 | ID=cds.MS.gene53865.t1;Parent=MS.gene53865.t1 |
| chr3.1 | exon | 52720721 | 52720899 | 52720721 | ID=MS.gene53865.t1.exon4;Parent=MS.gene53865.t1 |
| chr3.1 | CDS | 52720721 | 52720899 | 52720721 | ID=cds.MS.gene53865.t1;Parent=MS.gene53865.t1 |
| chr3.1 | exon | 52720487 | 52720637 | 52720487 | ID=MS.gene53865.t1.exon5;Parent=MS.gene53865.t1 |
| chr3.1 | CDS | 52720487 | 52720637 | 52720487 | ID=cds.MS.gene53865.t1;Parent=MS.gene53865.t1 |
| chr3.1 | exon | 52720100 | 52720230 | 52720100 | ID=MS.gene53865.t1.exon6;Parent=MS.gene53865.t1 |
| chr3.1 | CDS | 52720100 | 52720230 | 52720100 | ID=cds.MS.gene53865.t1;Parent=MS.gene53865.t1 |
| chr3.1 | exon | 52719424 | 52719600 | 52719424 | ID=MS.gene53865.t1.exon7;Parent=MS.gene53865.t1 |
| chr3.1 | CDS | 52719424 | 52719600 | 52719424 | ID=cds.MS.gene53865.t1;Parent=MS.gene53865.t1 |
| Gene Sequence |
| Protein sequence |
