Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064180.t1 | XP_013442872.1 | 89.1 | 571 | 58 | 2 | 1 | 571 | 1 | 567 | 2.30E-223 | 785 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064180.t1 | Q3UMQ8 | 32.3 | 195 | 116 | 6 | 178 | 357 | 163 | 356 | 8.0e-15 | 83.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064180.t1 | G7ZX23 | 89.1 | 571 | 58 | 2 | 1 | 571 | 1 | 567 | 1.7e-223 | 785.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064180.t1 | MTR_0072s0050 | 95.622 | 571 | 21 | 2 | 1 | 571 | 1 | 567 | 0.0 | 1091 |
| MS.gene064180.t1 | MTR_2g090095 | 41.717 | 501 | 232 | 16 | 87 | 560 | 63 | 530 | 5.40e-94 | 301 |
| MS.gene064180.t1 | MTR_2g090095 | 44.531 | 384 | 158 | 13 | 204 | 560 | 1 | 356 | 1.07e-77 | 253 |
| MS.gene064180.t1 | MTR_7g116780 | 35.971 | 139 | 73 | 2 | 228 | 366 | 5 | 127 | 6.75e-17 | 77.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064180.t1 | AT1G03530 | 63.959 | 197 | 65 | 4 | 157 | 351 | 336 | 528 | 8.52e-75 | 254 |
Find 168 sgRNAs with CRISPR-Local
Find 327 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCGGTGTCTCCGCCGTAAC+AGG | 0.188028 | 4.2:+56242429 | None:intergenic |
| ATCTCATTCTTTGACTTAAT+TGG | 0.194631 | 4.2:+56241940 | None:intergenic |
| GTTCCGATCCGTTGTTGTTT+TGG | 0.218995 | 4.2:+56242463 | None:intergenic |
| CTTTCCACTGATTTCTCAAT+AGG | 0.264015 | 4.2:+56242243 | None:intergenic |
| AGCACATGTTCAGCAAATTC+TGG | 0.272472 | 4.2:+56239547 | None:intergenic |
| CAGCGTCCTAGTCCTATTTC+TGG | 0.273259 | 4.2:-56238797 | MS.gene064180:CDS |
| TGCTGTTGAAATGGAATTCC+TGG | 0.277475 | 4.2:+56239013 | None:intergenic |
| TCTCATCAGTTTCCTGTTCC+AGG | 0.277521 | 4.2:-56239031 | MS.gene064180:CDS |
| GTGGCTGCTGCAGGTGCATT+AGG | 0.287533 | 4.2:+56239274 | None:intergenic |
| GGTTTAGTTGATGAAATCTT+TGG | 0.291789 | 4.2:-56239664 | MS.gene064180:CDS |
| TTAGGTGTCTCTGCCGCAAC+AGG | 0.297151 | 4.2:+56242375 | None:intergenic |
| AAGTTAGGACCTGCATTTAA+AGG | 0.297546 | 4.2:+56239172 | None:intergenic |
| GACTCCGCCGCAAAAGGGTT+TGG | 0.304603 | 4.2:+56242306 | None:intergenic |
| ATTGAATTTGCAGCAAAGTT+AGG | 0.318590 | 4.2:+56239157 | None:intergenic |
| TAAGTCAAAGAATGAGATTC+AGG | 0.320696 | 4.2:-56241935 | MS.gene064180:intron |
| GTCTCCGCCGTAACAGGGTT+CGG | 0.324427 | 4.2:+56242435 | None:intergenic |
| GCCACATCATTCGTTAATAA+AGG | 0.334570 | 4.2:-56239256 | MS.gene064180:CDS |
| GCCGAAAAGCTTGGTACTTC+GGG | 0.336858 | 4.2:-56242276 | MS.gene064180:CDS |
| TGTTGCTGCGCTTGAAAGAT+AGG | 0.339681 | 4.2:+56238845 | None:intergenic |
| GGGTTGTTGTGAAAATATAT+TGG | 0.347751 | 4.2:+56238937 | None:intergenic |
| TCAATAGTAAGGATCTTTAC+AGG | 0.352711 | 4.2:-56239525 | MS.gene064180:CDS |
| CCTTGTCCAATACCTGAAAA+AGG | 0.360418 | 4.2:+56239223 | None:intergenic |
| GGAAGGATTGTTGTGGCATC+TGG | 0.363969 | 4.2:+56238885 | None:intergenic |
| GGCTGTGGCTGCTGTGGAAA+TGG | 0.369991 | 4.2:+56239118 | None:intergenic |
| GCATTTGAAGGAAATGCATT+TGG | 0.370357 | 4.2:+56239085 | None:intergenic |
| TATCTTTCAAGCGCAGCAAC+AGG | 0.370424 | 4.2:-56238843 | MS.gene064180:CDS |
| ACCGGTGACTCCGCCGCAAA+AGG | 0.372001 | 4.2:+56242300 | None:intergenic |
| CACACATCCACTGGAGGAAC+TGG | 0.373095 | 4.2:+56241289 | None:intergenic |
| TGAGAGGGGTTGCCAGAAAT+AGG | 0.376962 | 4.2:+56238785 | None:intergenic |
| CAATTTCATCCTGGTTCATC+AGG | 0.378170 | 4.2:-56238764 | MS.gene064180:CDS |
| CACGAACCCTGGTGCATACA+TGG | 0.387622 | 4.2:+56238916 | None:intergenic |
| GGAGGTAACACATGCTCTTT+CGG | 0.393457 | 4.2:+56239337 | None:intergenic |
| ACTCCGCCGCAAAAGGGTTT+GGG | 0.394769 | 4.2:+56242307 | None:intergenic |
| GGATTCATTTGCTGTTGAAA+TGG | 0.402802 | 4.2:+56239004 | None:intergenic |
| TTGTATCTCACAACATAATA+CGG | 0.411728 | 4.2:+56239628 | None:intergenic |
| GGTTGTTGTGAAAATATATT+GGG | 0.420648 | 4.2:+56238938 | None:intergenic |
| GGCCGAAAAGCTTGGTACTT+CGG | 0.424127 | 4.2:-56242277 | MS.gene064180:CDS |
| TCATTTCAATGTCACCTTGA+AGG | 0.425382 | 4.2:+56238692 | None:intergenic |
| AAGGAAATGCATTTGGAGGC+AGG | 0.435735 | 4.2:+56239092 | None:intergenic |
| TCTCCGCCGTAACAGGGTTC+GGG | 0.443871 | 4.2:+56242436 | None:intergenic |
| TGAAATGGAATTCCTGGAAC+AGG | 0.448959 | 4.2:+56239019 | None:intergenic |
| TCGTCATCATCGTCGACGTC+TGG | 0.450723 | 4.2:-56242096 | MS.gene064180:CDS |
| CCTGCATTTAAAGGTTGAAA+AGG | 0.454155 | 4.2:+56239181 | None:intergenic |
| GATGTTCCTGCGGGGATCCA+AGG | 0.456245 | 4.2:-56239595 | MS.gene064180:CDS |
| GCCGTAACAGGGTTCGGGTC+AGG | 0.457404 | 4.2:+56242441 | None:intergenic |
| CAACTAAACCTAGTGGTTTG+CGG | 0.462976 | 4.2:+56239677 | None:intergenic |
| GATAAGTGATGATGAGAAGA+TGG | 0.464299 | 4.2:-56242019 | MS.gene064180:CDS |
| ATGATGAGAAGATGGTTAGT+TGG | 0.469112 | 4.2:-56242011 | MS.gene064180:CDS |
| AATATATTGGGCTGTACCCC+AGG | 0.469285 | 4.2:+56238950 | None:intergenic |
| ATGCTGAAGATGAAGAAGAA+GGG | 0.469741 | 4.2:-56242044 | MS.gene064180:CDS |
| AAAAGCTTAGCAACAACAAC+GGG | 0.470692 | 4.2:-56242341 | MS.gene064180:CDS |
| GGAGAGGATGGCGACCTTCA+AGG | 0.471781 | 4.2:-56238706 | MS.gene064180:CDS |
| CATTTCCCAACTATGATGCC+TGG | 0.471966 | 4.2:-56238968 | MS.gene064180:CDS |
| CCCTGTTACGGCGGAGACAC+CGG | 0.474977 | 4.2:-56242430 | MS.gene064180:CDS |
| AGAACAGAACCCTCATTAAG+AGG | 0.475235 | 4.2:+56239715 | None:intergenic |
| TGTACCCCAGGCATCATAGT+TGG | 0.475387 | 4.2:+56238962 | None:intergenic |
| ATGAGAAAGAGGCTGAATAC+AGG | 0.476574 | 4.2:-56239438 | MS.gene064180:CDS |
| TGAACATGTGCTCAATAGTA+AGG | 0.479283 | 4.2:-56239536 | MS.gene064180:CDS |
| CCGGTGACTCCGCCGCAAAA+GGG | 0.479820 | 4.2:+56242301 | None:intergenic |
| AACCCCTCTCAATTTCATCC+TGG | 0.481613 | 4.2:-56238773 | MS.gene064180:CDS |
| TGTGGTGCTACAGGTGCATT+AGG | 0.482360 | 4.2:+56239316 | None:intergenic |
| CCTCCTTCAGTTGAGGTGAA+TGG | 0.485422 | 4.2:-56242201 | MS.gene064180:CDS |
| TTTCGTGGTGCCAGTGGGAG+AGG | 0.486561 | 4.2:-56238722 | MS.gene064180:CDS |
| GTGGAAAGGATCACGTTAAC+GGG | 0.488457 | 4.2:-56242228 | MS.gene064180:CDS |
| ATGTTCCTGCGGGGATCCAA+GGG | 0.491170 | 4.2:-56239594 | MS.gene064180:CDS |
| AGTGGAAAGGATCACGTTAA+CGG | 0.491424 | 4.2:-56242229 | MS.gene064180:CDS |
| GTTGCTGCGCTTGAAAGATA+GGG | 0.492823 | 4.2:+56238846 | None:intergenic |
| AGGAAAGGCTATGATGCATC+TGG | 0.493922 | 4.2:-56239505 | MS.gene064180:CDS |
| TGGCTGCTGCAGGTGCATTA+GGG | 0.494505 | 4.2:+56239275 | None:intergenic |
| GTACCCCAGGCATCATAGTT+GGG | 0.495295 | 4.2:+56238963 | None:intergenic |
| TAATATGACATGGCATTTGA+AGG | 0.495859 | 4.2:+56239073 | None:intergenic |
| CATGTATGCACCAGGGTTCG+TGG | 0.497858 | 4.2:-56238915 | MS.gene064180:CDS |
| TTTGGAGGCAGGGAAGGCTG+TGG | 0.498365 | 4.2:+56239103 | None:intergenic |
| TGGGAAATGAGTTCCGTGAC+TGG | 0.498859 | 4.2:+56238982 | None:intergenic |
| GGAAATGAGGATAAAGATGA+TGG | 0.500095 | 4.2:-56242180 | MS.gene064180:CDS |
| GGGGTAAATGATCAAAATCC+TGG | 0.504975 | 4.2:-56239391 | MS.gene064180:CDS |
| ATTTCCCAACTATGATGCCT+GGG | 0.507129 | 4.2:-56238967 | MS.gene064180:CDS |
| ACCTGACCCGAACCCTGTTA+CGG | 0.508969 | 4.2:-56242442 | MS.gene064180:CDS |
| AGTTGATGAAATCTTTGGAC+CGG | 0.513400 | 4.2:-56239659 | MS.gene064180:CDS |
| CAACAACCCATGTATGCACC+AGG | 0.516417 | 4.2:-56238923 | MS.gene064180:CDS |
| CCACTGGCACCACGAAATGA+TGG | 0.518547 | 4.2:+56238728 | None:intergenic |
| ACGAATGATGTGGCTGCTGC+AGG | 0.520533 | 4.2:+56239265 | None:intergenic |
| TGCTGAAGATGAAGAAGAAG+GGG | 0.528073 | 4.2:-56242043 | MS.gene064180:CDS |
| TCTGAAAATGATGTTCCTGC+GGG | 0.528260 | 4.2:-56239604 | MS.gene064180:CDS |
| CCGGTGTCTCCGCCGTAACA+GGG | 0.528311 | 4.2:+56242430 | None:intergenic |
| TCACCGGTGGCCGAAAAGCT+TGG | 0.529066 | 4.2:-56242285 | MS.gene064180:CDS |
| TTTGAAGGAAATGCATTTGG+AGG | 0.531200 | 4.2:+56239088 | None:intergenic |
| AACACATGATGTGGTGCTAC+AGG | 0.534154 | 4.2:+56239307 | None:intergenic |
| TTTCCATTCACCTCAACTGA+AGG | 0.534430 | 4.2:+56242198 | None:intergenic |
| TTTCTTCTTTAACAGACTCT+CGG | 0.534882 | 4.2:-56239775 | MS.gene064180:intron |
| GATGCTGAAGATGAAGAAGA+AGG | 0.539469 | 4.2:-56242045 | MS.gene064180:CDS |
| GTGGTGCCAGTGGGAGAGGA+TGG | 0.539856 | 4.2:-56238718 | MS.gene064180:CDS |
| AGGGAAGGCTGTGGCTGCTG+TGG | 0.542103 | 4.2:+56239112 | None:intergenic |
| GGGAAATGAGTTCCGTGACT+GGG | 0.545756 | 4.2:+56238983 | None:intergenic |
| TCCTTTATTAACGAATGATG+TGG | 0.549956 | 4.2:+56239255 | None:intergenic |
| AATGCATTTGGAGGCAGGGA+AGG | 0.550709 | 4.2:+56239097 | None:intergenic |
| TTAATGAGGGTTCTGTTCTG+TGG | 0.552326 | 4.2:-56239711 | MS.gene064180:CDS |
| CCATCATTTCGTGGTGCCAG+TGG | 0.552811 | 4.2:-56238728 | MS.gene064180:CDS |
| GAAGCATGAACCTCTTAATG+AGG | 0.553949 | 4.2:-56239725 | MS.gene064180:CDS |
| CCATTCACCTCAACTGAAGG+AGG | 0.554976 | 4.2:+56242201 | None:intergenic |
| TTGCTGCGCTTGAAAGATAG+GGG | 0.560367 | 4.2:+56238847 | None:intergenic |
| GGTGCTAAACACACATCCAC+TGG | 0.561774 | 4.2:+56241280 | None:intergenic |
| CGAGGGAGACCATCATTTCG+TGG | 0.561884 | 4.2:-56238737 | MS.gene064180:CDS |
| CGCTGCTGCAATTCAGTGGG+TGG | 0.563508 | 4.2:+56238815 | None:intergenic |
| TGTATCTCACAACATAATAC+GGG | 0.565567 | 4.2:+56239629 | None:intergenic |
| TGACCCGAACCCTGTTACGG+CGG | 0.565759 | 4.2:-56242439 | MS.gene064180:CDS |
| AGTAAGGATCTTTACAGGAA+AGG | 0.565790 | 4.2:-56239520 | MS.gene064180:CDS |
| AGGAAATGCATTTGGAGGCA+GGG | 0.573403 | 4.2:+56239093 | None:intergenic |
| AGTTGAGGTGAATGGAAATG+AGG | 0.577369 | 4.2:-56242193 | MS.gene064180:CDS |
| TTCTGAAAATGATGTTCCTG+CGG | 0.582447 | 4.2:-56239605 | MS.gene064180:CDS |
| AGGTCGCCATCCTCTCCCAC+TGG | 0.585227 | 4.2:+56238712 | None:intergenic |
| ACTGAAAGCCGCAAACCACT+AGG | 0.586696 | 4.2:-56239685 | MS.gene064180:CDS |
| TGCTGCAGGTGCATTAGGGA+CGG | 0.586992 | 4.2:+56239279 | None:intergenic |
| ATCTTTCAAGCGCAGCAACA+GGG | 0.588952 | 4.2:-56238842 | MS.gene064180:CDS |
| CCTGGTTCATCAGGTAGTCG+AGG | 0.589472 | 4.2:-56238755 | MS.gene064180:CDS |
| TTTGCCTCCAGTTCCTCCAG+TGG | 0.595735 | 4.2:-56241296 | MS.gene064180:CDS |
| AGGACGCTGCTGCAATTCAG+TGG | 0.597169 | 4.2:+56238811 | None:intergenic |
| GAACCAGGATGAAATTGAGA+GGG | 0.598532 | 4.2:+56238770 | None:intergenic |
| GATGACGAAGATGTTGTAGT+AGG | 0.598739 | 4.2:-56241964 | MS.gene064180:CDS |
| GGGTTGCCAGAAATAGGACT+AGG | 0.599568 | 4.2:+56238791 | None:intergenic |
| CCTCGACTACCTGATGAACC+AGG | 0.599976 | 4.2:+56238755 | None:intergenic |
| GCAGGTGCATTAGGGACGGT+AGG | 0.600499 | 4.2:+56239283 | None:intergenic |
| GTTAGTTGGAGTGCGGCTGA+TGG | 0.600500 | 4.2:-56241997 | MS.gene064180:CDS |
| AACCCAAAACAACAACGGAT+CGG | 0.601875 | 4.2:-56242466 | MS.gene064180:CDS |
| CATCATTTCGTGGTGCCAGT+GGG | 0.604182 | 4.2:-56238727 | MS.gene064180:CDS |
| GATAAAGATGATGGAAGTGA+AGG | 0.608280 | 4.2:-56242171 | MS.gene064180:CDS |
| TCTCGGAGCTCAAGTCATTG+TGG | 0.608772 | 4.2:-56239758 | MS.gene064180:CDS |
| CGTTAACAACAACCCTGTTG+CGG | 0.609129 | 4.2:-56242388 | MS.gene064180:CDS |
| GGAGCTCAAGTCATTGTGGA+AGG | 0.615668 | 4.2:-56239754 | MS.gene064180:CDS |
| GGACGCTGCTGCAATTCAGT+GGG | 0.619165 | 4.2:+56238812 | None:intergenic |
| TAGGTGTCTCTGCCGCAACA+GGG | 0.619305 | 4.2:+56242376 | None:intergenic |
| CTGGTTCATCAGGTAGTCGA+GGG | 0.619589 | 4.2:-56238754 | MS.gene064180:CDS |
| GGGTTGCTGAATCTGTTGGA+AGG | 0.619676 | 4.2:+56238868 | None:intergenic |
| ACGAACCCTGGTGCATACAT+GGG | 0.620882 | 4.2:+56238917 | None:intergenic |
| GGGTGACCCTCCTTCAGTTG+AGG | 0.622504 | 4.2:-56242208 | MS.gene064180:CDS |
| ATGTATGCACCAGGGTTCGT+GGG | 0.622661 | 4.2:-56238914 | MS.gene064180:CDS |
| CACCATAAAATGCTACCTGT+GGG | 0.623469 | 4.2:-56241256 | MS.gene064180:CDS |
| ATCTGTTGGAAGGATTGTTG+TGG | 0.627519 | 4.2:+56238878 | None:intergenic |
| TCAAGTCATTGTGGAAGGAG+TGG | 0.631477 | 4.2:-56239749 | MS.gene064180:CDS |
| ATTTCATCAACTAAACCTAG+TGG | 0.632993 | 4.2:+56239670 | None:intergenic |
| ACCGACATAACAACTCCCAC+AGG | 0.634585 | 4.2:+56241241 | None:intergenic |
| ACACCATAAAATGCTACCTG+TGG | 0.634996 | 4.2:-56241257 | MS.gene064180:CDS |
| GGTTCTGACAGCGATGAAGA+CGG | 0.635201 | 4.2:-56242075 | MS.gene064180:CDS |
| CATTCACCTCAACTGAAGGA+GGG | 0.635714 | 4.2:+56242202 | None:intergenic |
| ACGGTAGGAAACACATGATG+TGG | 0.637817 | 4.2:+56239298 | None:intergenic |
| GGTGCTACAGGTGCATTAGG+AGG | 0.638012 | 4.2:+56239319 | None:intergenic |
| TGAACCAGGATGAAATTGAG+AGG | 0.638944 | 4.2:+56238769 | None:intergenic |
| CTATTGAGAAATCAGTGGAA+AGG | 0.639817 | 4.2:-56242242 | MS.gene064180:CDS |
| AAGCATGAACCTCTTAATGA+GGG | 0.641077 | 4.2:-56239724 | MS.gene064180:CDS |
| CAGCAAATGAATCCCAGTCA+CGG | 0.647461 | 4.2:-56238995 | MS.gene064180:CDS |
| GTTCCTGCGGGGATCCAAGG+GGG | 0.649023 | 4.2:-56239592 | MS.gene064180:CDS |
| ACATCCACTGGAGGAACTGG+AGG | 0.650287 | 4.2:+56241292 | None:intergenic |
| AATTCCTATTGAGAAATCAG+TGG | 0.660421 | 4.2:-56242247 | MS.gene064180:CDS |
| AGGTTGAAAAGGTGAAACTG+TGG | 0.662605 | 4.2:+56239192 | None:intergenic |
| ACCTGTGGGAGTTGTTATGT+CGG | 0.664217 | 4.2:-56241242 | MS.gene064180:intron |
| ATGGAAACCCAAAACAACAA+CGG | 0.667575 | 4.2:-56242471 | MS.gene064180:CDS |
| TTTCCCAACTATGATGCCTG+GGG | 0.674017 | 4.2:-56238966 | MS.gene064180:CDS |
| GCTAAACACACATCCACTGG+AGG | 0.675971 | 4.2:+56241283 | None:intergenic |
| GAAAAGCTTAGCAACAACAA+CGG | 0.677921 | 4.2:-56242342 | MS.gene064180:CDS |
| GATGATGGAAGTGAAGGTGA+AGG | 0.678310 | 4.2:-56242165 | MS.gene064180:CDS |
| ACTTTGCTGCAAATTCAATG+TGG | 0.680521 | 4.2:-56239153 | MS.gene064180:CDS |
| TGGTGCGTATGATGAAGAGT+TGG | 0.680674 | 4.2:-56239485 | MS.gene064180:CDS |
| TGCTGCGCTTGAAAGATAGG+GGG | 0.686754 | 4.2:+56238848 | None:intergenic |
| TGTTCCTGCGGGGATCCAAG+GGG | 0.689084 | 4.2:-56239593 | MS.gene064180:CDS |
| AACCAGGATGAAATTGAGAG+GGG | 0.690537 | 4.2:+56238771 | None:intergenic |
| CTGAAAATGATGTTCCTGCG+GGG | 0.698469 | 4.2:-56239603 | MS.gene064180:CDS |
| AACAACCCATGTATGCACCA+GGG | 0.734261 | 4.2:-56238922 | MS.gene064180:CDS |
| GAAGATGGTTAGTTGGAGTG+CGG | 0.757022 | 4.2:-56242004 | MS.gene064180:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CTTTTTTTTATTTACTAAAA+AGG | - | chr4.2:56241081-56241100 | MS.gene064180:intron | 10.0% |
| !!! | TTTTATTGATAATTAAAGAT+GGG | - | chr4.2:56239479-56239498 | MS.gene064180:CDS | 10.0% |
| !!! | TTTTTTGAAAAAGATAATAA+GGG | + | chr4.2:56239978-56239997 | None:intergenic | 10.0% |
| !!! | TTTTTTTGAAAAAGATAATA+AGG | + | chr4.2:56239979-56239998 | None:intergenic | 10.0% |
| !!! | GTTTTATTGATAATTAAAGA+TGG | - | chr4.2:56239478-56239497 | MS.gene064180:CDS | 15.0% |
| !!! | TTTATTTTCATTCATAAAGT+AGG | - | chr4.2:56239279-56239298 | MS.gene064180:CDS | 15.0% |
| !! | AATACATGAAATATATCAGA+AGG | - | chr4.2:56241347-56241366 | MS.gene064180:intron | 20.0% |
| !! | ATACATGAAATATATCAGAA+GGG | - | chr4.2:56241348-56241367 | MS.gene064180:intron | 20.0% |
| !! | GATAACATGTATATAATCTT+TGG | + | chr4.2:56239537-56239556 | None:intergenic | 20.0% |
| !!! | AACTTTGAAAATATCTTGAA+TGG | - | chr4.2:56239839-56239858 | MS.gene064180:intron | 20.0% |
| !!! | ATTATCTGGTTTTATTTAGA+AGG | - | chr4.2:56239428-56239447 | MS.gene064180:CDS | 20.0% |
| !!! | CTATTTGATTTTTCATGTAA+CGG | + | chr4.2:56240201-56240220 | None:intergenic | 20.0% |
| !!! | TATTTGATTTTTCATGTAAC+GGG | + | chr4.2:56240200-56240219 | None:intergenic | 20.0% |
| !!! | TGATTGATTCTAACAATAAT+TGG | + | chr4.2:56241377-56241396 | None:intergenic | 20.0% |
| ! | AATTCCTAGATCTTCAAAAT+TGG | + | chr4.2:56239666-56239685 | None:intergenic | 25.0% |
| ! | ACAAAAGGAAATCATTTGAA+TGG | - | chr4.2:56240036-56240055 | MS.gene064180:intron | 25.0% |
| ! | ACACTTGATTTACAAAGATA+GGG | + | chr4.2:56241311-56241330 | None:intergenic | 25.0% |
| ! | ATAGTAGTTACTAGAAAGTA+TGG | - | chr4.2:56240217-56240236 | MS.gene064180:intron | 25.0% |
| ! | ATTAATTAATTGTGTAGTGC+TGG | - | chr4.2:56239456-56239475 | MS.gene064180:CDS | 25.0% |
| ! | CAATCAATGTATTTGAGTAA+CGG | + | chr4.2:56240797-56240816 | None:intergenic | 25.0% |
| ! | CACAAAAAACTTGAACATAA+GGG | + | chr4.2:56240846-56240865 | None:intergenic | 25.0% |
| ! | CATTTATATACTTGACAACA+TGG | - | chr4.2:56239563-56239582 | MS.gene064180:CDS | 25.0% |
| ! | CTATTCTACTCATCTAATAA+GGG | + | chr4.2:56240009-56240028 | None:intergenic | 25.0% |
| ! | GAATACTTGAATTCCATTTA+GGG | + | chr4.2:56240680-56240699 | None:intergenic | 25.0% |
| ! | GGTTGTTGTGAAAATATATT+GGG | + | chr4.2:56242239-56242258 | None:intergenic | 25.0% |
| ! | GTCAAGTATATAAATGTTTC+TGG | + | chr4.2:56239559-56239578 | None:intergenic | 25.0% |
| ! | TAGAATAGAAGATGAACAAA+AGG | - | chr4.2:56240021-56240040 | MS.gene064180:intron | 25.0% |
| ! | TCTATTCTACTCATCTAATA+AGG | + | chr4.2:56240010-56240029 | None:intergenic | 25.0% |
| ! | TGAAAAAGATAATAAGGGAT+GGG | + | chr4.2:56239973-56239992 | None:intergenic | 25.0% |
| ! | TGAATACTTGAATTCCATTT+AGG | + | chr4.2:56240681-56240700 | None:intergenic | 25.0% |
| ! | TTGAAAAAGATAATAAGGGA+TGG | + | chr4.2:56239974-56239993 | None:intergenic | 25.0% |
| ! | TTGATTCTAACAATAATTGG+TGG | + | chr4.2:56241374-56241393 | None:intergenic | 25.0% |
| ! | TTGTATCTCACAACATAATA+CGG | + | chr4.2:56241549-56241568 | None:intergenic | 25.0% |
| !! | ATCTCATTCTTTGACTTAAT+TGG | + | chr4.2:56239237-56239256 | None:intergenic | 25.0% |
| !! | ATTATGTTCAAGCATTTTTG+CGG | + | chr4.2:56240456-56240475 | None:intergenic | 25.0% |
| !! | TTTTCTTTCTCTAGTTGATT+GGG | - | chr4.2:56241281-56241300 | MS.gene064180:CDS | 25.0% |
| !! | TTTTTCTTTCTCTAGTTGAT+TGG | - | chr4.2:56241280-56241299 | MS.gene064180:CDS | 25.0% |
| !!! | TTATTGTTTTTTTTCTTGCC+AGG | + | chr4.2:56241804-56241823 | None:intergenic | 25.0% |
| !!! | TTTTTTGTTGTGACCAATTT+GGG | - | chr4.2:56240340-56240359 | MS.gene064180:intron | 25.0% |
| !!! | TTTTTTTGTTGTGACCAATT+TGG | - | chr4.2:56240339-56240358 | MS.gene064180:intron | 25.0% |
| AAATCCCTAAGAATAGTAGT+TGG | - | chr4.2:56240894-56240913 | MS.gene064180:intron | 30.0% | |
| AATAACAGTGTAGAACTTGA+CGG | + | chr4.2:56240747-56240766 | None:intergenic | 30.0% | |
| AATTCCTATTGAGAAATCAG+TGG | - | chr4.2:56238927-56238946 | MS.gene064180:CDS | 30.0% | |
| ACAACCAACTACTATTCTTA+GGG | + | chr4.2:56240901-56240920 | None:intergenic | 30.0% | |
| ATCATGTGTTATGATGCATA+TGG | - | chr4.2:56240296-56240315 | MS.gene064180:intron | 30.0% | |
| ATGCATATGGAACAGAATAT+AGG | - | chr4.2:56240309-56240328 | MS.gene064180:intron | 30.0% | |
| ATGCTTCATTGACAATTATC+TGG | - | chr4.2:56239414-56239433 | MS.gene064180:CDS | 30.0% | |
| ATTACAGCAAATGAACTCAA+AGG | - | chr4.2:56240116-56240135 | MS.gene064180:intron | 30.0% | |
| ATTCAAGTATTCAACCCTAT+TGG | - | chr4.2:56240688-56240707 | MS.gene064180:intron | 30.0% | |
| ATTGAATTTGCAGCAAAGTT+AGG | + | chr4.2:56242020-56242039 | None:intergenic | 30.0% | |
| ATTTCATCAACTAAACCTAG+TGG | + | chr4.2:56241507-56241526 | None:intergenic | 30.0% | |
| CATGGTTACAAACATGTAAA+TGG | - | chr4.2:56239581-56239600 | MS.gene064180:CDS | 30.0% | |
| CCACAAAAAACTTGAACATA+AGG | + | chr4.2:56240847-56240866 | None:intergenic | 30.0% | |
| CTACAACTATAGAAGCAATT+AGG | - | chr4.2:56240517-56240536 | MS.gene064180:intron | 30.0% | |
| GACACTTGATTTACAAAGAT+AGG | + | chr4.2:56241312-56241331 | None:intergenic | 30.0% | |
| GATATATGAACGAGAAAGTT+TGG | + | chr4.2:56240978-56240997 | None:intergenic | 30.0% | |
| GCATCTAAATCTACAAGATT+GGG | + | chr4.2:56240874-56240893 | None:intergenic | 30.0% | |
| GGGTTGTTGTGAAAATATAT+TGG | + | chr4.2:56242240-56242259 | None:intergenic | 30.0% | |
| GTAAAAGCAATTAGCCAATA+GGG | + | chr4.2:56240705-56240724 | None:intergenic | 30.0% | |
| TAAGTCAAAGAATGAGATTC+AGG | - | chr4.2:56239239-56239258 | MS.gene064180:CDS | 30.0% | |
| TAATATGACATGGCATTTGA+AGG | + | chr4.2:56242104-56242123 | None:intergenic | 30.0% | |
| TCAATAGTAAGGATCTTTAC+AGG | - | chr4.2:56241649-56241668 | MS.gene064180:intron | 30.0% | |
| TCCTTTATTAACGAATGATG+TGG | + | chr4.2:56241922-56241941 | None:intergenic | 30.0% | |
| TGCATCTAAATCTACAAGAT+TGG | + | chr4.2:56240875-56240894 | None:intergenic | 30.0% | |
| TGTAAAAGCAATTAGCCAAT+AGG | + | chr4.2:56240706-56240725 | None:intergenic | 30.0% | |
| TGTATCTCACAACATAATAC+GGG | + | chr4.2:56241548-56241567 | None:intergenic | 30.0% | |
| TTCAAAGCAACATGTCAAAT+AGG | + | chr4.2:56239691-56239710 | None:intergenic | 30.0% | |
| TTTCTTCTTTAACAGACTCT+CGG | - | chr4.2:56241399-56241418 | MS.gene064180:intron | 30.0% | |
| ! | GTTTTGTGGATAATATGACA+TGG | + | chr4.2:56242114-56242133 | None:intergenic | 30.0% |
| ! | TGAGAAAATTGTGTGTTTTG+TGG | + | chr4.2:56242128-56242147 | None:intergenic | 30.0% |
| ! | TTTTCTTCACAACATGTTTC+TGG | + | chr4.2:56239513-56239532 | None:intergenic | 30.0% |
| !! | GGTTTAGTTGATGAAATCTT+TGG | - | chr4.2:56241510-56241529 | MS.gene064180:intron | 30.0% |
| !! | TATTTGACATGTTGCTTTGA+AGG | - | chr4.2:56239690-56239709 | MS.gene064180:CDS | 30.0% |
| !! | TGATTGCATAGAAAAGTACT+TGG | - | chr4.2:56239316-56239335 | MS.gene064180:CDS | 30.0% |
| !! | TTGTTGTTAACGAGATTTTG+AGG | + | chr4.2:56238778-56238797 | None:intergenic | 30.0% |
| !!! | AATGGCAAGATTTTGAAACT+TGG | - | chr4.2:56240054-56240073 | MS.gene064180:intron | 30.0% |
| !!! | CCTTATGTTCAAGTTTTTTG+TGG | - | chr4.2:56240844-56240863 | MS.gene064180:intron | 30.0% |
| AAAAGCTTAGCAACAACAAC+GGG | - | chr4.2:56238833-56238852 | MS.gene064180:CDS | 35.0% | |
| AAGCATGAACCTCTTAATGA+GGG | - | chr4.2:56241450-56241469 | MS.gene064180:intron | 35.0% | |
| AAGTTAGGACCTGCATTTAA+AGG | + | chr4.2:56242005-56242024 | None:intergenic | 35.0% | |
| AAGTTTGGTTGTGAGAATGT+AGG | + | chr4.2:56240963-56240982 | None:intergenic | 35.0% | |
| ACGCAAAAAATGACAAAGAG+AGG | - | chr4.2:56241762-56241781 | MS.gene064180:intron | 35.0% | |
| ACTTTGCTGCAAATTCAATG+TGG | - | chr4.2:56242021-56242040 | MS.gene064180:CDS | 35.0% | |
| AGCAAATGAACTCAAAGGTA+AGG | - | chr4.2:56240121-56240140 | MS.gene064180:intron | 35.0% | |
| AGTAAGGATCTTTACAGGAA+AGG | - | chr4.2:56241654-56241673 | MS.gene064180:intron | 35.0% | |
| ATGATGAGAAGATGGTTAGT+TGG | - | chr4.2:56239163-56239182 | MS.gene064180:CDS | 35.0% | |
| ATGCTGAAGATGAAGAAGAA+GGG | - | chr4.2:56239130-56239149 | MS.gene064180:CDS | 35.0% | |
| ATGGAAACCCAAAACAACAA+CGG | - | chr4.2:56238703-56238722 | MS.gene064180:CDS | 35.0% | |
| CACAACCAACTACTATTCTT+AGG | + | chr4.2:56240902-56240921 | None:intergenic | 35.0% | |
| CATTACAAAGCATATGAGAC+TGG | + | chr4.2:56241000-56241019 | None:intergenic | 35.0% | |
| CCTGCATTTAAAGGTTGAAA+AGG | + | chr4.2:56241996-56242015 | None:intergenic | 35.0% | |
| CGCAAAAAATGACAAAGAGA+GGG | - | chr4.2:56241763-56241782 | MS.gene064180:intron | 35.0% | |
| CTACTCATCTAATAAGGGAT+GGG | + | chr4.2:56240004-56240023 | None:intergenic | 35.0% | |
| CTATTGAGAAATCAGTGGAA+AGG | - | chr4.2:56238932-56238951 | MS.gene064180:CDS | 35.0% | |
| GAAAAGCTTAGCAACAACAA+CGG | - | chr4.2:56238832-56238851 | MS.gene064180:CDS | 35.0% | |
| GCAAAAAATGACAAAGAGAG+GGG | - | chr4.2:56241764-56241783 | MS.gene064180:intron | 35.0% | |
| GCAACTAAATCTTGTAGAAC+AGG | - | chr4.2:56240426-56240445 | MS.gene064180:intron | 35.0% | |
| GCATCATAACACATGATGTT+TGG | + | chr4.2:56240293-56240312 | None:intergenic | 35.0% | |
| GCATTTGAAGGAAATGCATT+TGG | + | chr4.2:56242092-56242111 | None:intergenic | 35.0% | |
| GCCACATCATTCGTTAATAA+AGG | - | chr4.2:56241918-56241937 | MS.gene064180:intron | 35.0% | |
| GGAAATGAGGATAAAGATGA+TGG | - | chr4.2:56238994-56239013 | MS.gene064180:CDS | 35.0% | |
| GGTTACAAACATGTAAATGG+TGG | - | chr4.2:56239584-56239603 | MS.gene064180:CDS | 35.0% | |
| TCTACTCATCTAATAAGGGA+TGG | + | chr4.2:56240005-56240024 | None:intergenic | 35.0% | |
| TGAACATGTGCTCAATAGTA+AGG | - | chr4.2:56241638-56241657 | MS.gene064180:intron | 35.0% | |
| TGAGAATGTAGGTAAGGATT+TGG | + | chr4.2:56240952-56240971 | None:intergenic | 35.0% | |
| TTTGAAGGAAATGCATTTGG+AGG | + | chr4.2:56242089-56242108 | None:intergenic | 35.0% | |
| ! | ACATAATACGGGTTTTTGAC+CGG | + | chr4.2:56241537-56241556 | None:intergenic | 35.0% |
| ! | CCTTTTCAACCTTTAAATGC+AGG | - | chr4.2:56241993-56242012 | MS.gene064180:CDS | 35.0% |
| ! | GATAAGTGATGATGAGAAGA+TGG | - | chr4.2:56239155-56239174 | MS.gene064180:CDS | 35.0% |
| ! | GTTTTCAGATGATGAGAAAG+AGG | - | chr4.2:56241725-56241744 | MS.gene064180:intron | 35.0% |
| ! | TGGGTTAGATTGTGAAACAT+GGG | - | chr4.2:56240150-56240169 | MS.gene064180:intron | 35.0% |
| ! | TTCTGAAAATGATGTTCCTG+CGG | - | chr4.2:56241569-56241588 | MS.gene064180:intron | 35.0% |
| !! | AGTTGATGAAATCTTTGGAC+CGG | - | chr4.2:56241515-56241534 | MS.gene064180:intron | 35.0% |
| !! | CAAACATGTAAATGGTGGAT+TGG | - | chr4.2:56239589-56239608 | MS.gene064180:CDS | 35.0% |
| !! | CTTTCCACTGATTTCTCAAT+AGG | + | chr4.2:56238934-56238953 | None:intergenic | 35.0% |
| !! | GAGTAACGGATAATCAACAT+TGG | + | chr4.2:56240783-56240802 | None:intergenic | 35.0% |
| !! | GATAAAGATGATGGAAGTGA+AGG | - | chr4.2:56239003-56239022 | MS.gene064180:CDS | 35.0% |
| !! | GGATTCATTTGCTGTTGAAA+TGG | + | chr4.2:56242173-56242192 | None:intergenic | 35.0% |
| !! | TCATTTGCTGTAATGTCTTG+TGG | + | chr4.2:56240110-56240129 | None:intergenic | 35.0% |
| !! | TGAGCCAATTTTGAAGATCT+AGG | - | chr4.2:56239659-56239678 | MS.gene064180:CDS | 35.0% |
| !! | TTGCATAGAAAAGTACTTGG+TGG | - | chr4.2:56239319-56239338 | MS.gene064180:CDS | 35.0% |
| !! | TTGTTGTTGCTAAGCTTTTC+AGG | + | chr4.2:56238832-56238851 | None:intergenic | 35.0% |
| !!! | AGATTTTGAGGCATTAGTTC+CGG | + | chr4.2:56238766-56238785 | None:intergenic | 35.0% |
| !!! | TACTCTCCTTTTTCAGGTAT+TGG | - | chr4.2:56241945-56241964 | MS.gene064180:CDS | 35.0% |
| AACAGACCAAACTGCAGTTA+AGG | + | chr4.2:56239624-56239643 | None:intergenic | 40.0% | |
| AACCAGGATGAAATTGAGAG+GGG | + | chr4.2:56242406-56242425 | None:intergenic | 40.0% | |
| AACCCAAAACAACAACGGAT+CGG | - | chr4.2:56238708-56238727 | MS.gene064180:CDS | 40.0% | |
| ACACCATAAAATGCTACCTG+TGG | - | chr4.2:56239917-56239936 | MS.gene064180:intron | 40.0% | |
| ACAGACCAAACTGCAGTTAA+GGG | + | chr4.2:56239623-56239642 | None:intergenic | 40.0% | |
| ACTCAAAGGTAAGGTTCATG+TGG | - | chr4.2:56240130-56240149 | MS.gene064180:intron | 40.0% | |
| AGAACAGAACCCTCATTAAG+AGG | + | chr4.2:56241462-56241481 | None:intergenic | 40.0% | |
| AGCACATGTTCAGCAAATTC+TGG | + | chr4.2:56241630-56241649 | None:intergenic | 40.0% | |
| AGGTTGAAAAGGTGAAACTG+TGG | + | chr4.2:56241985-56242004 | None:intergenic | 40.0% | |
| AGTGGAAAGGATCACGTTAA+CGG | - | chr4.2:56238945-56238964 | MS.gene064180:CDS | 40.0% | |
| AGTTGAGGTGAATGGAAATG+AGG | - | chr4.2:56238981-56239000 | MS.gene064180:CDS | 40.0% | |
| ATCTGTTGGAAGGATTGTTG+TGG | + | chr4.2:56242299-56242318 | None:intergenic | 40.0% | |
| ATGAGAAAGAGGCTGAATAC+AGG | - | chr4.2:56241736-56241755 | MS.gene064180:intron | 40.0% | |
| ATTCAACTACCAGTCGAAGA+GGG | - | chr4.2:56240924-56240943 | MS.gene064180:intron | 40.0% | |
| ATTTCCCAACTATGATGCCT+GGG | - | chr4.2:56242207-56242226 | MS.gene064180:CDS | 40.0% | |
| CAAAAGACATTGTAGAGCAC+TGG | + | chr4.2:56241247-56241266 | None:intergenic | 40.0% | |
| CAACTAAACCTAGTGGTTTG+CGG | + | chr4.2:56241500-56241519 | None:intergenic | 40.0% | |
| CAATTTCATCCTGGTTCATC+AGG | - | chr4.2:56242410-56242429 | MS.gene064180:CDS | 40.0% | |
| CACCATAAAATGCTACCTGT+GGG | - | chr4.2:56239918-56239937 | MS.gene064180:intron | 40.0% | |
| CATAATCACGCAACCTCTAA+AGG | - | chr4.2:56240470-56240489 | MS.gene064180:intron | 40.0% | |
| CCATTTAGGGAAACTGCAAA+AGG | + | chr4.2:56240667-56240686 | None:intergenic | 40.0% | |
| CCTTGTCCAATACCTGAAAA+AGG | + | chr4.2:56241954-56241973 | None:intergenic | 40.0% | |
| CTCAAAGGTAAGGTTCATGT+GGG | - | chr4.2:56240131-56240150 | MS.gene064180:intron | 40.0% | |
| GAACCAGGATGAAATTGAGA+GGG | + | chr4.2:56242407-56242426 | None:intergenic | 40.0% | |
| GAAGCATGAACCTCTTAATG+AGG | - | chr4.2:56241449-56241468 | MS.gene064180:intron | 40.0% | |
| GATGACGAAGATGTTGTAGT+AGG | - | chr4.2:56239210-56239229 | MS.gene064180:CDS | 40.0% | |
| GATGCTGAAGATGAAGAAGA+AGG | - | chr4.2:56239129-56239148 | MS.gene064180:CDS | 40.0% | |
| GGGGTAAATGATCAAAATCC+TGG | - | chr4.2:56241783-56241802 | MS.gene064180:intron | 40.0% | |
| GTTGTGACCAATTTGGGTAA+GGG | - | chr4.2:56240346-56240365 | MS.gene064180:intron | 40.0% | |
| TCTGAAAATGATGTTCCTGC+GGG | - | chr4.2:56241570-56241589 | MS.gene064180:intron | 40.0% | |
| TGAAATGGAATTCCTGGAAC+AGG | + | chr4.2:56242158-56242177 | None:intergenic | 40.0% | |
| TGAACCAGGATGAAATTGAG+AGG | + | chr4.2:56242408-56242427 | None:intergenic | 40.0% | |
| TGCTGAAGATGAAGAAGAAG+GGG | - | chr4.2:56239131-56239150 | MS.gene064180:CDS | 40.0% | |
| TGCTGTTGAAATGGAATTCC+TGG | + | chr4.2:56242164-56242183 | None:intergenic | 40.0% | |
| TGGTTGTGAAATTCAACCAC+CGG | + | chr4.2:56240388-56240407 | None:intergenic | 40.0% | |
| TGGTTGTGAGAATGTAGGTA+AGG | + | chr4.2:56240958-56240977 | None:intergenic | 40.0% | |
| TGTAACTTGAAGGTGACAAG+AGG | - | chr4.2:56240493-56240512 | MS.gene064180:intron | 40.0% | |
| TGTATCCCTTAACTGCAGTT+TGG | - | chr4.2:56239615-56239634 | MS.gene064180:CDS | 40.0% | |
| TGTTGTGACCAATTTGGGTA+AGG | - | chr4.2:56240345-56240364 | MS.gene064180:intron | 40.0% | |
| TTAATGAGGGTTCTGTTCTG+TGG | - | chr4.2:56241463-56241482 | MS.gene064180:intron | 40.0% | |
| TTCACAACCAACTGTTCTTC+TGG | - | chr4.2:56240398-56240417 | MS.gene064180:intron | 40.0% | |
| TTTCCATTCACCTCAACTGA+AGG | + | chr4.2:56238979-56238998 | None:intergenic | 40.0% | |
| ! | ACAGGTAGCATTTTATGGTG+TGG | + | chr4.2:56239918-56239937 | None:intergenic | 40.0% |
| ! | CAGTGCTCTACAATGTCTTT+TGG | - | chr4.2:56241245-56241264 | MS.gene064180:CDS | 40.0% |
| ! | CCTCTAAAGGTGTAACTTGA+AGG | - | chr4.2:56240483-56240502 | MS.gene064180:intron | 40.0% |
| ! | CCTTCAAGTTACACCTTTAG+AGG | + | chr4.2:56240486-56240505 | None:intergenic | 40.0% |
| ! | CCTTTTGCAGTTTCCCTAAA+TGG | - | chr4.2:56240664-56240683 | MS.gene064180:intron | 40.0% |
| ! | GGAAACTACTCTCCTTTTTC+AGG | - | chr4.2:56241939-56241958 | MS.gene064180:CDS | 40.0% |
| ! | GGGTGCAATTTCTAAAGACA+AGG | + | chr4.2:56240826-56240845 | None:intergenic | 40.0% |
| ! | TGGGTTAGATTGTGAGATGT+GGG | + | chr4.2:56241169-56241188 | None:intergenic | 40.0% |
| !! | GTGGGTTAGATTGTGAAACA+TGG | - | chr4.2:56240149-56240168 | MS.gene064180:intron | 40.0% |
| !! | TGTTGCTTTGAAGGTAGCTT+TGG | - | chr4.2:56239699-56239718 | MS.gene064180:CDS | 40.0% |
| !!! | CCTTTTTCAGGTATTGGACA+AGG | - | chr4.2:56241951-56241970 | MS.gene064180:CDS | 40.0% |
| !!! | TACTTGGTGGCTTTGAGTTT+TGG | - | chr4.2:56239332-56239351 | MS.gene064180:CDS | 40.0% |
| !!! | TTCCGATCCGTTGTTGTTTT+GGG | + | chr4.2:56238713-56238732 | None:intergenic | 40.0% |
| !!! | TTTTCAGGTATTGGACAAGG+TGG | - | chr4.2:56241954-56241973 | MS.gene064180:CDS | 40.0% |
| AACAACCCATGTATGCACCA+GGG | - | chr4.2:56242252-56242271 | MS.gene064180:CDS | 45.0% | |
| AACCCCTCTCAATTTCATCC+TGG | - | chr4.2:56242401-56242420 | MS.gene064180:CDS | 45.0% | |
| AAGGAAATGCATTTGGAGGC+AGG | + | chr4.2:56242085-56242104 | None:intergenic | 45.0% | |
| AATATATTGGGCTGTACCCC+AGG | + | chr4.2:56242227-56242246 | None:intergenic | 45.0% | |
| ACCTGTGGGAGTTGTTATGT+CGG | - | chr4.2:56239932-56239951 | MS.gene064180:intron | 45.0% | |
| ACGGTAGGAAACACATGATG+TGG | + | chr4.2:56241879-56241898 | None:intergenic | 45.0% | |
| AGCGAATGAACCCAAAGGTA+AGG | + | chr4.2:56241198-56241217 | None:intergenic | 45.0% | |
| AGGAAAGGCTATGATGCATC+TGG | - | chr4.2:56241669-56241688 | MS.gene064180:intron | 45.0% | |
| AGGAAATGCATTTGGAGGCA+GGG | + | chr4.2:56242084-56242103 | None:intergenic | 45.0% | |
| ATCTTTCAAGCGCAGCAACA+GGG | - | chr4.2:56242332-56242351 | MS.gene064180:CDS | 45.0% | |
| ATTGCAGCGAATGAACCCAA+AGG | + | chr4.2:56241203-56241222 | None:intergenic | 45.0% | |
| CAGCAAATGAATCCCAGTCA+CGG | - | chr4.2:56242179-56242198 | MS.gene064180:CDS | 45.0% | |
| CATTCAACTACCAGTCGAAG+AGG | - | chr4.2:56240923-56240942 | MS.gene064180:intron | 45.0% | |
| CATTCACCTCAACTGAAGGA+GGG | + | chr4.2:56238975-56238994 | None:intergenic | 45.0% | |
| CATTTCCCAACTATGATGCC+TGG | - | chr4.2:56242206-56242225 | MS.gene064180:CDS | 45.0% | |
| CGTTAACAACAACCCTGTTG+CGG | - | chr4.2:56238786-56238805 | MS.gene064180:CDS | 45.0% | |
| CTGAAAATGATGTTCCTGCG+GGG | - | chr4.2:56241571-56241590 | MS.gene064180:intron | 45.0% | |
| CTTTCTGCAGCATCGCTAAT+AGG | + | chr4.2:56240586-56240605 | None:intergenic | 45.0% | |
| GCAAGATCCAGAAGAACAGT+TGG | + | chr4.2:56240408-56240427 | None:intergenic | 45.0% | |
| GCAGTTTGGTCTGTTCTTGA+GGG | - | chr4.2:56239629-56239648 | MS.gene064180:CDS | 45.0% | |
| GCTGCAATGTCTTGTGGAAT+TGG | - | chr4.2:56241215-56241234 | MS.gene064180:intron | 45.0% | |
| GGAGGTAACACATGCTCTTT+CGG | + | chr4.2:56241840-56241859 | None:intergenic | 45.0% | |
| GTGGAAAGGATCACGTTAAC+GGG | - | chr4.2:56238946-56238965 | MS.gene064180:CDS | 45.0% | |
| GTTGCTGCGCTTGAAAGATA+GGG | + | chr4.2:56242331-56242350 | None:intergenic | 45.0% | |
| TATCTTTCAAGCGCAGCAAC+AGG | - | chr4.2:56242331-56242350 | MS.gene064180:CDS | 45.0% | |
| TCAAGTCATTGTGGAAGGAG+TGG | - | chr4.2:56241425-56241444 | MS.gene064180:intron | 45.0% | |
| TCATTCGCTGCAATGTCTTG+TGG | - | chr4.2:56241209-56241228 | MS.gene064180:intron | 45.0% | |
| TCTCATCAGTTTCCTGTTCC+AGG | - | chr4.2:56242143-56242162 | MS.gene064180:CDS | 45.0% | |
| TGCAGTTTGGTCTGTTCTTG+AGG | - | chr4.2:56239628-56239647 | MS.gene064180:CDS | 45.0% | |
| TGGTGCGTATGATGAAGAGT+TGG | - | chr4.2:56241689-56241708 | MS.gene064180:intron | 45.0% | |
| TGTTGCTGCGCTTGAAAGAT+AGG | + | chr4.2:56242332-56242351 | None:intergenic | 45.0% | |
| TTCAACTACCAGTCGAAGAG+GGG | - | chr4.2:56240925-56240944 | MS.gene064180:intron | 45.0% | |
| TTGCTGCGCTTGAAAGATAG+GGG | + | chr4.2:56242330-56242349 | None:intergenic | 45.0% | |
| TTGTGAAATTCAACCACCGG+TGG | + | chr4.2:56240385-56240404 | None:intergenic | 45.0% | |
| TTTCCCAACTATGATGCCTG+GGG | - | chr4.2:56242208-56242227 | MS.gene064180:CDS | 45.0% | |
| ! | ACTTGACCCAAACCCTTTTG+CGG | - | chr4.2:56238861-56238880 | MS.gene064180:CDS | 45.0% |
| ! | CTCCCACAGGTAGCATTTTA+TGG | + | chr4.2:56239923-56239942 | None:intergenic | 45.0% |
| ! | GAAGATGGTTAGTTGGAGTG+CGG | - | chr4.2:56239170-56239189 | MS.gene064180:CDS | 45.0% |
| !! | AACACATGATGTGGTGCTAC+AGG | + | chr4.2:56241870-56241889 | None:intergenic | 45.0% |
| !! | ACCCGAAGTACCAAGCTTTT+CGG | + | chr4.2:56238902-56238921 | None:intergenic | 45.0% |
| !! | AGACATTGTAGAGCACTGGT+CGG | + | chr4.2:56241243-56241262 | None:intergenic | 45.0% |
| !! | GAAGTGTTGAAGTGACCATG+CGG | - | chr4.2:56240542-56240561 | MS.gene064180:intron | 45.0% |
| !! | GATGATGGAAGTGAAGGTGA+AGG | - | chr4.2:56239009-56239028 | MS.gene064180:CDS | 45.0% |
| !! | GTGGGTTAGATTGTGAGATG+TGG | + | chr4.2:56241170-56241189 | None:intergenic | 45.0% |
| !! | TTGCTAAGCTTTTCAGGCTG+TGG | + | chr4.2:56238826-56238845 | None:intergenic | 45.0% |
| !!! | GTTCCGATCCGTTGTTGTTT+TGG | + | chr4.2:56238714-56238733 | None:intergenic | 45.0% |
| AATGCATTTGGAGGCAGGGA+AGG | + | chr4.2:56242080-56242099 | None:intergenic | 50.0% | |
| AATTCAACCACCGGTGGAAG+AGG | + | chr4.2:56240379-56240398 | None:intergenic | 50.0% | |
| ACCCAAAGGTAAGGTTCGTG+TGG | + | chr4.2:56241189-56241208 | None:intergenic | 50.0% | |
| ACCCACACGAACCTTACCTT+TGG | - | chr4.2:56241184-56241203 | MS.gene064180:intron | 50.0% | |
| ACCGACATAACAACTCCCAC+AGG | + | chr4.2:56239936-56239955 | None:intergenic | 50.0% | |
| ACGAACCCTGGTGCATACAT+GGG | + | chr4.2:56242260-56242279 | None:intergenic | 50.0% | |
| ACTGAAAGCCGCAAACCACT+AGG | - | chr4.2:56241489-56241508 | MS.gene064180:intron | 50.0% | |
| AGACCAAAGTTGTTCCCCCT+TGG | + | chr4.2:56241599-56241618 | None:intergenic | 50.0% | |
| ATGTATGCACCAGGGTTCGT+GGG | - | chr4.2:56242260-56242279 | MS.gene064180:CDS | 50.0% | |
| ATTCAACCACCGGTGGAAGA+GGG | + | chr4.2:56240378-56240397 | None:intergenic | 50.0% | |
| CAACAACCCATGTATGCACC+AGG | - | chr4.2:56242251-56242270 | MS.gene064180:CDS | 50.0% | |
| CAGCGTCCTAGTCCTATTTC+TGG | - | chr4.2:56242377-56242396 | MS.gene064180:CDS | 50.0% | |
| CCATTCACCTCAACTGAAGG+AGG | + | chr4.2:56238976-56238995 | None:intergenic | 50.0% | |
| CCCAAAGGTAAGGTTCGTGT+GGG | + | chr4.2:56241188-56241207 | None:intergenic | 50.0% | |
| CCCACACGAACCTTACCTTT+GGG | - | chr4.2:56241185-56241204 | MS.gene064180:intron | 50.0% | |
| CCTCCTTCAGTTGAGGTGAA+TGG | - | chr4.2:56238973-56238992 | MS.gene064180:CDS | 50.0% | |
| CTGGTTCATCAGGTAGTCGA+GGG | - | chr4.2:56242420-56242439 | MS.gene064180:CDS | 50.0% | |
| GATCCAAGGGGGAACAACTT+TGG | - | chr4.2:56241593-56241612 | MS.gene064180:intron | 50.0% | |
| GCCGAAAAGCTTGGTACTTC+GGG | - | chr4.2:56238898-56238917 | MS.gene064180:CDS | 50.0% | |
| GCTAAACACACATCCACTGG+AGG | + | chr4.2:56239894-56239913 | None:intergenic | 50.0% | |
| GGAAGGATTGTTGTGGCATC+TGG | + | chr4.2:56242292-56242311 | None:intergenic | 50.0% | |
| GGAGCTCAAGTCATTGTGGA+AGG | - | chr4.2:56241420-56241439 | MS.gene064180:intron | 50.0% | |
| GGCCGAAAAGCTTGGTACTT+CGG | - | chr4.2:56238897-56238916 | MS.gene064180:CDS | 50.0% | |
| GGCTAAGCCCTTACCCAAAT+TGG | + | chr4.2:56240356-56240375 | None:intergenic | 50.0% | |
| GGGAAATGAGTTCCGTGACT+GGG | + | chr4.2:56242194-56242213 | None:intergenic | 50.0% | |
| GGGTTGCCAGAAATAGGACT+AGG | + | chr4.2:56242386-56242405 | None:intergenic | 50.0% | |
| GGGTTGCTGAATCTGTTGGA+AGG | + | chr4.2:56242309-56242328 | None:intergenic | 50.0% | |
| GGTGCTAAACACACATCCAC+TGG | + | chr4.2:56239897-56239916 | None:intergenic | 50.0% | |
| GTACCCCAGGCATCATAGTT+GGG | + | chr4.2:56242214-56242233 | None:intergenic | 50.0% | |
| TAGGGGGTTGCTGAATCTGT+TGG | + | chr4.2:56242313-56242332 | None:intergenic | 50.0% | |
| TCAACTACCAGTCGAAGAGG+GGG | - | chr4.2:56240926-56240945 | MS.gene064180:intron | 50.0% | |
| TCAAGAACTTGACCTCCGCA+TGG | + | chr4.2:56240560-56240579 | None:intergenic | 50.0% | |
| TCTCGGAGCTCAAGTCATTG+TGG | - | chr4.2:56241416-56241435 | MS.gene064180:intron | 50.0% | |
| TGAGAGGGGTTGCCAGAAAT+AGG | + | chr4.2:56242392-56242411 | None:intergenic | 50.0% | |
| TGCTGCGCTTGAAAGATAGG+GGG | + | chr4.2:56242329-56242348 | None:intergenic | 50.0% | |
| TGGGAAATGAGTTCCGTGAC+TGG | + | chr4.2:56242195-56242214 | None:intergenic | 50.0% | |
| TGTACCCCAGGCATCATAGT+TGG | + | chr4.2:56242215-56242234 | None:intergenic | 50.0% | |
| ! | CATCATTTCGTGGTGCCAGT+GGG | - | chr4.2:56242447-56242466 | MS.gene064180:CDS | 50.0% |
| ! | GGTTCTGACAGCGATGAAGA+CGG | - | chr4.2:56239099-56239118 | MS.gene064180:CDS | 50.0% |
| !! | AGCTTTTCAGGCTGTGGCTT+AGG | + | chr4.2:56238820-56238839 | None:intergenic | 50.0% |
| !! | GCTTTGAAGGTAGCTTTGGC+TGG | - | chr4.2:56239703-56239722 | MS.gene064180:CDS | 50.0% |
| !! | TGTGGTGCTACAGGTGCATT+AGG | + | chr4.2:56241861-56241880 | None:intergenic | 50.0% |
| ACATCCACTGGAGGAACTGG+AGG | + | chr4.2:56239885-56239904 | None:intergenic | 55.0% | |
| ACCTGACCCGAACCCTGTTA+CGG | - | chr4.2:56238732-56238751 | MS.gene064180:CDS | 55.0% | |
| ACGAATGATGTGGCTGCTGC+AGG | + | chr4.2:56241912-56241931 | None:intergenic | 55.0% | |
| ACTCCGCCGCAAAAGGGTTT+GGG | + | chr4.2:56238870-56238889 | None:intergenic | 55.0% | |
| AGGACGCTGCTGCAATTCAG+TGG | + | chr4.2:56242366-56242385 | None:intergenic | 55.0% | |
| ATGTTCCTGCGGGGATCCAA+GGG | - | chr4.2:56241580-56241599 | MS.gene064180:intron | 55.0% | |
| CACACATCCACTGGAGGAAC+TGG | + | chr4.2:56239888-56239907 | None:intergenic | 55.0% | |
| CACGAACCCTGGTGCATACA+TGG | + | chr4.2:56242261-56242280 | None:intergenic | 55.0% | |
| CATGTATGCACCAGGGTTCG+TGG | - | chr4.2:56242259-56242278 | MS.gene064180:CDS | 55.0% | |
| CCACTGGCACCACGAAATGA+TGG | + | chr4.2:56242449-56242468 | None:intergenic | 55.0% | |
| CCTCGACTACCTGATGAACC+AGG | + | chr4.2:56242422-56242441 | None:intergenic | 55.0% | |
| CCTGGTTCATCAGGTAGTCG+AGG | - | chr4.2:56242419-56242438 | MS.gene064180:CDS | 55.0% | |
| CGAGGGAGACCATCATTTCG+TGG | - | chr4.2:56242437-56242456 | MS.gene064180:CDS | 55.0% | |
| GGACGCTGCTGCAATTCAGT+GGG | + | chr4.2:56242365-56242384 | None:intergenic | 55.0% | |
| GTGTTGAAGTGACCATGCGG+AGG | - | chr4.2:56240545-56240564 | MS.gene064180:intron | 55.0% | |
| GTTAGTTGGAGTGCGGCTGA+TGG | - | chr4.2:56239177-56239196 | MS.gene064180:CDS | 55.0% | |
| TAGGTGTCTCTGCCGCAACA+GGG | + | chr4.2:56238801-56238820 | None:intergenic | 55.0% | |
| TCGTCATCATCGTCGACGTC+TGG | - | chr4.2:56239078-56239097 | MS.gene064180:CDS | 55.0% | |
| TGCTGCAGGTGCATTAGGGA+CGG | + | chr4.2:56241898-56241917 | None:intergenic | 55.0% | |
| TGGCTGCTGCAGGTGCATTA+GGG | + | chr4.2:56241902-56241921 | None:intergenic | 55.0% | |
| TTAGGTGTCTCTGCCGCAAC+AGG | + | chr4.2:56238802-56238821 | None:intergenic | 55.0% | |
| TTCAACCACCGGTGGAAGAG+GGG | + | chr4.2:56240377-56240396 | None:intergenic | 55.0% | |
| TTTGCCTCCAGTTCCTCCAG+TGG | - | chr4.2:56239878-56239897 | MS.gene064180:intron | 55.0% | |
| ! | CCATCATTTCGTGGTGCCAG+TGG | - | chr4.2:56242446-56242465 | MS.gene064180:CDS | 55.0% |
| ! | GGTGCTACAGGTGCATTAGG+AGG | + | chr4.2:56241858-56241877 | None:intergenic | 55.0% |
| ! | GTACCAAGCTTTTCGGCCAC+CGG | + | chr4.2:56238895-56238914 | None:intergenic | 55.0% |
| ! | TGACCCAAACCCTTTTGCGG+CGG | - | chr4.2:56238864-56238883 | MS.gene064180:CDS | 55.0% |
| !!! | TGGTTTTGACCCACGAACCC+TGG | + | chr4.2:56242272-56242291 | None:intergenic | 55.0% |
| CGCTGCTGCAATTCAGTGGG+TGG | + | chr4.2:56242362-56242381 | None:intergenic | 60.0% | |
| GACTCCGCCGCAAAAGGGTT+TGG | + | chr4.2:56238871-56238890 | None:intergenic | 60.0% | |
| GATGTTCCTGCGGGGATCCA+AGG | - | chr4.2:56241579-56241598 | MS.gene064180:intron | 60.0% | |
| GATTTGGCCCCCTCTTCGAC+TGG | + | chr4.2:56240936-56240955 | None:intergenic | 60.0% | |
| GCAGGTGCATTAGGGACGGT+AGG | + | chr4.2:56241894-56241913 | None:intergenic | 60.0% | |
| GGAGAGGATGGCGACCTTCA+AGG | - | chr4.2:56242468-56242487 | MS.gene064180:CDS | 60.0% | |
| GGCTGTGGCTGCTGTGGAAA+TGG | + | chr4.2:56242059-56242078 | None:intergenic | 60.0% | |
| GGGTGACCCTCCTTCAGTTG+AGG | - | chr4.2:56238966-56238985 | MS.gene064180:CDS | 60.0% | |
| GTCTCCGCCGTAACAGGGTT+CGG | + | chr4.2:56238742-56238761 | None:intergenic | 60.0% | |
| GTGGCTGCTGCAGGTGCATT+AGG | + | chr4.2:56241903-56241922 | None:intergenic | 60.0% | |
| TCACCGGTGGCCGAAAAGCT+TGG | - | chr4.2:56238889-56238908 | MS.gene064180:CDS | 60.0% | |
| TCTCCGCCGTAACAGGGTTC+GGG | + | chr4.2:56238741-56238760 | None:intergenic | 60.0% | |
| TGACCCGAACCCTGTTACGG+CGG | - | chr4.2:56238735-56238754 | MS.gene064180:CDS | 60.0% | |
| TGTTCCTGCGGGGATCCAAG+GGG | - | chr4.2:56241581-56241600 | MS.gene064180:intron | 60.0% | |
| TTTGGAGGCAGGGAAGGCTG+TGG | + | chr4.2:56242074-56242093 | None:intergenic | 60.0% | |
| ! | TTTCGTGGTGCCAGTGGGAG+AGG | - | chr4.2:56242452-56242471 | MS.gene064180:CDS | 60.0% |
| ACCGGTGACTCCGCCGCAAA+AGG | + | chr4.2:56238877-56238896 | None:intergenic | 65.0% | |
| AGGGAAGGCTGTGGCTGCTG+TGG | + | chr4.2:56242065-56242084 | None:intergenic | 65.0% | |
| AGGTCGCCATCCTCTCCCAC+TGG | + | chr4.2:56242465-56242484 | None:intergenic | 65.0% | |
| CCCTGTTACGGCGGAGACAC+CGG | - | chr4.2:56238744-56238763 | MS.gene064180:CDS | 65.0% | |
| CCGGTGACTCCGCCGCAAAA+GGG | + | chr4.2:56238876-56238895 | None:intergenic | 65.0% | |
| CCGGTGTCTCCGCCGTAACA+GGG | + | chr4.2:56238747-56238766 | None:intergenic | 65.0% | |
| CTTAGCCCCTCTTCCACCGG+TGG | - | chr4.2:56240369-56240388 | MS.gene064180:intron | 65.0% | |
| GCCGTAACAGGGTTCGGGTC+AGG | + | chr4.2:56238736-56238755 | None:intergenic | 65.0% | |
| GGGCTTAGCCCCTCTTCCAC+CGG | - | chr4.2:56240366-56240385 | MS.gene064180:intron | 65.0% | |
| GTTCCTGCGGGGATCCAAGG+GGG | - | chr4.2:56241582-56241601 | MS.gene064180:intron | 65.0% | |
| TCCGGTGTCTCCGCCGTAAC+AGG | + | chr4.2:56238748-56238767 | None:intergenic | 65.0% | |
| ! | CCCTTTTGCGGCGGAGTCAC+CGG | - | chr4.2:56238873-56238892 | MS.gene064180:CDS | 65.0% |
| ! | GTGGTGCCAGTGGGAGAGGA+TGG | - | chr4.2:56242456-56242475 | MS.gene064180:CDS | 65.0% |
| ! | TTTTGCGGCGGAGTCACCGG+TGG | - | chr4.2:56238876-56238895 | MS.gene064180:CDS | 65.0% |
| GTTCCCCCTTGGATCCCCGC+AGG | + | chr4.2:56241588-56241607 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 56238703 | 56242493 | 56238703 | ID=MS.gene064180 |
| chr4.2 | mRNA | 56238703 | 56242493 | 56238703 | ID=MS.gene064180.t1;Parent=MS.gene064180 |
| chr4.2 | exon | 56241936 | 56242493 | 56241936 | ID=MS.gene064180.t1.exon1;Parent=MS.gene064180.t1 |
| chr4.2 | CDS | 56241936 | 56242493 | 56241936 | ID=cds.MS.gene064180.t1;Parent=MS.gene064180.t1 |
| chr4.2 | exon | 56241243 | 56241320 | 56241243 | ID=MS.gene064180.t1.exon2;Parent=MS.gene064180.t1 |
| chr4.2 | CDS | 56241243 | 56241320 | 56241243 | ID=cds.MS.gene064180.t1;Parent=MS.gene064180.t1 |
| chr4.2 | exon | 56238703 | 56239782 | 56238703 | ID=MS.gene064180.t1.exon3;Parent=MS.gene064180.t1 |
| chr4.2 | CDS | 56238703 | 56239782 | 56238703 | ID=cds.MS.gene064180.t1;Parent=MS.gene064180.t1 |
| Gene Sequence |
| Protein sequence |
