Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51793.t1 | PNX80938.1 | 63.1 | 236 | 75 | 3 | 1 | 234 | 102 | 327 | 2.40E-71 | 278.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51793.t1 | Q3E944 | 36.3 | 102 | 61 | 2 | 18 | 119 | 109 | 206 | 1.8e-06 | 54.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51793.t1 | A0A2K3LQX5 | 63.1 | 236 | 75 | 3 | 1 | 234 | 102 | 327 | 1.7e-71 | 278.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51793.t1 | MTR_3g107120 | 42.152 | 223 | 111 | 8 | 13 | 233 | 113 | 319 | 4.54e-35 | 129 |
| MS.gene51793.t1 | MTR_3g107160 | 45.070 | 213 | 94 | 10 | 14 | 220 | 104 | 299 | 5.38e-34 | 126 |
| MS.gene51793.t1 | MTR_3g107100 | 43.192 | 213 | 96 | 8 | 13 | 217 | 101 | 296 | 6.80e-33 | 124 |
| MS.gene51793.t1 | MTR_2g007450 | 38.431 | 255 | 111 | 13 | 8 | 230 | 109 | 349 | 4.46e-31 | 119 |
| MS.gene51793.t1 | MTR_1g053025 | 38.912 | 239 | 113 | 12 | 9 | 230 | 96 | 318 | 5.03e-31 | 118 |
| MS.gene51793.t1 | MTR_7g056280 | 46.763 | 139 | 65 | 3 | 96 | 233 | 367 | 497 | 9.31e-30 | 117 |
| MS.gene51793.t1 | MTR_2g008320 | 42.424 | 198 | 91 | 6 | 37 | 226 | 167 | 349 | 6.90e-28 | 110 |
| MS.gene51793.t1 | MTR_2g008310 | 44.068 | 177 | 88 | 5 | 37 | 212 | 113 | 279 | 1.40e-26 | 106 |
| MS.gene51793.t1 | MTR_2g007400 | 40.000 | 215 | 104 | 11 | 12 | 217 | 108 | 306 | 1.52e-25 | 103 |
| MS.gene51793.t1 | MTR_2g007500 | 37.615 | 218 | 117 | 7 | 9 | 217 | 86 | 293 | 3.40e-25 | 102 |
| MS.gene51793.t1 | MTR_5g083890 | 34.263 | 251 | 135 | 9 | 9 | 249 | 101 | 331 | 6.16e-25 | 103 |
| MS.gene51793.t1 | MTR_2g005990 | 35.498 | 231 | 123 | 11 | 18 | 239 | 108 | 321 | 1.09e-23 | 99.0 |
| MS.gene51793.t1 | MTR_3g099830 | 40.341 | 176 | 89 | 5 | 41 | 216 | 116 | 275 | 4.28e-23 | 97.1 |
| MS.gene51793.t1 | MTR_4g098590 | 36.530 | 219 | 115 | 7 | 8 | 217 | 89 | 292 | 4.82e-22 | 94.0 |
| MS.gene51793.t1 | MTR_2g007360 | 39.594 | 197 | 95 | 8 | 41 | 231 | 104 | 282 | 1.15e-21 | 92.8 |
| MS.gene51793.t1 | MTR_7g075820 | 36.652 | 221 | 114 | 8 | 16 | 227 | 115 | 318 | 6.99e-21 | 90.9 |
| MS.gene51793.t1 | MTR_3g026920 | 32.653 | 245 | 101 | 10 | 13 | 224 | 119 | 332 | 5.07e-20 | 88.6 |
| MS.gene51793.t1 | MTR_1g107385 | 40.000 | 180 | 89 | 9 | 41 | 216 | 164 | 328 | 2.20e-19 | 87.0 |
| MS.gene51793.t1 | MTR_7g075800 | 31.111 | 225 | 129 | 9 | 13 | 216 | 99 | 318 | 2.64e-19 | 87.4 |
| MS.gene51793.t1 | MTR_7g055943 | 33.333 | 216 | 122 | 11 | 16 | 226 | 137 | 335 | 1.92e-18 | 84.3 |
| MS.gene51793.t1 | MTR_7g007340 | 37.297 | 185 | 93 | 7 | 34 | 216 | 99 | 262 | 6.38e-18 | 82.4 |
| MS.gene51793.t1 | MTR_7g007370 | 32.394 | 213 | 126 | 5 | 20 | 230 | 71 | 267 | 1.45e-17 | 81.3 |
| MS.gene51793.t1 | MTR_0009s0080 | 33.649 | 211 | 115 | 9 | 15 | 216 | 114 | 308 | 7.72e-17 | 79.7 |
| MS.gene51793.t1 | MTR_7g098510 | 34.529 | 223 | 114 | 11 | 17 | 226 | 108 | 311 | 2.90e-16 | 77.8 |
| MS.gene51793.t1 | MTR_7g083740 | 34.802 | 227 | 105 | 10 | 17 | 233 | 96 | 289 | 1.45e-15 | 75.9 |
| MS.gene51793.t1 | MTR_5g007410 | 31.604 | 212 | 122 | 9 | 14 | 216 | 120 | 317 | 4.11e-15 | 74.7 |
| MS.gene51793.t1 | MTR_5g031970 | 32.243 | 214 | 99 | 5 | 15 | 220 | 95 | 270 | 5.08e-15 | 73.9 |
| MS.gene51793.t1 | MTR_4g039440 | 29.333 | 225 | 129 | 12 | 14 | 226 | 123 | 329 | 1.65e-14 | 72.8 |
| MS.gene51793.t1 | MTR_5g045510 | 34.615 | 182 | 96 | 6 | 14 | 189 | 103 | 267 | 1.73e-14 | 72.4 |
| MS.gene51793.t1 | MTR_6g040270 | 31.797 | 217 | 122 | 11 | 15 | 226 | 103 | 298 | 3.35e-14 | 71.6 |
| MS.gene51793.t1 | MTR_6g022360 | 31.217 | 189 | 114 | 6 | 32 | 216 | 140 | 316 | 3.77e-14 | 71.6 |
| MS.gene51793.t1 | MTR_7g007080 | 33.846 | 195 | 108 | 6 | 43 | 230 | 129 | 309 | 5.01e-14 | 71.2 |
| MS.gene51793.t1 | MTR_5g073420 | 33.023 | 215 | 117 | 10 | 15 | 226 | 107 | 297 | 6.47e-14 | 70.9 |
| MS.gene51793.t1 | MTR_2g036470 | 32.432 | 222 | 128 | 10 | 17 | 230 | 113 | 320 | 1.78e-13 | 69.7 |
| MS.gene51793.t1 | MTR_2g007090 | 38.255 | 149 | 62 | 4 | 70 | 216 | 85 | 205 | 2.36e-13 | 68.6 |
| MS.gene51793.t1 | MTR_5g073340 | 29.834 | 181 | 108 | 6 | 43 | 216 | 102 | 270 | 4.15e-13 | 68.2 |
| MS.gene51793.t1 | MTR_7g034120 | 34.444 | 180 | 90 | 9 | 46 | 217 | 64 | 223 | 7.41e-13 | 67.4 |
| MS.gene51793.t1 | MTR_6g045333 | 28.636 | 220 | 134 | 7 | 14 | 224 | 157 | 362 | 1.04e-12 | 67.8 |
| MS.gene51793.t1 | MTR_1g066830 | 32.110 | 218 | 125 | 9 | 14 | 222 | 102 | 305 | 1.59e-12 | 67.0 |
| MS.gene51793.t1 | MTR_5g045170 | 32.227 | 211 | 118 | 8 | 15 | 216 | 106 | 300 | 1.73e-12 | 67.0 |
| MS.gene51793.t1 | MTR_1g085120 | 30.734 | 218 | 129 | 9 | 16 | 226 | 189 | 391 | 3.96e-12 | 65.9 |
| MS.gene51793.t1 | MTR_1g085120 | 30.734 | 218 | 129 | 9 | 16 | 226 | 264 | 466 | 4.06e-12 | 65.9 |
| MS.gene51793.t1 | MTR_3g040700 | 29.515 | 227 | 121 | 8 | 5 | 217 | 115 | 316 | 4.23e-12 | 65.9 |
| MS.gene51793.t1 | MTR_7g034090 | 45.455 | 88 | 40 | 3 | 141 | 222 | 147 | 232 | 4.65e-12 | 65.5 |
| MS.gene51793.t1 | MTR_5g073370 | 28.796 | 191 | 120 | 7 | 28 | 216 | 112 | 288 | 6.08e-12 | 65.1 |
| MS.gene51793.t1 | MTR_5g058100 | 28.986 | 207 | 129 | 7 | 14 | 216 | 102 | 294 | 6.49e-12 | 65.1 |
| MS.gene51793.t1 | MTR_5g076150 | 31.579 | 209 | 109 | 10 | 30 | 216 | 10 | 206 | 7.52e-12 | 63.5 |
| MS.gene51793.t1 | MTR_7g098570 | 33.486 | 218 | 123 | 11 | 17 | 226 | 110 | 313 | 9.73e-12 | 64.7 |
| MS.gene51793.t1 | MTR_7g032370 | 28.910 | 211 | 113 | 7 | 16 | 218 | 81 | 262 | 1.31e-11 | 63.9 |
| MS.gene51793.t1 | MTR_1g085120 | 31.579 | 209 | 121 | 9 | 16 | 217 | 276 | 469 | 1.57e-11 | 64.3 |
| MS.gene51793.t1 | MTR_3g106960 | 40.952 | 105 | 57 | 3 | 120 | 221 | 12 | 114 | 2.54e-11 | 62.4 |
| MS.gene51793.t1 | MTR_6g029350 | 36.879 | 141 | 69 | 7 | 95 | 231 | 1 | 125 | 3.30e-11 | 62.0 |
| MS.gene51793.t1 | MTR_3g107140 | 42.308 | 104 | 56 | 3 | 10 | 113 | 90 | 189 | 3.70e-11 | 61.2 |
| MS.gene51793.t1 | MTR_5g039470 | 29.577 | 213 | 135 | 5 | 24 | 230 | 85 | 288 | 3.77e-11 | 62.8 |
| MS.gene51793.t1 | MTR_3g036250 | 29.469 | 207 | 115 | 6 | 17 | 217 | 97 | 278 | 5.78e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51793.t1 | AT1G32375 | 30.986 | 213 | 102 | 9 | 42 | 214 | 121 | 328 | 2.19e-11 | 63.5 |
| MS.gene51793.t1 | AT1G32375 | 30.986 | 213 | 102 | 9 | 42 | 214 | 121 | 328 | 2.19e-11 | 63.5 |
Find 50 sgRNAs with CRISPR-Local
Find 175 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCGATCTAGACTTTGATTA+TGG | 0.162781 | 3.4:-15789269 | MS.gene51793:CDS |
| AACATAAAATCTAGCTGTTT+TGG | 0.186654 | 3.4:+15789332 | None:intergenic |
| GTTGATCCATTTGGCAAAAC+TGG | 0.224020 | 3.4:+15789556 | None:intergenic |
| TTTAGCTAATTGTCCAAATC+TGG | 0.275040 | 3.4:-15789306 | MS.gene51793:CDS |
| GAAAATGGTGATAGGCAATA+TGG | 0.309177 | 3.4:+15789472 | None:intergenic |
| GAGCGAGGGAAGTGATAAAA+TGG | 0.341381 | 3.4:+15789385 | None:intergenic |
| ATGAGTAAATCCTCCAGATT+TGG | 0.355373 | 3.4:+15789293 | None:intergenic |
| CGGTGAGTCTGATTCGTCTA+TGG | 0.369515 | 3.4:-15786673 | MS.gene51793:CDS |
| CATTGGAAATTGAAAATAAG+AGG | 0.371874 | 3.4:+15789157 | None:intergenic |
| AGGTATAGCTCTTGAAGCTT+AGG | 0.375693 | 3.4:+15788844 | None:intergenic |
| TAGGGTTGTGCAGCTGAAAA+TGG | 0.382799 | 3.4:+15789457 | None:intergenic |
| CTTTCATAATTTGACTCGCT+TGG | 0.395972 | 3.4:-15788923 | MS.gene51793:CDS |
| CGTGATAAATTGTAAATTGA+GGG | 0.396406 | 3.4:+15789358 | None:intergenic |
| CCGATCTAGACTTTGATTAT+GGG | 0.397510 | 3.4:-15789268 | MS.gene51793:CDS |
| ACTCTCTAAGCTCTGATTAC+GGG | 0.405702 | 3.4:-15789217 | MS.gene51793:CDS |
| TAGCACAAAGTTGATCCATT+TGG | 0.411598 | 3.4:+15789547 | None:intergenic |
| GACTCTCTAAGCTCTGATTA+CGG | 0.430320 | 3.4:-15789218 | MS.gene51793:CDS |
| TCAAGAGCTATACCTTGATC+AGG | 0.445922 | 3.4:-15788836 | MS.gene51793:intron |
| ACGTGATAAATTGTAAATTG+AGG | 0.453102 | 3.4:+15789357 | None:intergenic |
| GGTATAGCTCTTGAAGCTTA+GGG | 0.485124 | 3.4:+15788845 | None:intergenic |
| GACGCAAGTGAATCATCTAT+TGG | 0.487790 | 3.4:-15786651 | MS.gene51793:CDS |
| TCATGCCTACGTGTAGTTCA+AGG | 0.491683 | 3.4:+15789504 | None:intergenic |
| CTGGGAATGCATAGATTGAA+AGG | 0.509351 | 3.4:+15789575 | None:intergenic |
| TTGATCCATTTGGCAAAACT+GGG | 0.513120 | 3.4:+15789557 | None:intergenic |
| GAACTACACGTAGGCATGAC+GGG | 0.514279 | 3.4:-15789500 | MS.gene51793:CDS |
| ATCTTTAACAAACCTGATCA+AGG | 0.518690 | 3.4:+15788824 | None:intergenic |
| AAAATGGTGATAGGCAATAT+GGG | 0.519890 | 3.4:+15789473 | None:intergenic |
| GTGCAGCTGAAAATGGTGAT+AGG | 0.521918 | 3.4:+15789464 | None:intergenic |
| CGAGTCAAATTATGAAAGGT+AGG | 0.522982 | 3.4:+15788928 | None:intergenic |
| ATAAAATGGAAGAAAACCTA+TGG | 0.523521 | 3.4:+15789399 | None:intergenic |
| TCAACAGGCCGGCTTGAACT+CGG | 0.545053 | 3.4:-15788742 | MS.gene51793:intron |
| CCCATAATCAAAGTCTAGAT+CGG | 0.546782 | 3.4:+15789268 | None:intergenic |
| CGATCTAGACTTTGATTATG+GGG | 0.559751 | 3.4:-15789267 | MS.gene51793:CDS |
| AGCTAATTGTCCAAATCTGG+AGG | 0.561524 | 3.4:-15789303 | MS.gene51793:CDS |
| CTCTCTAAGCTCTGATTACG+GGG | 0.570265 | 3.4:-15789216 | MS.gene51793:CDS |
| TTGGTCATCCGAGTTCAAGC+CGG | 0.579497 | 3.4:+15788734 | None:intergenic |
| CAAGCGAGTCAAATTATGAA+AGG | 0.580920 | 3.4:+15788924 | None:intergenic |
| TACACGTAGGCATGACGGGT+TGG | 0.582431 | 3.4:-15789496 | MS.gene51793:CDS |
| TGAACTACACGTAGGCATGA+CGG | 0.600542 | 3.4:-15789501 | MS.gene51793:CDS |
| TCGACTCTCTCAATTATCGT+TGG | 0.604528 | 3.4:-15788897 | MS.gene51793:CDS |
| TGAACTCGGATGACCAAACG+TGG | 0.615041 | 3.4:-15788728 | MS.gene51793:CDS |
| TCGAAGCTTGAGAACCACTA+GGG | 0.626681 | 3.4:+15789439 | None:intergenic |
| CATAGACGAATCAGACTCAC+CGG | 0.628227 | 3.4:+15786674 | None:intergenic |
| TTTCAGCTGCACAACCCTAG+TGG | 0.637020 | 3.4:-15789453 | MS.gene51793:CDS |
| TCTAGACTTTGATTATGGGG+AGG | 0.642802 | 3.4:-15789264 | MS.gene51793:CDS |
| ATCGAAGCTTGAGAACCACT+AGG | 0.649390 | 3.4:+15789438 | None:intergenic |
| AACTTTGTGCTACAACGTGG+AGG | 0.661327 | 3.4:-15789536 | MS.gene51793:CDS |
| ATCAACTTTGTGCTACAACG+TGG | 0.676402 | 3.4:-15789539 | MS.gene51793:CDS |
| AACGATAATTGAGAGAGTCG+AGG | 0.681406 | 3.4:+15788899 | None:intergenic |
| GAGTGCCTTGAACTACACGT+AGG | 0.734882 | 3.4:-15789509 | MS.gene51793:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATAAAAAAAAATAAAA+AGG | + | chr3.4:15787203-15787222 | None:intergenic | 0.0% |
| !!! | TATTTTTTTTTATTTTTTTT+TGG | - | chr3.4:15787206-15787225 | MS.gene51793:intron | 0.0% |
| !!! | TTTTATTTTTTTTTGGTATT+GGG | - | chr3.4:15787213-15787232 | MS.gene51793:intron | 10.0% |
| !!! | TTTTTATTTTTTTTTGGTAT+TGG | - | chr3.4:15787212-15787231 | MS.gene51793:intron | 10.0% |
| !! | ATTGTAAAACTGAATATTAA+TGG | + | chr3.4:15788633-15788652 | None:intergenic | 15.0% |
| !! | GTAAAAGAGAAAAAATTAAA+AGG | + | chr3.4:15789036-15789055 | None:intergenic | 15.0% |
| !! | TATATAATTCTTGCAATATA+AGG | + | chr3.4:15789177-15789196 | None:intergenic | 15.0% |
| !! | AGTTTGTATTTCTTTATTGT+AGG | - | chr3.4:15787257-15787276 | MS.gene51793:intron | 20.0% |
| !! | ATGAATAAGAGAAATTTGAA+TGG | - | chr3.4:15788401-15788420 | MS.gene51793:intron | 20.0% |
| !! | CCAAACTTGTATTAAAATAA+GGG | + | chr3.4:15789454-15789473 | None:intergenic | 20.0% |
| !! | TAGAAAACTTTAATAGGATA+TGG | + | chr3.4:15788484-15788503 | None:intergenic | 20.0% |
| !! | TTTGTATAAAAGGATAAAGT+AGG | + | chr3.4:15787994-15788013 | None:intergenic | 20.0% |
| !!! | AAGGTTTTCTTAAAAAAGAA+AGG | + | chr3.4:15789017-15789036 | None:intergenic | 20.0% |
| !!! | ATAATCGATCAATTTTATGT+TGG | - | chr3.4:15789329-15789348 | MS.gene51793:CDS | 20.0% |
| ! | AAAAGACGATAAAGATAGTT+GGG | - | chr3.4:15787531-15787550 | MS.gene51793:intron | 25.0% |
| ! | ACGTGATAAATTGTAAATTG+AGG | + | chr3.4:15786877-15786896 | None:intergenic | 25.0% |
| ! | AGAAAAGAAATACAGATCAA+TGG | + | chr3.4:15787180-15787199 | None:intergenic | 25.0% |
| ! | AGCAAGACACTTAAAATAAA+TGG | + | chr3.4:15789298-15789317 | None:intergenic | 25.0% |
| ! | ATAAAATGGAAGAAAACCTA+TGG | + | chr3.4:15786835-15786854 | None:intergenic | 25.0% |
| ! | ATACAAACTGTCAAAAATCA+TGG | + | chr3.4:15787246-15787265 | None:intergenic | 25.0% |
| ! | ATATTCATTGTCAACTACAT+GGG | + | chr3.4:15788176-15788195 | None:intergenic | 25.0% |
| ! | ATCAAAAGAGAGATAAAGAA+GGG | + | chr3.4:15788060-15788079 | None:intergenic | 25.0% |
| ! | CATTGGAAATTGAAAATAAG+AGG | + | chr3.4:15787077-15787096 | None:intergenic | 25.0% |
| ! | CGTATATCATATAAGTTGTT+AGG | + | chr3.4:15788565-15788584 | None:intergenic | 25.0% |
| ! | CGTGATAAATTGTAAATTGA+GGG | + | chr3.4:15786876-15786895 | None:intergenic | 25.0% |
| ! | GATAATAGTCTTTCTATTTC+AGG | + | chr3.4:15787712-15787731 | None:intergenic | 25.0% |
| ! | GCCAAACTTGTATTAAAATA+AGG | + | chr3.4:15789455-15789474 | None:intergenic | 25.0% |
| ! | GTGTTGTAGAAAACTTTAAT+AGG | + | chr3.4:15788490-15788509 | None:intergenic | 25.0% |
| ! | TACCTTACAATTACTAGATT+TGG | - | chr3.4:15787826-15787845 | MS.gene51793:intron | 25.0% |
| ! | TATAACAAATCAATAGAGTG+TGG | + | chr3.4:15789085-15789104 | None:intergenic | 25.0% |
| ! | TATATTCATTGTCAACTACA+TGG | + | chr3.4:15788177-15788196 | None:intergenic | 25.0% |
| ! | TGCAAGAATTATATAGTTGT+TGG | - | chr3.4:15789182-15789201 | MS.gene51793:CDS | 25.0% |
| ! | TGTCAATGCATTTGTATAAA+AGG | + | chr3.4:15788004-15788023 | None:intergenic | 25.0% |
| ! | TTAATTGCGAAATGATTGAT+CGG | - | chr3.4:15788968-15788987 | MS.gene51793:intron | 25.0% |
| ! | TTGGTTTATTGGACTTAAAT+GGG | - | chr3.4:15788141-15788160 | MS.gene51793:intron | 25.0% |
| !! | AAATGATCTTTTCAAAGACT+TGG | - | chr3.4:15788122-15788141 | MS.gene51793:intron | 25.0% |
| !! | AACATAAAATCTAGCTGTTT+TGG | + | chr3.4:15786902-15786921 | None:intergenic | 25.0% |
| !! | ATGAATTTCATTTGACTTAG+TGG | - | chr3.4:15788902-15788921 | MS.gene51793:CDS | 25.0% |
| !! | GTGCTTTTGTAATTTTATTC+AGG | - | chr3.4:15789526-15789545 | MS.gene51793:CDS | 25.0% |
| !!! | ACATAAAATCTAGCTGTTTT+GGG | + | chr3.4:15786901-15786920 | None:intergenic | 25.0% |
| !!! | AGTTATATTTTGAAGAATGC+AGG | - | chr3.4:15787649-15787668 | MS.gene51793:intron | 25.0% |
| !!! | AGTTTTATGATAAGAGTGAA+AGG | - | chr3.4:15788323-15788342 | MS.gene51793:intron | 25.0% |
| !!! | CCCTTATTTTAATACAAGTT+TGG | - | chr3.4:15789451-15789470 | MS.gene51793:CDS | 25.0% |
| !!! | TTTTCAAAGACTTGGTTTAT+TGG | - | chr3.4:15788130-15788149 | MS.gene51793:intron | 25.0% |
| AAAAGGATAAAGTAGGTATG+TGG | + | chr3.4:15787987-15788006 | None:intergenic | 30.0% | |
| AAAATGGTGATAGGCAATAT+GGG | + | chr3.4:15786761-15786780 | None:intergenic | 30.0% | |
| ACATACAACTACTCATGAAA+TGG | + | chr3.4:15787898-15787917 | None:intergenic | 30.0% | |
| ACTTTACATGCATTATCAAC+AGG | - | chr3.4:15787474-15787493 | MS.gene51793:intron | 30.0% | |
| AGAAAGGAGAAAATTGCAAT+CGG | + | chr3.4:15789001-15789020 | None:intergenic | 30.0% | |
| ATCTTTAACAAACCTGATCA+AGG | + | chr3.4:15787410-15787429 | None:intergenic | 30.0% | |
| CACCAAATCTAGTAATTGTA+AGG | + | chr3.4:15787831-15787850 | None:intergenic | 30.0% | |
| CATCAAAAGAGAGATAAAGA+AGG | + | chr3.4:15788061-15788080 | None:intergenic | 30.0% | |
| CTTACAATATGGTCAAAGTT+AGG | - | chr3.4:15788217-15788236 | MS.gene51793:intron | 30.0% | |
| CTTACAATTACTAGATTTGG+TGG | - | chr3.4:15787829-15787848 | MS.gene51793:intron | 30.0% | |
| CTTGGTTTATTGGACTTAAA+TGG | - | chr3.4:15788140-15788159 | MS.gene51793:intron | 30.0% | |
| GAAAAGACGATAAAGATAGT+TGG | - | chr3.4:15787530-15787549 | MS.gene51793:intron | 30.0% | |
| TGGTTTATTGGACTTAAATG+GGG | - | chr3.4:15788142-15788161 | MS.gene51793:intron | 30.0% | |
| TGTAAGTTTACATGTTGAAG+AGG | + | chr3.4:15787749-15787768 | None:intergenic | 30.0% | |
| TTAAACTTATCATGCCCTAA+GGG | - | chr3.4:15789414-15789433 | MS.gene51793:CDS | 30.0% | |
| TTAAGCAGTTAGTTAGTAAG+AGG | - | chr3.4:15788363-15788382 | MS.gene51793:intron | 30.0% | |
| TTTAAACTTATCATGCCCTA+AGG | - | chr3.4:15789413-15789432 | MS.gene51793:CDS | 30.0% | |
| TTTAGCTAATTGTCCAAATC+TGG | - | chr3.4:15786925-15786944 | MS.gene51793:intron | 30.0% | |
| ! | AGAGTGAAAGGAAATTTGTT+AGG | - | chr3.4:15788335-15788354 | MS.gene51793:intron | 30.0% |
| ! | ATAGTCTTTCTATTTCAGGT+TGG | + | chr3.4:15787708-15787727 | None:intergenic | 30.0% |
| ! | CATGATAAGTTTAAAGTGGA+AGG | + | chr3.4:15789408-15789427 | None:intergenic | 30.0% |
| ! | CTTCTTTATCTCTCTTTTGA+TGG | - | chr3.4:15788059-15788078 | MS.gene51793:intron | 30.0% |
| ! | TTTTATTCAGGTGATACTTC+CGG | - | chr3.4:15789538-15789557 | MS.gene51793:CDS | 30.0% |
| !! | AAACTCTAAGGTGTAATGAA+AGG | + | chr3.4:15787582-15787601 | None:intergenic | 30.0% |
| !! | GAGTGAAAGGAAATTTGTTA+GGG | - | chr3.4:15788336-15788355 | MS.gene51793:intron | 30.0% |
| !!! | ACATTTTGAAGTGCTTTCAT+TGG | + | chr3.4:15787094-15787113 | None:intergenic | 30.0% |
| AAAAGAGAGATAAAGAAGGG+CGG | + | chr3.4:15788057-15788076 | None:intergenic | 35.0% | |
| AAAGCTAACAAATGCCCTTA+GGG | + | chr3.4:15789431-15789450 | None:intergenic | 35.0% | |
| AAGCTAATGAAATGACACGA+AGG | + | chr3.4:15787805-15787824 | None:intergenic | 35.0% | |
| ACCATGAGAATCTGTTACAT+TGG | - | chr3.4:15787682-15787701 | MS.gene51793:intron | 35.0% | |
| AGGGCATGATAAGTTTAAAG+TGG | + | chr3.4:15789412-15789431 | None:intergenic | 35.0% | |
| AGTTAGTAAGAGGATGGTTT+AGG | - | chr3.4:15788373-15788392 | MS.gene51793:intron | 35.0% | |
| ATGAGTAAATCCTCCAGATT+TGG | + | chr3.4:15786941-15786960 | None:intergenic | 35.0% | |
| CAAGCGAGTCAAATTATGAA+AGG | + | chr3.4:15787310-15787329 | None:intergenic | 35.0% | |
| CCCATAATCAAAGTCTAGAT+CGG | + | chr3.4:15786966-15786985 | None:intergenic | 35.0% | |
| CCGATCTAGACTTTGATTAT+GGG | - | chr3.4:15786963-15786982 | MS.gene51793:intron | 35.0% | |
| CGAGTCAAATTATGAAAGGT+AGG | + | chr3.4:15787306-15787325 | None:intergenic | 35.0% | |
| CGATCTAGACTTTGATTATG+GGG | - | chr3.4:15786964-15786983 | MS.gene51793:intron | 35.0% | |
| CTACCAAATTGTAGACGAAA+AGG | + | chr3.4:15789128-15789147 | None:intergenic | 35.0% | |
| GAAAATGGTGATAGGCAATA+TGG | + | chr3.4:15786762-15786781 | None:intergenic | 35.0% | |
| GACCATATTGTAAGCAAGTT+GGG | + | chr3.4:15788211-15788230 | None:intergenic | 35.0% | |
| GGATAGAGTAACTACTTACA+TGG | + | chr3.4:15787784-15787803 | None:intergenic | 35.0% | |
| GGCATTGCAGAATAATATCT+GGG | + | chr3.4:15787561-15787580 | None:intergenic | 35.0% | |
| TCCGATCTAGACTTTGATTA+TGG | - | chr3.4:15786962-15786981 | MS.gene51793:intron | 35.0% | |
| TCGTCTACAATTTGGTAGAT+TGG | - | chr3.4:15789130-15789149 | MS.gene51793:CDS | 35.0% | |
| TCTACAATTTGGTAGATTGG+AGG | - | chr3.4:15789133-15789152 | MS.gene51793:CDS | 35.0% | |
| TGACCATATTGTAAGCAAGT+TGG | + | chr3.4:15788212-15788231 | None:intergenic | 35.0% | |
| TGGAAAGATGGAAAACTCTA+AGG | + | chr3.4:15787594-15787613 | None:intergenic | 35.0% | |
| TTGATCCATTTGGCAAAACT+GGG | + | chr3.4:15786677-15786696 | None:intergenic | 35.0% | |
| TTTGATGCATAACCATAGGT+AGG | - | chr3.4:15787928-15787947 | MS.gene51793:intron | 35.0% | |
| ! | ACACCTTTTCGTCTACAATT+TGG | - | chr3.4:15789122-15789141 | MS.gene51793:CDS | 35.0% |
| ! | AGGCATTGCAGAATAATATC+TGG | + | chr3.4:15787562-15787581 | None:intergenic | 35.0% |
| ! | CTGATTTGATGCATAACCAT+AGG | - | chr3.4:15787924-15787943 | MS.gene51793:intron | 35.0% |
| ! | CTTTCATAATTTGACTCGCT+TGG | - | chr3.4:15787308-15787327 | MS.gene51793:intron | 35.0% |
| ! | CTTTTTCTCTGATTATGAGG+AGG | - | chr3.4:15786991-15787010 | MS.gene51793:intron | 35.0% |
| ! | GGTCTTTTTCTCTGATTATG+AGG | - | chr3.4:15786988-15787007 | MS.gene51793:intron | 35.0% |
| ! | TAGCACAAAGTTGATCCATT+TGG | + | chr3.4:15786687-15786706 | None:intergenic | 35.0% |
| !!! | AATGTGCATTTTAACTGTCG+AGG | - | chr3.4:15787126-15787145 | MS.gene51793:intron | 35.0% |
| AAATCAATAGAGTGTGGACC+TGG | + | chr3.4:15789079-15789098 | None:intergenic | 40.0% | |
| AACGATAATTGAGAGAGTCG+AGG | + | chr3.4:15787335-15787354 | None:intergenic | 40.0% | |
| ACTATTATCCTCATGCCCAA+GGG | - | chr3.4:15787723-15787742 | MS.gene51793:intron | 40.0% | |
| ACTCATGAAATGGATCAACG+TGG | + | chr3.4:15787888-15787907 | None:intergenic | 40.0% | |
| AGACGATAAAGATAGTTGGG+TGG | - | chr3.4:15787534-15787553 | MS.gene51793:intron | 40.0% | |
| AGCTAATTGTCCAAATCTGG+AGG | - | chr3.4:15786928-15786947 | MS.gene51793:intron | 40.0% | |
| AGGTATAGCTCTTGAAGCTT+AGG | + | chr3.4:15787390-15787409 | None:intergenic | 40.0% | |
| AGTAAGAGGATGGTTTAGGT+TGG | - | chr3.4:15788377-15788396 | MS.gene51793:intron | 40.0% | |
| ATCAACTTTGTGCTACAACG+TGG | - | chr3.4:15786692-15786711 | MS.gene51793:intron | 40.0% | |
| ATGAGACCAAGCAAACTGAA+AGG | + | chr3.4:15789246-15789265 | None:intergenic | 40.0% | |
| CAAAGGTTTACACTGCACAA+AGG | + | chr3.4:15788446-15788465 | None:intergenic | 40.0% | |
| CTGGGAATGCATAGATTGAA+AGG | + | chr3.4:15786659-15786678 | None:intergenic | 40.0% | |
| CTTTGTGCAGTGTAAACCTT+TGG | - | chr3.4:15788444-15788463 | MS.gene51793:intron | 40.0% | |
| GAAAGCTAACAAATGCCCTT+AGG | + | chr3.4:15789432-15789451 | None:intergenic | 40.0% | |
| GACGCAAGTGAATCATCTAT+TGG | - | chr3.4:15789580-15789599 | MS.gene51793:CDS | 40.0% | |
| GCAGTTAGTTAGTAAGAGGA+TGG | - | chr3.4:15788367-15788386 | MS.gene51793:intron | 40.0% | |
| GCCAATGTAACAGATTCTCA+TGG | + | chr3.4:15787686-15787705 | None:intergenic | 40.0% | |
| GCTTAACCTTATAGCATACC+AGG | - | chr3.4:15789058-15789077 | MS.gene51793:intron | 40.0% | |
| GGTATAGCTCTTGAAGCTTA+GGG | + | chr3.4:15787389-15787408 | None:intergenic | 40.0% | |
| GTTGATCCATTTGGCAAAAC+TGG | + | chr3.4:15786678-15786697 | None:intergenic | 40.0% | |
| TACATGCATTATCAACAGGC+CGG | - | chr3.4:15787478-15787497 | MS.gene51793:intron | 40.0% | |
| TCAAGAGCTATACCTTGATC+AGG | - | chr3.4:15787395-15787414 | MS.gene51793:intron | 40.0% | |
| TCGACTCTCTCAATTATCGT+TGG | - | chr3.4:15787334-15787353 | MS.gene51793:intron | 40.0% | |
| TCTAGACTTTGATTATGGGG+AGG | - | chr3.4:15786967-15786986 | MS.gene51793:intron | 40.0% | |
| TTCCATCTTTCCAGCTTCTT+AGG | - | chr3.4:15787601-15787620 | MS.gene51793:intron | 40.0% | |
| TTGCAATATAAGGCACACCA+TGG | + | chr3.4:15789167-15789186 | None:intergenic | 40.0% | |
| TTTGCTTGGTCTCATTAGCT+TGG | - | chr3.4:15789251-15789270 | MS.gene51793:CDS | 40.0% | |
| ! | ACTCTCTAAGCTCTGATTAC+GGG | - | chr3.4:15787014-15787033 | MS.gene51793:intron | 40.0% |
| ! | CAAGCTTCGATTTTTCTACG+TGG | - | chr3.4:15786805-15786824 | MS.gene51793:intron | 40.0% |
| ! | GACTCTCTAAGCTCTGATTA+CGG | - | chr3.4:15787013-15787032 | MS.gene51793:intron | 40.0% |
| ! | GATTGGAGGTTCTTTTTCCA+TGG | - | chr3.4:15789147-15789166 | MS.gene51793:CDS | 40.0% |
| ! | TATTGTAAGCAAGTTGGGCA+TGG | + | chr3.4:15788206-15788225 | None:intergenic | 40.0% |
| ! | TGCCCAACTTGCTTACAATA+TGG | - | chr3.4:15788206-15788225 | MS.gene51793:intron | 40.0% |
| ! | TTTTCTACGTGGTAGACCAT+AGG | - | chr3.4:15786816-15786835 | MS.gene51793:intron | 40.0% |
| !! | ACTTGAAGAGTACTAGCATC+TGG | - | chr3.4:15789218-15789237 | MS.gene51793:CDS | 40.0% |
| !! | CTTGAAGAGTACTAGCATCT+GGG | - | chr3.4:15789219-15789238 | MS.gene51793:CDS | 40.0% |
| !!! | AAATTGAGGGTTTTGAGCGA+GGG | + | chr3.4:15786863-15786882 | None:intergenic | 40.0% |
| !!! | TAAATTGAGGGTTTTGAGCG+AGG | + | chr3.4:15786864-15786883 | None:intergenic | 40.0% |
| AACTTTGTGCTACAACGTGG+AGG | - | chr3.4:15786695-15786714 | MS.gene51793:intron | 45.0% | |
| ATCGAAGCTTGAGAACCACT+AGG | + | chr3.4:15786796-15786815 | None:intergenic | 45.0% | |
| CAATTGCACGTTCCTACCTA+TGG | + | chr3.4:15787943-15787962 | None:intergenic | 45.0% | |
| CATAGACGAATCAGACTCAC+CGG | + | chr3.4:15789560-15789579 | None:intergenic | 45.0% | |
| GACTATTATCCTCATGCCCA+AGG | - | chr3.4:15787722-15787741 | MS.gene51793:intron | 45.0% | |
| GAGCGAGGGAAGTGATAAAA+TGG | + | chr3.4:15786849-15786868 | None:intergenic | 45.0% | |
| GGACAACAGAATTCTGCCAA+AGG | + | chr3.4:15788463-15788482 | None:intergenic | 45.0% | |
| GTGCAGCTGAAAATGGTGAT+AGG | + | chr3.4:15786770-15786789 | None:intergenic | 45.0% | |
| TACATGTTGAAGAGGCCCTT+GGG | + | chr3.4:15787741-15787760 | None:intergenic | 45.0% | |
| TAGGGTTGTGCAGCTGAAAA+TGG | + | chr3.4:15786777-15786796 | None:intergenic | 45.0% | |
| TCATGCCTACGTGTAGTTCA+AGG | + | chr3.4:15786730-15786749 | None:intergenic | 45.0% | |
| TCGAAGCTTGAGAACCACTA+GGG | + | chr3.4:15786795-15786814 | None:intergenic | 45.0% | |
| TGAACTACACGTAGGCATGA+CGG | - | chr3.4:15786730-15786749 | MS.gene51793:intron | 45.0% | |
| TGTGGACCTGGTATGCTATA+AGG | + | chr3.4:15789067-15789086 | None:intergenic | 45.0% | |
| TTACATGTTGAAGAGGCCCT+TGG | + | chr3.4:15787742-15787761 | None:intergenic | 45.0% | |
| ! | ATTTGCTACTAGCTGCTGAG+TGG | - | chr3.4:15788251-15788270 | MS.gene51793:intron | 45.0% |
| ! | CTCTCTAAGCTCTGATTACG+GGG | - | chr3.4:15787015-15787034 | MS.gene51793:intron | 45.0% |
| ! | GCATTCCCAGTTTTGCCAAA+TGG | - | chr3.4:15786669-15786688 | MS.gene51793:CDS | 45.0% |
| !! | CGTCTTTTCTAGTCCACGTT+TGG | + | chr3.4:15787519-15787538 | None:intergenic | 45.0% |
| ACCTTGTAGGCCTAAGAAGC+TGG | + | chr3.4:15787614-15787633 | None:intergenic | 50.0% | |
| CTAGCTGAAGCTCACCTTGT+AGG | + | chr3.4:15787627-15787646 | None:intergenic | 50.0% | |
| GAACTACACGTAGGCATGAC+GGG | - | chr3.4:15786731-15786750 | MS.gene51793:intron | 50.0% | |
| GAGTGCCTTGAACTACACGT+AGG | - | chr3.4:15786722-15786741 | MS.gene51793:intron | 50.0% | |
| GGCACATCTTACGCTATAGC+TGG | - | chr3.4:15789272-15789291 | MS.gene51793:CDS | 50.0% | |
| GGCCTAAGAAGCTGGAAAGA+TGG | + | chr3.4:15787606-15787625 | None:intergenic | 50.0% | |
| TCCAGCTTCTTAGGCCTACA+AGG | - | chr3.4:15787610-15787629 | MS.gene51793:intron | 50.0% | |
| TGAACTCGGATGACCAAACG+TGG | - | chr3.4:15787503-15787522 | MS.gene51793:intron | 50.0% | |
| TTGGTCATCCGAGTTCAAGC+CGG | + | chr3.4:15787500-15787519 | None:intergenic | 50.0% | |
| TTTCAGCTGCACAACCCTAG+TGG | - | chr3.4:15786778-15786797 | MS.gene51793:intron | 50.0% | |
| ! | CGGTGAGTCTGATTCGTCTA+TGG | - | chr3.4:15789558-15789577 | MS.gene51793:CDS | 50.0% |
| ! | CTGGGTCCTTTCAGTTTGCT+TGG | - | chr3.4:15789237-15789256 | MS.gene51793:CDS | 50.0% |
| ! | TGTAAGCAAGTTGGGCATGG+TGG | + | chr3.4:15788203-15788222 | None:intergenic | 50.0% |
| !! | TACACGTAGGCATGACGGGT+TGG | - | chr3.4:15786735-15786754 | MS.gene51793:intron | 55.0% |
| !! | TCAACAGGCCGGCTTGAACT+CGG | - | chr3.4:15787489-15787508 | MS.gene51793:intron | 55.0% |
| TGAAGAGGCCCTTGGGCATG+AGG | + | chr3.4:15787734-15787753 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 15786638 | 15789615 | 15786638 | ID=MS.gene51793 |
| chr3.4 | mRNA | 15786638 | 15789615 | 15786638 | ID=MS.gene51793.t1;Parent=MS.gene51793 |
| chr3.4 | exon | 15789106 | 15789615 | 15789106 | ID=MS.gene51793.t1.exon1;Parent=MS.gene51793.t1 |
| chr3.4 | CDS | 15789106 | 15789615 | 15789106 | ID=cds.MS.gene51793.t1;Parent=MS.gene51793.t1 |
| chr3.4 | exon | 15788837 | 15788974 | 15788837 | ID=MS.gene51793.t1.exon2;Parent=MS.gene51793.t1 |
| chr3.4 | CDS | 15788837 | 15788974 | 15788837 | ID=cds.MS.gene51793.t1;Parent=MS.gene51793.t1 |
| chr3.4 | exon | 15788706 | 15788757 | 15788706 | ID=MS.gene51793.t1.exon3;Parent=MS.gene51793.t1 |
| chr3.4 | CDS | 15788706 | 15788757 | 15788706 | ID=cds.MS.gene51793.t1;Parent=MS.gene51793.t1 |
| chr3.4 | exon | 15786638 | 15786705 | 15786638 | ID=MS.gene51793.t1.exon4;Parent=MS.gene51793.t1 |
| chr3.4 | CDS | 15786638 | 15786705 | 15786638 | ID=cds.MS.gene51793.t1;Parent=MS.gene51793.t1 |
| Gene Sequence |
| Protein sequence |
