AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene31515

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene31515.t1 MTR_2g090095 80.577 659 59 10 1 618 1 631 0.0 951
MS.gene31515.t1 MTR_2g090095 82.636 478 39 5 164 618 1 457 0.0 769
MS.gene31515.t1 MTR_0072s0050 49.206 378 161 8 116 489 151 501 2.71e-85 277
MS.gene31515.t1 MTR_7g116780 50.000 150 42 4 188 328 5 130 6.92e-34 125
MS.gene31515.t1 MTR_7g116810 64.706 51 11 2 261 311 15 58 2.00e-12 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene31515.t1 AT1G03530 57.868 197 75 4 119 311 336 528 6.72e-64 225

Find 209 sgRNAs with CRISPR-Local

Find 291 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCCATTCTGGTTCAATTTC+AGG 0.145362 2.4:+11009156 MS.gene31515:CDS
TTTAATCCAAATCATATTTC+TGG 0.150460 2.4:+11008958 MS.gene31515:CDS
GTCACCCTTTCCTCAGTTTC+AGG 0.178824 2.4:+11008924 MS.gene31515:CDS
GCCACTGGGCAAGGCTTTAT+TGG 0.207926 2.4:+11008475 MS.gene31515:CDS
AGAGGAGGAGGAGGGGAATC+AGG 0.230637 2.4:-11006539 None:intergenic
CACTTTGATTGCCAGATATA+TGG 0.239311 2.4:-11009101 None:intergenic
GGTTTAATTGACGAGGTCTT+TGG 0.246499 2.4:+11008067 MS.gene31515:CDS
TTTCATTCAAACCATATATC+TGG 0.273104 2.4:+11009090 MS.gene31515:CDS
TGATTTGGATTAAAATTTAT+AGG 0.273510 2.4:-11008949 None:intergenic
TGTACACAGTAACCTTTATC+TGG 0.277913 2.4:-11009304 None:intergenic
TATATGGTTTGAATGAAAAT+TGG 0.284671 2.4:-11009085 None:intergenic
TTAATGAGGGTTCTGTTCTC+TGG 0.292706 2.4:+11008020 MS.gene31515:CDS
TATTGGCAGGTTGGTTGAAT+TGG 0.294366 2.4:-11009002 None:intergenic
TGTCCACCTCTTCCGGCCAC+TGG 0.307213 2.4:+11008460 MS.gene31515:CDS
GCAGGGATGGAACCATCTTT+TGG 0.309255 2.4:-11008394 None:intergenic
TTGTACCGCACAACATAATA+TGG 0.313354 2.4:-11008103 None:intergenic
TGATGGCCAGAAATATGATT+TGG 0.320223 2.4:-11008964 None:intergenic
CCCTCCTGTGAATGTGAACT+TGG 0.323054 2.4:+11007679 MS.gene31515:CDS
AAATCATGTGCTGAATAATA+AGG 0.323769 2.4:+11008192 MS.gene31515:CDS
AATATGATTTGGATTAATAT+TGG 0.331512 2.4:-11009019 None:intergenic
AATTGGCAGGTTGGTTGAAT+TGG 0.331728 2.4:-11009068 None:intergenic
CAACTGGAGTTTGGCCAAAT+GGG 0.342466 2.4:+11008608 MS.gene31515:CDS
GTTCCCTCACGGATCCCTTC+TGG 0.344055 2.4:-11008142 None:intergenic
TGATTGCCTGCAATATGATT+TGG 0.344575 2.4:-11009030 None:intergenic
AGAGGCGACATTATTGCTAT+TGG 0.349996 2.4:+11006686 MS.gene31515:CDS
CCTCCTCCTCCTCTCGGATC+CGG 0.350386 2.4:+11006548 MS.gene31515:CDS
ATCTCTAATGATGAAATTAG+AGG 0.373131 2.4:+11006668 MS.gene31515:CDS
CATGGGATCTGCATACATAT+TGG 0.373801 2.4:-11008869 None:intergenic
GTTTAATTGACGAGGTCTTT+GGG 0.376411 2.4:+11008068 MS.gene31515:CDS
CCGGATCCGAGAGGAGGAGG+AGG 0.379986 2.4:-11006548 None:intergenic
CTGGCCATCAAGGTGGTCCT+TGG 0.386836 2.4:+11008977 MS.gene31515:CDS
ATTAATCCAAATCATATTGC+AGG 0.393716 2.4:+11009024 MS.gene31515:CDS
CTCCTCCTCCTCTCGGATCC+GGG 0.396836 2.4:+11006549 MS.gene31515:CDS
ACAACTGGAGTTTGGCCAAA+TGG 0.410185 2.4:+11008607 MS.gene31515:CDS
CCTGGTGCTTATGATGGCCC+TGG 0.412865 2.4:+11009216 MS.gene31515:CDS
TACATATTGGGCTGTCCTCC+AGG 0.413709 2.4:-11008856 None:intergenic
GTTGGCAACCAGCCAGATAA+AGG 0.413952 2.4:+11009292 MS.gene31515:CDS
CCTCTTCCGGCCACTGGGCA+AGG 0.414327 2.4:+11008466 MS.gene31515:CDS
ATGGGATCTGCATACATATT+GGG 0.415790 2.4:-11008868 None:intergenic
CCACCATTTGCATGTGGAAA+TGG 0.418543 2.4:-11008571 None:intergenic
TGGTCATTGTCCACCTCTTC+CGG 0.419041 2.4:+11008453 MS.gene31515:CDS
GATCCTCCCATTGCGTGTTC+CGG 0.422815 2.4:+11006584 MS.gene31515:CDS
TTTAATCCTGGTGCTTATGA+TGG 0.425562 2.4:+11009210 MS.gene31515:CDS
ACGTGTTTACAACTGGAGTT+TGG 0.427393 2.4:+11008599 MS.gene31515:CDS
AGGAGGAGGAGGGGAATCAG+GGG 0.433708 2.4:-11006537 None:intergenic
GAGGAGGAGGAGGGGAATCA+GGG 0.438787 2.4:-11006538 None:intergenic
GGCTTTATTGGTGTTGCCCA+TGG 0.440938 2.4:+11008487 MS.gene31515:CDS
TGATTTGGATTAATATTGGC+AGG 0.442004 2.4:-11009015 None:intergenic
GAACCAGAATGGAAATTTGA+AGG 0.450284 2.4:-11009147 None:intergenic
AACCCGGATCCGAGAGGAGG+AGG 0.454913 2.4:-11006551 None:intergenic
CCTTGCCCAGTGGCCGGAAG+AGG 0.456400 2.4:-11008466 None:intergenic
GGTCCGAACGTGTTTACAAC+TGG 0.456829 2.4:+11008592 MS.gene31515:CDS
CATCACATCCTTTCTTGTAA+AGG 0.458493 2.4:-11008216 None:intergenic
GGTGGAGGAAACCTTTGGCT+TGG 0.459766 2.4:-11008823 None:intergenic
TAATGTCGATGTTAATGAAA+TGG 0.461427 2.4:+11006709 MS.gene31515:CDS
GGAGCCAAGGACCACCTTGA+TGG 0.461642 2.4:-11008981 None:intergenic
CACCAGGATTAAACTGATGA+TGG 0.462526 2.4:-11009200 None:intergenic
AGAACAGAACCCTCATTAAG+AGG 0.463917 2.4:-11008016 None:intergenic
GGATTGAACTGCTGTTGAAA+AGG 0.465536 2.4:-11008802 None:intergenic
CACAGTAACCTTTATCTGGC+TGG 0.467400 2.4:-11009300 None:intergenic
AACTTTGATTTCCTTTGTTG+CGG 0.468102 2.4:+11008162 MS.gene31515:CDS
GCAGGTACAAAAGACATTGC+AGG 0.468416 2.4:-11008412 None:intergenic
TTTATAGGTGCCTGAAACTG+AGG 0.469238 2.4:-11008934 None:intergenic
ATCGAAATTAATGAAGGAAT+CGG 0.470211 2.4:-11006510 None:intergenic
CTGAGAGGATGGAAAACAAC+AGG 0.471484 2.4:+11008359 MS.gene31515:CDS
AACGGGCCCTTGTGCCTGCA+TGG 0.472062 2.4:-11008887 None:intergenic
GATTCCCCTCCTCCTCCTCT+CGG 0.472769 2.4:+11006542 MS.gene31515:CDS
GAAACAACTAGCTGGTGCTT+TGG 0.474726 2.4:+11006833 MS.gene31515:CDS
TGGTCGGTGGAGGAAACCTT+TGG 0.475625 2.4:-11008828 None:intergenic
CCTCCTGTGAATGTGAACTT+GGG 0.476162 2.4:+11007680 MS.gene31515:CDS
TGCCCAGTGGCCGGAAGAGG+TGG 0.478795 2.4:-11008463 None:intergenic
CCAGCAGAAAATGCTCTCCC+AGG 0.480653 2.4:-11009234 None:intergenic
CCAGGATATGTGGTCGGTGG+AGG 0.483379 2.4:-11008838 None:intergenic
AATAAGGACCTTTACAAGAA+AGG 0.489905 2.4:+11008208 MS.gene31515:CDS
GTCCACCTCTTCCGGCCACT+GGG 0.490334 2.4:+11008461 MS.gene31515:CDS
CCTCCACCGACCACATATCC+TGG 0.490474 2.4:+11008838 MS.gene31515:CDS
AAGAAAGGATGTGATGCATC+AGG 0.495509 2.4:+11008223 MS.gene31515:CDS
CGGATCCGAGAGGAGGAGGA+GGG 0.498401 2.4:-11006547 None:intergenic
TTCCATCATCAGTTTAATCC+TGG 0.500500 2.4:+11009198 MS.gene31515:CDS
GGATCCGAGAGGAGGAGGAG+GGG 0.501470 2.4:-11006546 None:intergenic
GAGTGAGAGAACTGAGAGTG+AGG 0.501481 2.4:+11006748 MS.gene31515:CDS
CCACCATTTCCACATGCAAA+TGG 0.502059 2.4:+11008568 MS.gene31515:CDS
AATCATATTGCAGGCAATCA+AGG 0.503227 2.4:+11009033 MS.gene31515:CDS
GAGGAGTATGAGTATGAAGA+AGG 0.503500 2.4:+11006767 MS.gene31515:CDS
GGCCCCAAGTTCACATTCAC+AGG 0.504563 2.4:-11007683 None:intergenic
AAATGGATAGTGATAGTAGT+TGG 0.504565 2.4:+11006726 MS.gene31515:CDS
GCACCAGCTAGTTGTTTCCT+CGG 0.506918 2.4:-11006828 None:intergenic
CCATTCCATCGAGGTGGTAG+AGG 0.507272 2.4:+11009270 MS.gene31515:CDS
ATCCGAAAATTCTGCTTCAT+CGG 0.509269 2.4:-11008269 None:intergenic
GCCGGGCCATCTGTTGCTCA+TGG 0.510832 2.4:+11008433 MS.gene31515:CDS
TACAAAAGACATTGCAGGGA+TGG 0.513382 2.4:-11008407 None:intergenic
TTCAGCACCGGAACACGCAA+TGG 0.513496 2.4:-11006591 None:intergenic
ACATTCACAGGAGGGACCCT+GGG 0.515552 2.4:-11007671 None:intergenic
CAATCAAAATACTGAGAGGA+TGG 0.517105 2.4:+11008348 MS.gene31515:CDS
TTGGATTAATATTGGCAGGT+TGG 0.517392 2.4:-11009011 None:intergenic
TGCTGTTGAAACGGTTGCAT+GGG 0.519266 2.4:-11008694 None:intergenic
TACCTGAAATTGAACCAGAA+TGG 0.519268 2.4:-11009158 None:intergenic
ACTGAAAGGCAAACACCGCT+TGG 0.519499 2.4:+11008046 MS.gene31515:CDS
TCAGCACCGGAACACGCAAT+GGG 0.519759 2.4:-11006590 None:intergenic
ACTCCAGTTGTAAACACGTT+CGG 0.520877 2.4:-11008595 None:intergenic
AATCATATTTCTGGCCATCA+AGG 0.522214 2.4:+11008967 MS.gene31515:CDS
TTGAATGAAAATTGGCAGGT+TGG 0.523007 2.4:-11009077 None:intergenic
TGAGCAACAGATGGCCCGGC+AGG 0.532744 2.4:-11008430 None:intergenic
GGTGCCTGAAACTGAGGAAA+GGG 0.533644 2.4:-11008928 None:intergenic
TTGAAACGGAATTCCTTGCA+TGG 0.534754 2.4:-11008722 None:intergenic
CTGCTGTTGAAACGGTTGCA+TGG 0.536286 2.4:-11008695 None:intergenic
GGCATAATCGAAATTAATGA+AGG 0.539321 2.4:-11006516 None:intergenic
GGGCTGTCCTCCAGGATATG+TGG 0.539903 2.4:-11008848 None:intergenic
ACGGGCCCTTGTGCCTGCAT+GGG 0.541224 2.4:-11008886 None:intergenic
AAGCAAGTTCCTCCAAAAGA+TGG 0.541590 2.4:+11008382 MS.gene31515:CDS
AACTGGAGTTTGGCCAAATG+GGG 0.541808 2.4:+11008609 MS.gene31515:CDS
TGGTTTGAATGAAAATTGGC+AGG 0.543466 2.4:-11009081 None:intergenic
ATAAAGCCTTGCCCAGTGGC+CGG 0.544535 2.4:-11008472 None:intergenic
ACCATGAGCAACAGATGGCC+CGG 0.545436 2.4:-11008434 None:intergenic
CTGTTCTCTGGATTACTGAA+AGG 0.547726 2.4:+11008032 MS.gene31515:CDS
CCTCTACCACCTCGATGGAA+TGG 0.547775 2.4:-11009270 None:intergenic
GGCCCGTTAATCAAAATCAA+TGG 0.548168 2.4:+11008902 MS.gene31515:CDS
CACATTCACAGGAGGGACCC+TGG 0.549353 2.4:-11007672 None:intergenic
GGTGCTCGAGTCATTGTCGA+AGG 0.550842 2.4:+11007977 MS.gene31515:CDS
CACGCAATGGGAGGATCCGA+AGG 0.552400 2.4:-11006578 None:intergenic
GAACATTGCAGAATCTCCCC+AGG 0.553713 2.4:+11007654 MS.gene31515:intron
TTGAAGCGGAATTCCTTGCA+TGG 0.554850 2.4:-11008755 None:intergenic
GGTTGGTTGAATTGGAGAGA+AGG 0.556489 2.4:-11009060 None:intergenic
ATGGGCAACTGCTGTTGAAA+CGG 0.557814 2.4:-11008703 None:intergenic
GAAGCATGACCCTCTTAATG+AGG 0.558586 2.4:+11008006 MS.gene31515:CDS
ATGGGCAACTGCTGTTGAAA+CGG 0.561216 2.4:-11008736 None:intergenic
TGAAAAGGAATTCCTTGCAT+GGG 0.562221 2.4:-11008787 None:intergenic
CTTTGTCTAGTGCATGAAAG+AGG 0.563610 2.4:-11008520 None:intergenic
AACCAGAATGGAAATTTGAA+GGG 0.563662 2.4:-11009146 None:intergenic
CCAGGGCCATCATAAGCACC+AGG 0.564364 2.4:-11009216 None:intergenic
ACTAGCTGGTGCTTTGGTGT+TGG 0.566346 2.4:+11006839 MS.gene31515:CDS
TTGAAAAGGAATTCCTTGCA+TGG 0.567640 2.4:-11008788 None:intergenic
CAACAGCAGTTGCCCATGCA+AGG 0.569363 2.4:+11008709 MS.gene31515:CDS
CAACAGCAGTTGCCCATGCA+AGG 0.569363 2.4:+11008742 MS.gene31515:CDS
CTGGTGCTTATGATGGCCCT+GGG 0.569668 2.4:+11009217 MS.gene31515:CDS
GGTTGGTTGAATTGGAGCCA+AGG 0.570097 2.4:-11008994 None:intergenic
CGGCAAAGACAAAATAAAAG+AGG 0.578196 2.4:+11008319 MS.gene31515:CDS
TCCATCGAGGTGGTAGAGGT+TGG 0.578307 2.4:+11009274 MS.gene31515:CDS
CAGCAGAAAATGCTCTCCCA+GGG 0.578394 2.4:-11009233 None:intergenic
TATGTATGCAGATCCCATGC+AGG 0.579445 2.4:+11008873 MS.gene31515:CDS
GCAGATCCCATGCAGGCACA+AGG 0.584809 2.4:+11008880 MS.gene31515:CDS
AGGATCCGAAGGAGAAAACC+CGG 0.588406 2.4:-11006567 None:intergenic
ATTTACAAACTCCGCAACAA+AGG 0.589223 2.4:-11008173 None:intergenic
CTCCTGTGAATGTGAACTTG+GGG 0.590718 2.4:+11007681 MS.gene31515:CDS
CAGGTACAAAAGACATTGCA+GGG 0.593958 2.4:-11008411 None:intergenic
AAAATCCATATTATGTTGTG+CGG 0.594145 2.4:+11008098 MS.gene31515:CDS
GTGCTCGAGTCATTGTCGAA+GGG 0.594491 2.4:+11007978 MS.gene31515:CDS
GATGATCAGTCTCAGTCTCA+AGG 0.594835 2.4:+11006872 MS.gene31515:CDS
TGAAACGGAATTCCTTGCAT+GGG 0.595128 2.4:-11008721 None:intergenic
TGAAGCGGAATTCCTTGCAT+GGG 0.595128 2.4:-11008754 None:intergenic
CCATTTGCATGTGGAAATGG+TGG 0.596195 2.4:-11008568 None:intergenic
TACAGATGTAACAACTCCCA+CGG 0.596433 2.4:-11007723 None:intergenic
CAATGACCATGAGCAACAGA+TGG 0.597589 2.4:-11008439 None:intergenic
GAAAACCCGGATCCGAGAGG+AGG 0.598248 2.4:-11006554 None:intergenic
CATATATCTGGCAATCAAAG+TGG 0.600191 2.4:+11009102 MS.gene31515:CDS
AGCAGTTCAATCCAAGCCAA+AGG 0.600624 2.4:+11008812 MS.gene31515:CDS
CAGATCCCATGCAGGCACAA+GGG 0.601992 2.4:+11008881 MS.gene31515:CDS
GAACAGAACCCTCATTAAGA+GGG 0.602379 2.4:-11008015 None:intergenic
ACATCATAAAATGCTGCCCG+TGG 0.602718 2.4:+11007706 MS.gene31515:CDS
AAGAGGCTGAGTACAAGAGA+CGG 0.602917 2.4:+11008299 MS.gene31515:CDS
ATTCCGAGGAAACAACTAGC+TGG 0.603770 2.4:+11006825 MS.gene31515:CDS
ATCAGGTCAGTATGATGAAG+AGG 0.605470 2.4:+11008240 MS.gene31515:CDS
TGTCCTCCAGGATATGTGGT+CGG 0.607010 2.4:-11008844 None:intergenic
GCCAACCTCTACCACCTCGA+TGG 0.607376 2.4:-11009275 None:intergenic
AGGTGCCTGAAACTGAGGAA+AGG 0.609140 2.4:-11008929 None:intergenic
GATGGAATGGTCTTCTCCCA+CGG 0.609973 2.4:-11009257 None:intergenic
GGACACATTGCAGACTGTTG+TGG 0.610778 2.4:-11008643 None:intergenic
TTCGGACCACCATTTGCATG+TGG 0.616322 2.4:-11008577 None:intergenic
TGAAGATAAAGATGATTCCG+AGG 0.616398 2.4:+11006811 MS.gene31515:CDS
CCTCCAGGATATGTGGTCGG+TGG 0.616580 2.4:-11008841 None:intergenic
AAGTAGAACGAACGAGCTTG+AGG 0.617815 2.4:+11006895 MS.gene31515:CDS
TGCTCGAGTCATTGTCGAAG+GGG 0.618768 2.4:+11007979 MS.gene31515:CDS
ACTGGAGTTTGGCCAAATGG+GGG 0.620207 2.4:+11008610 MS.gene31515:CDS
CAACAGCAGTTACCCATGCA+AGG 0.622521 2.4:+11008775 MS.gene31515:CDS
AAAGAGGTGAAGAATGACCA+TGG 0.622585 2.4:-11008504 None:intergenic
GTGCCAGAAGGGATCCGTGA+GGG 0.625618 2.4:+11008139 MS.gene31515:CDS
ACCGCTTGGTTTAATTGACG+AGG 0.630249 2.4:+11008060 MS.gene31515:CDS
CTGGAGTTTGGCCAAATGGG+GGG 0.630846 2.4:+11008611 MS.gene31515:CDS
ACCAGAATGGAAATTTGAAG+GGG 0.633265 2.4:-11009145 None:intergenic
TGAAGTTAATGAAAATGTCG+AGG 0.634438 2.4:+11006616 MS.gene31515:CDS
ACCAATAAAGCCTTGCCCAG+TGG 0.634526 2.4:-11008476 None:intergenic
CCATTTCCACATGCAAATGG+TGG 0.637350 2.4:+11008571 MS.gene31515:CDS
GCACCGGAACACGCAATGGG+AGG 0.637468 2.4:-11006587 None:intergenic
CCCAAGTTCACATTCACAGG+AGG 0.638125 2.4:-11007680 None:intergenic
TTAAACTGATGATGGAATTG+CGG 0.640615 2.4:-11009192 None:intergenic
AAGCATGACCCTCTTAATGA+GGG 0.640704 2.4:+11008007 MS.gene31515:CDS
AGGAAATCAAAGTTCCCTCA+CGG 0.645870 2.4:-11008153 None:intergenic
ACCTCGTCAATTAAACCAAG+CGG 0.646197 2.4:-11008061 None:intergenic
CATCATAAAATGCTGCCCGT+GGG 0.646607 2.4:+11007707 MS.gene31515:CDS
ACAGATGTAACAACTCCCAC+GGG 0.646933 2.4:-11007722 None:intergenic
AAGAGGTGAAGAATGACCAT+GGG 0.648584 2.4:-11008503 None:intergenic
TCGAGTCATTGTCGAAGGGG+TGG 0.648942 2.4:+11007982 MS.gene31515:CDS
CATATTTCTGGCCATCAAGG+TGG 0.666920 2.4:+11008970 MS.gene31515:CDS
AACTGATGATGGAATTGCGG+AGG 0.668506 2.4:-11009189 None:intergenic
AGGTCAGTATGATGAAGAGG+TGG 0.669017 2.4:+11008243 MS.gene31515:CDS
CAGAATGGAAATTTGAAGGG+GGG 0.669627 2.4:-11009143 None:intergenic
CACATTGCAGACTGTTGTGG+CGG 0.671480 2.4:-11008640 None:intergenic
AACATTGCAGAATCTCCCCA+GGG 0.673070 2.4:+11007655 MS.gene31515:intron
ATGGGTAACTGCTGTTGAAG+CGG 0.677697 2.4:-11008769 None:intergenic
CCAAGTTCACATTCACAGGA+GGG 0.680558 2.4:-11007679 None:intergenic
CCAGAATGGAAATTTGAAGG+GGG 0.681234 2.4:-11009144 None:intergenic
GGAGAAAACCCGGATCCGAG+AGG 0.682831 2.4:-11006557 None:intergenic
CATATTGCAGGCAATCAAGG+TGG 0.687959 2.4:+11009036 MS.gene31515:CDS
AGAAGACCATTCCATCGAGG+TGG 0.688058 2.4:+11009264 MS.gene31515:CDS
GAAACAATCAAAATACTGAG+AGG 0.690726 2.4:+11008344 MS.gene31515:CDS
CATTCACAGGAGGGACCCTG+GGG 0.733170 2.4:-11007670 None:intergenic
CCACCGACCACATATCCTGG+AGG 0.743701 2.4:+11008841 MS.gene31515:CDS
GGGAGAAGACCATTCCATCG+AGG 0.760370 2.4:+11009261 MS.gene31515:CDS
AGTGCCAGAAGGGATCCGTG+AGG 0.764829 2.4:+11008138 MS.gene31515:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTCAAAAAAAAAAACATTAA+GGG + chr2.4:11007550-11007569 MS.gene31515:intron 10.0%
!! AATTTAATAGTATTACTACA+AGG + chr2.4:11007882-11007901 MS.gene31515:intron 15.0%
!! ACAAAAGATAAAAACTTATA+TGG - chr2.4:11007314-11007333 None:intergenic 15.0%
!! ATTTAATAGTATTACTACAA+GGG + chr2.4:11007883-11007902 MS.gene31515:intron 15.0%
!! CTTCAAAAAAAAAAACATTA+AGG + chr2.4:11007549-11007568 MS.gene31515:intron 15.0%
!!! AATATGATTTGGATTAATAT+TGG - chr2.4:11009022-11009041 None:intergenic 15.0%
!!! TGATTTGGATTAAAATTTAT+AGG - chr2.4:11008952-11008971 None:intergenic 15.0%
!!! TTTGTATGATTTATTTTGAA+TGG + chr2.4:11006983-11007002 MS.gene31515:intron 15.0%
!! TATATGGTTTGAATGAAAAT+TGG - chr2.4:11009088-11009107 None:intergenic 20.0%
!! TTTAATAGTATTACTACAAG+GGG + chr2.4:11007884-11007903 MS.gene31515:intron 20.0%
!! TTTAATCCAAATCATATTTC+TGG + chr2.4:11008958-11008977 MS.gene31515:CDS 20.0%
!!! AATGGATTATATACTTTGAT+TGG + chr2.4:11007183-11007202 MS.gene31515:intron 20.0%
!!! TTATCTTTTGTTGTTTAATG+TGG + chr2.4:11007323-11007342 MS.gene31515:intron 20.0%
!!! TTTTTATTTTGAAGCTTTGT+TGG + chr2.4:11007256-11007275 MS.gene31515:intron 20.0%
! AAAATCCATATTATGTTGTG+CGG + chr2.4:11008098-11008117 MS.gene31515:CDS 25.0%
! AAATCATGTGCTGAATAATA+AGG + chr2.4:11008192-11008211 MS.gene31515:CDS 25.0%
! ATCGAAATTAATGAAGGAAT+CGG - chr2.4:11006513-11006532 None:intergenic 25.0%
! ATCTCTAATGATGAAATTAG+AGG + chr2.4:11006668-11006687 MS.gene31515:CDS 25.0%
! ATTAATCCAAATCATATTGC+AGG + chr2.4:11009024-11009043 MS.gene31515:CDS 25.0%
! ATTAGTGTGACTAACATTAA+AGG + chr2.4:11007409-11007428 MS.gene31515:intron 25.0%
! GCACAAATAAAAAAAAACAG+TGG - chr2.4:11007587-11007606 None:intergenic 25.0%
! TAATGTCGATGTTAATGAAA+TGG + chr2.4:11006709-11006728 MS.gene31515:CDS 25.0%
! TCCTTAGTGTTAATTTAAGT+GGG + chr2.4:11007514-11007533 MS.gene31515:intron 25.0%
! TTAATAGTATTACTACAAGG+GGG + chr2.4:11007885-11007904 MS.gene31515:intron 25.0%
! TTTCATTCAAACCATATATC+TGG + chr2.4:11009090-11009109 MS.gene31515:CDS 25.0%
!! TGAGAAATTTGAGTATTTTC+TGG - chr2.4:11008667-11008686 None:intergenic 25.0%
!!! TAACTTGTTTTACAGATTGT+TGG + chr2.4:11007956-11007975 MS.gene31515:intron 25.0%
!!! TGACCATTGATTTTGATTAA+CGG - chr2.4:11008908-11008927 None:intergenic 25.0%
!!! TGATATTTTGAGATATGAAC+AGG + chr2.4:11007037-11007056 MS.gene31515:intron 25.0%
!!! TTGTTGTTTAATGTGGTATA+TGG + chr2.4:11007330-11007349 MS.gene31515:intron 25.0%
!!! TTTATTTTGAATGGTAATGC+AGG + chr2.4:11006992-11007011 MS.gene31515:intron 25.0%
AAAAAACATTAAGGGCTATC+TGG + chr2.4:11007558-11007577 MS.gene31515:intron 30.0%
AAAAACATTAAGGGCTATCT+GGG + chr2.4:11007559-11007578 MS.gene31515:intron 30.0%
AAACTCTCTTATAAGAGATG+AGG - chr2.4:11007761-11007780 None:intergenic 30.0%
AAATGGATAGTGATAGTAGT+TGG + chr2.4:11006726-11006745 MS.gene31515:CDS 30.0%
AACCAGAATGGAAATTTGAA+GGG - chr2.4:11009149-11009168 None:intergenic 30.0%
AATAAGGACCTTTACAAGAA+AGG + chr2.4:11008208-11008227 MS.gene31515:CDS 30.0%
CTCCTTAGTGTTAATTTAAG+TGG + chr2.4:11007513-11007532 MS.gene31515:intron 30.0%
GAAACAATCAAAATACTGAG+AGG + chr2.4:11008344-11008363 MS.gene31515:CDS 30.0%
GGCATAATCGAAATTAATGA+AGG - chr2.4:11006519-11006538 None:intergenic 30.0%
TGAAGTTAATGAAAATGTCG+AGG + chr2.4:11006616-11006635 MS.gene31515:CDS 30.0%
! AACTTTGATTTCCTTTGTTG+CGG + chr2.4:11008162-11008181 MS.gene31515:CDS 30.0%
! ATTAACTTCATTTTCAGCAC+CGG - chr2.4:11006606-11006625 None:intergenic 30.0%
! TATACTTTGATTGGTTGAAC+TGG + chr2.4:11007192-11007211 MS.gene31515:intron 30.0%
! TGATTTGGATTAATATTGGC+AGG - chr2.4:11009018-11009037 None:intergenic 30.0%
!! TTAAACTGATGATGGAATTG+CGG - chr2.4:11009195-11009214 None:intergenic 30.0%
!!! ATTTTGAAGCTTTGTTGGTT+AGG + chr2.4:11007261-11007280 MS.gene31515:intron 30.0%
!!! GACCATTGATTTTGATTAAC+GGG - chr2.4:11008907-11008926 None:intergenic 30.0%
!!! TGCAAGTTTTTAGCTTCTTT+AGG + chr2.4:11007815-11007834 MS.gene31515:intron 30.0%
AAAACATTAAGGGCTATCTG+GGG + chr2.4:11007560-11007579 MS.gene31515:intron 35.0%
AATCATATTGCAGGCAATCA+AGG + chr2.4:11009033-11009052 MS.gene31515:CDS 35.0%
AATGTGGTATATGGTACATG+TGG + chr2.4:11007339-11007358 MS.gene31515:intron 35.0%
ACCAGAATGGAAATTTGAAG+GGG - chr2.4:11009148-11009167 None:intergenic 35.0%
ATCCATTCAGATTCATCTGT+TGG - chr2.4:11007170-11007189 None:intergenic 35.0%
ATCCGAAAATTCTGCTTCAT+CGG - chr2.4:11008272-11008291 None:intergenic 35.0%
ATGGGATCTGCATACATATT+GGG - chr2.4:11008871-11008890 None:intergenic 35.0%
ATTTACAAACTCCGCAACAA+AGG - chr2.4:11008176-11008195 None:intergenic 35.0%
CAATCAAAATACTGAGAGGA+TGG + chr2.4:11008348-11008367 MS.gene31515:CDS 35.0%
CACTTTGATTGCCAGATATA+TGG - chr2.4:11009104-11009123 None:intergenic 35.0%
CATATATCTGGCAATCAAAG+TGG + chr2.4:11009102-11009121 MS.gene31515:CDS 35.0%
CATCACATCCTTTCTTGTAA+AGG - chr2.4:11008219-11008238 None:intergenic 35.0%
CGGCAAAGACAAAATAAAAG+AGG + chr2.4:11008319-11008338 MS.gene31515:CDS 35.0%
GAACCAGAATGGAAATTTGA+AGG - chr2.4:11009150-11009169 None:intergenic 35.0%
GCCCACTTAAATTAACACTA+AGG - chr2.4:11007518-11007537 None:intergenic 35.0%
GTTTAATTGACGAGGTCTTT+GGG + chr2.4:11008068-11008087 MS.gene31515:CDS 35.0%
TACCTGAAATTGAACCAGAA+TGG - chr2.4:11009161-11009180 None:intergenic 35.0%
TCAGTTTAAAGACATGTGCT+TGG + chr2.4:11007095-11007114 MS.gene31515:intron 35.0%
TGAAAAGGAATTCCTTGCAT+GGG - chr2.4:11008790-11008809 None:intergenic 35.0%
TGAAGATAAAGATGATTCCG+AGG + chr2.4:11006811-11006830 MS.gene31515:CDS 35.0%
TGATGGCCAGAAATATGATT+TGG - chr2.4:11008967-11008986 None:intergenic 35.0%
TGATTGCCTGCAATATGATT+TGG - chr2.4:11009033-11009052 None:intergenic 35.0%
TGGTTTGAATGAAAATTGGC+AGG - chr2.4:11009084-11009103 None:intergenic 35.0%
TTCCATCATCAGTTTAATCC+TGG + chr2.4:11009198-11009217 MS.gene31515:CDS 35.0%
TTGAAAAGGAATTCCTTGCA+TGG - chr2.4:11008791-11008810 None:intergenic 35.0%
TTGAATGAAAATTGGCAGGT+TGG - chr2.4:11009080-11009099 None:intergenic 35.0%
TTGGATTAATATTGGCAGGT+TGG - chr2.4:11009014-11009033 None:intergenic 35.0%
TTGTACCGCACAACATAATA+TGG - chr2.4:11008106-11008125 None:intergenic 35.0%
TTTAAAGACATGTGCTTGGT+GGG + chr2.4:11007099-11007118 MS.gene31515:intron 35.0%
TTTAATCCTGGTGCTTATGA+TGG + chr2.4:11009210-11009229 MS.gene31515:CDS 35.0%
! ATTTTCGGATGATGAGAAAG+AGG + chr2.4:11008282-11008301 MS.gene31515:CDS 35.0%
!! AATCATATTTCTGGCCATCA+AGG + chr2.4:11008967-11008986 MS.gene31515:CDS 35.0%
!! ATGAAAAAGAAGTGCCAGAA+GGG + chr2.4:11008128-11008147 MS.gene31515:CDS 35.0%
!! TTCCATTCTGGTTCAATTTC+AGG + chr2.4:11009156-11009175 MS.gene31515:CDS 35.0%
!! TTTAGCTTCTTTAGGTTGCA+TGG + chr2.4:11007823-11007842 MS.gene31515:intron 35.0%
!!! CTTGCTTTTGTGCTTTTTTG+TGG + chr2.4:11007627-11007646 MS.gene31515:intron 35.0%
!!! TGCACTAGACAAAGCTTTTT+TGG + chr2.4:11008529-11008548 MS.gene31515:CDS 35.0%
AAAGAGGTGAAGAATGACCA+TGG - chr2.4:11008507-11008526 None:intergenic 40.0%
AAGAAAGGATGTGATGCATC+AGG + chr2.4:11008223-11008242 MS.gene31515:CDS 40.0%
AAGAGGTGAAGAATGACCAT+GGG - chr2.4:11008506-11008525 None:intergenic 40.0%
AAGCAAGTTCCTCCAAAAGA+TGG + chr2.4:11008382-11008401 MS.gene31515:CDS 40.0%
AAGCATGACCCTCTTAATGA+GGG + chr2.4:11008007-11008026 MS.gene31515:CDS 40.0%
ACCTCGTCAATTAAACCAAG+CGG - chr2.4:11008064-11008083 None:intergenic 40.0%
ACGTGTTTACAACTGGAGTT+TGG + chr2.4:11008599-11008618 MS.gene31515:CDS 40.0%
ACTCCAGTTGTAAACACGTT+CGG - chr2.4:11008598-11008617 None:intergenic 40.0%
AGAACAGAACCCTCATTAAG+AGG - chr2.4:11008019-11008038 None:intergenic 40.0%
AGAGGCGACATTATTGCTAT+TGG + chr2.4:11006686-11006705 MS.gene31515:CDS 40.0%
AGGAAATCAAAGTTCCCTCA+CGG - chr2.4:11008156-11008175 None:intergenic 40.0%
ATCAGGTCAGTATGATGAAG+AGG + chr2.4:11008240-11008259 MS.gene31515:CDS 40.0%
ATGCAGCAAAGTAACAGAGA+AGG - chr2.4:11007854-11007873 None:intergenic 40.0%
CACCAGGATTAAACTGATGA+TGG - chr2.4:11009203-11009222 None:intergenic 40.0%
CAGAATGGAAATTTGAAGGG+GGG - chr2.4:11009146-11009165 None:intergenic 40.0%
CAGGTACAAAAGACATTGCA+GGG - chr2.4:11008414-11008433 None:intergenic 40.0%
CATGGGATCTGCATACATAT+TGG - chr2.4:11008872-11008891 None:intergenic 40.0%
CCAGAATGGAAATTTGAAGG+GGG - chr2.4:11009147-11009166 None:intergenic 40.0%
CTGTTCTCTGGATTACTGAA+AGG + chr2.4:11008032-11008051 MS.gene31515:CDS 40.0%
CTTTGTCTAGTGCATGAAAG+AGG - chr2.4:11008523-11008542 None:intergenic 40.0%
GAACAGAACCCTCATTAAGA+GGG - chr2.4:11008018-11008037 None:intergenic 40.0%
GGATTGAACTGCTGTTGAAA+AGG - chr2.4:11008805-11008824 None:intergenic 40.0%
GGCCCGTTAATCAAAATCAA+TGG + chr2.4:11008902-11008921 MS.gene31515:CDS 40.0%
GGTTTAATTGACGAGGTCTT+TGG + chr2.4:11008067-11008086 MS.gene31515:CDS 40.0%
GGTTTGAACTTTGAATCCTG+TGG + chr2.4:11007120-11007139 MS.gene31515:intron 40.0%
GTTTAAAGACATGTGCTTGG+TGG + chr2.4:11007098-11007117 MS.gene31515:intron 40.0%
TAAAGGCTTTCAACCCACTT+GGG + chr2.4:11007426-11007445 MS.gene31515:intron 40.0%
TACAAAAGACATTGCAGGGA+TGG - chr2.4:11008410-11008429 None:intergenic 40.0%
TACAGATGTAACAACTCCCA+CGG - chr2.4:11007726-11007745 None:intergenic 40.0%
TGAAACGGAATTCCTTGCAT+GGG - chr2.4:11008724-11008743 None:intergenic 40.0%
TGCAGCAAAGTAACAGAGAA+GGG - chr2.4:11007853-11007872 None:intergenic 40.0%
TGCCAACAGATGAATCTGAA+TGG + chr2.4:11007165-11007184 MS.gene31515:intron 40.0%
TTAAAGGCTTTCAACCCACT+TGG + chr2.4:11007425-11007444 MS.gene31515:intron 40.0%
TTAATGAGGGTTCTGTTCTC+TGG + chr2.4:11008020-11008039 MS.gene31515:CDS 40.0%
TTGAAACGGAATTCCTTGCA+TGG - chr2.4:11008725-11008744 None:intergenic 40.0%
TTTATAGGTGCCTGAAACTG+AGG - chr2.4:11008937-11008956 None:intergenic 40.0%
! GAGGAGTATGAGTATGAAGA+AGG + chr2.4:11006767-11006786 MS.gene31515:CDS 40.0%
! GTCCGATGAAGCAGAATTTT+CGG + chr2.4:11008267-11008286 MS.gene31515:CDS 40.0%
! TGATTGGTTGAACTGGTTGA+AGG + chr2.4:11007199-11007218 MS.gene31515:intron 40.0%
!! AATTGGCAGGTTGGTTGAAT+TGG - chr2.4:11009071-11009090 None:intergenic 40.0%
!! CATGAAAAAGAAGTGCCAGA+AGG + chr2.4:11008127-11008146 MS.gene31515:CDS 40.0%
!! CTTCTGGCACTTCTTTTTCA+TGG - chr2.4:11008129-11008148 None:intergenic 40.0%
!! TATTGGCAGGTTGGTTGAAT+TGG - chr2.4:11009005-11009024 None:intergenic 40.0%
!! TTGAAGCTTTGTTGGTTAGG+AGG + chr2.4:11007264-11007283 MS.gene31515:intron 40.0%
AACATTGCAGAATCTCCCCA+GGG + chr2.4:11007655-11007674 MS.gene31515:intron 45.0%
AACTGGAGTTTGGCCAAATG+GGG + chr2.4:11008609-11008628 MS.gene31515:CDS 45.0%
AAGAGGCTGAGTACAAGAGA+CGG + chr2.4:11008299-11008318 MS.gene31515:CDS 45.0%
AAGTAGAACGAACGAGCTTG+AGG + chr2.4:11006895-11006914 MS.gene31515:CDS 45.0%
AATTTGAAGGGGGGCTGAAT+TGG - chr2.4:11009137-11009156 None:intergenic 45.0%
ACAACTGGAGTTTGGCCAAA+TGG + chr2.4:11008607-11008626 MS.gene31515:CDS 45.0%
ACAAGGGGGAATAGATGAGA+AGG + chr2.4:11007899-11007918 MS.gene31515:intron 45.0%
ACAGATGTAACAACTCCCAC+GGG - chr2.4:11007725-11007744 None:intergenic 45.0%
ACATCATAAAATGCTGCCCG+TGG + chr2.4:11007706-11007725 MS.gene31515:CDS 45.0%
ACCGCTTGGTTTAATTGACG+AGG + chr2.4:11008060-11008079 MS.gene31515:CDS 45.0%
AGCAGTTCAATCCAAGCCAA+AGG + chr2.4:11008812-11008831 MS.gene31515:CDS 45.0%
AGGTCAGTATGATGAAGAGG+TGG + chr2.4:11008243-11008262 MS.gene31515:CDS 45.0%
ATGGGCAACTGCTGTTGAAA+CGG - chr2.4:11008706-11008725 None:intergenic 45.0%
ATGGGTAACTGCTGTTGAAG+CGG - chr2.4:11008772-11008791 None:intergenic 45.0%
ATTCCGAGGAAACAACTAGC+TGG + chr2.4:11006825-11006844 MS.gene31515:CDS 45.0%
CAACTGGAGTTTGGCCAAAT+GGG + chr2.4:11008608-11008627 MS.gene31515:CDS 45.0%
CAAGGGGGAATAGATGAGAA+GGG + chr2.4:11007900-11007919 MS.gene31515:intron 45.0%
CAATGACCATGAGCAACAGA+TGG - chr2.4:11008442-11008461 None:intergenic 45.0%
CATATTGCAGGCAATCAAGG+TGG + chr2.4:11009036-11009055 MS.gene31515:CDS 45.0%
CATCATAAAATGCTGCCCGT+GGG + chr2.4:11007707-11007726 MS.gene31515:CDS 45.0%
CCAAGTTCACATTCACAGGA+GGG - chr2.4:11007682-11007701 None:intergenic 45.0%
CCACCATTTCCACATGCAAA+TGG + chr2.4:11008568-11008587 MS.gene31515:CDS 45.0%
CCACCATTTGCATGTGGAAA+TGG - chr2.4:11008574-11008593 None:intergenic 45.0%
CCATTTCCACATGCAAATGG+TGG + chr2.4:11008571-11008590 MS.gene31515:CDS 45.0%
CCATTTGCATGTGGAAATGG+TGG - chr2.4:11008571-11008590 None:intergenic 45.0%
CCCCCTTCAAATTTCCATTC+TGG + chr2.4:11009144-11009163 MS.gene31515:CDS 45.0%
CCTCCTGTGAATGTGAACTT+GGG + chr2.4:11007680-11007699 MS.gene31515:CDS 45.0%
CTCCTGTGAATGTGAACTTG+GGG + chr2.4:11007681-11007700 MS.gene31515:CDS 45.0%
CTGAGAGGATGGAAAACAAC+AGG + chr2.4:11008359-11008378 MS.gene31515:CDS 45.0%
GAAACAACTAGCTGGTGCTT+TGG + chr2.4:11006833-11006852 MS.gene31515:CDS 45.0%
GAAGCATGACCCTCTTAATG+AGG + chr2.4:11008006-11008025 MS.gene31515:CDS 45.0%
GAATCGAACCTAAGACCTCA+AGG - chr2.4:11007494-11007513 None:intergenic 45.0%
GATGATCAGTCTCAGTCTCA+AGG + chr2.4:11006872-11006891 MS.gene31515:CDS 45.0%
GCAGGTACAAAAGACATTGC+AGG - chr2.4:11008415-11008434 None:intergenic 45.0%
GGTTGCAACTTGCAAGATGA+AGG + chr2.4:11007360-11007379 MS.gene31515:intron 45.0%
TATGTATGCAGATCCCATGC+AGG + chr2.4:11008873-11008892 MS.gene31515:CDS 45.0%
TGAAGCGGAATTCCTTGCAT+GGG - chr2.4:11008757-11008776 None:intergenic 45.0%
TGCTGTTGAAACGGTTGCAT+GGG - chr2.4:11008697-11008716 None:intergenic 45.0%
TGGTTGAACTGGTTGAAGGT+TGG + chr2.4:11007203-11007222 MS.gene31515:intron 45.0%
TTGAAGCGGAATTCCTTGCA+TGG - chr2.4:11008758-11008777 None:intergenic 45.0%
! ACGGGCAGCATTTTATGATG+TGG - chr2.4:11007707-11007726 None:intergenic 45.0%
! CAATGTCTTTTGTACCTGCC+GGG + chr2.4:11008416-11008435 MS.gene31515:CDS 45.0%
! GCAATGTCTTTTGTACCTGC+CGG + chr2.4:11008415-11008434 MS.gene31515:CDS 45.0%
! GGTTGGTTGAATTGGAGAGA+AGG - chr2.4:11009063-11009082 None:intergenic 45.0%
! TGTTGGCACAGAAGCATAGT+GGG - chr2.4:11007153-11007172 None:intergenic 45.0%
!! AACTGATGATGGAATTGCGG+AGG - chr2.4:11009192-11009211 None:intergenic 45.0%
!! AGCTTCTTTAGGTTGCATGG+TGG + chr2.4:11007826-11007845 MS.gene31515:intron 45.0%
!! CATATTTCTGGCCATCAAGG+TGG + chr2.4:11008970-11008989 MS.gene31515:CDS 45.0%
ACCAATAAAGCCTTGCCCAG+TGG - chr2.4:11008479-11008498 None:intergenic 50.0%
ACTGAAAGGCAAACACCGCT+TGG + chr2.4:11008046-11008065 MS.gene31515:CDS 50.0%
ACTGGAGTTTGGCCAAATGG+GGG + chr2.4:11008610-11008629 MS.gene31515:CDS 50.0%
AGAAGACCATTCCATCGAGG+TGG + chr2.4:11009264-11009283 MS.gene31515:CDS 50.0%
AGGATCCGAAGGAGAAAACC+CGG - chr2.4:11006570-11006589 None:intergenic 50.0%
AGGTGCCTGAAACTGAGGAA+AGG - chr2.4:11008932-11008951 None:intergenic 50.0%
CAACAGCAGTTACCCATGCA+AGG + chr2.4:11008775-11008794 MS.gene31515:CDS 50.0%
CACATTGCAGACTGTTGTGG+CGG - chr2.4:11008643-11008662 None:intergenic 50.0%
CAGCAGAAAATGCTCTCCCA+GGG - chr2.4:11009236-11009255 None:intergenic 50.0%
CCCAAGTTCACATTCACAGG+AGG - chr2.4:11007683-11007702 None:intergenic 50.0%
CCCTCCTGTGAATGTGAACT+TGG + chr2.4:11007679-11007698 MS.gene31515:CDS 50.0%
CTGCTGTTGAAACGGTTGCA+TGG - chr2.4:11008698-11008717 None:intergenic 50.0%
GAACATTGCAGAATCTCCCC+AGG + chr2.4:11007654-11007673 MS.gene31515:intron 50.0%
GAGTGAGAGAACTGAGAGTG+AGG + chr2.4:11006748-11006767 MS.gene31515:CDS 50.0%
GATGGAATGGTCTTCTCCCA+CGG - chr2.4:11009260-11009279 None:intergenic 50.0%
GGACACATTGCAGACTGTTG+TGG - chr2.4:11008646-11008665 None:intergenic 50.0%
GGTCCGAACGTGTTTACAAC+TGG + chr2.4:11008592-11008611 MS.gene31515:CDS 50.0%
GGTGCCTGAAACTGAGGAAA+GGG - chr2.4:11008931-11008950 None:intergenic 50.0%
GTCACCCTTTCCTCAGTTTC+AGG + chr2.4:11008924-11008943 MS.gene31515:CDS 50.0%
GTGCTCGAGTCATTGTCGAA+GGG + chr2.4:11007978-11007997 MS.gene31515:CDS 50.0%
GTGCTTCTCCTTGAGGTCTT+AGG + chr2.4:11007483-11007502 MS.gene31515:intron 50.0%
TACATATTGGGCTGTCCTCC+AGG - chr2.4:11008859-11008878 None:intergenic 50.0%
TGCTCGAGTCATTGTCGAAG+GGG + chr2.4:11007979-11007998 MS.gene31515:CDS 50.0%
TGGTCATTGTCCACCTCTTC+CGG + chr2.4:11008453-11008472 MS.gene31515:CDS 50.0%
TGTCCTCCAGGATATGTGGT+CGG - chr2.4:11008847-11008866 None:intergenic 50.0%
TTCGGACCACCATTTGCATG+TGG - chr2.4:11008580-11008599 None:intergenic 50.0%
TTGGCCTAGCGGTATTAGCT+TGG + chr2.4:11007449-11007468 MS.gene31515:intron 50.0%
! ACTAGCTGGTGCTTTGGTGT+TGG + chr2.4:11006839-11006858 MS.gene31515:CDS 50.0%
! CTGTTGGCACAGAAGCATAG+TGG - chr2.4:11007154-11007173 None:intergenic 50.0%
! GCACAGAAGCATAGTGGGAT+CGG - chr2.4:11007148-11007167 None:intergenic 50.0%
! GCACCAGCTAGTTGTTTCCT+CGG - chr2.4:11006831-11006850 None:intergenic 50.0%
! GCAGGGATGGAACCATCTTT+TGG - chr2.4:11008397-11008416 None:intergenic 50.0%
! GGGATGGAACCATCTTTTGG+AGG - chr2.4:11008394-11008413 None:intergenic 50.0%
! GGTTGGTTGAATTGGAGCCA+AGG - chr2.4:11008997-11009016 None:intergenic 50.0%
! TGGCCTAGCGGTATTAGCTT+GGG + chr2.4:11007450-11007469 MS.gene31515:intron 50.0%
!! GGCTTTATTGGTGTTGCCCA+TGG + chr2.4:11008487-11008506 MS.gene31515:CDS 50.0%
ACATTCACAGGAGGGACCCT+GGG - chr2.4:11007674-11007693 None:intergenic 55.0%
ACCATGAGCAACAGATGGCC+CGG - chr2.4:11008437-11008456 None:intergenic 55.0%
ATAAAGCCTTGCCCAGTGGC+CGG - chr2.4:11008475-11008494 None:intergenic 55.0%
CAACAGCAGTTGCCCATGCA+AGG + chr2.4:11008709-11008728 MS.gene31515:CDS 55.0%
CAGATCCCATGCAGGCACAA+GGG + chr2.4:11008881-11008900 MS.gene31515:CDS 55.0%
CCAGCAGAAAATGCTCTCCC+AGG - chr2.4:11009237-11009256 None:intergenic 55.0%
CCATTCCATCGAGGTGGTAG+AGG + chr2.4:11009270-11009289 MS.gene31515:CDS 55.0%
CCTCTACCACCTCGATGGAA+TGG - chr2.4:11009273-11009292 None:intergenic 55.0%
CTGGAGTTTGGCCAAATGGG+GGG + chr2.4:11008611-11008630 MS.gene31515:CDS 55.0%
CTGGTGCTTATGATGGCCCT+GGG + chr2.4:11009217-11009236 MS.gene31515:CDS 55.0%
GATCCTCCCATTGCGTGTTC+CGG + chr2.4:11006584-11006603 MS.gene31515:CDS 55.0%
GGCCCCAAGTTCACATTCAC+AGG - chr2.4:11007686-11007705 None:intergenic 55.0%
GGCTTTCAACCCACTTGGGT+TGG + chr2.4:11007430-11007449 MS.gene31515:intron 55.0%
GGGAGAAGACCATTCCATCG+AGG + chr2.4:11009261-11009280 MS.gene31515:CDS 55.0%
GGTCCCAAGCTAATACCGCT+AGG - chr2.4:11007456-11007475 None:intergenic 55.0%
GGTGCTCGAGTCATTGTCGA+AGG + chr2.4:11007977-11007996 MS.gene31515:CDS 55.0%
GGTGGAGGAAACCTTTGGCT+TGG - chr2.4:11008826-11008845 None:intergenic 55.0%
TCCATCGAGGTGGTAGAGGT+TGG + chr2.4:11009274-11009293 MS.gene31515:CDS 55.0%
TCGAGTCATTGTCGAAGGGG+TGG + chr2.4:11007982-11008001 MS.gene31515:CDS 55.0%
TGGTCGGTGGAGGAAACCTT+TGG - chr2.4:11008831-11008850 None:intergenic 55.0%
! AGCGGTATTAGCTTGGGACC+TGG + chr2.4:11007456-11007475 MS.gene31515:intron 55.0%
! CATAGTGGGATCGGAACCAC+AGG - chr2.4:11007139-11007158 None:intergenic 55.0%
! CGGATCCGGGTTTTCTCCTT+CGG + chr2.4:11006562-11006581 MS.gene31515:CDS 55.0%
! GAGCATTTTCTGCTGGCCGT+GGG + chr2.4:11009241-11009260 MS.gene31515:CDS 55.0%
! GCCACTGGGCAAGGCTTTAT+TGG + chr2.4:11008475-11008494 MS.gene31515:CDS 55.0%
! GCGGTATTAGCTTGGGACCT+GGG + chr2.4:11007457-11007476 MS.gene31515:intron 55.0%
! TCAAGGAGAAGCACACTCCC+AGG - chr2.4:11007477-11007496 None:intergenic 55.0%
! TCAGCACCGGAACACGCAAT+GGG - chr2.4:11006593-11006612 None:intergenic 55.0%
! TGGGAGTGTGCTTCTCCTTG+AGG + chr2.4:11007476-11007495 MS.gene31515:intron 55.0%
! TTCAGCACCGGAACACGCAA+TGG - chr2.4:11006594-11006613 None:intergenic 55.0%
!! AGAGCATTTTCTGCTGGCCG+TGG + chr2.4:11009240-11009259 MS.gene31515:CDS 55.0%
!!! CCTGGGAGAGCATTTTCTGC+TGG + chr2.4:11009234-11009253 MS.gene31515:CDS 55.0%
ACCGCTAGGCCAACCCAAGT+GGG - chr2.4:11007442-11007461 None:intergenic 60.0%
AGAGGAGGAGGAGGGGAATC+AGG - chr2.4:11006542-11006561 None:intergenic 60.0%
AGGAGGAGGAGGGGAATCAG+GGG - chr2.4:11006540-11006559 None:intergenic 60.0%
AGTGCCAGAAGGGATCCGTG+AGG + chr2.4:11008138-11008157 MS.gene31515:CDS 60.0%
CACATTCACAGGAGGGACCC+TGG - chr2.4:11007675-11007694 None:intergenic 60.0%
CACGCAATGGGAGGATCCGA+AGG - chr2.4:11006581-11006600 None:intergenic 60.0%
CATTCACAGGAGGGACCCTG+GGG - chr2.4:11007673-11007692 None:intergenic 60.0%
CCACCGACCACATATCCTGG+AGG + chr2.4:11008841-11008860 MS.gene31515:CDS 60.0%
CCAGGATATGTGGTCGGTGG+AGG - chr2.4:11008841-11008860 None:intergenic 60.0%
CCAGGGCCATCATAAGCACC+AGG - chr2.4:11009219-11009238 None:intergenic 60.0%
CCTCCACCGACCACATATCC+TGG + chr2.4:11008838-11008857 MS.gene31515:CDS 60.0%
CCTCCAGGATATGTGGTCGG+TGG - chr2.4:11008844-11008863 None:intergenic 60.0%
CCTGGTGCTTATGATGGCCC+TGG + chr2.4:11009216-11009235 MS.gene31515:CDS 60.0%
CTGGCCATCAAGGTGGTCCT+TGG + chr2.4:11008977-11008996 MS.gene31515:CDS 60.0%
GAAAACCCGGATCCGAGAGG+AGG - chr2.4:11006557-11006576 None:intergenic 60.0%
GAAGGGGGGCTGAATTGGTG+AGG - chr2.4:11009132-11009151 None:intergenic 60.0%
GAGGAGGAGGAGGGGAATCA+GGG - chr2.4:11006541-11006560 None:intergenic 60.0%
GATTCCCCTCCTCCTCCTCT+CGG + chr2.4:11006542-11006561 MS.gene31515:CDS 60.0%
GCAGATCCCATGCAGGCACA+AGG + chr2.4:11008880-11008899 MS.gene31515:CDS 60.0%
GCCAACCTCTACCACCTCGA+TGG - chr2.4:11009278-11009297 None:intergenic 60.0%
GGAGAAAACCCGGATCCGAG+AGG - chr2.4:11006560-11006579 None:intergenic 60.0%
GGAGCCAAGGACCACCTTGA+TGG - chr2.4:11008984-11009003 None:intergenic 60.0%
GGGCTGTCCTCCAGGATATG+TGG - chr2.4:11008851-11008870 None:intergenic 60.0%
GTGCCAGAAGGGATCCGTGA+GGG + chr2.4:11008139-11008158 MS.gene31515:CDS 60.0%
GTTCCCTCACGGATCCCTTC+TGG - chr2.4:11008145-11008164 None:intergenic 60.0%
TACCGCTAGGCCAACCCAAG+TGG - chr2.4:11007443-11007462 None:intergenic 60.0%
!! ACCCACTTGGGTTGGCCTAG+CGG + chr2.4:11007438-11007457 MS.gene31515:intron 60.0%
AACCCGGATCCGAGAGGAGG+AGG - chr2.4:11006554-11006573 None:intergenic 65.0%
AACGGGCCCTTGTGCCTGCA+TGG - chr2.4:11008890-11008909 None:intergenic 65.0%
ACGGGCCCTTGTGCCTGCAT+GGG - chr2.4:11008889-11008908 None:intergenic 65.0%
CCTCCTCCTCCTCTCGGATC+CGG + chr2.4:11006548-11006567 MS.gene31515:CDS 65.0%
CGGATCCGAGAGGAGGAGGA+GGG - chr2.4:11006550-11006569 None:intergenic 65.0%
CTCCTCCTCCTCTCGGATCC+GGG + chr2.4:11006549-11006568 MS.gene31515:CDS 65.0%
GCACCGGAACACGCAATGGG+AGG - chr2.4:11006590-11006609 None:intergenic 65.0%
GCCGGGCCATCTGTTGCTCA+TGG + chr2.4:11008433-11008452 MS.gene31515:CDS 65.0%
GGATCCGAGAGGAGGAGGAG+GGG - chr2.4:11006549-11006568 None:intergenic 65.0%
GGGGGGCTGAATTGGTGAGG+AGG - chr2.4:11009129-11009148 None:intergenic 65.0%
GTCCACCTCTTCCGGCCACT+GGG + chr2.4:11008461-11008480 MS.gene31515:CDS 65.0%
TGAGCAACAGATGGCCCGGC+AGG - chr2.4:11008433-11008452 None:intergenic 65.0%
TGTCCACCTCTTCCGGCCAC+TGG + chr2.4:11008460-11008479 MS.gene31515:CDS 65.0%
!! GGCGGAAGTGTCCCCCCATT+TGG - chr2.4:11008625-11008644 None:intergenic 65.0%
CCGGATCCGAGAGGAGGAGG+AGG - chr2.4:11006551-11006570 None:intergenic 70.0%
CCTCTTCCGGCCACTGGGCA+AGG + chr2.4:11008466-11008485 MS.gene31515:CDS 70.0%
CCTTGCCCAGTGGCCGGAAG+AGG - chr2.4:11008469-11008488 None:intergenic 70.0%
TGCCCAGTGGCCGGAAGAGG+TGG - chr2.4:11008466-11008485 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr2.4 gene 11006479 11009311 11006479 ID=MS.gene31515
chr2.4 mRNA 11006479 11009311 11006479 ID=MS.gene31515.t1;Parent=MS.gene31515
chr2.4 exon 11006479 11006916 11006479 ID=MS.gene31515.t1.exon1;Parent=MS.gene31515.t1
chr2.4 CDS 11006479 11006916 11006479 ID=cds.MS.gene31515.t1;Parent=MS.gene31515.t1
chr2.4 exon 11007665 11007742 11007665 ID=MS.gene31515.t1.exon2;Parent=MS.gene31515.t1
chr2.4 CDS 11007665 11007742 11007665 ID=cds.MS.gene31515.t1;Parent=MS.gene31515.t1
chr2.4 exon 11007971 11009311 11007971 ID=MS.gene31515.t1.exon3;Parent=MS.gene31515.t1
chr2.4 CDS 11007971 11009311 11007971 ID=cds.MS.gene31515.t1;Parent=MS.gene31515.t1
Gene Sequence

>MS.gene31515

ATGGACAACAATGACGACGATTTCGCTCTCGCCGATTCCTTCATTAATTTCGATTATGCCCCTGATTCCCCTCCTCCTCCTCTCGGATCCGGGTTTTCTCCTTCGGATCCTCCCATTGCGTGTTCCGGTGCTGAAAATGAAGTTAATGAAAATGTCGAGGTTATTGATGCTGTTGTTAGAAGCGAGATTATCTCTAATGATGAAATTAGAGGCGACATTATTGCTATTGGTAATGTCGATGTTAATGAAATGGATAGTGATAGTAGTTGGAGTGAGAGAACTGAGAGTGAGGAGTATGAGTATGAAGAAGGCGAGATAGTTGATTCGAATTCTGAAGATAAAGATGATTCCGAGGAAACAACTAGCTGGTGCTTTGGTGTTGGCGACGACGATGATGATCAGTCTCAGTCTCAAGGAAGTAGAACGAACGAGCTTGAGGTATTGCTTTTTTACTTATTATTGTAAATTAAAATGTTTGTTCATTTGATAATACTGCAGTAAAAATTTGTATGATTTATTTTGAATGGTAATGCAGGTCATTCGTACTGATTAGATTAATGATATTTTGAGATATGAACAGGTTGATTTAGATGCTAATGATATTTTGCATATATATTCAGTTTAAAGACATGTGCTTGGTGGGTTTGAACTTTGAATCCTGTGGTTCCGATCCCACTATGCTTCTGTGCCAACAGATGAATCTGAATGGATTATATACTTTGATTGGTTGAACTGGTTGAAGGTTGGCTTTTGATCTGTTGAGTTCAGTCTTCAATATTTTTATTTTGAAGCTTTGTTGGTTAGGAGGATTGAAGAAAGTTAGATAGAATCACCATATAAGTTTTTATCTTTTGTTGTTTAATGTGGTATATGGTACATGTGGTTGCAACTTGCAAGATGAAGGTTGAGTTTTATTCTTTGTTGCTTCAGATTAGTGTGACTAACATTAAAGGCTTTCAACCCACTTGGGTTGGCCTAGCGGTATTAGCTTGGGACCTGGGAGTGTGCTTCTCCTTGAGGTCTTAGGTTCGATTCTCCTTAGTGTTAATTTAAGTGGGCTACTTTAGCTTCTTCAAAAAAAAAAACATTAAGGGCTATCTGGGGACCACTGTTTTTTTTTATTTGTGCATGTATGTTGTTAATTTTAACTTGCTTTTGTGCTTTTTTGTGGTTGTGAACATTGCAGAATCTCCCCAGGGTCCCTCCTGTGAATGTGAACTTGGGGCCACATCATAAAATGCTGCCCGTGGGAGTTGTTACATCTGTAAGATTACTGATACCTCATCTCTTATAAGAGAGTTTAAATATGCTTTCTAGTGCAAGAAAAAATGTTGATTGCAAGTTTTTAGCTTCTTTAGGTTGCATGGTGGACCCTTCTCTGTTACTTTGCTGCATTAATATTTAATTTAATAGTATTACTACAAGGGGGAATAGATGAGAAGGGATGTGAATTAGCATTGTAATCAGCTTAATCAAGTAACTTGTTTTACAGATTGTTGGTGCTCGAGTCATTGTCGAAGGGGTGGAGAAGCATGACCCTCTTAATGAGGGTTCTGTTCTCTGGATTACTGAAAGGCAAACACCGCTTGGTTTAATTGACGAGGTCTTTGGGCAAGTTAAAAATCCATATTATGTTGTGCGGTACAACCATGAAAAAGAAGTGCCAGAAGGGATCCGTGAGGGAACTTTGATTTCCTTTGTTGCGGAGTTTGTAAATCATGTGCTGAATAATAAGGACCTTTACAAGAAAGGATGTGATGCATCAGGTCAGTATGATGAAGAGGTGGTGTCCGATGAAGCAGAATTTTCGGATGATGAGAAAGAGGCTGAGTACAAGAGACGGCAAAGACAAAATAAAAGAGGTCGAAACAATCAAAATACTGAGAGGATGGAAAACAACAGGAAGCAAGTTCCTCCAAAAGATGGTTCCATCCCTGCAATGTCTTTTGTACCTGCCGGGCCATCTGTTGCTCATGGTCATTGTCCACCTCTTCCGGCCACTGGGCAAGGCTTTATTGGTGTTGCCCATGGTCATTCTTCACCTCTTTCATGCACTAGACAAAGCTTTTTTGGTGCAACTAACGTGAATCCACCATTTCCACATGCAAATGGTGGTCCGAACGTGTTTACAACTGGAGTTTGGCCAAATGGGGGGACACTTCCGCCACAACAGTCTGCAATGTGTCCAGAAAATACTCAAATTTCTCAGCAGTTGCCCATGCAACCGTTTCAACAGCAGTTGCCCATGCAAGGAATTCCGTTTCAACAGCAGTTGCCCATGCAAGGAATTCCGCTTCAACAGCAGTTACCCATGCAAGGAATTCCTTTTCAACAGCAGTTCAATCCAAGCCAAAGGTTTCCTCCACCGACCACATATCCTGGAGGACAGCCCAATATGTATGCAGATCCCATGCAGGCACAAGGGCCCGTTAATCAAAATCAATGGTCACCCTTTCCTCAGTTTCAGGCACCTATAAATTTTAATCCAAATCATATTTCTGGCCATCAAGGTGGTCCTTGGCTCCAATTCAACCAACCTGCCAATATTAATCCAAATCATATTGCAGGCAATCAAGGTGGTCCTTCTCTCCAATTCAACCAACCTGCCAATTTTCATTCAAACCATATATCTGGCAATCAAAGTGGTCCTCCTCACCAATTCAGCCCCCCTTCAAATTTCCATTCTGGTTCAATTTCAGGTAATCAGCATCCTCCGCAATTCCATCATCAGTTTAATCCTGGTGCTTATGATGGCCCTGGGAGAGCATTTTCTGCTGGCCGTGGGAGAAGACCATTCCATCGAGGTGGTAGAGGTTGGCAACCAGCCAGATAA
Protein sequence

>MS.gene31515.t1

MDNNDDDFALADSFINFDYAPDSPPPPLGSGFSPSDPPIACSGAENEVNENVEVIDAVVRSEIISNDEIRGDIIAIGNVDVNEMDSDSSWSERTESEEYEYEEGEIVDSNSEDKDDSEETTSWCFGVGDDDDDQSQSQGSRTNELENLPRVPPVNVNLGPHHKMLPVGVVTSIVGARVIVEGVEKHDPLNEGSVLWITERQTPLGLIDEVFGQVKNPYYVVRYNHEKEVPEGIREGTLISFVAEFVNHVLNNKDLYKKGCDASGQYDEEVVSDEAEFSDDEKEAEYKRRQRQNKRGRNNQNTERMENNRKQVPPKDGSIPAMSFVPAGPSVAHGHCPPLPATGQGFIGVAHGHSSPLSCTRQSFFGATNVNPPFPHANGGPNVFTTGVWPNGGTLPPQQSAMCPENTQISQQLPMQPFQQQLPMQGIPFQQQLPMQGIPLQQQLPMQGIPFQQQFNPSQRFPPPTTYPGGQPNMYADPMQAQGPVNQNQWSPFPQFQAPINFNPNHISGHQGGPWLQFNQPANINPNHIAGNQGGPSLQFNQPANFHSNHISGNQSGPPHQFSPPSNFHSGSISGNQHPPQFHHQFNPGAYDGPGRAFSAGRGRRPFHRGGRGWQPAR