Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene039591.t1 | XP_013458956.1 | 99.3 | 143 | 1 | 0 | 1 | 143 | 1 | 143 | 7.60E-75 | 289.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene039591.t1 | Q9SGA6 | 81.1 | 143 | 27 | 0 | 1 | 143 | 1 | 143 | 5.0e-67 | 255.0 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene039591.t1 | A0A072UT55 | 99.3 | 143 | 1 | 0 | 1 | 143 | 1 | 143 | 5.5e-75 | 289.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene039591 | MS.gene45344 | PPI |
MS.gene95758 | MS.gene039591 | PPI |
MS.gene039591 | MS.gene053443 | PPI |
MS.gene039591 | MS.gene073888 | PPI |
MS.gene039591 | MS.gene046040 | PPI |
MS.gene53517 | MS.gene039591 | PPI |
MS.gene039591 | MS.gene046251 | PPI |
MS.gene064180 | MS.gene039591 | PPI |
MS.gene039591 | MS.gene31515 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene039591.t1 | MTR_3g013635 | 99.301 | 143 | 1 | 0 | 1 | 143 | 1 | 143 | 1.93e-105 | 297 |
MS.gene039591.t1 | MTR_3g013635 | 99.301 | 143 | 1 | 0 | 1 | 143 | 1 | 143 | 1.93e-105 | 297 |
MS.gene039591.t1 | MTR_8g040740 | 88.811 | 143 | 16 | 0 | 1 | 143 | 1 | 143 | 1.63e-97 | 277 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene039591.t1 | AT5G61170 | 83.099 | 142 | 24 | 0 | 1 | 142 | 1 | 142 | 1.30e-90 | 259 |
MS.gene039591.t1 | AT3G02080 | 81.119 | 143 | 27 | 0 | 1 | 143 | 1 | 143 | 1.36e-90 | 259 |
MS.gene039591.t1 | AT5G15520 | 83.453 | 139 | 23 | 0 | 1 | 139 | 1 | 139 | 9.16e-89 | 254 |
Find 47 sgRNAs with CRISPR-Local
Find 93 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGTGAAGACTGCAAGGTTTA+AGG | 0.181111 | 3.1:+9076844 | MS.gene039591:CDS |
GGTGCATTCCAGAGGATTTA+TGG | 0.279212 | 3.1:+9077082 | MS.gene039591:CDS |
TTCCAGTGGCAGGAGGGATT+TGG | 0.312675 | 3.1:+9077517 | MS.gene039591:CDS |
TTCACAATATCTGTCCATTC+TGG | 0.341460 | 3.1:-9076827 | None:intergenic |
AGGGATTTGGACCAAGTTGC+TGG | 0.349640 | 3.1:+9077530 | MS.gene039591:CDS |
CCTTGGTGTCCATCTCAATA+AGG | 0.385015 | 3.1:-9077198 | None:intergenic |
GACTGCAAGGTTTAAGGAGT+TGG | 0.416477 | 3.1:+9076850 | MS.gene039591:CDS |
ACCCCTCAAGTAGATCTTCC+TGG | 0.431786 | 3.1:-9077047 | None:intergenic |
GTCCAAATCCCTCCTGCCAC+TGG | 0.442468 | 3.1:-9077519 | None:intergenic |
GACTTCCACCATAAATCCTC+TGG | 0.453242 | 3.1:-9077090 | None:intergenic |
ATCTACTTGAGGGGTGGACT+CGG | 0.454423 | 3.1:+9077055 | MS.gene039591:CDS |
TCTGCTCATCTCAAAAGATC+TGG | 0.481965 | 3.1:+9075910 | MS.gene039591:CDS |
GTGCCGCAGCTTCCATGGCC+AGG | 0.485644 | 3.1:+9077029 | MS.gene039591:intron |
GCTCTGACGTAGTACCAGTC+AGG | 0.489319 | 3.1:-9076884 | None:intergenic |
TAGTACCAGTCAGGGTCATA+AGG | 0.498306 | 3.1:-9076875 | None:intergenic |
TATGGTGGAAGTCAGAGAAA+TGG | 0.514768 | 3.1:+9077100 | MS.gene039591:CDS |
CAAGTAGATCTTCCTGGCCA+TGG | 0.517027 | 3.1:-9077041 | None:intergenic |
GGCCAGGAAGATCTACTTGA+GGG | 0.518439 | 3.1:+9077045 | MS.gene039591:CDS |
TTGAGGGGTGGACTCGGTGT+TGG | 0.522669 | 3.1:+9077061 | MS.gene039591:CDS |
GGAAGATCACTTCCAGTGGC+AGG | 0.522712 | 3.1:+9077507 | MS.gene039591:CDS |
AACAGTCCTTGCGGTAGCCA+TGG | 0.523894 | 3.1:-9075851 | None:intergenic |
TAACAATACGTCCAGCAACT+TGG | 0.533492 | 3.1:-9077541 | None:intergenic |
TGGCTCCTTATGACCCTGAC+TGG | 0.535373 | 3.1:+9076870 | MS.gene039591:CDS |
CCACTGCTCTTGCAGAAATG+AGG | 0.542089 | 3.1:-9077133 | None:intergenic |
GACTGGTACTACGTCAGAGC+TGG | 0.543992 | 3.1:+9076887 | MS.gene039591:CDS |
AACAGATGGAGCTTCCAGAA+TGG | 0.551656 | 3.1:+9076813 | MS.gene039591:intron |
TTGAAGAATGTGGCGAGCAA+TGG | 0.555153 | 3.1:-9077158 | None:intergenic |
GAACATGAACCTTATTGAGA+TGG | 0.561257 | 3.1:+9077189 | MS.gene039591:CDS |
CCTCATTTCTGCAAGAGCAG+TGG | 0.589477 | 3.1:+9077133 | MS.gene039591:CDS |
TCGGTGTTGGTGCATTCCAG+AGG | 0.603387 | 3.1:+9077074 | MS.gene039591:CDS |
AGATCACTTCCAGTGGCAGG+AGG | 0.615298 | 3.1:+9077510 | MS.gene039591:CDS |
CAGATATTGTGAAGACTGCA+AGG | 0.617924 | 3.1:+9076837 | MS.gene039591:CDS |
CTGCTCTTGCAGAAATGAGG+TGG | 0.621206 | 3.1:-9077130 | None:intergenic |
AGGAAGATCTACTTGAGGGG+TGG | 0.621735 | 3.1:+9077049 | MS.gene039591:CDS |
CTCTGACGTAGTACCAGTCA+GGG | 0.627550 | 3.1:-9076883 | None:intergenic |
TCATCTCAAAAGATCTGGCA+AGG | 0.635281 | 3.1:+9075915 | MS.gene039591:CDS |
GCACAACCATGGCTACCGCA+AGG | 0.635383 | 3.1:+9075845 | None:intergenic |
GATCACTTCCAGTGGCAGGA+GGG | 0.646734 | 3.1:+9077511 | MS.gene039591:CDS |
CTTATTGAGATGGACACCAA+GGG | 0.649426 | 3.1:+9077199 | MS.gene039591:CDS |
TGGCCAGGAAGATCTACTTG+AGG | 0.650322 | 3.1:+9077044 | MS.gene039591:CDS |
GGCAGGAAGATCACTTCCAG+TGG | 0.650796 | 3.1:+9077503 | MS.gene039591:CDS |
CCTTATTGAGATGGACACCA+AGG | 0.671459 | 3.1:+9077198 | MS.gene039591:CDS |
GCATTCCAGAGGATTTATGG+TGG | 0.673361 | 3.1:+9077085 | MS.gene039591:CDS |
AACATCTTGAACAGTCCTTG+CGG | 0.675305 | 3.1:-9075860 | None:intergenic |
TCTGCAACTGTTGAAGAATG+TGG | 0.679137 | 3.1:-9077168 | None:intergenic |
GCCAGGAAGATCTACTTGAG+GGG | 0.686642 | 3.1:+9077046 | MS.gene039591:CDS |
TTATTGAGATGGACACCAAG+GGG | 0.704884 | 3.1:+9077200 | MS.gene039591:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTTTTTGTTAATTTAAACAA+GGG | - | chr3.1:9076949-9076968 | None:intergenic | 10.0% |
!!! | TTTTTTTGTTAATTTAAACA+AGG | - | chr3.1:9076950-9076969 | None:intergenic | 10.0% |
!! | TAATCTATGTAATTAGAATA+AGG | - | chr3.1:9076581-9076600 | None:intergenic | 15.0% |
!!! | AAAACCAAAATGAAATTTTT+CGG | - | chr3.1:9075953-9075972 | None:intergenic | 15.0% |
!!! | ATCAAAAACATTTTTTTGTT+AGG | - | chr3.1:9076256-9076275 | None:intergenic | 15.0% |
!!! | TTAATGTTATGTTTTATGTT+AGG | + | chr3.1:9076160-9076179 | MS.gene039591:intron | 15.0% |
!!! | TTGTTTTTGTTAATCAAATT+AGG | + | chr3.1:9076457-9076476 | MS.gene039591:intron | 15.0% |
!!! | TTTTGATTTTTTTTTTGAAG+AGG | + | chr3.1:9076001-9076020 | MS.gene039591:intron | 15.0% |
!! | AACAAAAAAATAACTTTCGA+GGG | + | chr3.1:9076960-9076979 | MS.gene039591:intron | 20.0% |
!! | ATGTTAAAAACATGATATGA+AGG | - | chr3.1:9077463-9077482 | None:intergenic | 20.0% |
!! | TAACAAAAAAATAACTTTCG+AGG | + | chr3.1:9076959-9076978 | MS.gene039591:intron | 20.0% |
!! | TCTAATTACATAGATTACTT+GGG | + | chr3.1:9076584-9076603 | MS.gene039591:intron | 20.0% |
!! | TGTTAAAAACATGATATGAA+GGG | - | chr3.1:9077462-9077481 | None:intergenic | 20.0% |
!! | TTATAATGATACGAATGAAA+TGG | + | chr3.1:9076714-9076733 | MS.gene039591:intron | 20.0% |
!! | TTCTAATTACATAGATTACT+TGG | + | chr3.1:9076583-9076602 | MS.gene039591:intron | 20.0% |
!! | TTGTATAGTTCAAATTTAGT+TGG | + | chr3.1:9076745-9076764 | MS.gene039591:intron | 20.0% |
!!! | ACAAATTTTGAAAGTTCAAA+AGG | - | chr3.1:9076550-9076569 | None:intergenic | 20.0% |
!!! | ATTTGTTTTGATTTGCTTAA+CGG | + | chr3.1:9076025-9076044 | MS.gene039591:intron | 20.0% |
!!! | CAAATTTTGAAAGTTCAAAA+GGG | - | chr3.1:9076549-9076568 | None:intergenic | 20.0% |
!!! | TAACTATTTGATTTACATTG+CGG | - | chr3.1:9077313-9077332 | None:intergenic | 20.0% |
!!! | TGTTTTTGATTTGATTTGAT+TGG | + | chr3.1:9076266-9076285 | MS.gene039591:intron | 20.0% |
!!! | TTGTCAAATTAATCTGTTTT+AGG | + | chr3.1:9076060-9076079 | MS.gene039591:intron | 20.0% |
!! | GTTATGTTTTATGTTAGGTT+TGG | + | chr3.1:9076165-9076184 | MS.gene039591:intron | 25.0% |
!! | TTCACCGAAAAATTTCATTT+TGG | + | chr3.1:9075946-9075965 | MS.gene039591:intron | 25.0% |
!! | TTGATTTTTCTTTATCACAG+TGG | + | chr3.1:9077482-9077501 | MS.gene039591:intron | 25.0% |
!!! | GAACTTTCAAAATTTGTTGT+TGG | + | chr3.1:9076553-9076572 | MS.gene039591:intron | 25.0% |
!!! | GTGCTTTTATTTATAGTGAT+TGG | + | chr3.1:9077399-9077418 | MS.gene039591:intron | 25.0% |
!!! | TTTGTTTTGATTTGCTTAAC+GGG | + | chr3.1:9076026-9076045 | MS.gene039591:intron | 25.0% |
CATCTGTTCATAACAAAACA+AGG | - | chr3.1:9076801-9076820 | None:intergenic | 30.0% | |
! | ACATTGCAATTTTCAACAAC+AGG | - | chr3.1:9077002-9077021 | None:intergenic | 30.0% |
!!! | CTTGTTTTGTTATGAACAGA+TGG | + | chr3.1:9076799-9076818 | MS.gene039591:intron | 30.0% |
AACTACTGCTCAACAAATGT+TGG | - | chr3.1:9077362-9077381 | None:intergenic | 35.0% | |
GAACATGAACCTTATTGAGA+TGG | + | chr3.1:9077189-9077208 | MS.gene039591:CDS | 35.0% | |
GTTAATTTAAACAAGGGACC+AGG | - | chr3.1:9076943-9076962 | None:intergenic | 35.0% | |
TACGGTTTACAATAGGGAAT+AGG | + | chr3.1:9077251-9077270 | MS.gene039591:intron | 35.0% | |
TCAGAAAACTAGTGACATGA+TGG | + | chr3.1:9076368-9076387 | MS.gene039591:intron | 35.0% | |
TTACATAGATTACTTGGGCA+TGG | + | chr3.1:9076589-9076608 | MS.gene039591:intron | 35.0% | |
TTCACAATATCTGTCCATTC+TGG | - | chr3.1:9076830-9076849 | None:intergenic | 35.0% | |
! | TTATCTTTGTTAGCCTGCTA+CGG | + | chr3.1:9077233-9077252 | MS.gene039591:intron | 35.0% |
! | TTTTTCTTTATCACAGTGGC+AGG | + | chr3.1:9077486-9077505 | MS.gene039591:intron | 35.0% |
!! | GTTTGATTTTGTGCATTTCC+TGG | + | chr3.1:9076922-9076941 | MS.gene039591:intron | 35.0% |
AACATCTTGAACAGTCCTTG+CGG | - | chr3.1:9075863-9075882 | None:intergenic | 40.0% | |
CAGATATTGTGAAGACTGCA+AGG | + | chr3.1:9076837-9076856 | MS.gene039591:CDS | 40.0% | |
CTTATTGAGATGGACACCAA+GGG | + | chr3.1:9077199-9077218 | MS.gene039591:CDS | 40.0% | |
GATAATGAGTTCTTACCCCT+TGG | - | chr3.1:9077218-9077237 | None:intergenic | 40.0% | |
GCTCAACAAATGTTGGTATC+AGG | - | chr3.1:9077355-9077374 | None:intergenic | 40.0% | |
GTATTCAAGCTCTACTTCAC+TGG | + | chr3.1:9076680-9076699 | MS.gene039591:intron | 40.0% | |
TAACAATACGTCCAGCAACT+TGG | - | chr3.1:9077544-9077563 | None:intergenic | 40.0% | |
TCATCTCAAAAGATCTGGCA+AGG | + | chr3.1:9075915-9075934 | MS.gene039591:CDS | 40.0% | |
TCTGCAACTGTTGAAGAATG+TGG | - | chr3.1:9077171-9077190 | None:intergenic | 40.0% | |
TCTGCTCATCTCAAAAGATC+TGG | + | chr3.1:9075910-9075929 | MS.gene039591:CDS | 40.0% | |
TGTGAAGACTGCAAGGTTTA+AGG | + | chr3.1:9076844-9076863 | MS.gene039591:CDS | 40.0% | |
TTATTGAGATGGACACCAAG+GGG | + | chr3.1:9077200-9077219 | MS.gene039591:CDS | 40.0% | |
! | TATGGTGGAAGTCAGAGAAA+TGG | + | chr3.1:9077100-9077119 | MS.gene039591:CDS | 40.0% |
AACAGATGGAGCTTCCAGAA+TGG | + | chr3.1:9076813-9076832 | MS.gene039591:intron | 45.0% | |
AGCCTGCTACGGTTTACAAT+AGG | + | chr3.1:9077244-9077263 | MS.gene039591:intron | 45.0% | |
CATGGTTTCAACTCACGTGT+TGG | + | chr3.1:9076607-9076626 | MS.gene039591:intron | 45.0% | |
CCTTATTGAGATGGACACCA+AGG | + | chr3.1:9077198-9077217 | MS.gene039591:CDS | 45.0% | |
GACTGCAAGGTTTAAGGAGT+TGG | + | chr3.1:9076850-9076869 | MS.gene039591:CDS | 45.0% | |
GACTTCCACCATAAATCCTC+TGG | - | chr3.1:9077093-9077112 | None:intergenic | 45.0% | |
GCATTCCAGAGGATTTATGG+TGG | + | chr3.1:9077085-9077104 | MS.gene039591:CDS | 45.0% | |
GCCTGCTACGGTTTACAATA+GGG | + | chr3.1:9077245-9077264 | MS.gene039591:intron | 45.0% | |
GGTGCATTCCAGAGGATTTA+TGG | + | chr3.1:9077082-9077101 | MS.gene039591:CDS | 45.0% | |
TAGTACCAGTCAGGGTCATA+AGG | - | chr3.1:9076878-9076897 | None:intergenic | 45.0% | |
TCCCTATTGTAAACCGTAGC+AGG | - | chr3.1:9077249-9077268 | None:intergenic | 45.0% | |
TTGAAGAATGTGGCGAGCAA+TGG | - | chr3.1:9077161-9077180 | None:intergenic | 45.0% | |
!! | CCTTGGTGTCCATCTCAATA+AGG | - | chr3.1:9077201-9077220 | None:intergenic | 45.0% |
ACCCCTCAAGTAGATCTTCC+TGG | - | chr3.1:9077050-9077069 | None:intergenic | 50.0% | |
AGGAAGATCTACTTGAGGGG+TGG | + | chr3.1:9077049-9077068 | MS.gene039591:CDS | 50.0% | |
AGGGATTTGGACCAAGTTGC+TGG | + | chr3.1:9077530-9077549 | MS.gene039591:CDS | 50.0% | |
CAAGTAGATCTTCCTGGCCA+TGG | - | chr3.1:9077044-9077063 | None:intergenic | 50.0% | |
CCACTGCTCTTGCAGAAATG+AGG | - | chr3.1:9077136-9077155 | None:intergenic | 50.0% | |
CCTCATTTCTGCAAGAGCAG+TGG | + | chr3.1:9077133-9077152 | MS.gene039591:CDS | 50.0% | |
CTCTGACGTAGTACCAGTCA+GGG | - | chr3.1:9076886-9076905 | None:intergenic | 50.0% | |
CTGCTCTTGCAGAAATGAGG+TGG | - | chr3.1:9077133-9077152 | None:intergenic | 50.0% | |
GCCAGGAAGATCTACTTGAG+GGG | + | chr3.1:9077046-9077065 | MS.gene039591:CDS | 50.0% | |
GGCCAGGAAGATCTACTTGA+GGG | + | chr3.1:9077045-9077064 | MS.gene039591:CDS | 50.0% | |
TGGCCAGGAAGATCTACTTG+AGG | + | chr3.1:9077044-9077063 | MS.gene039591:CDS | 50.0% | |
! | ATCTACTTGAGGGGTGGACT+CGG | + | chr3.1:9077055-9077074 | MS.gene039591:CDS | 50.0% |
! | TTTTTGTGCCGCAGCTTCCA+TGG | + | chr3.1:9077024-9077043 | MS.gene039591:intron | 50.0% |
AGATCACTTCCAGTGGCAGG+AGG | + | chr3.1:9077510-9077529 | MS.gene039591:CDS | 55.0% | |
GACTGGTACTACGTCAGAGC+TGG | + | chr3.1:9076887-9076906 | MS.gene039591:CDS | 55.0% | |
GATCACTTCCAGTGGCAGGA+GGG | + | chr3.1:9077511-9077530 | MS.gene039591:CDS | 55.0% | |
GCTCTGACGTAGTACCAGTC+AGG | - | chr3.1:9076887-9076906 | None:intergenic | 55.0% | |
GGAAGATCACTTCCAGTGGC+AGG | + | chr3.1:9077507-9077526 | MS.gene039591:CDS | 55.0% | |
GGCAGGAAGATCACTTCCAG+TGG | + | chr3.1:9077503-9077522 | MS.gene039591:CDS | 55.0% | |
TGGCTCCTTATGACCCTGAC+TGG | + | chr3.1:9076870-9076889 | MS.gene039591:CDS | 55.0% | |
TTCCAGTGGCAGGAGGGATT+TGG | + | chr3.1:9077517-9077536 | MS.gene039591:CDS | 55.0% | |
!! | TCGGTGTTGGTGCATTCCAG+AGG | + | chr3.1:9077074-9077093 | MS.gene039591:CDS | 55.0% |
CTTCCTGGCCATGGAAGCTG+CGG | - | chr3.1:9077035-9077054 | None:intergenic | 60.0% | |
GTCCAAATCCCTCCTGCCAC+TGG | - | chr3.1:9077522-9077541 | None:intergenic | 60.0% | |
!! | TTGAGGGGTGGACTCGGTGT+TGG | + | chr3.1:9077061-9077080 | MS.gene039591:CDS | 60.0% |
GTGCCGCAGCTTCCATGGCC+AGG | + | chr3.1:9077029-9077048 | MS.gene039591:intron | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.1 | gene | 9075853 | 9077574 | 9075853 | ID=MS.gene039591 |
chr3.1 | mRNA | 9075853 | 9077574 | 9075853 | ID=MS.gene039591.t1;Parent=MS.gene039591 |
chr3.1 | exon | 9075853 | 9075936 | 9075853 | ID=MS.gene039591.t1.exon1;Parent=MS.gene039591.t1 |
chr3.1 | CDS | 9075853 | 9075936 | 9075853 | ID=cds.MS.gene039591.t1;Parent=MS.gene039591.t1 |
chr3.1 | exon | 9076818 | 9076908 | 9076818 | ID=MS.gene039591.t1.exon2;Parent=MS.gene039591.t1 |
chr3.1 | CDS | 9076818 | 9076908 | 9076818 | ID=cds.MS.gene039591.t1;Parent=MS.gene039591.t1 |
chr3.1 | exon | 9077038 | 9077221 | 9077038 | ID=MS.gene039591.t1.exon3;Parent=MS.gene039591.t1 |
chr3.1 | CDS | 9077038 | 9077221 | 9077038 | ID=cds.MS.gene039591.t1;Parent=MS.gene039591.t1 |
chr3.1 | exon | 9077502 | 9077574 | 9077502 | ID=MS.gene039591.t1.exon4;Parent=MS.gene039591.t1 |
chr3.1 | CDS | 9077502 | 9077574 | 9077502 | ID=cds.MS.gene039591.t1;Parent=MS.gene039591.t1 |
Gene Sequence |
Protein sequence |