Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05112.t1 | XP_003600559.1 | 95.5 | 403 | 18 | 0 | 1 | 403 | 1 | 403 | 7.10E-211 | 743 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05112.t1 | Q10PP8 | 72.3 | 404 | 101 | 3 | 1 | 402 | 1 | 395 | 1.9e-159 | 563.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05112.t1 | G7IV59 | 95.5 | 403 | 18 | 0 | 1 | 403 | 1 | 403 | 5.1e-211 | 743.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049605 | MS.gene05112 | 0.82948 | 5.03E-55 | -1.69E-46 |
| MS.gene05112 | MS.gene53865 | 0.825462 | 4.63E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene05112 | MS.gene068947 | PPI |
| MS.gene05112 | MS.gene42745 | PPI |
| MS.gene05112 | MS.gene36106 | PPI |
| MS.gene05112 | MS.gene98420 | PPI |
| MS.gene62500 | MS.gene05112 | PPI |
| MS.gene05112 | MS.gene069718 | PPI |
| MS.gene045727 | MS.gene05112 | PPI |
| MS.gene05112 | MS.gene038979 | PPI |
| MS.gene032465 | MS.gene05112 | PPI |
| MS.gene061402 | MS.gene05112 | PPI |
| MS.gene05112 | MS.gene92476 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05112.t1 | MTR_3g062610 | 97.767 | 403 | 9 | 0 | 1 | 403 | 1 | 403 | 0.0 | 814 |
| MS.gene05112.t1 | MTR_5g075680 | 74.815 | 405 | 89 | 4 | 1 | 402 | 1 | 395 | 0.0 | 622 |
| MS.gene05112.t1 | MTR_3g062610 | 97.674 | 301 | 7 | 0 | 1 | 301 | 1 | 301 | 0.0 | 607 |
| MS.gene05112.t1 | MTR_5g075680 | 80.539 | 334 | 65 | 0 | 69 | 402 | 9 | 342 | 0.0 | 577 |
| MS.gene05112.t1 | MTR_5g075680 | 71.382 | 304 | 74 | 4 | 1 | 301 | 1 | 294 | 1.58e-154 | 439 |
| MS.gene05112.t1 | MTR_7g022890 | 56.845 | 336 | 136 | 3 | 68 | 394 | 8 | 343 | 1.16e-125 | 367 |
| MS.gene05112.t1 | MTR_7g022890 | 57.622 | 328 | 134 | 2 | 72 | 394 | 69 | 396 | 4.96e-125 | 367 |
| MS.gene05112.t1 | MTR_8g046550 | 54.985 | 331 | 142 | 4 | 72 | 396 | 64 | 393 | 4.03e-122 | 359 |
| MS.gene05112.t1 | MTR_2g064405 | 56.098 | 328 | 137 | 4 | 72 | 393 | 63 | 389 | 1.34e-120 | 355 |
| MS.gene05112.t1 | MTR_2g064405 | 58.333 | 300 | 122 | 3 | 96 | 393 | 14 | 312 | 4.24e-117 | 343 |
| MS.gene05112.t1 | MTR_5g075680 | 67.323 | 254 | 70 | 4 | 1 | 251 | 1 | 244 | 4.61e-116 | 338 |
| MS.gene05112.t1 | MTR_3g080090 | 51.841 | 353 | 160 | 5 | 53 | 397 | 49 | 399 | 2.47e-115 | 342 |
| MS.gene05112.t1 | MTR_3g081690 | 79.070 | 43 | 9 | 0 | 149 | 191 | 1 | 43 | 2.85e-15 | 77.0 |
| MS.gene05112.t1 | MTR_3g082050 | 79.070 | 43 | 9 | 0 | 149 | 191 | 1 | 43 | 3.84e-15 | 76.6 |
| MS.gene05112.t1 | MTR_3g082050 | 79.070 | 43 | 9 | 0 | 149 | 191 | 1 | 43 | 4.04e-15 | 76.6 |
| MS.gene05112.t1 | MTR_1g088870 | 22.045 | 313 | 212 | 6 | 106 | 389 | 74 | 383 | 1.15e-14 | 75.9 |
| MS.gene05112.t1 | MTR_1g088870 | 22.045 | 313 | 212 | 6 | 106 | 389 | 74 | 383 | 1.69e-14 | 75.5 |
| MS.gene05112.t1 | MTR_1g088870 | 21.944 | 319 | 210 | 7 | 106 | 388 | 74 | 389 | 5.16e-14 | 73.6 |
| MS.gene05112.t1 | MTR_1g088870 | 21.753 | 308 | 209 | 6 | 106 | 384 | 74 | 378 | 2.66e-13 | 71.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05112.t1 | AT3G58060 | 70.545 | 404 | 109 | 4 | 9 | 402 | 7 | 410 | 0.0 | 570 |
| MS.gene05112.t1 | AT3G58060 | 70.545 | 404 | 109 | 4 | 9 | 402 | 7 | 410 | 0.0 | 570 |
| MS.gene05112.t1 | AT1G79520 | 57.622 | 328 | 132 | 4 | 72 | 393 | 19 | 345 | 1.13e-122 | 359 |
| MS.gene05112.t1 | AT1G79520 | 57.622 | 328 | 132 | 4 | 72 | 393 | 19 | 345 | 1.13e-122 | 359 |
| MS.gene05112.t1 | AT1G79520 | 57.622 | 328 | 132 | 4 | 72 | 393 | 72 | 398 | 5.03e-122 | 359 |
| MS.gene05112.t1 | AT1G79520 | 57.622 | 328 | 132 | 4 | 72 | 393 | 84 | 410 | 7.04e-122 | 359 |
| MS.gene05112.t1 | AT1G16310 | 57.012 | 328 | 134 | 4 | 72 | 393 | 99 | 425 | 5.02e-120 | 355 |
| MS.gene05112.t1 | AT1G16310 | 59.396 | 298 | 118 | 3 | 98 | 393 | 16 | 312 | 1.13e-116 | 343 |
| MS.gene05112.t1 | AT2G39450 | 53.221 | 357 | 151 | 4 | 43 | 394 | 45 | 390 | 1.19e-106 | 320 |
| MS.gene05112.t1 | AT2G47830 | 21.450 | 331 | 226 | 10 | 100 | 401 | 61 | 386 | 1.63e-12 | 69.3 |
Find 88 sgRNAs with CRISPR-Local
Find 289 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGATTCTCTGCTTGATCTAA+TGG | 0.267065 | 3.4:-65003148 | MS.gene05112:CDS |
| GACAAACATGGACGGAAATT+CGG | 0.303519 | 3.4:-65005893 | None:intergenic |
| CAATTTACACCATCACAAAT+TGG | 0.338308 | 3.4:-65001999 | MS.gene05112:CDS |
| AGGCAAGAACGGACTTTATC+AGG | 0.338863 | 3.4:+65005760 | None:intergenic |
| AGCTGACATATCTCGTTATA+AGG | 0.345237 | 3.4:-65001653 | MS.gene05112:CDS |
| GGATTAGTTGCGGCTATTCT+TGG | 0.352670 | 3.4:-65002069 | MS.gene05112:CDS |
| ACAAATCATTCGCCGGAATT+CGG | 0.374346 | 3.4:-65005818 | MS.gene05112:CDS |
| ACAAACATGGACGGAAATTC+GGG | 0.377233 | 3.4:-65005892 | None:intergenic |
| GTGTCAACACGTTGAATTCC+GGG | 0.384340 | 3.4:+65001627 | None:intergenic |
| GTCAGCTTCTGCAAAACTTC+AGG | 0.391576 | 3.4:+65001669 | None:intergenic |
| ACCTTCCTTTACAGTTTCAT+TGG | 0.399639 | 3.4:-65001709 | MS.gene05112:intron |
| ACTGAAATCGTTTGAGGAAG+TGG | 0.414318 | 3.4:-65005212 | MS.gene05112:CDS |
| ACGAATGCCCTCTCAACTTC+CGG | 0.416341 | 3.4:+65000981 | None:intergenic |
| TAAAAGAAGCACATGCCATT+GGG | 0.420081 | 3.4:-65001034 | MS.gene05112:CDS |
| TGCTACACTGAAATCGTTTG+AGG | 0.426036 | 3.4:-65005218 | MS.gene05112:CDS |
| AGTGTCAACACGTTGAATTC+CGG | 0.426219 | 3.4:+65001626 | None:intergenic |
| TGAGAGAGTTAACCGAATTC+CGG | 0.436260 | 3.4:+65005806 | None:intergenic |
| AATAAAGCTTGAGAAACTTC+CGG | 0.440596 | 3.4:-65001000 | MS.gene05112:CDS |
| TGACATCTGAACAACTACTA+TGG | 0.441953 | 3.4:-65002304 | MS.gene05112:CDS |
| AAAACGTGCTTACGTATTGT+TGG | 0.457947 | 3.4:+65000902 | None:intergenic |
| AAACGTGCTTACGTATTGTT+GGG | 0.479253 | 3.4:+65000903 | None:intergenic |
| TGTGCTCCGACCGTCGTGTA+TGG | 0.486612 | 3.4:+65005840 | None:intergenic |
| AGAAACTTCCGGAAGTTGAG+AGG | 0.491863 | 3.4:-65000989 | MS.gene05112:CDS |
| CTGCACCCTCAGCTTTCCGA+TGG | 0.492289 | 3.4:+65003065 | None:intergenic |
| TCCTTTACAGTTTCATTGGT+GGG | 0.493930 | 3.4:-65001705 | MS.gene05112:intron |
| GATGTGGTAACAAATGTAGT+TGG | 0.494730 | 3.4:-65002090 | MS.gene05112:CDS |
| TTGGAGAGATCAACATCAAA+AGG | 0.496185 | 3.4:+65005724 | None:intergenic |
| TTCCTTTACAGTTTCATTGG+TGG | 0.497731 | 3.4:-65001706 | MS.gene05112:intron |
| ACTGTCCGTGCATATACATT+TGG | 0.506933 | 3.4:-65001606 | MS.gene05112:CDS |
| TTACTGAGAACTGAGTGCTC+TGG | 0.508821 | 3.4:+65000930 | None:intergenic |
| TTGGCTTAAAGCGGTGGCGT+TGG | 0.514223 | 3.4:+65005705 | None:intergenic |
| GCCGCTGTCATGGCCACACT+TGG | 0.516267 | 3.4:-65003021 | MS.gene05112:intron |
| AAATTGGTCTCGCACTGTCA+TGG | 0.523148 | 3.4:-65001983 | MS.gene05112:CDS |
| CATGGACGGAAATTCGGGTT+CGG | 0.525274 | 3.4:-65005887 | MS.gene05112:CDS |
| TTAAAAGAAGCACATGCCAT+TGG | 0.531006 | 3.4:-65001035 | MS.gene05112:CDS |
| AGTTGATGCTGCAATAGCTA+TGG | 0.531279 | 3.4:+65003173 | None:intergenic |
| CTGTGGTGAAGCTTATACTC+TGG | 0.534229 | 3.4:-65002256 | MS.gene05112:CDS |
| ATTCGGGTTCGGATCCTACC+AGG | 0.539966 | 3.4:-65005876 | MS.gene05112:CDS |
| TGAGGATGATAAAGAAGAGC+AGG | 0.542893 | 3.4:-65005161 | MS.gene05112:CDS |
| TGTAGACATATGCGACGGTA+AGG | 0.543306 | 3.4:-65003203 | MS.gene05112:intron |
| CAAAAGGAGACTCAGAATCA+AGG | 0.545229 | 3.4:+65005740 | None:intergenic |
| TAATGGCTGGTGGTATACTC+TGG | 0.552021 | 3.4:-65003131 | MS.gene05112:CDS |
| AAGCTGAGGGTGCAGCCAGT+AGG | 0.553499 | 3.4:-65003057 | MS.gene05112:CDS |
| TCTCTGCTTGATCTAATGGC+TGG | 0.562790 | 3.4:-65003144 | MS.gene05112:CDS |
| TATGGCGGAGAGAAGCGGCC+TGG | 0.567284 | 3.4:+65005858 | None:intergenic |
| CGCACTGTCATGGAAAATGC+CGG | 0.570182 | 3.4:-65001973 | MS.gene05112:intron |
| GCGGAGAGAAGCGGCCTGGT+AGG | 0.572201 | 3.4:+65005862 | None:intergenic |
| TGCACCCTCAGCTTTCCGAT+GGG | 0.578891 | 3.4:+65003066 | None:intergenic |
| CATACCTTGGCTTAAAGCGG+TGG | 0.581443 | 3.4:+65005699 | None:intergenic |
| AAATGTAGTTGGATTAGTTG+CGG | 0.581893 | 3.4:-65002079 | MS.gene05112:CDS |
| AACGCCACCGCTTTAAGCCA+AGG | 0.585220 | 3.4:-65005703 | MS.gene05112:intron |
| GCAAGCAAAATAGCTCCTAT+CGG | 0.587887 | 3.4:+65002021 | None:intergenic |
| AGCTTCTGCAAAACTTCAGG+AGG | 0.593060 | 3.4:+65001672 | None:intergenic |
| CAAATTTGACTCACCAAGTG+TGG | 0.593321 | 3.4:+65003008 | None:intergenic |
| CTGCTTGATCTAATGGCTGG+TGG | 0.593383 | 3.4:-65003141 | MS.gene05112:CDS |
| TCGTGTATGGCGGAGAGAAG+CGG | 0.595818 | 3.4:+65005853 | None:intergenic |
| GAAACTTCCGGAAGTTGAGA+GGG | 0.597194 | 3.4:-65000988 | MS.gene05112:CDS |
| CTTCATACCTTGGCTTAAAG+CGG | 0.597723 | 3.4:+65005696 | None:intergenic |
| AAACACCAAATGTATATGCA+CGG | 0.607538 | 3.4:+65001601 | None:intergenic |
| CACTTACATCTGCATAGGCA+CGG | 0.608948 | 3.4:+65002201 | None:intergenic |
| TATTTGTAAAGTCTCCCCAA+TGG | 0.612851 | 3.4:+65001019 | None:intergenic |
| GCTCCGACCGTCGTGTATGG+CGG | 0.618205 | 3.4:+65005843 | None:intergenic |
| GGAGCACACAAATCATTCGC+CGG | 0.624667 | 3.4:-65005825 | MS.gene05112:CDS |
| CATTTGTTACCACATCAAAG+TGG | 0.624735 | 3.4:+65002097 | None:intergenic |
| AGGGACACTTACATCTGCAT+AGG | 0.625017 | 3.4:+65002196 | None:intergenic |
| ACATATGCGACGGTAAGGAG+TGG | 0.627570 | 3.4:-65003198 | MS.gene05112:CDS |
| ACTCAGAATCAAGGCAAGAA+CGG | 0.628154 | 3.4:+65005749 | None:intergenic |
| ACGGACTTTATCAGGAAGTG+TGG | 0.628556 | 3.4:+65005768 | None:intergenic |
| AATATCTATCAGTATCCCAT+CGG | 0.631874 | 3.4:-65003081 | MS.gene05112:CDS |
| TGAGGAAGTGGATGCTGTGG+TGG | 0.631977 | 3.4:-65005200 | MS.gene05112:CDS |
| TACTGGTGGATTGATCCGAT+AGG | 0.635998 | 3.4:-65002036 | MS.gene05112:CDS |
| ACCAAGTGTGGCCATGACAG+CGG | 0.639848 | 3.4:+65003020 | None:intergenic |
| CCTTAGTTGACAAACATGGA+CGG | 0.640184 | 3.4:-65005901 | None:intergenic |
| TATCATGATATTTGCAACTG+TGG | 0.649353 | 3.4:-65002273 | MS.gene05112:CDS |
| TCTCCGCCATACACGACGGT+CGG | 0.650705 | 3.4:-65005846 | MS.gene05112:CDS |
| AGTATCCCATCGGAAAGCTG+AGG | 0.651250 | 3.4:-65003071 | MS.gene05112:CDS |
| AAAAGAAGCACATGCCATTG+GGG | 0.652246 | 3.4:-65001033 | MS.gene05112:CDS |
| GTATCCCATCGGAAAGCTGA+GGG | 0.659180 | 3.4:-65003070 | MS.gene05112:CDS |
| GCAGGATCACCACTTTGATG+TGG | 0.659988 | 3.4:-65002106 | MS.gene05112:intron |
| CTTTATCAGGAAGTGTGGAG+AGG | 0.665062 | 3.4:+65005773 | None:intergenic |
| CTTCTCTCCGCCATACACGA+CGG | 0.675085 | 3.4:-65005850 | MS.gene05112:CDS |
| GGTAGACATTGAACTGCCAG+AGG | 0.681640 | 3.4:-65001066 | MS.gene05112:CDS |
| GGAATCTGACTGCATTGATG+AGG | 0.683331 | 3.4:-65005179 | MS.gene05112:CDS |
| TGTCAACACGTTGAATTCCG+GGG | 0.703454 | 3.4:+65001628 | None:intergenic |
| TATCTCGTTATAAGGCACCC+CGG | 0.706272 | 3.4:-65001645 | MS.gene05112:CDS |
| GTTTGAGGAAGTGGATGCTG+TGG | 0.706705 | 3.4:-65005203 | MS.gene05112:CDS |
| AGTGCGAGACCAATTTGTGA+TGG | 0.710232 | 3.4:+65001990 | None:intergenic |
| TGATGTGTAGACATATGCGA+CGG | 0.793459 | 3.4:-65003208 | MS.gene05112:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTCATTTACAATAAAAA+TGG | + | chr3.4:65003937-65003956 | None:intergenic | 10.0% |
| !!! | AGTTAAATTTTATAAAAATC+AGG | + | chr3.4:65005331-65005350 | None:intergenic | 10.0% |
| !!! | GATTTTTATAAAATTTAACT+TGG | - | chr3.4:65005331-65005350 | MS.gene05112:intron | 10.0% |
| !!! | TTAAGTTTTAAGAATAAATA+GGG | - | chr3.4:65002340-65002359 | MS.gene05112:CDS | 10.0% |
| !! | AATATTATTCTGTAATCAAA+AGG | - | chr3.4:65002452-65002471 | MS.gene05112:intron | 15.0% |
| !! | ATATTATTCTGTAATCAAAA+GGG | - | chr3.4:65002453-65002472 | MS.gene05112:intron | 15.0% |
| !! | ATTGTAAATGAATTTCAATT+TGG | - | chr3.4:65003942-65003961 | MS.gene05112:intron | 15.0% |
| !! | TGATATAGAAGAATAAAATA+GGG | + | chr3.4:65002484-65002503 | None:intergenic | 15.0% |
| !!! | AAAGTTTATTGATTTTTGTT+TGG | - | chr3.4:65001896-65001915 | MS.gene05112:intron | 15.0% |
| !!! | AAATTTTTTTTTTTGGTACA+AGG | - | chr3.4:65002037-65002056 | MS.gene05112:CDS | 15.0% |
| !!! | ATTTTTAAACTAGAACTTTT+TGG | - | chr3.4:65002102-65002121 | MS.gene05112:CDS | 15.0% |
| !!! | ATTTTTTGTTACTGTTATAA+AGG | - | chr3.4:65005396-65005415 | MS.gene05112:intron | 15.0% |
| !!! | GGAATCAAAATTTTTTTTTT+TGG | - | chr3.4:65002030-65002049 | MS.gene05112:CDS | 15.0% |
| !!! | GTTAAGTTTTAAGAATAAAT+AGG | - | chr3.4:65002339-65002358 | MS.gene05112:CDS | 15.0% |
| !!! | TAAGTTTTAAGAATAAATAG+GGG | - | chr3.4:65002341-65002360 | MS.gene05112:CDS | 15.0% |
| !!! | TATTGTTTTATTGATATTGA+AGG | - | chr3.4:65001699-65001718 | MS.gene05112:intron | 15.0% |
| !!! | TATTTTATGAAGTTGTTATA+AGG | - | chr3.4:65001508-65001527 | MS.gene05112:intron | 15.0% |
| !!! | TATTTTTGAGAAAAAAATAC+AGG | + | chr3.4:65003121-65003140 | None:intergenic | 15.0% |
| !!! | TTAATACTTTTTGACAATAT+TGG | - | chr3.4:65004359-65004378 | MS.gene05112:intron | 15.0% |
| !!! | TTTATTTGTTTTTGTTGAAA+AGG | - | chr3.4:65002167-65002186 | MS.gene05112:intron | 15.0% |
| !!! | TTTTAAAAATTTGTTCACAA+CGG | + | chr3.4:65004111-65004130 | None:intergenic | 15.0% |
| !! | AAAACAATAGATAGAGAAAA+AGG | - | chr3.4:65001238-65001257 | MS.gene05112:intron | 20.0% |
| !! | AAGTATTCATTCAGATATTT+GGG | - | chr3.4:65004297-65004316 | MS.gene05112:intron | 20.0% |
| !! | ATAATTAATTAAGTCAGTAG+TGG | - | chr3.4:65002313-65002332 | MS.gene05112:CDS | 20.0% |
| !! | ATTTCACAGAATCAATTTAT+AGG | - | chr3.4:65005242-65005261 | MS.gene05112:CDS | 20.0% |
| !! | CTGATATAGAAGAATAAAAT+AGG | + | chr3.4:65002485-65002504 | None:intergenic | 20.0% |
| !! | CTTCATTTATCCAAAAAAAA+TGG | - | chr3.4:65005290-65005309 | MS.gene05112:intron | 20.0% |
| !! | GTATGTTCAAAATGTAATAT+TGG | + | chr3.4:65005489-65005508 | None:intergenic | 20.0% |
| !! | TAATTAATTAAGTCAGTAGT+GGG | - | chr3.4:65002314-65002333 | MS.gene05112:CDS | 20.0% |
| !! | TATCTTTGTGATATTATGTT+TGG | + | chr3.4:65005670-65005689 | None:intergenic | 20.0% |
| !! | TTACAATATGCATATATTCT+TGG | - | chr3.4:65004880-65004899 | MS.gene05112:intron | 20.0% |
| !!! | AAATTAATTTGATGTAACTG+TGG | - | chr3.4:65002065-65002084 | MS.gene05112:CDS | 20.0% |
| !!! | ATTTGGTGTTTTATATTTTG+TGG | - | chr3.4:65005208-65005227 | MS.gene05112:CDS | 20.0% |
| !!! | GAAATTTTGTTTAGAATTAC+CGG | + | chr3.4:65004846-65004865 | None:intergenic | 20.0% |
| !!! | GTTTTCTATTAATTGCTTTA+CGG | + | chr3.4:65004457-65004476 | None:intergenic | 20.0% |
| !!! | TAGGATAATTTTCTTTTACT+AGG | - | chr3.4:65005585-65005604 | MS.gene05112:intron | 20.0% |
| !!! | TATCTTGTTATGACAAAAAT+AGG | - | chr3.4:65005566-65005585 | MS.gene05112:intron | 20.0% |
| !!! | TGTATTAAATTTCAAGTTTG+CGG | - | chr3.4:65001757-65001776 | MS.gene05112:intron | 20.0% |
| !!! | TGTATTGATTCGTTTATAAT+TGG | - | chr3.4:65001869-65001888 | MS.gene05112:intron | 20.0% |
| !!! | TGTTGTATAACCATTTTTTT+TGG | + | chr3.4:65005303-65005322 | None:intergenic | 20.0% |
| !!! | TTAGTGTTAATTTTTGACAT+AGG | - | chr3.4:65001965-65001984 | MS.gene05112:intron | 20.0% |
| !!! | TTTTATTCTTCTATATCAGT+TGG | - | chr3.4:65002486-65002505 | MS.gene05112:intron | 20.0% |
| !!! | TTTTCAGTTTAACTAAAGTT+TGG | - | chr3.4:65002009-65002028 | MS.gene05112:CDS | 20.0% |
| ! | AAATGAACAATATACAAGCT+AGG | + | chr3.4:65003829-65003848 | None:intergenic | 25.0% |
| ! | ACAAACAAAGTATATGATCA+AGG | - | chr3.4:65003146-65003165 | MS.gene05112:CDS | 25.0% |
| ! | AGTAGTTAATTATGCAGTTA+TGG | - | chr3.4:65002269-65002288 | MS.gene05112:CDS | 25.0% |
| ! | AGTATTCATTCAGATATTTG+GGG | - | chr3.4:65004298-65004317 | MS.gene05112:intron | 25.0% |
| ! | GTTGAAAATTCTAATGTCTT+TGG | - | chr3.4:65004042-65004061 | MS.gene05112:intron | 25.0% |
| ! | TGCAATAAAGAAATGAGTAT+GGG | - | chr3.4:65003050-65003069 | MS.gene05112:CDS | 25.0% |
| ! | TTCCTTAAACTCAGTAAATA+AGG | + | chr3.4:65004154-65004173 | None:intergenic | 25.0% |
| ! | TTGCAATAAAGAAATGAGTA+TGG | - | chr3.4:65003049-65003068 | MS.gene05112:CDS | 25.0% |
| !! | AATTTTTGACATAGGACAAA+CGG | - | chr3.4:65001973-65001992 | MS.gene05112:intron | 25.0% |
| !! | ACATAATTAACTTTTGCTTC+CGG | - | chr3.4:65004930-65004949 | MS.gene05112:intron | 25.0% |
| !! | ATTTAAGACGTAAATGCAAT+TGG | - | chr3.4:65004997-65005016 | MS.gene05112:intron | 25.0% |
| !! | GAAGTATTCATTCAGATATT+TGG | - | chr3.4:65004296-65004315 | MS.gene05112:intron | 25.0% |
| !! | GTCATTATACTTCAAGTTAT+GGG | - | chr3.4:65003199-65003218 | MS.gene05112:CDS | 25.0% |
| !! | TGATATTTGTACAACCATTT+TGG | + | chr3.4:65001322-65001341 | None:intergenic | 25.0% |
| !! | TGTCATTATACTTCAAGTTA+TGG | - | chr3.4:65003198-65003217 | MS.gene05112:CDS | 25.0% |
| !!! | ATTTATTTGGCGTTTTAAAC+CGG | - | chr3.4:65002767-65002786 | MS.gene05112:intron | 25.0% |
| !!! | ATTTGAATTTGATTTTGAGC+AGG | - | chr3.4:65005710-65005729 | MS.gene05112:CDS | 25.0% |
| !!! | TGATATTTTGACAACCATTT+TGG | - | chr3.4:65001170-65001189 | MS.gene05112:intron | 25.0% |
| !!! | TTCTTGGTGATAAATTTTAC+TGG | - | chr3.4:65004744-65004763 | MS.gene05112:intron | 25.0% |
| AAACACCAAATGTATATGCA+CGG | + | chr3.4:65005199-65005218 | None:intergenic | 30.0% | |
| AAGAAAACATGTCAATATGC+AGG | - | chr3.4:65004673-65004692 | MS.gene05112:intron | 30.0% | |
| AATAAAGCTTGAGAAACTTC+CGG | - | chr3.4:65005797-65005816 | MS.gene05112:CDS | 30.0% | |
| AATAATATTGCAGAACTTCG+AGG | + | chr3.4:65002441-65002460 | None:intergenic | 30.0% | |
| AATATCTATCAGTATCCCAT+CGG | - | chr3.4:65003716-65003735 | MS.gene05112:intron | 30.0% | |
| ACTAGCAAATAAATGTTCCT+CGG | + | chr3.4:65003999-65004018 | None:intergenic | 30.0% | |
| ATAATATTGCAGAACTTCGA+GGG | + | chr3.4:65002440-65002459 | None:intergenic | 30.0% | |
| ATGTAACTGTGGTTATAGAA+TGG | - | chr3.4:65002076-65002095 | MS.gene05112:CDS | 30.0% | |
| CAATTTACACCATCACAAAT+TGG | - | chr3.4:65004798-65004817 | MS.gene05112:intron | 30.0% | |
| GCAATAAAGAAATGAGTATG+GGG | - | chr3.4:65003051-65003070 | MS.gene05112:CDS | 30.0% | |
| GGTTGAATTTATGTGTGTAT+AGG | - | chr3.4:65001529-65001548 | MS.gene05112:intron | 30.0% | |
| GTACAAAAGTTGTACCAAAA+TGG | - | chr3.4:65001305-65001324 | MS.gene05112:intron | 30.0% | |
| TAAGGAAATCATTCAGCTAT+AGG | - | chr3.4:65004167-65004186 | MS.gene05112:intron | 30.0% | |
| TACATGAACATTAGTATGTG+AGG | + | chr3.4:65005626-65005645 | None:intergenic | 30.0% | |
| TATCATGATATTTGCAACTG+TGG | - | chr3.4:65004524-65004543 | MS.gene05112:intron | 30.0% | |
| TGAATCCAAACATATGAATC+TGG | + | chr3.4:65001786-65001805 | None:intergenic | 30.0% | |
| TTATAAAGGAATGTGCGTAA+TGG | - | chr3.4:65005410-65005429 | MS.gene05112:intron | 30.0% | |
| ! | CATTGAATCTATTTTGCTAC+AGG | - | chr3.4:65004411-65004430 | MS.gene05112:intron | 30.0% |
| ! | GTCCTTATTTACTGAGTTTA+AGG | - | chr3.4:65004149-65004168 | MS.gene05112:intron | 30.0% |
| ! | TGGTGTTTTATATTTTGTGG+AGG | - | chr3.4:65005211-65005230 | MS.gene05112:CDS | 30.0% |
| !! | AAATGTAGTTGGATTAGTTG+CGG | - | chr3.4:65004718-65004737 | MS.gene05112:intron | 30.0% |
| !! | TTGGTGATAAATTTTACTGG+TGG | - | chr3.4:65004747-65004766 | MS.gene05112:intron | 30.0% |
| !! | TTGTTGTTCTCTTTTCTCAT+TGG | - | chr3.4:65001212-65001231 | MS.gene05112:intron | 30.0% |
| !!! | TCTTTTTCCTTTGAGTTGAA+TGG | - | chr3.4:65003878-65003897 | MS.gene05112:intron | 30.0% |
| AACAGCATAAGGGCTATATA+CGG | + | chr3.4:65004084-65004103 | None:intergenic | 35.0% | |
| AAGAATAAATAGGGGAGAGA+AGG | - | chr3.4:65002349-65002368 | MS.gene05112:CDS | 35.0% | |
| ACCAATGAAACTGTAAAGGA+AGG | + | chr3.4:65005092-65005111 | None:intergenic | 35.0% | |
| ACCTTCCTTTACAGTTTCAT+TGG | - | chr3.4:65005088-65005107 | MS.gene05112:intron | 35.0% | |
| ACTGACATTCAAAGCTAACT+AGG | + | chr3.4:65005539-65005558 | None:intergenic | 35.0% | |
| AGAATAAATAGGGGAGAGAA+GGG | - | chr3.4:65002350-65002369 | MS.gene05112:CDS | 35.0% | |
| AGATTCTCTGCTTGATCTAA+TGG | - | chr3.4:65003649-65003668 | MS.gene05112:intron | 35.0% | |
| AGCTGACATATCTCGTTATA+AGG | - | chr3.4:65005144-65005163 | MS.gene05112:CDS | 35.0% | |
| AGGTTTGGAAGATGTAGAAA+TGG | - | chr3.4:65002935-65002954 | MS.gene05112:intron | 35.0% | |
| ATACAGGATGATTGATGTCA+TGG | + | chr3.4:65003105-65003124 | None:intergenic | 35.0% | |
| CACAATAAGAGAAACCTAAC+TGG | + | chr3.4:65005438-65005457 | None:intergenic | 35.0% | |
| CACAATCATGACATGCATAT+GGG | + | chr3.4:65002988-65003007 | None:intergenic | 35.0% | |
| GAACAACAAAGTTGTCTCAA+AGG | + | chr3.4:65001201-65001220 | None:intergenic | 35.0% | |
| GATGTAATTTCAGAAGCAGT+GGG | + | chr3.4:65004337-65004356 | None:intergenic | 35.0% | |
| GATGTGGTAACAAATGTAGT+TGG | - | chr3.4:65004707-65004726 | MS.gene05112:intron | 35.0% | |
| GGTTTGGAAGATGTAGAAAT+GGG | - | chr3.4:65002936-65002955 | MS.gene05112:intron | 35.0% | |
| GTTTGGAAGATGTAGAAATG+GGG | - | chr3.4:65002937-65002956 | MS.gene05112:intron | 35.0% | |
| TATAGGTTATAGCTGATGAC+AGG | - | chr3.4:65004184-65004203 | MS.gene05112:intron | 35.0% | |
| TATTTGTAAAGTCTCCCCAA+TGG | + | chr3.4:65005781-65005800 | None:intergenic | 35.0% | |
| TCATTCACCATTCAACTCAA+AGG | + | chr3.4:65003888-65003907 | None:intergenic | 35.0% | |
| TCCTTTACAGTTTCATTGGT+GGG | - | chr3.4:65005092-65005111 | MS.gene05112:intron | 35.0% | |
| TCTCAAAGGTTGTACCAAAA+TGG | + | chr3.4:65001187-65001206 | None:intergenic | 35.0% | |
| TGACATCTGAACAACTACTA+TGG | - | chr3.4:65004493-65004512 | MS.gene05112:intron | 35.0% | |
| TGATGTAATTTCAGAAGCAG+TGG | + | chr3.4:65004338-65004357 | None:intergenic | 35.0% | |
| TGTTCTCGCTTGCATTTATT+TGG | - | chr3.4:65002754-65002773 | MS.gene05112:intron | 35.0% | |
| TTATGATATCCTTCACCTTG+AGG | - | chr3.4:65003236-65003255 | MS.gene05112:intron | 35.0% | |
| TTCCTTTACAGTTTCATTGG+TGG | - | chr3.4:65005091-65005110 | MS.gene05112:intron | 35.0% | |
| TTGGAGAGATCAACATCAAA+AGG | + | chr3.4:65001076-65001095 | None:intergenic | 35.0% | |
| ! | ACTAGAACTTTTTGGATGCT+TGG | - | chr3.4:65002110-65002129 | MS.gene05112:intron | 35.0% |
| ! | ATCAGTTGGTTTCTATCAAC+TGG | - | chr3.4:65002500-65002519 | MS.gene05112:intron | 35.0% |
| ! | ATCTGTCTTTTTGACCTTAC+CGG | + | chr3.4:65004952-65004971 | None:intergenic | 35.0% |
| ! | ATGGCATGTGCTTCTTTTAA+CGG | + | chr3.4:65005762-65005781 | None:intergenic | 35.0% |
| ! | ATTAACTTTTGCTTCCGGTA+AGG | - | chr3.4:65004935-65004954 | MS.gene05112:intron | 35.0% |
| ! | CATTTGTTACCACATCAAAG+TGG | + | chr3.4:65004703-65004722 | None:intergenic | 35.0% |
| ! | CTATTTTGCTACAGGTTTTC+AGG | - | chr3.4:65004419-65004438 | MS.gene05112:intron | 35.0% |
| ! | GAAACTGTAAAGGAAGGTAT+CGG | + | chr3.4:65005086-65005105 | None:intergenic | 35.0% |
| ! | TAAAAGAAGCACATGCCATT+GGG | - | chr3.4:65005763-65005782 | MS.gene05112:CDS | 35.0% |
| ! | TCAGATGTCATCTTTTCACT+AGG | + | chr3.4:65004483-65004502 | None:intergenic | 35.0% |
| ! | TCTTTTAACGGTAATTCCTC+TGG | + | chr3.4:65005750-65005769 | None:intergenic | 35.0% |
| ! | TTAAAAGAAGCACATGCCAT+TGG | - | chr3.4:65005762-65005781 | MS.gene05112:CDS | 35.0% |
| ! | TTAATTAAGTCAGTAGTGGG+AGG | - | chr3.4:65002317-65002336 | MS.gene05112:CDS | 35.0% |
| !!! | AGGTTTTCAGGTGTTATTCA+CGG | - | chr3.4:65004431-65004450 | MS.gene05112:intron | 35.0% |
| AAAGAGAGATACACCAGATG+AGG | - | chr3.4:65002638-65002657 | MS.gene05112:intron | 40.0% | |
| AAAGATTCACCTTGTCCTCA+AGG | + | chr3.4:65003254-65003273 | None:intergenic | 40.0% | |
| AACCACTCCAATTCAGTTTC+AGG | + | chr3.4:65002834-65002853 | None:intergenic | 40.0% | |
| AACCTGAAACTGAATTGGAG+TGG | - | chr3.4:65002829-65002848 | MS.gene05112:intron | 40.0% | |
| AAGCTCCATTTCTGCCATAA+CGG | + | chr3.4:65002556-65002575 | None:intergenic | 40.0% | |
| AATGGAACAGGAGAGCAAAA+CGG | - | chr3.4:65003010-65003029 | MS.gene05112:intron | 40.0% | |
| ACAAATCATTCGCCGGAATT+CGG | - | chr3.4:65000979-65000998 | MS.gene05112:CDS | 40.0% | |
| ACAACGGAATGAACAGCATA+AGG | + | chr3.4:65004095-65004114 | None:intergenic | 40.0% | |
| ACTCAGAATCAAGGCAAGAA+CGG | + | chr3.4:65001051-65001070 | None:intergenic | 40.0% | |
| ACTGAAATCGTTTGAGGAAG+TGG | - | chr3.4:65001585-65001604 | MS.gene05112:intron | 40.0% | |
| ACTGTCCGTGCATATACATT+TGG | - | chr3.4:65005191-65005210 | MS.gene05112:CDS | 40.0% | |
| AGAGATAAGGGGAACTACTA+TGG | - | chr3.4:65003076-65003095 | MS.gene05112:CDS | 40.0% | |
| AGAGGAACCTGAAACTGAAT+TGG | - | chr3.4:65002824-65002843 | MS.gene05112:intron | 40.0% | |
| AGGACAAGGTGAATCTTTAG+GGG | - | chr3.4:65003256-65003275 | MS.gene05112:intron | 40.0% | |
| AGTGTCAACACGTTGAATTC+CGG | + | chr3.4:65005174-65005193 | None:intergenic | 40.0% | |
| ATGGCAAAGAAGATGCATAC+TGG | - | chr3.4:65002586-65002605 | MS.gene05112:intron | 40.0% | |
| CAAAAGGAGACTCAGAATCA+AGG | + | chr3.4:65001060-65001079 | None:intergenic | 40.0% | |
| CAAATTTGACTCACCAAGTG+TGG | + | chr3.4:65003792-65003811 | None:intergenic | 40.0% | |
| CAACGGAATGAACAGCATAA+GGG | + | chr3.4:65004094-65004113 | None:intergenic | 40.0% | |
| CATGATTGTGGAAATGGAAC+AGG | - | chr3.4:65002998-65003017 | MS.gene05112:intron | 40.0% | |
| CCACAATCATGACATGCATA+TGG | + | chr3.4:65002989-65003008 | None:intergenic | 40.0% | |
| CCATATGCATGTCATGATTG+TGG | - | chr3.4:65002986-65003005 | MS.gene05112:intron | 40.0% | |
| CTCTTGTCTAAGTATCTGAC+TGG | - | chr3.4:65004020-65004039 | MS.gene05112:intron | 40.0% | |
| CTTCATACCTTGGCTTAAAG+CGG | + | chr3.4:65001104-65001123 | None:intergenic | 40.0% | |
| GAAGCAAACATCAGAAGAGA+GGG | + | chr3.4:65004623-65004642 | None:intergenic | 40.0% | |
| GAGATAAGGGGAACTACTAT+GGG | - | chr3.4:65003077-65003096 | MS.gene05112:CDS | 40.0% | |
| GAGGACAAGGTGAATCTTTA+GGG | - | chr3.4:65003255-65003274 | MS.gene05112:intron | 40.0% | |
| GATAGGAGAAGAGAAAGGTT+TGG | - | chr3.4:65002920-65002939 | MS.gene05112:intron | 40.0% | |
| GATATCATAAGTGTCCACCT+GGG | + | chr3.4:65003226-65003245 | None:intergenic | 40.0% | |
| GCAAAAACAACTATGCCTAC+TGG | + | chr3.4:65003758-65003777 | None:intergenic | 40.0% | |
| GCAAGCAAAATAGCTCCTAT+CGG | + | chr3.4:65004779-65004798 | None:intergenic | 40.0% | |
| GCATGTCATGATTGTGGAAA+TGG | - | chr3.4:65002992-65003011 | MS.gene05112:intron | 40.0% | |
| GGCACTATAGCATAAGCATA+TGG | + | chr3.4:65003978-65003997 | None:intergenic | 40.0% | |
| GTGTTATCACATGTGTAAGC+AGG | - | chr3.4:65001375-65001394 | MS.gene05112:intron | 40.0% | |
| TATGCCAACTAACCTGTTGA+TGG | + | chr3.4:65002734-65002753 | None:intergenic | 40.0% | |
| TCCCACCAATGAAACTGTAA+AGG | + | chr3.4:65005096-65005115 | None:intergenic | 40.0% | |
| TCCTCTTCTTCATCAGACAT+AGG | + | chr3.4:65002810-65002829 | None:intergenic | 40.0% | |
| TGAAGCAAACATCAGAAGAG+AGG | + | chr3.4:65004624-65004643 | None:intergenic | 40.0% | |
| TGAGAGAGTTAACCGAATTC+CGG | + | chr3.4:65000994-65001013 | None:intergenic | 40.0% | |
| TGAGGACAAGGTGAATCTTT+AGG | - | chr3.4:65003254-65003273 | MS.gene05112:intron | 40.0% | |
| TGAGGATGATAAAGAAGAGC+AGG | - | chr3.4:65001636-65001655 | MS.gene05112:CDS | 40.0% | |
| TGATGTGTAGACATATGCGA+CGG | - | chr3.4:65003589-65003608 | MS.gene05112:intron | 40.0% | |
| TGCTACACTGAAATCGTTTG+AGG | - | chr3.4:65001579-65001598 | MS.gene05112:intron | 40.0% | |
| ! | AAAAGAAGCACATGCCATTG+GGG | - | chr3.4:65005764-65005783 | MS.gene05112:CDS | 40.0% |
| ! | AGTTGATGCTGCAATAGCTA+TGG | + | chr3.4:65003627-65003646 | None:intergenic | 40.0% |
| !! | GCGTTTTAAACCGGAATATC+GGG | - | chr3.4:65002776-65002795 | MS.gene05112:intron | 40.0% |
| !! | GGCGTTTTAAACCGGAATAT+CGG | - | chr3.4:65002775-65002794 | MS.gene05112:intron | 40.0% |
| ACACCTCCCTAATGCCAAAA+TGG | + | chr3.4:65002414-65002433 | None:intergenic | 45.0% | |
| ACCTTTCTCTTCTCCTATCG+CGG | + | chr3.4:65002919-65002938 | None:intergenic | 45.0% | |
| ACGGACTTTATCAGGAAGTG+TGG | + | chr3.4:65001032-65001051 | None:intergenic | 45.0% | |
| AGAAACTTCCGGAAGTTGAG+AGG | - | chr3.4:65005808-65005827 | MS.gene05112:CDS | 45.0% | |
| AGCTTCTGCAAAACTTCAGG+AGG | + | chr3.4:65005128-65005147 | None:intergenic | 45.0% | |
| AGGGACACTTACATCTGCAT+AGG | + | chr3.4:65004604-65004623 | None:intergenic | 45.0% | |
| AGTATGGGGTCAGAGATAAG+GGG | - | chr3.4:65003065-65003084 | MS.gene05112:CDS | 45.0% | |
| AGTGCGAGACCAATTTGTGA+TGG | + | chr3.4:65004810-65004829 | None:intergenic | 45.0% | |
| ATCTGAGGATTTGACTGGGA+AGG | - | chr3.4:65002386-65002405 | MS.gene05112:intron | 45.0% | |
| ATGCTTATGCTATAGTGCCG+AGG | - | chr3.4:65003979-65003998 | MS.gene05112:intron | 45.0% | |
| ATGGAGCTTCGAGTGTTTGA+TGG | - | chr3.4:65002567-65002586 | MS.gene05112:intron | 45.0% | |
| CAACCACAAGATAGTGACCA+GGG | - | chr3.4:65002879-65002898 | MS.gene05112:intron | 45.0% | |
| CACTTACATCTGCATAGGCA+CGG | + | chr3.4:65004599-65004618 | None:intergenic | 45.0% | |
| CTGTGGTGAAGCTTATACTC+TGG | - | chr3.4:65004541-65004560 | MS.gene05112:intron | 45.0% | |
| GAAACTTCCGGAAGTTGAGA+GGG | - | chr3.4:65005809-65005828 | MS.gene05112:CDS | 45.0% | |
| GAGTATGGGGTCAGAGATAA+GGG | - | chr3.4:65003064-65003083 | MS.gene05112:CDS | 45.0% | |
| GCAAAGAAGATGCATACTGG+TGG | - | chr3.4:65002589-65002608 | MS.gene05112:intron | 45.0% | |
| GCCTATGTCTGATGAAGAAG+AGG | - | chr3.4:65002806-65002825 | MS.gene05112:intron | 45.0% | |
| GGACAAGGTGAATCTTTAGG+GGG | - | chr3.4:65003257-65003276 | MS.gene05112:intron | 45.0% | |
| GGATATCATAAGTGTCCACC+TGG | + | chr3.4:65003227-65003246 | None:intergenic | 45.0% | |
| GGCATGATATCCCGATATTC+CGG | + | chr3.4:65002789-65002808 | None:intergenic | 45.0% | |
| GGTCGCCAGATTCATATGTT+TGG | - | chr3.4:65001778-65001797 | MS.gene05112:intron | 45.0% | |
| GTCAGCTTCTGCAAAACTTC+AGG | + | chr3.4:65005131-65005150 | None:intergenic | 45.0% | |
| GTGTCAACACGTTGAATTCC+GGG | + | chr3.4:65005173-65005192 | None:intergenic | 45.0% | |
| TAATGGCTGGTGGTATACTC+TGG | - | chr3.4:65003666-65003685 | MS.gene05112:intron | 45.0% | |
| TATCCTTCACCTTGAGGACA+AGG | - | chr3.4:65003242-65003261 | MS.gene05112:intron | 45.0% | |
| TCAACCACAAGATAGTGACC+AGG | - | chr3.4:65002878-65002897 | MS.gene05112:intron | 45.0% | |
| TCACTGACACCTCTGATCAA+AGG | + | chr3.4:65001448-65001467 | None:intergenic | 45.0% | |
| TCTCTGCTTGATCTAATGGC+TGG | - | chr3.4:65003653-65003672 | MS.gene05112:intron | 45.0% | |
| TCTGACACACCTTTGATCAG+AGG | - | chr3.4:65001436-65001455 | MS.gene05112:intron | 45.0% | |
| TCTGAGGATTTGACTGGGAA+GGG | - | chr3.4:65002387-65002406 | MS.gene05112:intron | 45.0% | |
| TCTGTCAGTTTCTCCTCATC+TGG | + | chr3.4:65002654-65002673 | None:intergenic | 45.0% | |
| TGAGTATGGGGTCAGAGATA+AGG | - | chr3.4:65003063-65003082 | MS.gene05112:CDS | 45.0% | |
| TGGTACCGTTATGGCAGAAA+TGG | - | chr3.4:65002548-65002567 | MS.gene05112:intron | 45.0% | |
| TGTAGACATATGCGACGGTA+AGG | - | chr3.4:65003594-65003613 | MS.gene05112:intron | 45.0% | |
| TGTCAACACGTTGAATTCCG+GGG | + | chr3.4:65005172-65005191 | None:intergenic | 45.0% | |
| TTACTGAGAACTGAGTGCTC+TGG | + | chr3.4:65005870-65005889 | None:intergenic | 45.0% | |
| TTTCCCTGGTCACTATCTTG+TGG | + | chr3.4:65002885-65002904 | None:intergenic | 45.0% | |
| TTTCTGCCATAACGGTACCA+CGG | + | chr3.4:65002548-65002567 | None:intergenic | 45.0% | |
| ! | AAATTGGTCTCGCACTGTCA+TGG | - | chr3.4:65004814-65004833 | MS.gene05112:intron | 45.0% |
| ! | ACAAGGTGAATCTTTAGGGG+GGG | - | chr3.4:65003259-65003278 | MS.gene05112:intron | 45.0% |
| ! | AGGCAAGAACGGACTTTATC+AGG | + | chr3.4:65001040-65001059 | None:intergenic | 45.0% |
| ! | CTGATCAAAGGTGTGTCAGA+TGG | + | chr3.4:65001436-65001455 | None:intergenic | 45.0% |
| ! | CTTTATCAGGAAGTGTGGAG+AGG | + | chr3.4:65001027-65001046 | None:intergenic | 45.0% |
| ! | GACAAGGTGAATCTTTAGGG+GGG | - | chr3.4:65003258-65003277 | MS.gene05112:intron | 45.0% |
| ! | GATGCGTTGATGTTACTCAG+AGG | - | chr3.4:65002672-65002691 | MS.gene05112:intron | 45.0% |
| ! | GGAATCTGACTGCATTGATG+AGG | - | chr3.4:65001618-65001637 | MS.gene05112:CDS | 45.0% |
| ! | TACTTCAAGTTATGGGACCC+AGG | - | chr3.4:65003206-65003225 | MS.gene05112:intron | 45.0% |
| ! | TATCTCGTTATAAGGCACCC+CGG | - | chr3.4:65005152-65005171 | MS.gene05112:CDS | 45.0% |
| !! | AAGGGGCCATTTTGGCATTA+GGG | - | chr3.4:65002405-65002424 | MS.gene05112:intron | 45.0% |
| !! | GGATTAGTTGCGGCTATTCT+TGG | - | chr3.4:65004728-65004747 | MS.gene05112:intron | 45.0% |
| !! | TACTGGTGGATTGATCCGAT+AGG | - | chr3.4:65004761-65004780 | MS.gene05112:intron | 45.0% |
| !! | TGGTATCAGAGCATCGATCT+TGG | - | chr3.4:65002520-65002539 | MS.gene05112:intron | 45.0% |
| !! | TGTGCGTAATGGATCCAGTT+AGG | - | chr3.4:65005421-65005440 | MS.gene05112:intron | 45.0% |
| !!! | AGTTGTTTTTGCCGCTGTCA+TGG | - | chr3.4:65003766-65003785 | MS.gene05112:intron | 45.0% |
| AATCCAAATCCCACCGCGAT+AGG | - | chr3.4:65002903-65002922 | MS.gene05112:intron | 50.0% | |
| ACACGTATCAGTGTCGTGTC+TGG | + | chr3.4:65001133-65001152 | None:intergenic | 50.0% | |
| ACATATGCGACGGTAAGGAG+TGG | - | chr3.4:65003599-65003618 | MS.gene05112:intron | 50.0% | |
| ACCGCGATAGGAGAAGAGAA+AGG | - | chr3.4:65002915-65002934 | MS.gene05112:intron | 50.0% | |
| ACGAATGCCCTCTCAACTTC+CGG | + | chr3.4:65005819-65005838 | None:intergenic | 50.0% | |
| AGGGGAGAGAAGGGAAGATT+GGG | - | chr3.4:65002359-65002378 | MS.gene05112:CDS | 50.0% | |
| AGTATCCCATCGGAAAGCTG+AGG | - | chr3.4:65003726-65003745 | MS.gene05112:intron | 50.0% | |
| CATACCTTGGCTTAAAGCGG+TGG | + | chr3.4:65001101-65001120 | None:intergenic | 50.0% | |
| CGCACTGTCATGGAAAATGC+CGG | - | chr3.4:65004824-65004843 | MS.gene05112:intron | 50.0% | |
| CTGAGGATTTGACTGGGAAG+GGG | - | chr3.4:65002388-65002407 | MS.gene05112:intron | 50.0% | |
| CTGCTTGATCTAATGGCTGG+TGG | - | chr3.4:65003656-65003675 | MS.gene05112:intron | 50.0% | |
| GACGCCATCAACAGGTTAGT+TGG | - | chr3.4:65002727-65002746 | MS.gene05112:intron | 50.0% | |
| GATTCCACCAGTGTGACCAT+TGG | + | chr3.4:65002707-65002726 | None:intergenic | 50.0% | |
| GCAGGATCACCACTTTGATG+TGG | - | chr3.4:65004691-65004710 | MS.gene05112:intron | 50.0% | |
| GGAGCACACAAATCATTCGC+CGG | - | chr3.4:65000972-65000991 | MS.gene05112:CDS | 50.0% | |
| GGGCATCTGAGGATTTGACT+GGG | - | chr3.4:65002382-65002401 | MS.gene05112:intron | 50.0% | |
| GGTAGACATTGAACTGCCAG+AGG | - | chr3.4:65005731-65005750 | MS.gene05112:CDS | 50.0% | |
| GTATCCCATCGGAAAGCTGA+GGG | - | chr3.4:65003727-65003746 | MS.gene05112:intron | 50.0% | |
| GTTTGAGGAAGTGGATGCTG+TGG | - | chr3.4:65001594-65001613 | MS.gene05112:CDS | 50.0% | |
| TAGGGGAGAGAAGGGAAGAT+TGG | - | chr3.4:65002358-65002377 | MS.gene05112:CDS | 50.0% | |
| TCACCTTGTCCTCAAGGTGA+AGG | + | chr3.4:65003248-65003267 | None:intergenic | 50.0% | |
| TTCTCTTCTCCTATCGCGGT+GGG | + | chr3.4:65002915-65002934 | None:intergenic | 50.0% | |
| TTGGAACCGTGGTACCGTTA+TGG | - | chr3.4:65002539-65002558 | MS.gene05112:intron | 50.0% | |
| TTGGAGTGGTTGACGACTCA+AGG | - | chr3.4:65002843-65002862 | MS.gene05112:intron | 50.0% | |
| TTTCTCTTCTCCTATCGCGG+TGG | + | chr3.4:65002916-65002935 | None:intergenic | 50.0% | |
| ! | CTGGTGTCAGCTTCATACCT+TGG | + | chr3.4:65001114-65001133 | None:intergenic | 50.0% |
| ! | TTCAAGTTATGGGACCCAGG+TGG | - | chr3.4:65003209-65003228 | MS.gene05112:intron | 50.0% |
| !! | GAAGGGGCCATTTTGGCATT+AGG | - | chr3.4:65002404-65002423 | MS.gene05112:intron | 50.0% |
| ACCAAGTGTGGCCATGACAG+CGG | + | chr3.4:65003780-65003799 | None:intergenic | 55.0% | |
| CGGTGGGATTTGGATTTCCC+TGG | + | chr3.4:65002899-65002918 | None:intergenic | 55.0% | |
| CTGGTGGCTGCTATGCATTG+AGG | - | chr3.4:65002605-65002624 | MS.gene05112:intron | 55.0% | |
| CTTCTCTCCGCCATACACGA+CGG | - | chr3.4:65000947-65000966 | MS.gene05112:CDS | 55.0% | |
| GGAGAGAAGGGAAGATTGGG+GGG | - | chr3.4:65002362-65002381 | MS.gene05112:CDS | 55.0% | |
| GGGAGAGAAGGGAAGATTGG+GGG | - | chr3.4:65002361-65002380 | MS.gene05112:CDS | 55.0% | |
| GGGGAGAGAAGGGAAGATTG+GGG | - | chr3.4:65002360-65002379 | MS.gene05112:CDS | 55.0% | |
| GTGGAATCGACGCCATCAAC+AGG | - | chr3.4:65002719-65002738 | MS.gene05112:intron | 55.0% | |
| TCTCCTATCGCGGTGGGATT+TGG | + | chr3.4:65002909-65002928 | None:intergenic | 55.0% | |
| TGAGGAAGTGGATGCTGTGG+TGG | - | chr3.4:65001597-65001616 | MS.gene05112:CDS | 55.0% | |
| TGCACCCTCAGCTTTCCGAT+GGG | + | chr3.4:65003734-65003753 | None:intergenic | 55.0% | |
| TTGGCTTAAAGCGGTGGCGT+TGG | + | chr3.4:65001095-65001114 | None:intergenic | 55.0% | |
| ! | AACGCCACCGCTTTAAGCCA+AGG | - | chr3.4:65001094-65001113 | MS.gene05112:intron | 55.0% |
| ! | ATTCGGGTTCGGATCCTACC+AGG | - | chr3.4:65000921-65000940 | MS.gene05112:CDS | 55.0% |
| ! | GGGGCATCTGAGGATTTGAC+TGG | - | chr3.4:65002381-65002400 | MS.gene05112:intron | 55.0% |
| ! | TCGTGTATGGCGGAGAGAAG+CGG | + | chr3.4:65000947-65000966 | None:intergenic | 55.0% |
| ! | TGACTGGGAAGGGGCCATTT+TGG | - | chr3.4:65002397-65002416 | MS.gene05112:intron | 55.0% |
| !! | GAGCATCGATCTTGGAACCG+TGG | - | chr3.4:65002528-65002547 | MS.gene05112:intron | 55.0% |
| !! | GGGCCATTTTGGCATTAGGG+AGG | - | chr3.4:65002408-65002427 | MS.gene05112:intron | 55.0% |
| CTCGCCAATGGTCACACTGG+TGG | - | chr3.4:65002700-65002719 | MS.gene05112:intron | 60.0% | |
| CTGCACCCTCAGCTTTCCGA+TGG | + | chr3.4:65003735-65003754 | None:intergenic | 60.0% | |
| GTGCTCGCCAATGGTCACAC+TGG | - | chr3.4:65002697-65002716 | MS.gene05112:intron | 60.0% | |
| TCAGAGGTCGTGCTCGCCAA+TGG | - | chr3.4:65002688-65002707 | MS.gene05112:intron | 60.0% | |
| TCTCCGCCATACACGACGGT+CGG | - | chr3.4:65000951-65000970 | MS.gene05112:CDS | 60.0% | |
| TGTGCTCCGACCGTCGTGTA+TGG | + | chr3.4:65000960-65000979 | None:intergenic | 60.0% | |
| ! | AAGCTGAGGGTGCAGCCAGT+AGG | - | chr3.4:65003740-65003759 | MS.gene05112:intron | 60.0% |
| !! | GGAAGATTGGGGGGCATCTG+AGG | - | chr3.4:65002371-65002390 | MS.gene05112:intron | 60.0% |
| GCCGCTGTCATGGCCACACT+TGG | - | chr3.4:65003776-65003795 | MS.gene05112:intron | 65.0% | |
| GCTCCGACCGTCGTGTATGG+CGG | + | chr3.4:65000957-65000976 | None:intergenic | 65.0% | |
| ! | TATGGCGGAGAGAAGCGGCC+TGG | + | chr3.4:65000942-65000961 | None:intergenic | 65.0% |
| GCGGAGAGAAGCGGCCTGGT+AGG | + | chr3.4:65000938-65000957 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 65000911 | 65005908 | 65000911 | ID=MS.gene05112 |
| chr3.4 | mRNA | 65000911 | 65005908 | 65000911 | ID=MS.gene05112.t1;Parent=MS.gene05112 |
| chr3.4 | exon | 65005704 | 65005908 | 65005704 | ID=MS.gene05112.t1.exon1;Parent=MS.gene05112.t1 |
| chr3.4 | CDS | 65005704 | 65005908 | 65005704 | ID=cds.MS.gene05112.t1;Parent=MS.gene05112.t1 |
| chr3.4 | exon | 65005099 | 65005268 | 65005099 | ID=MS.gene05112.t1.exon2;Parent=MS.gene05112.t1 |
| chr3.4 | CDS | 65005099 | 65005268 | 65005099 | ID=cds.MS.gene05112.t1;Parent=MS.gene05112.t1 |
| chr3.4 | exon | 65003022 | 65003220 | 65003022 | ID=MS.gene05112.t1.exon3;Parent=MS.gene05112.t1 |
| chr3.4 | CDS | 65003022 | 65003220 | 65003022 | ID=cds.MS.gene05112.t1;Parent=MS.gene05112.t1 |
| chr3.4 | exon | 65002208 | 65002386 | 65002208 | ID=MS.gene05112.t1.exon4;Parent=MS.gene05112.t1 |
| chr3.4 | CDS | 65002208 | 65002386 | 65002208 | ID=cds.MS.gene05112.t1;Parent=MS.gene05112.t1 |
| chr3.4 | exon | 65001974 | 65002124 | 65001974 | ID=MS.gene05112.t1.exon5;Parent=MS.gene05112.t1 |
| chr3.4 | CDS | 65001974 | 65002124 | 65001974 | ID=cds.MS.gene05112.t1;Parent=MS.gene05112.t1 |
| chr3.4 | exon | 65001587 | 65001717 | 65001587 | ID=MS.gene05112.t1.exon6;Parent=MS.gene05112.t1 |
| chr3.4 | CDS | 65001587 | 65001717 | 65001587 | ID=cds.MS.gene05112.t1;Parent=MS.gene05112.t1 |
| chr3.4 | exon | 65000911 | 65001087 | 65000911 | ID=MS.gene05112.t1.exon7;Parent=MS.gene05112.t1 |
| chr3.4 | CDS | 65000911 | 65001087 | 65000911 | ID=cds.MS.gene05112.t1;Parent=MS.gene05112.t1 |
| Gene Sequence |
| Protein sequence |
