Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78686.t1 | XP_003616059.1 | 97 | 395 | 12 | 0 | 1 | 395 | 1 | 395 | 1.70E-212 | 748.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78686.t1 | Q10PP8 | 71.0 | 397 | 102 | 5 | 4 | 395 | 7 | 395 | 1.3e-149 | 530.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78686.t1 | G7K0W2 | 97.0 | 395 | 12 | 0 | 1 | 395 | 1 | 395 | 1.2e-212 | 748.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene045727 | MS.gene78686 | PPI |
| MS.gene032465 | MS.gene78686 | PPI |
| MS.gene78686 | MS.gene069718 | PPI |
| MS.gene061402 | MS.gene78686 | PPI |
| MS.gene78686 | MS.gene038979 | PPI |
| MS.gene78686 | MS.gene92476 | PPI |
| MS.gene78686 | MS.gene068947 | PPI |
| MS.gene78686 | MS.gene42745 | PPI |
| MS.gene78686 | MS.gene62500 | PPI |
| MS.gene78686 | MS.gene36106 | PPI |
| MS.gene78686 | MS.gene98420 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78686.t1 | MTR_5g075680 | 96.962 | 395 | 12 | 0 | 1 | 395 | 1 | 395 | 0.0 | 796 |
| MS.gene78686.t1 | MTR_5g075680 | 97.305 | 334 | 9 | 0 | 62 | 395 | 9 | 342 | 0.0 | 675 |
| MS.gene78686.t1 | MTR_3g062610 | 75.369 | 406 | 85 | 5 | 1 | 395 | 1 | 402 | 0.0 | 617 |
| MS.gene78686.t1 | MTR_5g075680 | 96.259 | 294 | 11 | 0 | 1 | 294 | 1 | 294 | 0.0 | 587 |
| MS.gene78686.t1 | MTR_5g075680 | 95.902 | 244 | 10 | 0 | 1 | 244 | 1 | 244 | 9.46e-174 | 484 |
| MS.gene78686.t1 | MTR_3g062610 | 72.459 | 305 | 69 | 5 | 1 | 294 | 1 | 301 | 8.81e-154 | 437 |
| MS.gene78686.t1 | MTR_8g046550 | 54.985 | 331 | 142 | 4 | 65 | 389 | 64 | 393 | 3.48e-120 | 354 |
| MS.gene78686.t1 | MTR_7g022890 | 56.098 | 328 | 139 | 3 | 65 | 387 | 16 | 343 | 2.09e-119 | 350 |
| MS.gene78686.t1 | MTR_7g022890 | 56.098 | 328 | 139 | 3 | 65 | 387 | 69 | 396 | 9.50e-119 | 350 |
| MS.gene78686.t1 | MTR_2g064405 | 53.179 | 346 | 150 | 5 | 53 | 387 | 46 | 390 | 5.45e-114 | 338 |
| MS.gene78686.t1 | MTR_2g064405 | 58.194 | 299 | 121 | 3 | 92 | 387 | 16 | 313 | 1.02e-111 | 330 |
| MS.gene78686.t1 | MTR_3g080090 | 50.559 | 358 | 159 | 6 | 44 | 390 | 49 | 399 | 3.01e-109 | 327 |
| MS.gene78686.t1 | MTR_3g081690 | 67.442 | 43 | 14 | 0 | 142 | 184 | 1 | 43 | 1.20e-12 | 68.9 |
| MS.gene78686.t1 | MTR_3g082050 | 67.442 | 43 | 14 | 0 | 142 | 184 | 1 | 43 | 1.55e-12 | 68.9 |
| MS.gene78686.t1 | MTR_3g082050 | 67.442 | 43 | 14 | 0 | 142 | 184 | 1 | 43 | 1.71e-12 | 68.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78686.t1 | AT3G58060 | 66.749 | 403 | 114 | 6 | 9 | 394 | 10 | 409 | 0.0 | 531 |
| MS.gene78686.t1 | AT3G58060 | 66.749 | 403 | 114 | 6 | 9 | 394 | 10 | 409 | 0.0 | 531 |
| MS.gene78686.t1 | AT1G79520 | 57.012 | 328 | 134 | 4 | 65 | 386 | 19 | 345 | 1.90e-118 | 348 |
| MS.gene78686.t1 | AT1G79520 | 57.012 | 328 | 134 | 4 | 65 | 386 | 19 | 345 | 1.90e-118 | 348 |
| MS.gene78686.t1 | AT1G79520 | 57.012 | 328 | 134 | 4 | 65 | 386 | 72 | 398 | 9.75e-118 | 348 |
| MS.gene78686.t1 | AT1G79520 | 57.012 | 328 | 134 | 4 | 65 | 386 | 84 | 410 | 1.29e-117 | 348 |
| MS.gene78686.t1 | AT1G16310 | 53.868 | 349 | 153 | 5 | 44 | 386 | 79 | 425 | 3.11e-115 | 343 |
| MS.gene78686.t1 | AT1G16310 | 58.725 | 298 | 120 | 3 | 92 | 387 | 17 | 313 | 2.60e-112 | 331 |
| MS.gene78686.t1 | AT2G39450 | 53.963 | 328 | 146 | 3 | 65 | 387 | 63 | 390 | 1.56e-99 | 301 |
Find 61 sgRNAs with CRISPR-Local
Find 176 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGATTCTCTGCTTGACTTCA+TGG | 0.203109 | 5.1:-58199556 | MS.gene78686:CDS |
| AAGAGTTCATATCATGATTC+TGG | 0.263433 | 5.1:+58201419 | None:intergenic |
| TCTAGATTTATGTGACAATT+AGG | 0.268110 | 5.1:-58199611 | MS.gene78686:intron |
| AAATCTCGCTACAGGCTTTC+AGG | 0.268717 | 5.1:-58199275 | MS.gene78686:intron |
| CATTGGTGAAGCTTGCTCTT+TGG | 0.286937 | 5.1:-58199153 | MS.gene78686:CDS |
| AATTATCTTTGCAGCTGTTA+TGG | 0.297100 | 5.1:-58199439 | MS.gene78686:CDS |
| AGGGTATTTGTACATATTTA+TGG | 0.304407 | 5.1:+58199494 | None:intergenic |
| ACTGTTCGCGCTTACTCATT+TGG | 0.318381 | 5.1:-58198177 | MS.gene78686:CDS |
| GGATTAGTTGCAGCTGTTCT+TGG | 0.320542 | 5.1:-58198594 | MS.gene78686:CDS |
| AAATTGGTCTGGTACTGTTA+TGG | 0.321993 | 5.1:-58198508 | MS.gene78686:CDS |
| CAATTTACACTATTTCAAAT+TGG | 0.325207 | 5.1:-58198524 | MS.gene78686:CDS |
| TGTCTTATGATCAACTAGTA+TGG | 0.327802 | 5.1:-58199201 | MS.gene78686:CDS |
| ACAAACGCTCGCTCAACTTC+TGG | 0.331579 | 5.1:+58197892 | None:intergenic |
| GACAATTAGGACTGGATCTA+TGG | 0.341105 | 5.1:-58199598 | MS.gene78686:CDS |
| GTTAGCTTCTGCAGAAGTTC+AGG | 0.343605 | 5.1:+58198240 | None:intergenic |
| GCAAGTAAAATAGCACCAAT+AGG | 0.355419 | 5.1:+58198546 | None:intergenic |
| TGATTCTGGTTGCACAATAA+TGG | 0.364596 | 5.1:+58201433 | None:intergenic |
| TGCATTCTCAACTTTCCAAT+AGG | 0.373794 | 5.1:+58199474 | None:intergenic |
| GTCAAAGAATGGACCTTATC+AGG | 0.379798 | 5.1:+58201361 | None:intergenic |
| CTCTATGTCTTCTATTACAA+TGG | 0.383414 | 5.1:+58199784 | None:intergenic |
| AATATGTACAAATACCCTAT+TGG | 0.393464 | 5.1:-58199489 | MS.gene78686:CDS |
| ACTAATTCAGGCTAACTATC+TGG | 0.395856 | 5.1:+58197814 | None:intergenic |
| TGCTACTCTAAAATCATTTG+AGG | 0.396619 | 5.1:-58199834 | MS.gene78686:CDS |
| CTTATCCAAGCTGCCTGATA+AGG | 0.399632 | 5.1:-58201374 | MS.gene78686:CDS |
| GCATTCTCAACTTTCCAATA+GGG | 0.402495 | 5.1:+58199475 | None:intergenic |
| AATGGAATCCGACATTACTA+TGG | 0.408123 | 5.1:+58199802 | None:intergenic |
| GGCTATTGCTGCTTCAACAT+TGG | 0.415508 | 5.1:-58199577 | MS.gene78686:CDS |
| TACACTATTTCAAATTGGTC+TGG | 0.417366 | 5.1:-58198519 | MS.gene78686:CDS |
| CTACTAAGAACTGAATGTTC+TGG | 0.420326 | 5.1:+58197841 | None:intergenic |
| TACTGGTGGATTGACCCTAT+TGG | 0.428785 | 5.1:-58198561 | MS.gene78686:CDS |
| TCTCTGCTTGACTTCATGGC+TGG | 0.433184 | 5.1:-58199552 | MS.gene78686:CDS |
| TCATGGCTGGTGGCATACTT+TGG | 0.433940 | 5.1:-58199539 | MS.gene78686:CDS |
| CAAGTAAAATAGCACCAATA+GGG | 0.443125 | 5.1:+58198547 | None:intergenic |
| TTAAAAGAAGCACATATCAT+TGG | 0.458006 | 5.1:-58197946 | MS.gene78686:CDS |
| TATTATGATATTTGCAACAT+TGG | 0.463601 | 5.1:-58199170 | MS.gene78686:CDS |
| AATAGAAGACATAGAGAAGC+AGG | 0.483693 | 5.1:-58199777 | MS.gene78686:CDS |
| GCAAAGATAATTATTCCTAC+TGG | 0.493299 | 5.1:+58199450 | None:intergenic |
| TGGAGGGAAATTCAAGTTCA+AGG | 0.495857 | 5.1:-58201456 | MS.gene78686:CDS |
| CAGTGTGGAGGGTCAAAGAA+TGG | 0.500698 | 5.1:+58201350 | None:intergenic |
| CTGCTTGACTTCATGGCTGG+TGG | 0.529766 | 5.1:-58199549 | MS.gene78686:CDS |
| AAAGGAAGAGTCAGTGTGGA+GGG | 0.543252 | 5.1:+58201339 | None:intergenic |
| ATGGACCTTATCAGGCAGCT+TGG | 0.545275 | 5.1:+58201369 | None:intergenic |
| TCTTATGCAGTTTCACTAGT+GGG | 0.546741 | 5.1:-58198276 | MS.gene78686:intron |
| GATGTTGTAACAAATGTGGT+TGG | 0.560025 | 5.1:-58198615 | MS.gene78686:CDS |
| CTTGTAGATGTAGAGAAATG+AGG | 0.563048 | 5.1:+58201307 | None:intergenic |
| TTCTTATGCAGTTTCACTAG+TGG | 0.563653 | 5.1:-58198277 | MS.gene78686:intron |
| GAAATGAGGATCAAAGTCAA+AGG | 0.565598 | 5.1:+58201321 | None:intergenic |
| ATTTATGTGACAATTAGGAC+TGG | 0.572892 | 5.1:-58199606 | MS.gene78686:CDS |
| GCAGCTGTTATGGCAACACT+TGG | 0.573374 | 5.1:-58199429 | MS.gene78686:intron |
| GGTACTGTTATGGAAAATGC+AGG | 0.577276 | 5.1:-58198498 | MS.gene78686:intron |
| AGTTGACTCCATAGTAATGT+CGG | 0.594687 | 5.1:-58199810 | MS.gene78686:CDS |
| AGGCCACCATACATCTGCAT+AGG | 0.602194 | 5.1:+58199093 | None:intergenic |
| CTGTAGCAGTGATCAATGGA+GGG | 0.605241 | 5.1:-58201472 | None:intergenic |
| CAAAGGAAGAGTCAGTGTGG+AGG | 0.614163 | 5.1:+58201338 | None:intergenic |
| CTTTGATGTTGTAACAAATG+TGG | 0.615388 | 5.1:-58198619 | MS.gene78686:CDS |
| AGCTTCTGCAGAAGTTCAGG+AGG | 0.615943 | 5.1:+58198243 | None:intergenic |
| TGGAGTTCTATACTTCGTAG+AGG | 0.633517 | 5.1:-58198157 | MS.gene78686:intron |
| ACATCTACAAGCTTAAGCAA+AGG | 0.634230 | 5.1:-58201295 | MS.gene78686:intron |
| AAGTTGAGAATGCAGCCAGT+AGG | 0.643411 | 5.1:-58199465 | MS.gene78686:CDS |
| GGTTGACATTGAACTACCAG+AGG | 0.650826 | 5.1:-58197977 | MS.gene78686:CDS |
| AGTCAAAGGAAGAGTCAGTG+TGG | 0.684363 | 5.1:+58201335 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATCATAATTTTTTTTTCA+TGG | + | chr5.1:58198296-58198315 | None:intergenic | 10.0% |
| !! | AAAAATTGTATTGAATATTG+TGG | - | chr5.1:58198367-58198386 | MS.gene78686:intron | 15.0% |
| !! | ACAAAACAATTAAATAAAGA+TGG | + | chr5.1:58200832-58200851 | None:intergenic | 15.0% |
| !! | ACAATCAAAAAAAATTAACA+GGG | + | chr5.1:58198478-58198497 | None:intergenic | 15.0% |
| !! | TAAAACAATTAAACTAACAA+TGG | - | chr5.1:58198718-58198737 | MS.gene78686:intron | 15.0% |
| !! | TACAATCAAAAAAAATTAAC+AGG | + | chr5.1:58198479-58198498 | None:intergenic | 15.0% |
| !! | TATAAGTTAAAAACAACTAA+TGG | + | chr5.1:58200339-58200358 | None:intergenic | 15.0% |
| !! | TATTGAAATAACTTATACAT+AGG | - | chr5.1:58200552-58200571 | MS.gene78686:intron | 15.0% |
| !!! | TATGTTTTACTTCATAATTT+TGG | - | chr5.1:58201267-58201286 | MS.gene78686:intron | 15.0% |
| !!! | TTTTATGTCTCAAAATTTTT+AGG | - | chr5.1:58199398-58199417 | MS.gene78686:intron | 15.0% |
| !! | AAACAATTAAATAAAGATGG+AGG | + | chr5.1:58200829-58200848 | None:intergenic | 20.0% |
| !! | AAAGGAATATAAACATCTTA+AGG | + | chr5.1:58199601-58199620 | None:intergenic | 20.0% |
| !! | AACAATTAAATAAAGATGGA+GGG | + | chr5.1:58200828-58200847 | None:intergenic | 20.0% |
| !! | AACTTATATTCATAATCTCT+AGG | - | chr5.1:58200351-58200370 | MS.gene78686:intron | 20.0% |
| !! | AAGTAATAGATAAAGAGATT+TGG | + | chr5.1:58199884-58199903 | None:intergenic | 20.0% |
| !! | AGTAAATATTGGATCAAAAT+AGG | + | chr5.1:58199305-58199324 | None:intergenic | 20.0% |
| !! | ATATGACGATTATGATTAAT+TGG | + | chr5.1:58199968-58199987 | None:intergenic | 20.0% |
| !! | CAATTTACACTATTTCAAAT+TGG | - | chr5.1:58200758-58200777 | MS.gene78686:intron | 20.0% |
| !! | GTAAATATTGGATCAAAATA+GGG | + | chr5.1:58199304-58199323 | None:intergenic | 20.0% |
| !! | TATGTTTCATACATGATTAA+AGG | + | chr5.1:58198026-58198045 | None:intergenic | 20.0% |
| !! | TATTATGATATTTGCAACAT+TGG | - | chr5.1:58200112-58200131 | MS.gene78686:intron | 20.0% |
| !! | TCGAAAATGACAATTAAAAA+CGG | + | chr5.1:58200901-58200920 | None:intergenic | 20.0% |
| !!! | TACTAAAAGTGATTTAAGTT+TGG | + | chr5.1:58201158-58201177 | None:intergenic | 20.0% |
| ! | AAGATCATTGAATTCTTCTA+GGG | + | chr5.1:58198602-58198621 | None:intergenic | 25.0% |
| ! | AATATGTACAAATACCCTAT+TGG | - | chr5.1:58199793-58199812 | MS.gene78686:CDS | 25.0% |
| ! | ATAAACAAGTGAGTCTATTT+GGG | - | chr5.1:58200401-58200420 | MS.gene78686:intron | 25.0% |
| ! | ATAAGTGGAGTAGTAAATAT+TGG | + | chr5.1:58199316-58199335 | None:intergenic | 25.0% |
| ! | ATATTCAATCTGATTACTTG+AGG | - | chr5.1:58198498-58198517 | MS.gene78686:intron | 25.0% |
| ! | CGAAGAAATAATAGTTAATG+CGG | + | chr5.1:58200933-58200952 | None:intergenic | 25.0% |
| ! | TAAGATCATTGAATTCTTCT+AGG | + | chr5.1:58198603-58198622 | None:intergenic | 25.0% |
| ! | TACTATTAAAGCAGTATAAG+TGG | + | chr5.1:58199331-58199350 | None:intergenic | 25.0% |
| ! | TCTAGATTTATGTGACAATT+AGG | - | chr5.1:58199671-58199690 | MS.gene78686:intron | 25.0% |
| ! | TCTTGTTCATGAAGTTTATT+TGG | - | chr5.1:58198239-58198258 | MS.gene78686:CDS | 25.0% |
| ! | TTCAATTACTCTATATCTCA+AGG | + | chr5.1:58198683-58198702 | None:intergenic | 25.0% |
| ! | TTGAGATATAGAGTAATTGA+AGG | - | chr5.1:58198682-58198701 | MS.gene78686:intron | 25.0% |
| !! | AAAAAAATTAACAGGGTACT+TGG | + | chr5.1:58198471-58198490 | None:intergenic | 25.0% |
| !! | AAGTTAGTATTTGTTAGAGA+CGG | + | chr5.1:58200631-58200650 | None:intergenic | 25.0% |
| !! | AATGATATGTGCTTCTTTTA+AGG | + | chr5.1:58201337-58201356 | None:intergenic | 25.0% |
| !! | AGGGTATTTGTACATATTTA+TGG | + | chr5.1:58199791-58199810 | None:intergenic | 25.0% |
| !! | ATGATATGTGCTTCTTTTAA+GGG | + | chr5.1:58201336-58201355 | None:intergenic | 25.0% |
| !! | GATCATTTTACAATTCTTGA+GGG | - | chr5.1:58198154-58198173 | MS.gene78686:intron | 25.0% |
| !! | TGATCATTTTACAATTCTTG+AGG | - | chr5.1:58198153-58198172 | MS.gene78686:intron | 25.0% |
| !! | TTAAAAGAAGCACATATCAT+TGG | - | chr5.1:58201336-58201355 | MS.gene78686:CDS | 25.0% |
| !! | TTTTATTCAAAATCTCCTGA+AGG | + | chr5.1:58199038-58199057 | None:intergenic | 25.0% |
| !!! | TAGTCTTGTAACAAAGTATT+CGG | + | chr5.1:58198188-58198207 | None:intergenic | 25.0% |
| !!! | TTCTTGGTGATAAATTTTAC+TGG | - | chr5.1:58200704-58200723 | MS.gene78686:intron | 25.0% |
| !!! | TTTTGGTTCAAATGTAAAAC+AGG | - | chr5.1:58201284-58201303 | MS.gene78686:intron | 25.0% |
| AACAATATCACTAAGGTGTA+TGG | + | chr5.1:58198816-58198835 | None:intergenic | 30.0% | |
| AACACAAATCACAGTGTTTA+AGG | - | chr5.1:58199368-58199387 | MS.gene78686:intron | 30.0% | |
| AACTAACAATGGATGAAATG+AGG | - | chr5.1:58198729-58198748 | MS.gene78686:intron | 30.0% | |
| AAGAGTTCATATCATGATTC+TGG | + | chr5.1:58197866-58197885 | None:intergenic | 30.0% | |
| AAGCAACTTATCACAAGAAA+AGG | + | chr5.1:58200212-58200231 | None:intergenic | 30.0% | |
| AATTATCTTTGCAGCTGTTA+TGG | - | chr5.1:58199843-58199862 | MS.gene78686:CDS | 30.0% | |
| ATTTATGTGACAATTAGGAC+TGG | - | chr5.1:58199676-58199695 | MS.gene78686:intron | 30.0% | |
| CAAGTAAAATAGCACCAATA+GGG | + | chr5.1:58200738-58200757 | None:intergenic | 30.0% | |
| CATAAACAAGTGAGTCTATT+TGG | - | chr5.1:58200400-58200419 | MS.gene78686:intron | 30.0% | |
| CCATATCATACATAAAATCG+AGG | + | chr5.1:58201210-58201229 | None:intergenic | 30.0% | |
| CTCTATGTCTTCTATTACAA+TGG | + | chr5.1:58199501-58199520 | None:intergenic | 30.0% | |
| CTTATATTCATCATCTCTCT+AGG | - | chr5.1:58200470-58200489 | MS.gene78686:intron | 30.0% | |
| CTTTGATGTTGTAACAAATG+TGG | - | chr5.1:58200663-58200682 | MS.gene78686:intron | 30.0% | |
| GCAAAGATAATTATTCCTAC+TGG | + | chr5.1:58199835-58199854 | None:intergenic | 30.0% | |
| TACACTATTTCAAATTGGTC+TGG | - | chr5.1:58200763-58200782 | MS.gene78686:intron | 30.0% | |
| TAGACTTCACTTTAAATACG+TGG | - | chr5.1:58200957-58200976 | MS.gene78686:intron | 30.0% | |
| TGTCTTATGATCAACTAGTA+TGG | - | chr5.1:58200081-58200100 | MS.gene78686:intron | 30.0% | |
| ! | CCTCGATTTTATGTATGATA+TGG | - | chr5.1:58201207-58201226 | MS.gene78686:intron | 30.0% |
| ! | GATTCTTTACACGGATTAAT+TGG | + | chr5.1:58199936-58199955 | None:intergenic | 30.0% |
| ! | TCATAAGACATTTTCTCAGA+AGG | + | chr5.1:58200071-58200090 | None:intergenic | 30.0% |
| ! | TCTAACAAATACTAACTTGC+AGG | - | chr5.1:58200633-58200652 | MS.gene78686:intron | 30.0% |
| ! | TTTTGAATAAAAGCTCGTTG+AGG | - | chr5.1:58199046-58199065 | MS.gene78686:intron | 30.0% |
| !! | CTATGCAAATGCAGTTTTAT+TGG | - | chr5.1:58199559-58199578 | MS.gene78686:CDS | 30.0% |
| !! | TGCTACTCTAAAATCATTTG+AGG | - | chr5.1:58199448-58199467 | MS.gene78686:CDS | 30.0% |
| !! | TTGGTGATAAATTTTACTGG+TGG | - | chr5.1:58200707-58200726 | MS.gene78686:intron | 30.0% |
| !!! | TGCAGTTTTATTGGCATTAA+AGG | - | chr5.1:58199568-58199587 | MS.gene78686:CDS | 30.0% |
| AATAGAAGACATAGAGAAGC+AGG | - | chr5.1:58199505-58199524 | MS.gene78686:CDS | 35.0% | |
| AATGGAATCCGACATTACTA+TGG | + | chr5.1:58199483-58199502 | None:intergenic | 35.0% | |
| ACATAGGCACTTATGTGATA+AGG | - | chr5.1:58200568-58200587 | MS.gene78686:intron | 35.0% | |
| ACATCTACAAGCTTAAGCAA+AGG | - | chr5.1:58197987-58198006 | MS.gene78686:intron | 35.0% | |
| AGAGGATGCTGAATTTGAAA+AGG | - | chr5.1:58198404-58198423 | MS.gene78686:intron | 35.0% | |
| AGCTAAGCAAGTATGTTCAA+AGG | + | chr5.1:58199619-58199638 | None:intergenic | 35.0% | |
| ATCTTAACAAATCTCGCTAC+AGG | - | chr5.1:58199999-58200018 | MS.gene78686:intron | 35.0% | |
| CACACATGTATCACTCTTAT+GGG | + | chr5.1:58199151-58199170 | None:intergenic | 35.0% | |
| CAGCGTAAAGATTCTTTACA+CGG | + | chr5.1:58199945-58199964 | None:intergenic | 35.0% | |
| CATAAACACGTGAGACTATT+TGG | - | chr5.1:58200283-58200302 | MS.gene78686:intron | 35.0% | |
| CATATATAGTAGAGTCCTTC+AGG | - | chr5.1:58199020-58199039 | MS.gene78686:intron | 35.0% | |
| CGGATCAAACAATATCACTA+AGG | + | chr5.1:58198823-58198842 | None:intergenic | 35.0% | |
| CTACTAAGAACTGAATGTTC+TGG | + | chr5.1:58201444-58201463 | None:intergenic | 35.0% | |
| CTTCATGAACAAGATACTTG+AGG | + | chr5.1:58198233-58198252 | None:intergenic | 35.0% | |
| CTTGTAGATGTAGAGAAATG+AGG | + | chr5.1:58197978-58197997 | None:intergenic | 35.0% | |
| GAAATGAGGATCAAAGTCAA+AGG | + | chr5.1:58197964-58197983 | None:intergenic | 35.0% | |
| GAAGGACTCTACTATATATG+AGG | + | chr5.1:58199020-58199039 | None:intergenic | 35.0% | |
| GAGGATGCTGAATTTGAAAA+GGG | - | chr5.1:58198405-58198424 | MS.gene78686:intron | 35.0% | |
| GATATTGTTTGATCCGAGTT+GGG | - | chr5.1:58198827-58198846 | MS.gene78686:intron | 35.0% | |
| GATGTTGTAACAAATGTGGT+TGG | - | chr5.1:58200667-58200686 | MS.gene78686:intron | 35.0% | |
| GCAAGTAAAATAGCACCAAT+AGG | + | chr5.1:58200739-58200758 | None:intergenic | 35.0% | |
| GCATTCTCAACTTTCCAATA+GGG | + | chr5.1:58199810-58199829 | None:intergenic | 35.0% | |
| GTGGTAAGAATAGAACATAG+AGG | - | chr5.1:58198386-58198405 | MS.gene78686:intron | 35.0% | |
| GTTGTGTACTTTCATGTACT+CGG | - | chr5.1:58198917-58198936 | MS.gene78686:intron | 35.0% | |
| TCACACATGTATCACTCTTA+TGG | + | chr5.1:58199152-58199171 | None:intergenic | 35.0% | |
| TCTTATGCAGTTTCACTAGT+GGG | - | chr5.1:58201006-58201025 | MS.gene78686:intron | 35.0% | |
| TGATATTGTTTGATCCGAGT+TGG | - | chr5.1:58198826-58198845 | MS.gene78686:intron | 35.0% | |
| TGCAATGGAAGATAACCAAT+GGG | - | chr5.1:58198878-58198897 | MS.gene78686:intron | 35.0% | |
| TGCATTCTCAACTTTCCAAT+AGG | + | chr5.1:58199811-58199830 | None:intergenic | 35.0% | |
| TTCTTATGCAGTTTCACTAG+TGG | - | chr5.1:58201005-58201024 | MS.gene78686:intron | 35.0% | |
| ! | AAATTGGTCTGGTACTGTTA+TGG | - | chr5.1:58200774-58200793 | MS.gene78686:intron | 35.0% |
| ! | AGTTGACTCCATAGTAATGT+CGG | - | chr5.1:58199472-58199491 | MS.gene78686:CDS | 35.0% |
| ! | ATCATTGAATTCTTCTAGGG+AGG | + | chr5.1:58198599-58198618 | None:intergenic | 35.0% |
| ! | TCTTTACACGGATTAATTGG+CGG | + | chr5.1:58199933-58199952 | None:intergenic | 35.0% |
| ! | TGATTCTGGTTGCACAATAA+TGG | + | chr5.1:58197852-58197871 | None:intergenic | 35.0% |
| !! | TCTTTTAAGGGTAAATCCTC+TGG | + | chr5.1:58201324-58201343 | None:intergenic | 35.0% |
| !! | TGGTTTTACTGCAAAAACTC+AGG | - | chr5.1:58200149-58200168 | MS.gene78686:intron | 35.0% |
| AATGGATGAAATGAGGCAAG+TGG | - | chr5.1:58198736-58198755 | MS.gene78686:intron | 40.0% | |
| AGTCTATTTGGGAGAGCTTA+TGG | - | chr5.1:58200412-58200431 | MS.gene78686:intron | 40.0% | |
| CTCAAATCAGCCAGAAAATG+AGG | - | chr5.1:58198943-58198962 | MS.gene78686:intron | 40.0% | |
| GACAATTAGGACTGGATCTA+TGG | - | chr5.1:58199684-58199703 | MS.gene78686:intron | 40.0% | |
| GAGTGATACATGTGTGATGT+TGG | - | chr5.1:58199155-58199174 | MS.gene78686:CDS | 40.0% | |
| GGTACTGTTATGGAAAATGC+AGG | - | chr5.1:58200784-58200803 | MS.gene78686:intron | 40.0% | |
| GTCAAAGAATGGACCTTATC+AGG | + | chr5.1:58197924-58197943 | None:intergenic | 40.0% | |
| GTGCAATGGAAGATAACCAA+TGG | - | chr5.1:58198877-58198896 | MS.gene78686:intron | 40.0% | |
| TATGAGGATCTCTTACACTC+AGG | + | chr5.1:58199004-58199023 | None:intergenic | 40.0% | |
| TGGAGTTCTATACTTCGTAG+AGG | - | chr5.1:58201125-58201144 | MS.gene78686:intron | 40.0% | |
| TTCTTGCCTATGCAGATGTA+TGG | - | chr5.1:58200183-58200202 | MS.gene78686:intron | 40.0% | |
| ! | TGGAGGGAAATTCAAGTTCA+AGG | - | chr5.1:58197826-58197845 | MS.gene78686:CDS | 40.0% |
| !! | TCCTCGCAAGTATTTCTAGA+AGG | - | chr5.1:58198790-58198809 | MS.gene78686:intron | 40.0% |
| AAAGGAAGAGTCAGTGTGGA+GGG | + | chr5.1:58197946-58197965 | None:intergenic | 45.0% | |
| AAATCTCGCTACAGGCTTTC+AGG | - | chr5.1:58200007-58200026 | MS.gene78686:intron | 45.0% | |
| AAGTTGAGAATGCAGCCAGT+AGG | - | chr5.1:58199817-58199836 | MS.gene78686:CDS | 45.0% | |
| ACTGTTCGCGCTTACTCATT+TGG | - | chr5.1:58201105-58201124 | MS.gene78686:intron | 45.0% | |
| AGTCAAAGGAAGAGTCAGTG+TGG | + | chr5.1:58197950-58197969 | None:intergenic | 45.0% | |
| ATCCTTTGTGATGAGCAGAC+AGG | - | chr5.1:58199098-58199117 | MS.gene78686:intron | 45.0% | |
| ATGTTGGACCTTAGACGAAG+AGG | - | chr5.1:58199171-58199190 | MS.gene78686:CDS | 45.0% | |
| CAGAAAATGAGGTGAGTGTG+AGG | - | chr5.1:58198954-58198973 | MS.gene78686:intron | 45.0% | |
| CTTATCCAAGCTGCCTGATA+AGG | - | chr5.1:58197908-58197927 | MS.gene78686:CDS | 45.0% | |
| GACGGCAACACAACTTATGT+CGG | + | chr5.1:58200613-58200632 | None:intergenic | 45.0% | |
| GATCTTAGTCACGTATCGCT+CGG | - | chr5.1:58198616-58198635 | MS.gene78686:CDS | 45.0% | |
| GGATTCTCTGCTTGACTTCA+TGG | - | chr5.1:58199726-58199745 | MS.gene78686:CDS | 45.0% | |
| GGTTGACATTGAACTACCAG+AGG | - | chr5.1:58201305-58201324 | MS.gene78686:CDS | 45.0% | |
| GTGAGTGTGAGGTAGTAAAG+TGG | - | chr5.1:58198965-58198984 | MS.gene78686:intron | 45.0% | |
| TCCTTTGTGATGAGCAGACA+GGG | - | chr5.1:58199099-58199118 | MS.gene78686:intron | 45.0% | |
| TGGGAACAATCACCATGTGA+TGG | + | chr5.1:58199132-58199151 | None:intergenic | 45.0% | |
| TTGCCTATGCAGATGTATGG+TGG | - | chr5.1:58200186-58200205 | MS.gene78686:intron | 45.0% | |
| ! | CATTGGTGAAGCTTGCTCTT+TGG | - | chr5.1:58200129-58200148 | MS.gene78686:intron | 45.0% |
| ! | CTCACACTCACCTCATTTTC+TGG | + | chr5.1:58198956-58198975 | None:intergenic | 45.0% |
| ! | CTGGTGATGTTGAAGTGCAA+TGG | - | chr5.1:58198863-58198882 | MS.gene78686:intron | 45.0% |
| ! | GCCTTCTAGAAATACTTGCG+AGG | + | chr5.1:58198794-58198813 | None:intergenic | 45.0% |
| ! | GGCTATTGCTGCTTCAACAT+TGG | - | chr5.1:58199705-58199724 | MS.gene78686:intron | 45.0% |
| ! | GTTAGCTTCTGCAGAAGTTC+AGG | + | chr5.1:58201045-58201064 | None:intergenic | 45.0% |
| ! | TACTTGAGGTGCTAGCTCAA+CGG | + | chr5.1:58198219-58198238 | None:intergenic | 45.0% |
| !! | GGATTAGTTGCAGCTGTTCT+TGG | - | chr5.1:58200688-58200707 | MS.gene78686:intron | 45.0% |
| !! | TACTGGTGGATTGACCCTAT+TGG | - | chr5.1:58200721-58200740 | MS.gene78686:intron | 45.0% |
| !!! | ATTTTTAATTTTTTTAAACA+TGG | + | chr5.1:58198353-58198372 | None:intergenic | 5.0% |
| !!! | TTTTTTTTAATTTATTAAAG+TGG | - | chr5.1:58198124-58198143 | MS.gene78686:intron | 5.0% |
| AATGGGAGCTCTCAGACAAG+GGG | - | chr5.1:58198895-58198914 | MS.gene78686:intron | 50.0% | |
| ACAAACGCTCGCTCAACTTC+TGG | + | chr5.1:58201393-58201412 | None:intergenic | 50.0% | |
| ACCCTGTCTGCTCATCACAA+AGG | + | chr5.1:58199103-58199122 | None:intergenic | 50.0% | |
| AGCTTCTGCAGAAGTTCAGG+AGG | + | chr5.1:58201042-58201061 | None:intergenic | 50.0% | |
| AGGCCACCATACATCTGCAT+AGG | + | chr5.1:58200192-58200211 | None:intergenic | 50.0% | |
| ATGGACCTTATCAGGCAGCT+TGG | + | chr5.1:58197916-58197935 | None:intergenic | 50.0% | |
| CAAAGGAAGAGTCAGTGTGG+AGG | + | chr5.1:58197947-58197966 | None:intergenic | 50.0% | |
| CAATGGGAGCTCTCAGACAA+GGG | - | chr5.1:58198894-58198913 | MS.gene78686:intron | 50.0% | |
| CAGGGTTTGTGTCCATCACA+TGG | - | chr5.1:58199117-58199136 | MS.gene78686:CDS | 50.0% | |
| CAGTGTGGAGGGTCAAAGAA+TGG | + | chr5.1:58197935-58197954 | None:intergenic | 50.0% | |
| GCAGCTGTTATGGCAACACT+TGG | - | chr5.1:58199853-58199872 | MS.gene78686:CDS | 50.0% | |
| TACCTGGACCTCTTCGTCTA+AGG | + | chr5.1:58199182-58199201 | None:intergenic | 50.0% | |
| TAGACGAAGAGGTCCAGGTA+AGG | - | chr5.1:58199182-58199201 | MS.gene78686:CDS | 50.0% | |
| TCAACAATCTCCGCCTTACC+TGG | + | chr5.1:58199198-58199217 | None:intergenic | 50.0% | |
| TCATGGCTGGTGGCATACTT+TGG | - | chr5.1:58199743-58199762 | MS.gene78686:CDS | 50.0% | |
| TCTCTGCTTGACTTCATGGC+TGG | - | chr5.1:58199730-58199749 | MS.gene78686:CDS | 50.0% | |
| ACGAAGAGGTCCAGGTAAGG+CGG | - | chr5.1:58199185-58199204 | MS.gene78686:CDS | 55.0% | |
| ACGTTGAGTACTCGCGTGAG+TGG | - | chr5.1:58199069-58199088 | MS.gene78686:intron | 55.0% | |
| CCAATGGGAGCTCTCAGACA+AGG | - | chr5.1:58198893-58198912 | MS.gene78686:intron | 55.0% | |
| CCATCATTCGCGACCCAACT+CGG | + | chr5.1:58198843-58198862 | None:intergenic | 55.0% | |
| CCTTGTCTGAGAGCTCCCAT+TGG | + | chr5.1:58198896-58198915 | None:intergenic | 55.0% | |
| CTGCTTGACTTCATGGCTGG+TGG | - | chr5.1:58199733-58199752 | MS.gene78686:CDS | 55.0% | |
| GACCTTAGACGAAGAGGTCC+AGG | - | chr5.1:58199177-58199196 | MS.gene78686:CDS | 55.0% | |
| GTTGGGTCGCGAATGATGGC+TGG | - | chr5.1:58198844-58198863 | MS.gene78686:intron | 60.0% | |
| ! | CCGAGTTGGGTCGCGAATGA+TGG | - | chr5.1:58198840-58198859 | MS.gene78686:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 58197825 | 58201479 | 58197825 | ID=MS.gene78686 |
| chr5.1 | mRNA | 58197825 | 58201479 | 58197825 | ID=MS.gene78686.t1;Parent=MS.gene78686 |
| chr5.1 | exon | 58201296 | 58201479 | 58201296 | ID=MS.gene78686.t1.exon1;Parent=MS.gene78686.t1 |
| chr5.1 | CDS | 58201296 | 58201479 | 58201296 | ID=cds.MS.gene78686.t1;Parent=MS.gene78686.t1 |
| chr5.1 | exon | 58199715 | 58199884 | 58199715 | ID=MS.gene78686.t1.exon2;Parent=MS.gene78686.t1 |
| chr5.1 | CDS | 58199715 | 58199884 | 58199715 | ID=cds.MS.gene78686.t1;Parent=MS.gene78686.t1 |
| chr5.1 | exon | 58199430 | 58199628 | 58199430 | ID=MS.gene78686.t1.exon3;Parent=MS.gene78686.t1 |
| chr5.1 | CDS | 58199430 | 58199628 | 58199430 | ID=cds.MS.gene78686.t1;Parent=MS.gene78686.t1 |
| chr5.1 | exon | 58199105 | 58199283 | 58199105 | ID=MS.gene78686.t1.exon4;Parent=MS.gene78686.t1 |
| chr5.1 | CDS | 58199105 | 58199283 | 58199105 | ID=cds.MS.gene78686.t1;Parent=MS.gene78686.t1 |
| chr5.1 | exon | 58198499 | 58198649 | 58198499 | ID=MS.gene78686.t1.exon5;Parent=MS.gene78686.t1 |
| chr5.1 | CDS | 58198499 | 58198649 | 58198499 | ID=cds.MS.gene78686.t1;Parent=MS.gene78686.t1 |
| chr5.1 | exon | 58198158 | 58198288 | 58198158 | ID=MS.gene78686.t1.exon6;Parent=MS.gene78686.t1 |
| chr5.1 | CDS | 58198158 | 58198288 | 58198158 | ID=cds.MS.gene78686.t1;Parent=MS.gene78686.t1 |
| chr5.1 | exon | 58197825 | 58197998 | 58197825 | ID=MS.gene78686.t1.exon7;Parent=MS.gene78686.t1 |
| chr5.1 | CDS | 58197825 | 58197998 | 58197825 | ID=cds.MS.gene78686.t1;Parent=MS.gene78686.t1 |
| Gene Sequence |
| Protein sequence |
