Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene039220.t1 | XP_013464389.2 | 92.9 | 505 | 36 | 0 | 6 | 510 | 1 | 505 | 8.50E-278 | 965.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene039220.t1 | Q9SAG4 | 26.8 | 459 | 259 | 15 | 22 | 457 | 50 | 454 | 1.6e-22 | 109.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene039220.t1 | A0A396JBM2 | 92.9 | 505 | 36 | 0 | 6 | 510 | 1 | 505 | 6.2e-278 | 965.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene039220 | MS.gene033695 | PPI |
| MS.gene039220 | MS.gene51795 | PPI |
| MS.gene54959 | MS.gene039220 | PPI |
| MS.gene01653 | MS.gene039220 | PPI |
| MS.gene047137 | MS.gene039220 | PPI |
| MS.gene047136 | MS.gene039220 | PPI |
| MS.gene039220 | MS.gene024262 | PPI |
| MS.gene78164 | MS.gene039220 | PPI |
| MS.gene51793 | MS.gene039220 | PPI |
| MS.gene039220 | MS.gene045772 | PPI |
| MS.gene072003 | MS.gene039220 | PPI |
| MS.gene072000 | MS.gene039220 | PPI |
| MS.gene065373 | MS.gene039220 | PPI |
| MS.gene002112 | MS.gene039220 | PPI |
| MS.gene071257 | MS.gene039220 | PPI |
| MS.gene54960 | MS.gene039220 | PPI |
| MS.gene033694 | MS.gene039220 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene039220.t1 | MTR_2g070780 | 92.669 | 341 | 25 | 0 | 6 | 346 | 1 | 341 | 0.0 | 644 |
| MS.gene039220.t1 | MTR_6g034190 | 58.269 | 520 | 193 | 4 | 6 | 510 | 1 | 511 | 0.0 | 587 |
| MS.gene039220.t1 | MTR_2g072240 | 50.682 | 513 | 180 | 8 | 6 | 510 | 1 | 448 | 3.27e-166 | 478 |
| MS.gene039220.t1 | MTR_2g071700 | 71.598 | 338 | 92 | 2 | 6 | 339 | 1 | 338 | 3.52e-160 | 458 |
| MS.gene039220.t1 | MTR_2g071720 | 76.796 | 181 | 26 | 1 | 346 | 510 | 1 | 181 | 2.02e-94 | 285 |
| MS.gene039220.t1 | MTR_2g070820 | 90.090 | 111 | 11 | 0 | 280 | 390 | 1 | 111 | 3.78e-64 | 204 |
| MS.gene039220.t1 | MTR_2g070660 | 56.853 | 197 | 51 | 3 | 6 | 198 | 1 | 167 | 6.35e-61 | 198 |
| MS.gene039220.t1 | MTR_2g070810 | 97.872 | 47 | 1 | 0 | 6 | 52 | 49 | 95 | 6.28e-24 | 96.3 |
| MS.gene039220.t1 | MTR_2g047858 | 24.330 | 448 | 275 | 15 | 18 | 457 | 111 | 502 | 2.01e-15 | 79.3 |
| MS.gene039220.t1 | MTR_7g095350 | 27.331 | 311 | 193 | 11 | 27 | 328 | 13 | 299 | 3.61e-12 | 69.3 |
| MS.gene039220.t1 | MTR_7g095350 | 27.331 | 311 | 193 | 11 | 27 | 328 | 13 | 299 | 3.89e-12 | 68.6 |
| MS.gene039220.t1 | MTR_7g095350 | 27.331 | 311 | 193 | 11 | 27 | 328 | 21 | 307 | 4.06e-12 | 68.9 |
| MS.gene039220.t1 | MTR_7g095350 | 27.331 | 311 | 193 | 11 | 27 | 328 | 13 | 299 | 4.53e-12 | 68.6 |
| MS.gene039220.t1 | MTR_8g468470 | 25.658 | 456 | 283 | 20 | 21 | 457 | 13 | 431 | 5.38e-12 | 68.2 |
| MS.gene039220.t1 | MTR_7g095350 | 27.331 | 311 | 193 | 11 | 27 | 328 | 21 | 307 | 5.64e-12 | 68.2 |
| MS.gene039220.t1 | MTR_1g016340 | 22.667 | 450 | 287 | 13 | 17 | 457 | 10 | 407 | 6.74e-12 | 67.8 |
| MS.gene039220.t1 | MTR_4g024770 | 40.845 | 71 | 42 | 0 | 2 | 72 | 4 | 74 | 7.18e-12 | 61.6 |
| MS.gene039220.t1 | MTR_1g016340 | 22.667 | 450 | 287 | 13 | 17 | 457 | 15 | 412 | 7.68e-12 | 67.8 |
| MS.gene039220.t1 | MTR_8g014180 | 52.727 | 55 | 26 | 0 | 6 | 60 | 1 | 55 | 8.45e-12 | 60.8 |
| MS.gene039220.t1 | MTR_2g082860 | 56.000 | 50 | 22 | 0 | 21 | 70 | 26 | 75 | 1.60e-11 | 62.0 |
| MS.gene039220.t1 | MTR_7g007370 | 50.820 | 61 | 30 | 0 | 6 | 66 | 1 | 61 | 1.84e-11 | 65.9 |
| MS.gene039220.t1 | MTR_3g448340 | 24.532 | 481 | 268 | 20 | 17 | 457 | 1 | 426 | 4.77e-11 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene039220.t1 | AT1G80960 | 27.273 | 462 | 253 | 17 | 22 | 457 | 11 | 415 | 4.72e-22 | 99.4 |
| MS.gene039220.t1 | AT1G80960 | 27.273 | 462 | 253 | 17 | 22 | 457 | 50 | 454 | 5.26e-22 | 99.4 |
| MS.gene039220.t1 | AT1G80960 | 27.273 | 462 | 253 | 17 | 22 | 457 | 50 | 454 | 5.26e-22 | 99.4 |
| MS.gene039220.t1 | AT1G80960 | 27.273 | 462 | 253 | 17 | 22 | 457 | 50 | 454 | 5.26e-22 | 99.4 |
| MS.gene039220.t1 | AT1G80960 | 31.023 | 303 | 151 | 11 | 22 | 308 | 50 | 310 | 2.82e-21 | 97.1 |
| MS.gene039220.t1 | AT1G80960 | 31.023 | 303 | 151 | 11 | 22 | 308 | 50 | 310 | 2.86e-21 | 96.3 |
| MS.gene039220.t1 | AT1G67390 | 26.333 | 300 | 183 | 9 | 7 | 302 | 27 | 292 | 5.99e-16 | 80.9 |
| MS.gene039220.t1 | AT3G59190 | 24.506 | 506 | 285 | 24 | 15 | 467 | 5 | 466 | 8.64e-16 | 80.5 |
| MS.gene039220.t1 | AT3G26922 | 28.276 | 290 | 156 | 10 | 21 | 302 | 13 | 258 | 2.45e-15 | 77.4 |
| MS.gene039220.t1 | AT3G26922 | 28.276 | 290 | 156 | 10 | 21 | 302 | 13 | 258 | 2.45e-15 | 77.4 |
| MS.gene039220.t1 | AT1G78760 | 22.863 | 503 | 284 | 18 | 11 | 481 | 5 | 435 | 2.42e-13 | 72.4 |
| MS.gene039220.t1 | AT5G41830 | 24.939 | 409 | 232 | 19 | 11 | 384 | 2 | 370 | 5.82e-13 | 71.6 |
| MS.gene039220.t1 | AT5G62970 | 22.845 | 464 | 266 | 17 | 29 | 457 | 10 | 416 | 1.38e-12 | 70.1 |
| MS.gene039220.t1 | AT3G59190 | 25.248 | 404 | 227 | 18 | 15 | 384 | 5 | 367 | 3.37e-12 | 68.6 |
| MS.gene039220.t1 | AT5G22730 | 21.881 | 489 | 273 | 19 | 9 | 457 | 15 | 434 | 1.95e-11 | 66.6 |
| MS.gene039220.t1 | AT5G22730 | 21.881 | 489 | 273 | 19 | 9 | 457 | 15 | 434 | 1.95e-11 | 66.6 |
| MS.gene039220.t1 | AT3G60790 | 26.797 | 306 | 178 | 14 | 7 | 306 | 40 | 305 | 2.32e-11 | 66.6 |
| MS.gene039220.t1 | AT3G52680 | 53.731 | 67 | 30 | 1 | 1 | 67 | 1 | 66 | 6.13e-11 | 64.7 |
| MS.gene039220.t1 | AT3G52680 | 53.731 | 67 | 30 | 1 | 1 | 67 | 1 | 66 | 9.61e-11 | 64.3 |
Find 101 sgRNAs with CRISPR-Local
Find 162 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAAAATCTGTTGAGGATTA+AGG | 0.153196 | 2.1:+27527273 | None:intergenic |
| GTTAAGTACTTAATATTAAA+TGG | 0.208632 | 2.1:-27525689 | MS.gene039220:CDS |
| TGAAATTTGTGATGGCATTT+TGG | 0.220106 | 2.1:-27526895 | MS.gene039220:intron |
| CCTCACACTCTAGGTCAATT+TGG | 0.235008 | 2.1:-27525858 | MS.gene039220:intron |
| TTCTGAATAATATTACAATT+TGG | 0.250934 | 2.1:-27525661 | MS.gene039220:CDS |
| CTTACCCTGGAAGTTTGTTT+TGG | 0.254096 | 2.1:-27525802 | MS.gene039220:CDS |
| CAATATGGCTGAAGCAATAA+TGG | 0.261497 | 2.1:-27528206 | None:intergenic |
| TGTGAACGAGCGTAGGATTT+TGG | 0.266869 | 2.1:-27527090 | MS.gene039220:CDS |
| CCTTGATACAAACATTCTTT+AGG | 0.277807 | 2.1:+27525744 | None:intergenic |
| GATTCTTGTGATTATCGTTA+TGG | 0.307940 | 2.1:-27527413 | MS.gene039220:CDS |
| GCACGTAGAACCCGAAGTTT+TGG | 0.308366 | 2.1:+27526993 | None:intergenic |
| TCGTAGCAACTGCATGTTTA+CGG | 0.321573 | 2.1:-27525610 | MS.gene039220:CDS |
| CAAAATCTGTTGAGGATTAA+GGG | 0.329839 | 2.1:+27527274 | None:intergenic |
| TTCAGCCAAAACAAACTTCC+AGG | 0.338704 | 2.1:+27525797 | None:intergenic |
| ATAGAGTATATAAGAAAATA+TGG | 0.344916 | 2.1:-27525539 | MS.gene039220:CDS |
| TTTGTCTTTCGTCAAAATTA+AGG | 0.347473 | 2.1:+27528014 | None:intergenic |
| TACAATAATGTTCAAATGCT+TGG | 0.353231 | 2.1:-27526969 | MS.gene039220:CDS |
| CTTAGAGGCCCCAAAACTTC+GGG | 0.365917 | 2.1:-27527003 | MS.gene039220:CDS |
| ACCTTCAACCTTGCAGTGAC+TGG | 0.369484 | 2.1:-27527947 | MS.gene039220:CDS |
| TTGTGCAAGTGGGGATGTTG+TGG | 0.396215 | 2.1:-27527489 | MS.gene039220:CDS |
| TGTGCAAGTGGGGATGTTGT+GGG | 0.402090 | 2.1:-27527488 | MS.gene039220:CDS |
| CAACTCAAGAACCTTAAAAC+TGG | 0.403099 | 2.1:+27527325 | None:intergenic |
| TTATTTGAAGATTCATTAGT+TGG | 0.403722 | 2.1:+27525969 | None:intergenic |
| GTTCTCACAACTTCCGTGTA+AGG | 0.409642 | 2.1:+27528085 | None:intergenic |
| TCATGAAGATCTGATCTTAG+AGG | 0.415542 | 2.1:-27527018 | MS.gene039220:CDS |
| TGCAAGGTTGAAGGTTAGTC+TGG | 0.416973 | 2.1:+27527955 | None:intergenic |
| TATTTGAAGATTCATTAGTT+GGG | 0.418765 | 2.1:+27525970 | None:intergenic |
| TCAAATATTGACAATCATAT+TGG | 0.420752 | 2.1:-27527551 | MS.gene039220:CDS |
| CCCAGTCACTGCAAGGTTGA+AGG | 0.430755 | 2.1:+27527946 | None:intergenic |
| CCTAAAGAATGTTTGTATCA+AGG | 0.437189 | 2.1:-27525744 | MS.gene039220:CDS |
| TACAAACATTCTTTAGGTTG+TGG | 0.449660 | 2.1:+27525750 | None:intergenic |
| ATGGTGGTAGCTTTGATGAT+TGG | 0.451451 | 2.1:-27525520 | MS.gene039220:CDS |
| TGGTGGTAGCTTTGATGATT+GGG | 0.457946 | 2.1:-27525519 | MS.gene039220:CDS |
| GGGATGTTGTGGGGTGGATG+AGG | 0.463671 | 2.1:-27527478 | MS.gene039220:CDS |
| GCATTCCTTTCAATCATGTC+TGG | 0.464346 | 2.1:+27527383 | None:intergenic |
| TATCCCAGGTTTCAGATCAA+TGG | 0.467659 | 2.1:+27525559 | None:intergenic |
| CTAAAGAATGTTTGTATCAA+GGG | 0.467863 | 2.1:-27525743 | MS.gene039220:CDS |
| TCTAATGCTACAACTCTTCA+AGG | 0.468328 | 2.1:+27527526 | None:intergenic |
| ATATAAGCTAGAAGTGCATC+AGG | 0.471803 | 2.1:+27528121 | None:intergenic |
| TCCCCACTTGCACAACTCTC+AGG | 0.473005 | 2.1:+27527497 | None:intergenic |
| CCACAATGATTCCCATCGCT+TGG | 0.478803 | 2.1:+27528051 | None:intergenic |
| TTATCCATTGATCTGAAACC+TGG | 0.478986 | 2.1:-27525563 | MS.gene039220:CDS |
| ACAACTTCCGTGTAAGGAAG+TGG | 0.493916 | 2.1:+27528091 | None:intergenic |
| AAACTGGAGAAAACTTCAAA+AGG | 0.495741 | 2.1:+27527341 | None:intergenic |
| CATTTCTCCACTTCCTTACA+CGG | 0.495992 | 2.1:-27528098 | MS.gene039220:CDS |
| AGGGACACAAATCAGAGTTA+TGG | 0.497222 | 2.1:-27528173 | MS.gene039220:CDS |
| GTGCAAGTGGGGATGTTGTG+GGG | 0.497345 | 2.1:-27527487 | MS.gene039220:CDS |
| TCTTAGAGGCCCCAAAACTT+CGG | 0.498004 | 2.1:-27527004 | MS.gene039220:CDS |
| GATAATTTCAGAGAGAGCTT+CGG | 0.503369 | 2.1:+27525581 | None:intergenic |
| CAAGTGGGGATGTTGTGGGG+TGG | 0.508240 | 2.1:-27527484 | MS.gene039220:CDS |
| CAAAACAAACTTCCAGGGTA+AGG | 0.518602 | 2.1:+27525803 | None:intergenic |
| CTTTCGTCAAAATTAAGGCT+AGG | 0.519973 | 2.1:+27528019 | None:intergenic |
| GATATTATTGAAATTTGTGA+TGG | 0.520194 | 2.1:-27526903 | MS.gene039220:CDS |
| AATATGGCTGAAGCAATAAT+GGG | 0.521425 | 2.1:-27528205 | MS.gene039220:CDS |
| TTAAGAAATCACATTTCTCA+AGG | 0.522132 | 2.1:+27527165 | None:intergenic |
| GCAATAATGGGTGAAGGAGA+AGG | 0.522729 | 2.1:-27528193 | MS.gene039220:CDS |
| TCAATTCAAAATCGAGGCAA+AGG | 0.529641 | 2.1:+27526041 | None:intergenic |
| TTTCTTATATACTCTATCCC+AGG | 0.537281 | 2.1:+27525545 | None:intergenic |
| TATCCATTGATCTGAAACCT+GGG | 0.540917 | 2.1:-27525562 | MS.gene039220:CDS |
| ATTTGAAGATTCATTAGTTG+GGG | 0.541423 | 2.1:+27525971 | None:intergenic |
| CCTTCAACCTTGCAGTGACT+GGG | 0.545409 | 2.1:-27527946 | MS.gene039220:CDS |
| TGCAGTGACTGGGCAACGTA+AGG | 0.547546 | 2.1:-27527936 | MS.gene039220:intron |
| CAATTCAAAATCGAGGCAAA+GGG | 0.555813 | 2.1:+27526042 | None:intergenic |
| AACTTCAAAAGGTAAATCAA+TGG | 0.562125 | 2.1:+27527352 | None:intergenic |
| TACCGTTCAATTCAAAATCG+AGG | 0.564943 | 2.1:+27526035 | None:intergenic |
| CAAGTGTGCTATCCAAGCGA+TGG | 0.569302 | 2.1:-27528063 | MS.gene039220:CDS |
| ATGTGATTTCTTAACAGATG+AGG | 0.570169 | 2.1:-27527156 | MS.gene039220:CDS |
| TCAGCCAAAACAAACTTCCA+GGG | 0.571326 | 2.1:+27525798 | None:intergenic |
| TCTTGTGATTATCGTTATGG+AGG | 0.571564 | 2.1:-27527410 | MS.gene039220:CDS |
| TACGTTGCCCAGTCACTGCA+AGG | 0.580216 | 2.1:+27527939 | None:intergenic |
| TTTGGTTTCTGCATTTAACA+TGG | 0.582670 | 2.1:-27527072 | MS.gene039220:CDS |
| GAATACCAGACATGATTGAA+AGG | 0.585171 | 2.1:-27527388 | MS.gene039220:CDS |
| TTTGTGATGTGAACGAGCGT+AGG | 0.592653 | 2.1:-27527097 | MS.gene039220:CDS |
| CAATAATGGGTGAAGGAGAA+GGG | 0.594550 | 2.1:-27528192 | MS.gene039220:CDS |
| AAGTGTGCTATCCAAGCGAT+GGG | 0.595727 | 2.1:-27528062 | MS.gene039220:CDS |
| GGTCATCGAGGTTCTAGCAT+GGG | 0.596942 | 2.1:-27526088 | MS.gene039220:CDS |
| GAATCTTCAAATAAATAACC+AGG | 0.602091 | 2.1:-27525960 | MS.gene039220:intron |
| TACTATGATCAAAATGACAA+TGG | 0.603700 | 2.1:-27525833 | MS.gene039220:CDS |
| GTTTGTATCAAGGGATACAA+AGG | 0.605257 | 2.1:-27525734 | MS.gene039220:CDS |
| AATATTTGATGTAACCATCA+TGG | 0.606995 | 2.1:+27527565 | None:intergenic |
| CCAAGCGATGGGAATCATTG+TGG | 0.608200 | 2.1:-27528051 | MS.gene039220:CDS |
| GACACAAATCAGAGTTATGG+AGG | 0.609354 | 2.1:-27528170 | MS.gene039220:CDS |
| AAGTACTTAATATTAAATGG+AGG | 0.612207 | 2.1:-27525686 | MS.gene039220:CDS |
| ACAGGTAGATCTTGAAAGTG+AGG | 0.613723 | 2.1:-27527606 | MS.gene039220:intron |
| TTGTGGCTGACACACCTACA+CGG | 0.616160 | 2.1:+27525767 | None:intergenic |
| AATGGCTGTCTTCCTTACCC+TGG | 0.616901 | 2.1:-27525815 | MS.gene039220:CDS |
| ATCTGTTGAGGATTAAGGGA+GGG | 0.619665 | 2.1:+27527278 | None:intergenic |
| AGAGTATTCAAAATCTGTTG+AGG | 0.620364 | 2.1:+27527266 | None:intergenic |
| TGCCTGAGAGTTGTGCAAGT+GGG | 0.620485 | 2.1:-27527499 | MS.gene039220:CDS |
| GCCTGAGAGTTGTGCAAGTG+GGG | 0.621594 | 2.1:-27527498 | MS.gene039220:CDS |
| CAAGAGATGAACAATGAGAG+AGG | 0.622832 | 2.1:+27527198 | None:intergenic |
| GCTGAAGCAATAATGGGTGA+AGG | 0.623645 | 2.1:-27528199 | MS.gene039220:CDS |
| GGGTCATCGAGGTTCTAGCA+TGG | 0.629061 | 2.1:-27526089 | MS.gene039220:CDS |
| TGTGGCTGACACACCTACAC+GGG | 0.629776 | 2.1:+27525768 | None:intergenic |
| CTAATGCTACAACTCTTCAA+GGG | 0.636034 | 2.1:+27527527 | None:intergenic |
| GGCTGAAAAGAGACCCGTGT+AGG | 0.671792 | 2.1:-27525781 | MS.gene039220:CDS |
| TTGCCTGAGAGTTGTGCAAG+TGG | 0.675075 | 2.1:-27527500 | MS.gene039220:CDS |
| GAGTATATAAGAAAATATGG+TGG | 0.676614 | 2.1:-27525536 | MS.gene039220:CDS |
| TGATTGTCTTAGGGTCATCG+AGG | 0.687412 | 2.1:-27526100 | MS.gene039220:intron |
| AATCTGTTGAGGATTAAGGG+AGG | 0.688199 | 2.1:+27527277 | None:intergenic |
| TTTGAAGATTCATTAGTTGG+GGG | 0.726871 | 2.1:+27525972 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATATATATAATTTATATA+TGG | - | chr2.1:27526989-27527008 | MS.gene039220:CDS | 0.0% |
| !! | AATTCTTTATATAAATTCTT+TGG | + | chr2.1:27527502-27527521 | None:intergenic | 10.0% |
| !! | TCAAATATGATATATATTAT+TGG | - | chr2.1:27526063-27526082 | MS.gene039220:CDS | 10.0% |
| !! | ATAGAGTATATAAGAAAATA+TGG | - | chr2.1:27528165-27528184 | MS.gene039220:CDS | 15.0% |
| !! | ATGATATCTATTTAATACTT+AGG | - | chr2.1:27527248-27527267 | MS.gene039220:CDS | 15.0% |
| !! | GTTAAGTACTTAATATTAAA+TGG | - | chr2.1:27528015-27528034 | MS.gene039220:CDS | 15.0% |
| !! | TAGATGAACTTTAATTATAA+AGG | - | chr2.1:27526036-27526055 | MS.gene039220:CDS | 15.0% |
| !! | TTCTGAATAATATTACAATT+TGG | - | chr2.1:27528043-27528062 | MS.gene039220:CDS | 15.0% |
| !!! | CACAAATTTTAATATATTTG+AGG | + | chr2.1:27526593-27526612 | None:intergenic | 15.0% |
| !!! | CATCTATTTTATTAGAAAAA+TGG | + | chr2.1:27526022-27526041 | None:intergenic | 15.0% |
| !!! | TAATATTACAATTTGGTTTT+TGG | - | chr2.1:27528050-27528069 | MS.gene039220:CDS | 15.0% |
| !!! | TATATAAAGAATTGAAGTTT+TGG | - | chr2.1:27527509-27527528 | MS.gene039220:CDS | 15.0% |
| !!! | TGTTTTTTACTATAAACTTT+AGG | - | chr2.1:27525813-27525832 | MS.gene039220:CDS | 15.0% |
| !! | AAATAATAGATACTCATGAT+AGG | + | chr2.1:27527443-27527462 | None:intergenic | 20.0% |
| !! | AAGTACTTAATATTAAATGG+AGG | - | chr2.1:27528018-27528037 | MS.gene039220:CDS | 20.0% |
| !! | AGTTCATAGCTTATTATATA+TGG | - | chr2.1:27527183-27527202 | MS.gene039220:CDS | 20.0% |
| !! | ATCAAACAGTTCATATTTAA+TGG | - | chr2.1:27525947-27525966 | MS.gene039220:intron | 20.0% |
| !! | CATTTCTTTATAGTTAATAG+AGG | - | chr2.1:27526894-27526913 | MS.gene039220:intron | 20.0% |
| !! | GATATTATTGAAATTTGTGA+TGG | - | chr2.1:27526801-27526820 | MS.gene039220:intron | 20.0% |
| !! | TAATCAATATTTGTAGCATA+AGG | + | chr2.1:27527335-27527354 | None:intergenic | 20.0% |
| !! | TATTTGAAGATTCATTAGTT+GGG | + | chr2.1:27527737-27527756 | None:intergenic | 20.0% |
| !! | TCAAATATTGACAATCATAT+TGG | - | chr2.1:27526153-27526172 | MS.gene039220:intron | 20.0% |
| !! | TTATTTGAAGATTCATTAGT+TGG | + | chr2.1:27527738-27527757 | None:intergenic | 20.0% |
| !!! | AGGTTTTATTACTATTCAAT+AGG | + | chr2.1:27527311-27527330 | None:intergenic | 20.0% |
| !!! | ATTTTAATATATTTGAGGCT+TGG | + | chr2.1:27526588-27526607 | None:intergenic | 20.0% |
| !!! | GGTTTTATTACTATTCAATA+GGG | + | chr2.1:27527310-27527329 | None:intergenic | 20.0% |
| !!! | TATAGTAATACTACATTTTG+AGG | + | chr2.1:27527541-27527560 | None:intergenic | 20.0% |
| !!! | TATATTTTCTGATTGTCTTA+GGG | - | chr2.1:27527595-27527614 | MS.gene039220:CDS | 20.0% |
| !!! | TTATATTTTCTGATTGTCTT+AGG | - | chr2.1:27527594-27527613 | MS.gene039220:CDS | 20.0% |
| ! | AACTTCAAAAGGTAAATCAA+TGG | + | chr2.1:27526355-27526374 | None:intergenic | 25.0% |
| ! | AATATTTGATGTAACCATCA+TGG | + | chr2.1:27526142-27526161 | None:intergenic | 25.0% |
| ! | ACTAATTGAGTATTTGTGAT+AGG | - | chr2.1:27527206-27527225 | MS.gene039220:CDS | 25.0% |
| ! | ATTTGAAGATTCATTAGTTG+GGG | + | chr2.1:27527736-27527755 | None:intergenic | 25.0% |
| ! | CTAAAGAATGTTTGTATCAA+GGG | - | chr2.1:27527961-27527980 | MS.gene039220:CDS | 25.0% |
| ! | GAATCTTCAAATAAATAACC+AGG | - | chr2.1:27527744-27527763 | MS.gene039220:intron | 25.0% |
| ! | GAGTATATAAGAAAATATGG+TGG | - | chr2.1:27528168-27528187 | MS.gene039220:CDS | 25.0% |
| ! | TACAATAATGTTCAAATGCT+TGG | - | chr2.1:27526735-27526754 | MS.gene039220:intron | 25.0% |
| ! | TACTATGATCAAAATGACAA+TGG | - | chr2.1:27527871-27527890 | MS.gene039220:intron | 25.0% |
| ! | TATTTAATGGAGAATGAACT+AGG | - | chr2.1:27525960-27525979 | MS.gene039220:intron | 25.0% |
| ! | TTAAGAAATCACATTTCTCA+AGG | + | chr2.1:27526542-27526561 | None:intergenic | 25.0% |
| ! | TTTGTCTTTCGTCAAAATTA+AGG | + | chr2.1:27525693-27525712 | None:intergenic | 25.0% |
| !! | TAAGCTATGAACTTTTTGTA+TGG | + | chr2.1:27527176-27527195 | None:intergenic | 25.0% |
| !!! | GGACAAAATGTTTTTATAGA+TGG | - | chr2.1:27526756-27526775 | MS.gene039220:intron | 25.0% |
| !!! | GGGAAGTATCTTTAAAAATT+TGG | - | chr2.1:27527636-27527655 | MS.gene039220:intron | 25.0% |
| !!! | TTTTTTGTGAAGATTAACCA+TGG | + | chr2.1:27525901-27525920 | None:intergenic | 25.0% |
| AAACTGGAGAAAACTTCAAA+AGG | + | chr2.1:27526366-27526385 | None:intergenic | 30.0% | |
| AGCCAAAAAATCAAATTGCA+TGG | + | chr2.1:27527373-27527392 | None:intergenic | 30.0% | |
| ATGTGATTTCTTAACAGATG+AGG | - | chr2.1:27526548-27526567 | MS.gene039220:intron | 30.0% | |
| CAAAATCTGTTGAGGATTAA+GGG | + | chr2.1:27526433-27526452 | None:intergenic | 30.0% | |
| CAATATTTGTAGCATAAGGA+AGG | + | chr2.1:27527331-27527350 | None:intergenic | 30.0% | |
| CACAAAAAATCACGCTTATT+GGG | - | chr2.1:27527143-27527162 | MS.gene039220:CDS | 30.0% | |
| CCTAAAGAATGTTTGTATCA+AGG | - | chr2.1:27527960-27527979 | MS.gene039220:CDS | 30.0% | |
| CCTTGATACAAACATTCTTT+AGG | + | chr2.1:27527963-27527982 | None:intergenic | 30.0% | |
| GATTCTTGTGATTATCGTTA+TGG | - | chr2.1:27526291-27526310 | MS.gene039220:intron | 30.0% | |
| TATTGGACTTTATGCATAAC+AGG | - | chr2.1:27526080-27526099 | MS.gene039220:CDS | 30.0% | |
| TCAAAATCTGTTGAGGATTA+AGG | + | chr2.1:27526434-27526453 | None:intergenic | 30.0% | |
| TCACAAAAAATCACGCTTAT+TGG | - | chr2.1:27527142-27527161 | MS.gene039220:CDS | 30.0% | |
| TTTCTTATATACTCTATCCC+AGG | + | chr2.1:27528162-27528181 | None:intergenic | 30.0% | |
| TTTGAAGATTCATTAGTTGG+GGG | + | chr2.1:27527735-27527754 | None:intergenic | 30.0% | |
| ! | AGAGTATTCAAAATCTGTTG+AGG | + | chr2.1:27526441-27526460 | None:intergenic | 30.0% |
| ! | TGAAATTTGTGATGGCATTT+TGG | - | chr2.1:27526809-27526828 | MS.gene039220:intron | 30.0% |
| ! | TGAAGTTTTCTCCAGTTTTA+AGG | - | chr2.1:27526368-27526387 | MS.gene039220:intron | 30.0% |
| ! | TTTGGTTTCTGCATTTAACA+TGG | - | chr2.1:27526632-27526651 | MS.gene039220:intron | 30.0% |
| !! | TACAAACATTCTTTAGGTTG+TGG | + | chr2.1:27527957-27527976 | None:intergenic | 30.0% |
| !!! | ATAAGCGTGATTTTTTGTGA+TGG | + | chr2.1:27527142-27527161 | None:intergenic | 30.0% |
| !!! | ATTTTTTGTGATGGCTCAAA+AGG | + | chr2.1:27527133-27527152 | None:intergenic | 30.0% |
| !!! | CTCCATGCAATTTGATTTTT+TGG | - | chr2.1:27527368-27527387 | MS.gene039220:CDS | 30.0% |
| !!! | TTTTTTGTGATGGCTCAAAA+GGG | + | chr2.1:27527132-27527151 | None:intergenic | 30.0% |
| ACTCGAAAAAGAGGTGATTA+AGG | - | chr2.1:27526254-27526273 | MS.gene039220:intron | 35.0% | |
| AGGGAATCATACATGCATTA+AGG | + | chr2.1:27527113-27527132 | None:intergenic | 35.0% | |
| CAACTCAAGAACCTTAAAAC+TGG | + | chr2.1:27526382-27526401 | None:intergenic | 35.0% | |
| CAATTCAAAATCGAGGCAAA+GGG | + | chr2.1:27527665-27527684 | None:intergenic | 35.0% | |
| CTAATGCTACAACTCTTCAA+GGG | + | chr2.1:27526180-27526199 | None:intergenic | 35.0% | |
| CTTTCGTCAAAATTAAGGCT+AGG | + | chr2.1:27525688-27525707 | None:intergenic | 35.0% | |
| GAATACCAGACATGATTGAA+AGG | - | chr2.1:27526316-27526335 | MS.gene039220:intron | 35.0% | |
| GAGGAAATTACTCGAAAAAG+AGG | - | chr2.1:27526245-27526264 | MS.gene039220:intron | 35.0% | |
| GATAATTTCAGAGAGAGCTT+CGG | + | chr2.1:27528126-27528145 | None:intergenic | 35.0% | |
| GTTTGTATCAAGGGATACAA+AGG | - | chr2.1:27527970-27527989 | MS.gene039220:CDS | 35.0% | |
| TACCGTTCAATTCAAAATCG+AGG | + | chr2.1:27527672-27527691 | None:intergenic | 35.0% | |
| TACTTAGGATGAACACAGAT+TGG | - | chr2.1:27527263-27527282 | MS.gene039220:CDS | 35.0% | |
| TCAATTCAAAATCGAGGCAA+AGG | + | chr2.1:27527666-27527685 | None:intergenic | 35.0% | |
| TCATGAAGATCTGATCTTAG+AGG | - | chr2.1:27526686-27526705 | MS.gene039220:intron | 35.0% | |
| TCTAATGCTACAACTCTTCA+AGG | + | chr2.1:27526181-27526200 | None:intergenic | 35.0% | |
| TCTTGTGATTATCGTTATGG+AGG | - | chr2.1:27526294-27526313 | MS.gene039220:intron | 35.0% | |
| TGCTGCATTACAATTCAACT+AGG | - | chr2.1:27526944-27526963 | MS.gene039220:CDS | 35.0% | |
| TTCCAAGTGAAGTATAGTAG+AGG | + | chr2.1:27526844-27526863 | None:intergenic | 35.0% | |
| TTCCTCTACTATACTTCACT+TGG | - | chr2.1:27526839-27526858 | MS.gene039220:intron | 35.0% | |
| ! | ATATAAGCTAGAAGTGCATC+AGG | + | chr2.1:27525586-27525605 | None:intergenic | 35.0% |
| ! | ATGCAAGCTTTTGACAACAA+GGG | - | chr2.1:27526779-27526798 | MS.gene039220:intron | 35.0% |
| ! | TATCCATTGATCTGAAACCT+GGG | - | chr2.1:27528142-27528161 | MS.gene039220:CDS | 35.0% |
| ! | TGCCTCGATTTTGAATTGAA+CGG | - | chr2.1:27527667-27527686 | MS.gene039220:intron | 35.0% |
| ! | TTATCCATTGATCTGAAACC+TGG | - | chr2.1:27528141-27528160 | MS.gene039220:CDS | 35.0% |
| !! | ACTATTCAATAGGGTGTTGA+TGG | + | chr2.1:27527301-27527320 | None:intergenic | 35.0% |
| AATCTGTTGAGGATTAAGGG+AGG | + | chr2.1:27526430-27526449 | None:intergenic | 40.0% | |
| ACAGGTAGATCTTGAAAGTG+AGG | - | chr2.1:27526098-27526117 | MS.gene039220:intron | 40.0% | |
| ACATTTAACCCTCACACTCT+AGG | - | chr2.1:27527837-27527856 | MS.gene039220:intron | 40.0% | |
| AGGGACACAAATCAGAGTTA+TGG | - | chr2.1:27525531-27525550 | MS.gene039220:CDS | 40.0% | |
| ATAACCAGGTATGCTTGCTT+AGG | - | chr2.1:27527758-27527777 | MS.gene039220:intron | 40.0% | |
| ATCTGTTGAGGATTAAGGGA+GGG | + | chr2.1:27526429-27526448 | None:intergenic | 40.0% | |
| CAAAACAAACTTCCAGGGTA+AGG | + | chr2.1:27527904-27527923 | None:intergenic | 40.0% | |
| CAAATTGACCTAGAGTGTGA+GGG | + | chr2.1:27527848-27527867 | None:intergenic | 40.0% | |
| CAAGAGATGAACAATGAGAG+AGG | + | chr2.1:27526509-27526528 | None:intergenic | 40.0% | |
| CATTTCTCCACTTCCTTACA+CGG | - | chr2.1:27525606-27525625 | MS.gene039220:CDS | 40.0% | |
| CTATATCTCTAGACAAGCCA+TGG | - | chr2.1:27525881-27525900 | MS.gene039220:intron | 40.0% | |
| GACACAAATCAGAGTTATGG+AGG | - | chr2.1:27525534-27525553 | MS.gene039220:CDS | 40.0% | |
| GCATTCCTTTCAATCATGTC+TGG | + | chr2.1:27526324-27526343 | None:intergenic | 40.0% | |
| GGCTTGTCTAGAGATATAGA+GGG | + | chr2.1:27525880-27525899 | None:intergenic | 40.0% | |
| TAATCCTAAGCAAGCATACC+TGG | + | chr2.1:27527765-27527784 | None:intergenic | 40.0% | |
| TATCCCAGGTTTCAGATCAA+TGG | + | chr2.1:27528148-27528167 | None:intergenic | 40.0% | |
| TCAGCCAAAACAAACTTCCA+GGG | + | chr2.1:27527909-27527928 | None:intergenic | 40.0% | |
| TCGTAGCAACTGCATGTTTA+CGG | - | chr2.1:27528094-27528113 | MS.gene039220:CDS | 40.0% | |
| TTCAGCCAAAACAAACTTCC+AGG | + | chr2.1:27527910-27527929 | None:intergenic | 40.0% | |
| ! | GATGCAAGCTTTTGACAACA+AGG | - | chr2.1:27526778-27526797 | MS.gene039220:intron | 40.0% |
| ! | TGGCTTGTCTAGAGATATAG+AGG | + | chr2.1:27525881-27525900 | None:intergenic | 40.0% |
| !! | ATGGTGGTAGCTTTGATGAT+TGG | - | chr2.1:27528184-27528203 | MS.gene039220:CDS | 40.0% |
| !! | CAATAATGGGTGAAGGAGAA+GGG | - | chr2.1:27525512-27525531 | MS.gene039220:CDS | 40.0% |
| !! | CTTACCCTGGAAGTTTGTTT+TGG | - | chr2.1:27527902-27527921 | MS.gene039220:intron | 40.0% |
| !! | GTTTTTGGATGACTGCTCAT+GGG | - | chr2.1:27528065-27528084 | MS.gene039220:CDS | 40.0% |
| !! | TGGTGGTAGCTTTGATGATT+GGG | - | chr2.1:27528185-27528204 | MS.gene039220:CDS | 40.0% |
| AAGATTCATTAGTTGGGGGC+AGG | + | chr2.1:27527731-27527750 | None:intergenic | 45.0% | |
| AAGTGTGCTATCCAAGCGAT+GGG | - | chr2.1:27525642-27525661 | MS.gene039220:CDS | 45.0% | |
| ACAACTTCCGTGTAAGGAAG+TGG | + | chr2.1:27525616-27525635 | None:intergenic | 45.0% | |
| CCAAATTGACCTAGAGTGTG+AGG | + | chr2.1:27527849-27527868 | None:intergenic | 45.0% | |
| CCTCACACTCTAGGTCAATT+TGG | - | chr2.1:27527846-27527865 | MS.gene039220:intron | 45.0% | |
| GTTCTCACAACTTCCGTGTA+AGG | + | chr2.1:27525622-27525641 | None:intergenic | 45.0% | |
| TCTTAGAGGCCCCAAAACTT+CGG | - | chr2.1:27526700-27526719 | MS.gene039220:intron | 45.0% | |
| TGATTGTCTTAGGGTCATCG+AGG | - | chr2.1:27527604-27527623 | MS.gene039220:CDS | 45.0% | |
| TTTGTGATGTGAACGAGCGT+AGG | - | chr2.1:27526607-27526626 | MS.gene039220:intron | 45.0% | |
| ! | ACGTAGAACCCGAAGTTTTG+GGG | + | chr2.1:27526712-27526731 | None:intergenic | 45.0% |
| ! | CACGTAGAACCCGAAGTTTT+GGG | + | chr2.1:27526713-27526732 | None:intergenic | 45.0% |
| ! | TGCAAGGTTGAAGGTTAGTC+TGG | + | chr2.1:27525752-27525771 | None:intergenic | 45.0% |
| ! | TGTGAACGAGCGTAGGATTT+TGG | - | chr2.1:27526614-27526633 | MS.gene039220:intron | 45.0% |
| ! | TTTTGCTGAAGCAGCCATGA+TGG | - | chr2.1:27526125-27526144 | MS.gene039220:intron | 45.0% |
| !! | GCAATAATGGGTGAAGGAGA+AGG | - | chr2.1:27525511-27525530 | MS.gene039220:CDS | 45.0% |
| !! | GCTGAAGCAATAATGGGTGA+AGG | - | chr2.1:27525505-27525524 | MS.gene039220:CDS | 45.0% |
| !! | GGTTTTTGGATGACTGCTCA+TGG | - | chr2.1:27528064-27528083 | MS.gene039220:CDS | 45.0% |
| AATGGCTGTCTTCCTTACCC+TGG | - | chr2.1:27527889-27527908 | MS.gene039220:intron | 50.0% | |
| ACCTTCAACCTTGCAGTGAC+TGG | - | chr2.1:27525757-27525776 | MS.gene039220:CDS | 50.0% | |
| CAAGTGTGCTATCCAAGCGA+TGG | - | chr2.1:27525641-27525660 | MS.gene039220:CDS | 50.0% | |
| CCAAGCGATGGGAATCATTG+TGG | - | chr2.1:27525653-27525672 | MS.gene039220:CDS | 50.0% | |
| CCACAATGATTCCCATCGCT+TGG | + | chr2.1:27525656-27525675 | None:intergenic | 50.0% | |
| CCTTCAACCTTGCAGTGACT+GGG | - | chr2.1:27525758-27525777 | MS.gene039220:CDS | 50.0% | |
| CTTAGAGGCCCCAAAACTTC+GGG | - | chr2.1:27526701-27526720 | MS.gene039220:intron | 50.0% | |
| TGCCTGAGAGTTGTGCAAGT+GGG | - | chr2.1:27526205-27526224 | MS.gene039220:intron | 50.0% | |
| TGTGCAAGTGGGGATGTTGT+GGG | - | chr2.1:27526216-27526235 | MS.gene039220:intron | 50.0% | |
| TTGCCTGAGAGTTGTGCAAG+TGG | - | chr2.1:27526204-27526223 | MS.gene039220:intron | 50.0% | |
| TTGTGCAAGTGGGGATGTTG+TGG | - | chr2.1:27526215-27526234 | MS.gene039220:intron | 50.0% | |
| TTGTGGCTGACACACCTACA+CGG | + | chr2.1:27527940-27527959 | None:intergenic | 50.0% | |
| ! | GCACGTAGAACCCGAAGTTT+TGG | + | chr2.1:27526714-27526733 | None:intergenic | 50.0% |
| ! | GGTCATCGAGGTTCTAGCAT+GGG | - | chr2.1:27527616-27527635 | MS.gene039220:intron | 50.0% |
| !! | TAGGGTGTTGATGGCGTACT+AGG | + | chr2.1:27527292-27527311 | None:intergenic | 50.0% |
| CCCAGTCACTGCAAGGTTGA+AGG | + | chr2.1:27525761-27525780 | None:intergenic | 55.0% | |
| GCCTGAGAGTTGTGCAAGTG+GGG | - | chr2.1:27526206-27526225 | MS.gene039220:intron | 55.0% | |
| GGCTGAAAAGAGACCCGTGT+AGG | - | chr2.1:27527923-27527942 | MS.gene039220:intron | 55.0% | |
| GTGCAAGTGGGGATGTTGTG+GGG | - | chr2.1:27526217-27526236 | MS.gene039220:intron | 55.0% | |
| TACGTTGCCCAGTCACTGCA+AGG | + | chr2.1:27525768-27525787 | None:intergenic | 55.0% | |
| TCCCCACTTGCACAACTCTC+AGG | + | chr2.1:27526210-27526229 | None:intergenic | 55.0% | |
| TGCAGTGACTGGGCAACGTA+AGG | - | chr2.1:27525768-27525787 | MS.gene039220:CDS | 55.0% | |
| TGTGGCTGACACACCTACAC+GGG | + | chr2.1:27527939-27527958 | None:intergenic | 55.0% | |
| ! | GGGTCATCGAGGTTCTAGCA+TGG | - | chr2.1:27527615-27527634 | MS.gene039220:intron | 55.0% |
| CAAGTGGGGATGTTGTGGGG+TGG | - | chr2.1:27526220-27526239 | MS.gene039220:intron | 60.0% | |
| GGGATGTTGTGGGGTGGATG+AGG | - | chr2.1:27526226-27526245 | MS.gene039220:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.1 | gene | 27525502 | 27528224 | 27525502 | ID=MS.gene039220 |
| chr2.1 | mRNA | 27525502 | 27528224 | 27525502 | ID=MS.gene039220.t1;Parent=MS.gene039220 |
| chr2.1 | exon | 27527937 | 27528224 | 27527937 | ID=MS.gene039220.t1.exon1;Parent=MS.gene039220.t1 |
| chr2.1 | CDS | 27527937 | 27528224 | 27527937 | ID=cds.MS.gene039220.t1;Parent=MS.gene039220.t1 |
| chr2.1 | exon | 27526896 | 27527624 | 27526896 | ID=MS.gene039220.t1.exon2;Parent=MS.gene039220.t1 |
| chr2.1 | CDS | 27526896 | 27527624 | 27526896 | ID=cds.MS.gene039220.t1;Parent=MS.gene039220.t1 |
| chr2.1 | exon | 27525961 | 27526110 | 27525961 | ID=MS.gene039220.t1.exon3;Parent=MS.gene039220.t1 |
| chr2.1 | CDS | 27525961 | 27526110 | 27525961 | ID=cds.MS.gene039220.t1;Parent=MS.gene039220.t1 |
| chr2.1 | exon | 27525502 | 27525867 | 27525502 | ID=MS.gene039220.t1.exon4;Parent=MS.gene039220.t1 |
| chr2.1 | CDS | 27525502 | 27525867 | 27525502 | ID=cds.MS.gene039220.t1;Parent=MS.gene039220.t1 |
| Gene Sequence |
| Protein sequence |
