AlfalfaGEDB | MS.gene98420

M. sativa cultivar XinJiangDaYe / MS.gene98420

KEGG: -
GO: GO:0003674 GO:0005215 GO:0005575 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0015075 GO:0016021 GO:0022857 GO:0031224 GO:0051179 GO:0051234 GO:0055085 GO:0110165
PFAM: PF01545.24 PF16916.8

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene98420.t1	XP_003621788.1	99	400	4	0	1	400	1	400	1.00E-222	782.3

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene98420.t1	O80632	81.8	395	70	1	5	399	1	393	6.3e-184	644.8

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene98420.t1	G7KVN9	99.0	400	4	0	1	400	1	400	7.6e-223	782.3

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049396	MS.gene98420	0.822503	2.29E-53	-1.69E-46
MS.gene050323	MS.gene98420	0.80063	1.32E-48	-1.69E-46
MS.gene050380	MS.gene98420	-0.805158	1.53E-49	-1.69E-46
MS.gene050502	MS.gene98420	0.846457	2.15E-59	-1.69E-46
MS.gene050868	MS.gene98420	0.807157	5.80E-50	-1.69E-46
MS.gene050871	MS.gene98420	0.810379	1.19E-50	-1.69E-46
MS.gene051509	MS.gene98420	0.821134	4.74E-53	-1.69E-46
MS.gene052164	MS.gene98420	0.8072	5.68E-50	-1.69E-46
MS.gene053436	MS.gene98420	0.820833	5.56E-53	-1.69E-46
MS.gene053574	MS.gene98420	0.812607	3.89E-51	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene045727	MS.gene98420	PPI
MS.gene049605	MS.gene98420	PPI
MS.gene05112	MS.gene98420	PPI
MS.gene53865	MS.gene98420	PPI
MS.gene62500	MS.gene98420	PPI
MS.gene78686	MS.gene98420	PPI
MS.gene98420	MS.gene069718	PPI
MS.gene98420	MS.gene038979	PPI
MS.gene98420	MS.gene36106	PPI
MS.gene98420	MS.gene068947	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene98420.t1	MTR_7g022890	99.000	400	4	0	1	400	1	400	0.0	828
MS.gene98420.t1	MTR_7g022890	99.115	339	3	0	62	400	9	347	0.0	701
MS.gene98420.t1	MTR_8g046550	60.733	382	140	5	21	395	12	390	4.59e-160	456
MS.gene98420.t1	MTR_2g064405	62.400	375	133	5	25	395	19	389	8.18e-160	455
MS.gene98420.t1	MTR_2g064405	66.773	313	102	2	84	395	1	312	5.42e-147	419
MS.gene98420.t1	MTR_3g080090	57.487	374	145	4	29	397	33	397	5.94e-145	417
MS.gene98420.t1	MTR_3g062610	57.012	328	136	2	69	396	72	394	1.31e-129	379
MS.gene98420.t1	MTR_5g075680	56.402	328	138	3	69	396	12	334	3.51e-126	368
MS.gene98420.t1	MTR_5g075680	56.402	328	138	3	69	396	65	387	6.28e-126	369
MS.gene98420.t1	MTR_3g062610	49.612	258	120	3	69	326	72	319	6.61e-83	257

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene98420.t1	AT2G39450	81.566	396	71	1	5	400	1	394	0.0	611
MS.gene98420.t1	AT1G16310	59.898	394	138	5	13	395	41	425	1.93e-164	468
MS.gene98420.t1	AT1G79520	62.368	380	129	4	24	395	25	398	4.66e-163	464
MS.gene98420.t1	AT1G79520	60.982	387	135	5	24	395	25	410	1.25e-162	463
MS.gene98420.t1	AT1G79520	66.766	334	109	2	63	395	13	345	3.31e-162	459
MS.gene98420.t1	AT1G79520	66.766	334	109	2	63	395	13	345	3.31e-162	459
MS.gene98420.t1	AT1G16310	66.773	313	102	2	84	395	1	312	8.29e-151	429
MS.gene98420.t1	AT3G58060	53.693	352	158	3	50	396	51	402	1.31e-126	371
MS.gene98420.t1	AT3G58060	53.693	352	158	3	50	396	51	402	1.31e-126	371

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Find 93 sgRNAs with CRISPR-Local

Find 322 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCTTTGACATTCCGGGA+AGG	0.650213	7.4:-79050879	None:intergenic
AAAGAAGCGGATGCAACCAT+TGG	0.577177	7.4:+79051484	MS.gene98420:CDS
AAATTGTGTGCAGGGAATTC+TGG	0.316840	7.4:+79051606	MS.gene98420:intron
AAGACACATTGACACTGTTC+GGG	0.476544	7.4:+79053748	MS.gene98420:CDS
AAGACACCTAAACCCTCTTC+TGG	0.415856	7.4:+79048911	MS.gene98420:CDS
AAGGAAACCACGCTCTGCTA+AGG	0.531828	7.4:-79050860	None:intergenic
AAGTGGATGCAATGATGGCA+AGG	0.572995	7.4:-79051370	None:intergenic
AATAGAAACCTTTGACATTC+CGG	0.314411	7.4:-79050884	None:intergenic
AATATCGAACATAGCTAACA+TGG	0.635618	7.4:+79051304	MS.gene98420:CDS
AATCCGTATCAGTACCCTAT+TGG	0.365036	7.4:+79051461	MS.gene98420:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGTTCAAAATTGTGTGCA+GGG	+	chr7.4:79051598-79051617	MS.gene98420:intron	30.0%
AAATCCCTCTAATATTGAAC+AGG	+	chr7.4:79052777-79052796	MS.gene98420:intron	30.0%
AAGAAGAAATCTCTCATTAC+AGG	+	chr7.4:79053229-79053248	MS.gene98420:intron	30.0%
AATAGAAACCTTTGACATTC+CGG	-	chr7.4:79050887-79050906	None:intergenic	30.0%
AATATCGAACATAGCTAACA+TGG	+	chr7.4:79051304-79051323	MS.gene98420:CDS	30.0%
AATCCCTCTAATATTGAACA+GGG	+	chr7.4:79052778-79052797	MS.gene98420:intron	30.0%
AATCTTAGCAGTCAAGAAAA+TGG	-	chr7.4:79053457-79053476	None:intergenic	30.0%
ACCAATTTGGATATTTACTC+AGG	+	chr7.4:79049971-79049990	MS.gene98420:intron	30.0%
ACCATAAGATAAATCCAGAA+AGG	-	chr7.4:79051415-79051434	None:intergenic	30.0%
AGTAACTCACTAAAATGTGT+GGG	+	chr7.4:79052189-79052208	MS.gene98420:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.4	gene	79048776	79053964	79048776	ID=MS.gene98420
chr7.4	mRNA	79048776	79053964	79048776	ID=MS.gene98420.t1;Parent=MS.gene98420
chr7.4	exon	79048776	79048959	79048776	ID=MS.gene98420.t1.exon1;Parent=MS.gene98420.t1
chr7.4	CDS	79048776	79048959	79048776	ID=cds.MS.gene98420.t1;Parent=MS.gene98420.t1
chr7.4	exon	79050788	79050897	79050788	ID=MS.gene98420.t1.exon2;Parent=MS.gene98420.t1
chr7.4	CDS	79050788	79050897	79050788	ID=cds.MS.gene98420.t1;Parent=MS.gene98420.t1
chr7.4	exon	79051260	79051505	79051260	ID=MS.gene98420.t1.exon3;Parent=MS.gene98420.t1
chr7.4	CDS	79051260	79051505	79051260	ID=cds.MS.gene98420.t1;Parent=MS.gene98420.t1
chr7.4	exon	79051619	79051699	79051619	ID=MS.gene98420.t1.exon4;Parent=MS.gene98420.t1
chr7.4	CDS	79051619	79051699	79051619	ID=cds.MS.gene98420.t1;Parent=MS.gene98420.t1
chr7.4	exon	79051820	79052053	79051820	ID=MS.gene98420.t1.exon5;Parent=MS.gene98420.t1
chr7.4	CDS	79051820	79052053	79051820	ID=cds.MS.gene98420.t1;Parent=MS.gene98420.t1
chr7.4	exon	79053617	79053964	79053617	ID=MS.gene98420.t1.exon6;Parent=MS.gene98420.t1
chr7.4	CDS	79053617	79053964	79053617	ID=cds.MS.gene98420.t1;Parent=MS.gene98420.t1

Gene Sequence

>MS.gene98420

ATGACCGGGAAAATGGTGGAGACGGTGGAGCAACCTAACGAAGAAGAGCTTTCTCTTCTTTCAGTTTCAGATAATGGTGACCGGTCATGGCGGTTGAACTTCGACTCTTTTCAGTTGAATTCTCAGCATACTGAAAAGACACCTAAACCCTCTTCTGGTATTCATGACTGCTATGGTGTTCTTGGTAATTTTCTTTCTCTTTAATTTTTTTAGCATTTTTAAATTTTTATTTTTTTTATTAAGTATTCTTGTCTTAGCTCTTAATCGATGAATAATTAAAATATTATACAATGTTAAATTAGTAACCATAGAATCTTTGAAATTGTATGAGCTTAGTTTAGTTTCCACATTTCAAAATGTTCTTTGATGTATCTGGATCTATTATCAAATATATACTGTAGCACTTACACTTCTGATCGAAGGTGTTCGGTGTTTGACATGTCAATGTCAAGTGTCTGACACTGACACCACACAGACACATTGATTGTATTCCGTTAATTTATTTTCTCAGATTAGTTATTGTTGTCGTGTCCAGTGTTTGTGTATGTGATATGTACAATCTATCTTTGATATTATTCACTTTGTGCATGTTTGGTATATCTGTGAGTTTGTTGAAATCAAGGTAAGTTGCTTTGATTTGGTAAAAACTACAATGTTATTTTTATGAAATCACTCATGTGATTTCGGCTAACTCATTGTGATATTAATCATGCTTTAATTTCAAATTTATTTACGGATTTACCAACTTTTTGTTAAGAAGCTAAATTAGCTCTCTCAAATTGGCACCGAGGAGAATCGAACCTGAGACCTTGAGAAGGAGCATACTCCAAGGTCTCACGCCAACACTTGGCCAACCCAAATGGGTTCGGACTTACCAACTTAATTACATTATGCTCCCTACAAATAATAGCAGAAATGATTTTTGGACACACATTTTGACATCAGACATTGTATAAACATATTGTTTTCGTTTTTTTTTTTTTTTTTTTGTTAATATTTTCTCATGACTAAGATGATGATGAAAAAAAGCACTAGTTCGCTAGTTTTCACGGTGTTTGCCAGTTCTTATGTCCAAATAACAGCTGTTAATAATAAAGTAGGGGACAAATTTGATTAACATTTTGCAATTTCATGAATCATTTTGAAATATTGTTAATTTAGACGACTAAGTTGATCTGTTCTGATATTTTTGGAGACCAATTTGGATATTTACTCAGGGAACTGATTCCTCTTTTTATTTTATTTTTTATTTAATTAATTTATACTATTATTTTAGAATCTACTTTTTCTTAGTTGAGAATCTTTGTCTTTTTAATGAGAATCTACAATTTGTTTTGTATCAATGGCTGTGGTTGATTATGAGGAATGTGCTGTTGGAATTTTACTGTTTTGGTGTGATTTTAAGTTCCTTATGTTTTCCTTATGGCTCTTTATATATTCAAATTCTATTTTTGTGTTTCTCTTTGCAATAAGTCTAGAACTTGTTTCAGTTTTCTGGAAGATGCTATCGATGGATGTAATGCAGAGTGAGTAGTAGACTATGTTTTCTAGTTCACTTTTTCTTCCAGGTTTAACAAATATCGGGATTTGGAAGTTGTGTAGATACAAAAGGTGTTTTGTTGTTGAGAATTTCGGTTTTTGGGTAGATATCTTGGTTTAACATATTAAAGTTTATTTGTGTTTTTGACATATTTGAAGCTGGATTTAAGTTAAGGGAGCTTTTGCATGCTTTTCTAGAGACCAGAGGCGAAACTTTTAGACTATGGACTAATTTTTATTTTTGTTTCTTTTCCGTGATTTAAGTGCAATAAGTTGCATTTATTTGATGCACTACATTTTCATTTGAGTTGAATGCATTTGACTTTTGCTTTATTTCTTGCTATGGAGTTGTTTGGACTTTATCTTGTTACATCATATGCTTTCTATTCTAAGTTTGTTTGGACTCTGCTATTTAACGGAAAGGTGATTTCATGACTATGTTTTAAATTTCGTTCTCTTTTCTGTTTTGTTAGGTCAAGAAGATAATATTGCTGAGTACTATCAGCAGCAGGTTGAAGTGCTTGAAGGCTTTACCGAAATGGATGCCTTAGCAGAGCGTGGTTTCCTTCCCGGAATGTCAAAGGTTTCTATTTCATTTTCTCCTTTATCTTCTCTAGATCTAAACACCAATAATACTTAATTAAGAGCTTATATTATAAGCGTTTATCATAAAAGCGCTTATGCGTAAGATTTTTCTATAGCAAAAGATAAAATAAAGTCAAATTTATTTTCATATAAGCTATAAGATGTTTTCTTATGAAATCATGGAGAGCTTTTGAAAGTAAGCTGCAAATAGCTTATGGACATGACATGTAATAAGATGTTTCCATAGGCTCCCTCAAACGGTTTCACAAGTGCTTATGCCAGATCATAAGTTCAAATAAGCCAATCCAAACGAGACTATAGAGTCAAACGCCTTGGCTGAGTATCCACAATTGTATGCAGGAGGAGCGAGATAAGTTAGCCAGGAGCGAGACGTTTGCCATCAGAATATCGAACATAGCTAACATGGTTCTTTTTACTGCCAAAGTTTATGCATCAATCAGAAGTGGCTCCCTTGCCATCATTGCATCCACTTTAGACTCTCTTCTGGACCTCCTTTCTGGATTTATCTTATGGTTCACTGCATTTTCCATGCAAACACCAAATCCGTATCAGTACCCTATTGGAAAGAAGCGGATGCAACCATTGGTCAGTCCTCAAATTAATATTCTGTTTGAAGTTTTCTGAATCATCGTGTATTCTTGCTAGTAGTTATGAATACATCATTGTGCTAGTATTTTAAAGTTCAAAATTGTGTGCAGGGAATTCTGGTGTTTGCCTCTGTCATGGCGACTCTAGGGCTGCAAATAATTTTGGAGTCTGCCCGCACACTAATATACACTGTAAGTTGATGTAGCTACATTTCCTGAGGCTTAGTTGATACAAACAGTTAAAAGTAGTTTGTTGGATCTCATTAATTTATAGGTAATTGGTGCTAATGCTTGTCTTAATGAAATTTCCAGGATAATACCTTCAGCTTGACTAAGGAACAAGAGCGCTGGGTTGTGGGTATTATGCTTTCAGTGACTTTGGTGAAATTCATGCTAATGATTTATTGCCGCTCTTTTACTAATGAGATTGTGAAGGCCTATGCTCAGGATCACTTTTTTGATGTGATCACTAATGTGATTGGTCTAATTGCTGCACTTTTGGCCAATTATTTTGATGATTGGATGGATCCTGTTGGTGCTATCATTGTAAGTAAATACTTTCCTTATGTGAATCTATAATACTTTCCTTATAGCCTAATTAAATACGAATGTCAATGAGTATACACAAAATTTATCCATGATTCCTTTCTTATATATGGGTAGAATTGGGTACAGGTAATTAGTAACTCACTAAAATGTGTGGGTATGGGTAATATAGTATCCACTGTGCCACATTCTGGACACACTATATTAAATTTTCTTTCCTAATATCTACACATTTTAGTTTAGTTGTTCTATAGTTTTTTTTGAAAAAATATTTCCTTATTCATTGCATTTATTTACCTTTTTCTGCTGTATTTGAATGTGGTTAAAATGTTTTGTCTGTAATATTTTATAATTTAAACTTGAATGATCTTTGGATATCTTTTCAGTACCATTCAATTTTTTTTTTTAACGGCTTTTCAGTTGAGTTTTATGTTGCACTTTTCCTGAATATTTGGTTCAATATAGGCAAGAAGAAATCACCCCTTCTTGTTTCTTTAATAATGGGAGGGAAATAGGATTAATTTACTAAATTGGTGGAAAGGGGTTGGTGTTGGCAGTGTTGAAGGCTGGTGTGTGTGGTGGTGATGATGGAGGGTTCCTTTGGCATGGAGGTAGGAGAGGACATCATGCACTCGTGGCGAGGGTAAAGGATAATTTTGAACTTCTTAATGTCAGTTAGGTCAATATACTTTGAATATTTAAAACACATTATCTCGCCATTTCAAATCCCTCTAATATTGAACAGGGCCAAAATTGAGAGAGGAGGGATTTTGTCCCCCCTCGTTCCCTTCCCCTCCAATTTTTGAACTAAACCAAGACACTTTCCATCTTTCCCTCTCCTCCATTTTCCTCAATCAAACACCAAGTAAATCAATGTTCCTTTTTATTTATTTTTCATTGTTAAGGGTGTAGATATATTAGCATCCTTATGAGACTCTATCCTTGTAATACCTACTTTTTTGACAAGGATATATTTGTCTGCCATCAGTTTGGCCTTTGATAAACAATTGATGAATGAGATTCATTCCTTGGGATAGATGGCAATGAATGAAGTATACAAATAGTATTTCCAGTAATCTCATTCATCGTTGACAACTGTAATTACTGGCTATCCATAATTGTTTCAGCTTTTGCGATGCTTTTATATTTTGAAAAATCTAGATTTCAGATTGTATAAGAAGAAATCTCTCATTACAGGAGATCTGTGTTAGATGATTGTAAATATCTAAGTAGCTTATCATAATTTCTGCAACCTCTCAAACTTTGTGCATCATATGCAGTGTTGTCAAATAGCAGGTATAGCAGCGCTTTAGAGCTACGGCGTAATGGAATTTTAATAAACTGCTATTCTTCATAGAAAGTGTTATCAAATAGCGGCTATTGAACAAACAGTTATTATGCCATTTTCTTGACTGCTAAGATTTTAGGAACTACCATTGGCTCTTTTGAGCACTGAATCTTATGAAATATTTTTTATCTGTACATGTCACTTGCCGCCATCTTATAGTTGTTAAATATCAAATGCACCACCCCTTTTACTTACGTGTAATTCTTTCACTGCAGCTGGCTTTGTACACAATTCGCACATGGTCAATGACAGTGTTGGAAAATGTGAATTCACTTGTTGGAAGATCAGCTGCACCAGAGTATCTTCAGAAACTTACATACCTCTGCTGGAACCACCACAAGGCTGTAAGACACATTGACACTGTTCGGGCATATACATTCGGCTCTCACTACTTTGTTGAGGTTGATATCGTTCTACCAGCAGACATGCCTTTGCAAGAGGCTCATGATATCGGGGAATCATTGCAAGAGAAGCTCGAACTTTTGCCTGAGATCGAGCGTGCTTTTGTTCATCTCGATTATGAATTCAGTCACAAACCTGAGCATGCACAAGCACATTCTTAG

Protein sequence

>MS.gene98420.t1

MTGKMVETVEQPNEEELSLLSVSDNGDRSWRLNFDSFQLNSQHTEKTPKPSSGIHDCYGVLGQEDNIAEYYQQQVEVLEGFTEMDALAERGFLPGMSKEERDKLARSETFAIRISNIANMVLFTAKVYASIRSGSLAIIASTLDSLLDLLSGFILWFTAFSMQTPNPYQYPIGKKRMQPLGILVFASVMATLGLQIILESARTLIYTDNTFSLTKEQERWVVGIMLSVTLVKFMLMIYCRSFTNEIVKAYAQDHFFDVITNVIGLIAALLANYFDDWMDPVGAIILALYTIRTWSMTVLENVNSLVGRSAAPEYLQKLTYLCWNHHKAVRHIDTVRAYTFGSHYFVEVDIVLPADMPLQEAHDIGESLQEKLELLPEIERAFVHLDYEFSHKPEHAQAHS