AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene039653

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene039653.t1 MTR_3g014650 96.396 666 12 1 1 666 26 679 0.0 1338
MS.gene039653.t1 MTR_8g039100 73.958 672 154 6 1 666 1 657 0.0 1033
MS.gene039653.t1 MTR_1g050740 62.000 700 203 13 8 666 8 685 0.0 860
MS.gene039653.t1 MTR_7g089950 57.003 714 232 14 7 666 7 699 0.0 798
MS.gene039653.t1 MTR_3g073100 55.166 571 211 11 59 624 52 582 0.0 600
MS.gene039653.t1 MTR_3g097260 53.180 566 218 5 59 624 50 568 0.0 590
MS.gene039653.t1 MTR_1g062740 45.024 613 278 10 60 623 47 649 3.60e-178 528
MS.gene039653.t1 MTR_5g459450 71.536 267 73 2 358 624 320 583 3.95e-136 418
MS.gene039653.t1 MTR_5g459450 58.480 171 71 0 57 227 62 232 2.40e-64 227
MS.gene039653.t1 MTR_5g459450 32.258 124 84 0 134 257 70 193 2.79e-15 80.1
MS.gene039653.t1 MTR_5g459450 44.318 88 49 0 156 243 69 156 7.94e-14 75.5
MS.gene039653.t1 MTR_8g095170 65.169 267 90 2 358 624 279 542 1.53e-125 384
MS.gene039653.t1 MTR_8g095170 55.030 169 75 1 62 229 28 196 5.73e-56 200
MS.gene039653.t1 MTR_8g095170 36.508 126 79 1 110 234 30 155 9.18e-15 78.2
MS.gene039653.t1 MTR_8g095170 65.169 267 90 2 358 624 279 542 1.22e-124 385
MS.gene039653.t1 MTR_8g095170 55.030 169 75 1 62 229 28 196 5.74e-56 202
MS.gene039653.t1 MTR_8g095170 36.508 126 79 1 110 234 30 155 5.61e-15 79.0
MS.gene039653.t1 MTR_8g088930 53.488 258 116 2 366 623 338 591 5.11e-92 300
MS.gene039653.t1 MTR_8g088930 49.746 197 99 0 60 256 9 205 1.19e-61 218
MS.gene039653.t1 MTR_8g088930 33.613 119 79 0 58 176 76 194 2.69e-14 77.0
MS.gene039653.t1 MTR_8g088930 53.488 258 116 2 366 623 338 591 5.58e-92 299
MS.gene039653.t1 MTR_8g088930 49.746 197 99 0 60 256 9 205 1.22e-61 218
MS.gene039653.t1 MTR_8g088930 33.613 119 79 0 58 176 76 194 2.63e-14 77.0
MS.gene039653.t1 MTR_8g088930 53.488 258 116 2 366 623 338 591 5.51e-91 299
MS.gene039653.t1 MTR_8g088930 49.746 197 99 0 60 256 9 205 1.39e-61 219
MS.gene039653.t1 MTR_8g088930 53.488 258 116 2 366 623 338 591 5.86e-91 299
MS.gene039653.t1 MTR_8g088930 49.746 197 99 0 60 256 9 205 1.59e-61 219
MS.gene039653.t1 MTR_8g080860 36.765 204 119 1 60 263 16 209 1.06e-35 136
MS.gene039653.t1 MTR_8g080860 36.765 204 119 1 60 263 12 205 1.44e-35 136
MS.gene039653.t1 MTR_4g107460 35.176 199 118 2 66 263 11 199 4.28e-31 125
MS.gene039653.t1 MTR_4g107460 35.294 187 121 0 62 248 54 240 4.54e-31 124
MS.gene039653.t1 MTR_4g107460 32.584 178 120 0 62 239 77 254 4.25e-21 95.5
MS.gene039653.t1 MTR_6g043150 40.230 174 104 0 61 234 7 180 1.62e-30 122
MS.gene039653.t1 MTR_6g043150 38.220 191 117 1 62 251 77 267 1.12e-28 117
MS.gene039653.t1 MTR_6g043150 36.723 177 112 0 58 234 142 318 6.07e-24 103
MS.gene039653.t1 MTR_6g043150 41.803 122 69 1 53 172 204 325 1.93e-19 90.5
MS.gene039653.t1 MTR_8g092090 35.385 195 118 1 62 248 30 224 3.58e-29 116
MS.gene039653.t1 MTR_8g092090 33.152 184 105 2 88 263 10 183 6.91e-23 98.6
MS.gene039653.t1 MTR_8g092090 36.054 147 94 0 64 210 86 232 3.01e-21 94.0
MS.gene039653.t1 MTR_2g078470 37.037 189 118 1 64 251 79 267 1.50e-27 115
MS.gene039653.t1 MTR_2g078470 34.872 195 126 1 58 251 142 336 2.97e-26 111
MS.gene039653.t1 MTR_2g078470 38.860 193 117 1 60 251 6 198 2.98e-24 105
MS.gene039653.t1 MTR_2g078470 38.312 154 95 0 62 215 215 368 3.92e-22 99.4
MS.gene039653.t1 MTR_2g078470 30.481 187 130 0 62 248 169 355 2.37e-20 94.0
MS.gene039653.t1 MTR_2g078470 32.530 166 112 0 65 230 195 360 3.12e-17 84.3
MS.gene039653.t1 MTR_2g078470 41.667 96 56 0 51 146 273 368 2.42e-15 78.6
MS.gene039653.t1 MTR_5g010840 30.682 264 137 3 19 244 75 330 8.70e-27 113
MS.gene039653.t1 MTR_5g010840 31.915 188 120 1 58 245 175 354 4.20e-22 99.4
MS.gene039653.t1 MTR_5g010840 39.815 108 65 0 57 164 258 365 3.93e-16 81.3
MS.gene039653.t1 MTR_5g010840 30.435 161 112 0 49 209 204 364 9.56e-15 77.0
MS.gene039653.t1 MTR_8g095240 34.872 195 104 2 69 263 9 180 1.95e-26 112
MS.gene039653.t1 MTR_8g095240 32.701 211 131 3 63 262 118 328 3.24e-25 109
MS.gene039653.t1 MTR_3g005910 59.459 74 28 1 483 556 1 72 3.11e-24 97.1
MS.gene039653.t1 MTR_4g099180 30.702 228 148 2 18 241 132 353 5.03e-24 105
MS.gene039653.t1 MTR_4g099180 29.605 152 98 1 94 245 165 307 2.32e-13 73.2
MS.gene039653.t1 MTR_7g451440 32.804 189 123 1 61 245 189 377 1.18e-23 105
MS.gene039653.t1 MTR_7g451440 35.398 113 73 0 134 246 193 305 5.41e-11 65.9
MS.gene039653.t1 MTR_8g080340 35.057 174 89 2 47 220 3 152 3.15e-23 97.4
MS.gene039653.t1 MTR_8g080340 33.099 142 94 1 134 274 20 161 7.52e-18 82.0
MS.gene039653.t1 MTR_8g080340 35.507 138 89 0 111 248 20 157 1.52e-16 78.2
MS.gene039653.t1 MTR_5g058920 34.706 170 111 0 65 234 198 367 1.49e-22 101
MS.gene039653.t1 MTR_5g058920 42.697 89 51 0 146 234 187 275 1.59e-13 73.6
MS.gene039653.t1 MTR_5g058920 32.609 138 93 0 109 246 196 333 8.86e-13 71.2
MS.gene039653.t1 MTR_8g007500 31.220 205 137 1 45 245 178 382 2.36e-22 101
MS.gene039653.t1 MTR_8g080350 30.172 232 123 3 63 255 125 356 3.80e-22 99.8
MS.gene039653.t1 MTR_8g080350 34.395 157 101 1 68 224 86 240 4.30e-17 84.3
MS.gene039653.t1 MTR_8g080350 32.886 149 85 2 58 191 189 337 2.74e-15 79.0
MS.gene039653.t1 MTR_3g072650 32.164 171 116 0 64 234 185 355 5.05e-22 99.8
MS.gene039653.t1 MTR_3g072650 31.159 138 95 0 109 246 184 321 6.00e-14 74.7
MS.gene039653.t1 MTR_3g072650 34.921 126 82 0 66 191 233 358 8.49e-14 74.3
MS.gene039653.t1 MTR_3g072650 32.353 170 115 0 65 234 186 355 5.75e-22 99.0
MS.gene039653.t1 MTR_3g072650 31.159 138 95 0 109 246 184 321 4.39e-14 75.1
MS.gene039653.t1 MTR_3g072650 34.921 126 82 0 66 191 233 358 9.91e-14 73.9
MS.gene039653.t1 MTR_8g080310 35.915 142 91 0 103 244 3 144 2.34e-21 91.7
MS.gene039653.t1 MTR_8g080310 36.242 149 95 0 86 234 9 157 1.12e-20 89.7
MS.gene039653.t1 MTR_8g080310 32.867 143 96 0 69 211 15 157 7.04e-18 81.6
MS.gene039653.t1 MTR_1g097110 33.333 198 110 8 437 620 1314 1503 3.70e-15 80.1
MS.gene039653.t1 MTR_8g092410 34.884 129 81 2 103 228 149 277 1.42e-13 73.2
MS.gene039653.t1 MTR_8g092410 31.852 135 87 3 124 254 147 280 4.99e-12 68.6
MS.gene039653.t1 MTR_8g023080 30.693 202 110 7 437 620 1524 1713 3.26e-13 73.9
MS.gene039653.t1 MTR_8g023080 30.693 202 110 7 437 620 1532 1721 3.65e-13 73.9
MS.gene039653.t1 MTR_4g124590 29.703 202 112 7 437 620 1524 1713 1.22e-12 72.0
MS.gene039653.t1 MTR_3g023310 33.846 130 73 1 74 203 6 122 1.69e-12 66.6
MS.gene039653.t1 MTR_3g023310 33.607 122 68 1 123 244 9 117 2.39e-12 66.2
MS.gene039653.t1 MTR_4g099180 31.724 145 93 1 35 179 149 287 2.57e-12 68.9
MS.gene039653.t1 MTR_4g099180 29.710 138 88 1 94 231 165 293 4.62e-12 68.2
MS.gene039653.t1 MTR_4g099180 36.667 90 57 0 145 234 161 250 2.63e-11 65.9
MS.gene039653.t1 MTR_4g099180 31.724 145 93 1 35 179 149 287 5.14e-12 68.2
MS.gene039653.t1 MTR_4g099180 29.286 140 90 1 94 233 165 295 7.06e-12 67.8
MS.gene039653.t1 MTR_4g099180 36.667 90 57 0 145 234 161 250 4.73e-11 65.1
MS.gene039653.t1 MTR_4g099180 30.822 146 97 1 126 271 165 306 8.52e-11 64.3
MS.gene039653.t1 MTR_1g112280 30.709 127 88 0 89 215 615 741 4.94e-11 66.6
MS.gene039653.t1 MTR_4g085090 29.798 198 117 8 437 620 1466 1655 4.99e-11 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene039653.t1 AT3G07960 68.031 635 186 6 33 666 1 619 0.0 898
MS.gene039653.t1 AT3G07960 68.031 635 186 6 33 666 1 619 0.0 896
MS.gene039653.t1 AT3G07960 69.494 613 172 5 33 644 1 599 0.0 889
MS.gene039653.t1 AT3G07960 69.494 613 172 5 33 644 1 599 0.0 889
MS.gene039653.t1 AT3G56960 60.795 704 217 14 1 666 1 683 0.0 857
MS.gene039653.t1 AT3G56960 60.795 704 217 14 1 666 1 683 0.0 857
MS.gene039653.t1 AT2G41210 61.318 698 216 13 1 666 1 676 0.0 849
MS.gene039653.t1 AT2G26420 52.686 577 237 9 50 625 39 580 0.0 602
MS.gene039653.t1 AT2G26420 52.686 577 237 9 50 625 39 580 0.0 602
MS.gene039653.t1 AT2G26420 52.686 577 237 9 50 625 39 580 0.0 602
MS.gene039653.t1 AT1G10900 43.339 593 297 10 60 628 7 584 2.27e-161 482
MS.gene039653.t1 AT1G10900 34.074 135 89 0 102 236 3 137 2.19e-16 83.6
MS.gene039653.t1 AT1G10900 38.000 100 60 1 144 243 1 98 1.23e-14 78.2
MS.gene039653.t1 AT1G10900 43.339 593 297 10 60 628 7 584 2.27e-161 482
MS.gene039653.t1 AT1G10900 34.074 135 89 0 102 236 3 137 2.19e-16 83.6
MS.gene039653.t1 AT1G10900 38.000 100 60 1 144 243 1 98 1.23e-14 78.2
MS.gene039653.t1 AT1G10900 43.339 593 297 10 60 628 7 584 2.27e-161 482
MS.gene039653.t1 AT1G10900 34.074 135 89 0 102 236 3 137 2.19e-16 83.6
MS.gene039653.t1 AT1G10900 38.000 100 60 1 144 243 1 98 1.23e-14 78.2
MS.gene039653.t1 AT3G09920 39.878 657 327 11 16 623 6 643 1.41e-156 472
MS.gene039653.t1 AT3G09920 39.878 657 327 11 16 623 6 643 1.41e-156 472
MS.gene039653.t1 AT3G09920 39.878 657 327 11 16 623 6 643 1.41e-156 472
MS.gene039653.t1 AT3G09920 39.878 657 327 11 16 623 6 643 1.41e-156 472
MS.gene039653.t1 AT1G77740 67.361 288 91 2 341 628 327 611 4.97e-135 414
MS.gene039653.t1 AT1G77740 58.427 178 74 0 59 236 72 249 2.02e-69 241
MS.gene039653.t1 AT1G77740 31.452 124 85 0 134 257 78 201 2.20e-15 80.5
MS.gene039653.t1 AT1G77740 34.653 101 66 0 42 142 147 247 1.79e-14 77.4
MS.gene039653.t1 AT1G77740 40.426 94 56 0 150 243 71 164 1.49e-13 74.7
MS.gene039653.t1 AT1G77740 67.361 288 91 2 341 628 327 611 4.97e-135 414
MS.gene039653.t1 AT1G77740 58.427 178 74 0 59 236 72 249 2.02e-69 241
MS.gene039653.t1 AT1G77740 31.452 124 85 0 134 257 78 201 2.20e-15 80.5
MS.gene039653.t1 AT1G77740 34.653 101 66 0 42 142 147 247 1.79e-14 77.4
MS.gene039653.t1 AT1G77740 40.426 94 56 0 150 243 71 164 1.49e-13 74.7
MS.gene039653.t1 AT1G21980 70.111 271 78 2 358 628 342 609 5.82e-135 414
MS.gene039653.t1 AT1G21980 60.112 178 71 0 59 236 71 248 2.82e-71 246
MS.gene039653.t1 AT1G21980 32.576 132 80 1 42 173 146 268 6.57e-13 72.4
MS.gene039653.t1 AT1G21980 39.362 94 57 0 150 243 70 163 1.48e-12 71.2
MS.gene039653.t1 AT1G60890 54.717 265 116 2 367 631 342 602 4.52e-94 307
MS.gene039653.t1 AT1G60890 45.320 203 111 0 54 256 1 203 1.88e-57 208
MS.gene039653.t1 AT1G60890 54.717 265 116 2 367 631 354 614 7.12e-94 307
MS.gene039653.t1 AT1G60890 45.960 198 107 0 59 256 18 215 5.26e-57 207
MS.gene039653.t1 AT1G01460 41.333 225 127 3 405 629 15 234 1.26e-52 187
MS.gene039653.t1 AT4G01190 41.818 220 123 3 410 629 12 226 1.57e-51 184
MS.gene039653.t1 AT4G01190 41.818 220 123 3 410 629 22 236 2.41e-51 183
MS.gene039653.t1 AT4G01190 41.818 220 123 3 410 629 22 236 2.41e-51 183
MS.gene039653.t1 AT1G77660 34.884 172 112 0 63 234 177 348 3.76e-25 108
MS.gene039653.t1 AT1G77660 34.921 126 82 0 66 191 226 351 2.13e-15 79.3
MS.gene039653.t1 AT1G21920 32.292 192 130 0 43 234 153 344 2.17e-23 102
MS.gene039653.t1 AT1G21920 33.824 136 90 0 58 193 214 349 4.00e-15 78.2
MS.gene039653.t1 AT1G21920 32.292 192 130 0 43 234 153 344 2.45e-23 103
MS.gene039653.t1 AT1G21920 33.824 136 90 0 58 193 214 349 3.15e-15 79.0
MS.gene039653.t1 AT2G35170 33.333 180 116 1 67 242 229 408 1.36e-22 102
MS.gene039653.t1 AT2G35170 35.075 134 87 0 61 194 269 402 1.67e-17 86.3
MS.gene039653.t1 AT2G35170 30.968 155 107 0 91 245 230 384 1.53e-15 80.1
MS.gene039653.t1 AT4G17080 32.418 182 119 1 65 242 258 439 1.97e-22 102
MS.gene039653.t1 AT4G17080 35.821 134 86 0 61 194 300 433 3.05e-18 89.0
MS.gene039653.t1 AT4G17080 30.921 152 96 1 94 245 250 392 2.21e-16 83.2
MS.gene039653.t1 AT4G17080 35.088 114 74 0 133 246 257 370 4.24e-12 69.7
MS.gene039653.t1 AT3G14270 31.579 171 89 6 468 620 1536 1696 1.13e-12 72.4
MS.gene039653.t1 AT3G14270 31.579 171 89 6 468 620 1536 1696 1.13e-12 72.4
MS.gene039653.t1 AT4G33240 31.579 171 89 6 468 620 1493 1653 7.49e-12 69.7
MS.gene039653.t1 AT4G33240 31.579 171 89 6 468 620 1497 1657 7.82e-12 69.3
MS.gene039653.t1 AT4G33240 31.579 171 89 6 468 620 1497 1657 7.82e-12 69.3
MS.gene039653.t1 AT4G33240 31.579 171 89 6 468 620 1497 1657 7.82e-12 69.3
MS.gene039653.t1 AT4G33240 31.579 171 89 6 468 620 1496 1656 7.95e-12 69.3
MS.gene039653.t1 AT4G33240 31.579 171 89 6 468 620 1457 1617 8.05e-12 69.3
MS.gene039653.t1 AT4G33240 31.579 171 89 6 468 620 1494 1654 8.37e-12 69.3

Find 169 sgRNAs with CRISPR-Local

Find 299 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGAGGAATGGTTTGTTTAA+TGG 0.207035 3.4:+10849404 MS.gene039653:CDS
TCTTCAACATGAAAGAATTA+TGG 0.236569 3.4:+10852891 MS.gene039653:CDS
TTATGATGGTGAATGGAAAA+AGG 0.247456 3.4:+10849322 MS.gene039653:CDS
TCTAGTCCAAACTTTCTCTT+TGG 0.262398 3.4:-10850723 None:intergenic
TCAGGTTCGCTTTGTCATAA+TGG 0.264214 3.4:+10851920 MS.gene039653:intron
TTGATCCCAAAGAGAAAGTT+TGG 0.270301 3.4:+10850717 MS.gene039653:CDS
TAAGTACCACTTTGTTCTTT+AGG 0.272506 3.4:-10849554 None:intergenic
GGAGGAATGGTTTGTTTAAT+GGG 0.278404 3.4:+10849405 MS.gene039653:CDS
ATGGTCAAGGTAAGTATCTT+TGG 0.278950 3.4:+10849078 MS.gene039653:CDS
ACCCTTCATGTGAATTTAGA+TGG 0.284141 3.4:+10850780 MS.gene039653:CDS
CTTTCAAGTCAAACCGTCTA+TGG 0.287069 3.4:-10851971 None:intergenic
GTGATACTTATAAAGGGAAT+TGG 0.288743 3.4:+10849246 MS.gene039653:CDS
TATGATGGTTGTTGGGAAAA+TGG 0.296406 3.4:+10849461 MS.gene039653:CDS
GGTACAATGATGTGGCAAAA+TGG 0.307349 3.4:+10849431 MS.gene039653:CDS
CAGGTTCGCTTTGTCATAAT+GGG 0.309061 3.4:+10851921 MS.gene039653:intron
GGTAAGTATCTTTGGATTGA+TGG 0.314470 3.4:+10849086 MS.gene039653:CDS
GACTTGAAAGGTTCGACGTT+TGG 0.319529 3.4:+10851984 MS.gene039653:CDS
TCCTCCATTGACCAATATAA+TGG 0.339875 3.4:-10849388 None:intergenic
TACACCTTGCGGTCGCAGTT+CGG 0.346435 3.4:+10852969 MS.gene039653:CDS
ACTACTGTCCGGTAGTATTC+AGG 0.348899 3.4:+10850807 MS.gene039653:CDS
TCATCTGGTGATACTTATAA+AGG 0.349922 3.4:+10849239 MS.gene039653:CDS
ACACCTTGCGGTCGCAGTTC+GGG 0.350850 3.4:+10852970 MS.gene039653:CDS
CTAGTCCAAACTTTCTCTTT+GGG 0.371473 3.4:-10850722 None:intergenic
ATTGAATTGGCCGGGTTTAG+AGG 0.376512 3.4:+10849700 MS.gene039653:CDS
CTCCATTGTGTAAAACTAAC+AGG 0.382205 3.4:+10851800 MS.gene039653:CDS
ATGTGGGAATGAAGCTCTTC+GGG 0.385683 3.4:+10851376 MS.gene039653:CDS
TGCATCCACTCCTGAAAGTC+GGG 0.386083 3.4:-10853028 None:intergenic
CTTCATGCAGACAAGTTGAT+AGG 0.393068 3.4:+10852857 MS.gene039653:intron
GGCGTATGCTTGGATCCTTC+TGG 0.393211 3.4:-10850752 None:intergenic
GGAATAGGTATGATGGTTGT+TGG 0.396978 3.4:+10849453 MS.gene039653:CDS
CATGGTAAAGGGACTTATAT+AGG 0.402597 3.4:+10849215 MS.gene039653:CDS
TGAATCTGCAACTAGGTATC+AGG 0.404283 3.4:+10849966 MS.gene039653:CDS
CCGGGTTTAGAGGAAGATAA+AGG 0.411765 3.4:+10849710 MS.gene039653:CDS
AGATCCTTAAGTGTTGTTGT+TGG 0.414524 3.4:-10852041 None:intergenic
CGAAAGGGAATGGTACGTTT+AGG 0.421918 3.4:+10849489 MS.gene039653:CDS
AAAATCTGCATTTGATGAGT+TGG 0.424427 3.4:+10849835 MS.gene039653:CDS
AGAAAGGAACTCATGGTAAT+GGG 0.427258 3.4:+10849753 MS.gene039653:CDS
GGGAAAATGGTTTGCCGAAA+GGG 0.430287 3.4:+10849474 MS.gene039653:CDS
CTTCGGGAGCTCTCATCTCC+TGG 0.430290 3.4:+10851392 MS.gene039653:CDS
TGATGTGGCAAAATGGGAAT+AGG 0.431149 3.4:+10849438 MS.gene039653:CDS
ACGCTGGTCACGAAGTTCTT+CGG 0.431752 3.4:+10851776 MS.gene039653:CDS
AATGGTTTGTTTAATGGGAA+TGG 0.437841 3.4:+10849410 MS.gene039653:CDS
CTTCGGACAAGATATTGAAT+TGG 0.439713 3.4:+10849687 MS.gene039653:CDS
TGGGGAAAGGTAGGTTTAGT+TGG 0.440017 3.4:+10849147 MS.gene039653:CDS
AAGAAAGGAACTCATGGTAA+TGG 0.441568 3.4:+10849752 MS.gene039653:CDS
CACTTTCGAGATACAAGTCC+TGG 0.443801 3.4:+10852937 MS.gene039653:CDS
AAATCTGCATTTGATGAGTT+GGG 0.447343 3.4:+10849836 MS.gene039653:CDS
GGGACTTATATAGGTTCATC+TGG 0.447511 3.4:+10849224 MS.gene039653:CDS
CTGCTTATTATAAACACGTC+CGG 0.448129 3.4:+10851741 MS.gene039653:CDS
AATCAGCAACTGCAAAGAAA+AGG 0.448593 3.4:+10848895 MS.gene039653:CDS
TTCCATCTAAATTCACATGA+AGG 0.448605 3.4:-10850782 None:intergenic
TGATACTTATAAAGGGAATT+GGG 0.449590 3.4:+10849247 MS.gene039653:CDS
ATGGACATGGTAGGTATCAA+TGG 0.450321 3.4:+10849354 MS.gene039653:CDS
TGAATGGCATTGTCAAAGCC+TGG 0.453631 3.4:+10848856 MS.gene039653:CDS
CTAGTGATGCTCATCTTGAA+TGG 0.455044 3.4:+10849591 MS.gene039653:CDS
TGAGTTCCTTTCTTATGAAT+CGG 0.455684 3.4:-10849743 None:intergenic
AGTGGTACTTATTATCCATC+TGG 0.456958 3.4:+10849566 MS.gene039653:CDS
AGAGCCAACAACAACACTTA+AGG 0.458492 3.4:+10852037 MS.gene039653:CDS
TTTCCTAACTGTTGATTCCC+AGG 0.463471 3.4:-10848874 None:intergenic
GTTGGCTCTACTTCTGCCTC+CGG 0.470271 3.4:-10852023 None:intergenic
TATGTGGGAATGAAGCTCTT+CGG 0.470678 3.4:+10851375 MS.gene039653:CDS
AATTATGGATTACAGTATGT+TGG 0.471440 3.4:+10852906 MS.gene039653:CDS
CTTGTTATATGCATGGTAAA+GGG 0.472980 3.4:+10849204 MS.gene039653:CDS
GAATAGGTATGATGGTTGTT+GGG 0.474191 3.4:+10849454 MS.gene039653:CDS
TATGTAGGTGAATGGATTCA+AGG 0.474984 3.4:+10849116 MS.gene039653:CDS
TCTATTTGACGAACGATGAC+CGG 0.479278 3.4:+10851432 MS.gene039653:CDS
CTAAACGTACCATTCCCTTT+CGG 0.479325 3.4:-10849488 None:intergenic
TGGTCGCACTACTGATAAAC+CGG 0.482177 3.4:+10852004 MS.gene039653:CDS
CATAGACGGTTTGACTTGAA+AGG 0.488527 3.4:+10851972 MS.gene039653:CDS
CATCTGGTGATACTTATAAA+GGG 0.494249 3.4:+10849240 MS.gene039653:CDS
GTACAATGATGTGGCAAAAT+GGG 0.495315 3.4:+10849432 MS.gene039653:CDS
GGACAAGATATTGAATTGGC+CGG 0.497558 3.4:+10849691 MS.gene039653:CDS
TAGTGATGCTCATCTTGAAT+GGG 0.499937 3.4:+10849592 MS.gene039653:CDS
CAATATCTTGTCCGAAGGAT+AGG 0.500345 3.4:-10849681 None:intergenic
ACTTGTTATATGCATGGTAA+AGG 0.500619 3.4:+10849203 MS.gene039653:CDS
TCAAGTGATGCACTTGGAGC+AGG 0.501043 3.4:-10850677 None:intergenic
AACAGGAAGTGCACAAAAGA+AGG 0.502174 3.4:+10851817 MS.gene039653:CDS
AAGCCTGGGAATCAACAGTT+AGG 0.503594 3.4:+10848871 MS.gene039653:CDS
CCTTTATCTTCCTCTAAACC+CGG 0.504792 3.4:-10849710 None:intergenic
AGACTTTCAAGAGAATGAGC+AGG 0.504965 3.4:+10848829 None:intergenic
TATTTCGGTTGCAGAAGTCC+TGG 0.509138 3.4:+10852078 MS.gene039653:CDS
ATCAGCAACTGCAAAGAAAA+GGG 0.510464 3.4:+10848896 MS.gene039653:CDS
GAGGCAATTCTGTTCAAAGC+TGG 0.510720 3.4:+10849858 MS.gene039653:CDS
GTTGTATGTATGTAGGTGAA+TGG 0.511069 3.4:+10849108 MS.gene039653:CDS
CCTGCAAAATTCTTCGAACC+AGG 0.516023 3.4:-10852096 None:intergenic
TTCAAGACTTGTTATATGCA+TGG 0.518520 3.4:+10849197 MS.gene039653:CDS
ATTGATATCATGTAATCAGC+AGG 0.520915 3.4:-10851353 None:intergenic
CCTCCATCATCGAATTCAGA+TGG 0.521013 3.4:-10853003 None:intergenic
TATATTGGTCAATGGAGGAA+TGG 0.521050 3.4:+10849392 MS.gene039653:CDS
ATTGATGGTTGTATGTATGT+AGG 0.525013 3.4:+10849101 MS.gene039653:CDS
TGCTTATTATAAACACGTCC+GGG 0.526968 3.4:+10851742 MS.gene039653:CDS
GGTAATGAGAGTTATCCTAA+TGG 0.527045 3.4:+10849293 MS.gene039653:CDS
GACAAGATATTGAATTGGCC+GGG 0.530886 3.4:+10849692 MS.gene039653:CDS
GGAACCATTATATTGGTCAA+TGG 0.532331 3.4:+10849384 MS.gene039653:CDS
CTCAATATGTCATCCATAGA+CGG 0.533506 3.4:+10851958 MS.gene039653:CDS
CCTTCATATGTAGCACCACT+AGG 0.535657 3.4:-10849170 None:intergenic
TCCATCTAAATTCACATGAA+GGG 0.538947 3.4:-10850781 None:intergenic
CTGCATCCACTCCTGAAAGT+CGG 0.542054 3.4:-10853029 None:intergenic
CTCCATCATCGAATTCAGAT+GGG 0.542680 3.4:-10853002 None:intergenic
TCTACATTGGCTACAGACAT+TGG 0.544183 3.4:-10848936 None:intergenic
ATGGATTACAGTATGTTGGT+TGG 0.545087 3.4:+10852910 MS.gene039653:CDS
CCTTTAGATATAGTCTCTCC+TGG 0.546752 3.4:-10849920 None:intergenic
CGGACGTGTTTATAATAAGC+AGG 0.548622 3.4:-10851740 None:intergenic
GTCGTCATCGTCTTCACAAG+AGG 0.549154 3.4:+10848986 MS.gene039653:CDS
CCATCAGCTGAACTCCGTCT+AGG 0.552578 3.4:-10849779 None:intergenic
CAAAATGGGAATAGGTATGA+TGG 0.552931 3.4:+10849446 MS.gene039653:CDS
TTCATGCAGACAAGTTGATA+GGG 0.556313 3.4:+10852858 MS.gene039653:intron
GATTACATGATATCAATATG+TGG 0.557421 3.4:+10851359 MS.gene039653:CDS
GGACATTACGACCTATCCTT+CGG 0.558170 3.4:+10849670 MS.gene039653:CDS
CTTATGTTGAATCTGCAACT+AGG 0.559603 3.4:+10849959 MS.gene039653:CDS
TATGCATACCTGAATACTAC+CGG 0.561063 3.4:-10850815 None:intergenic
AGGGTGAGGTGGCGTATGCT+TGG 0.561454 3.4:-10850762 None:intergenic
AATGGTTTGCCGAAAGGGAA+TGG 0.561505 3.4:+10849479 MS.gene039653:CDS
TGGACTAGATTTCCACCAGA+AGG 0.561843 3.4:+10850737 MS.gene039653:CDS
CCAGGAGAGACTATATCTAA+AGG 0.568260 3.4:+10849920 MS.gene039653:CDS
GATAAGTTTCCACATGGTCA+AGG 0.568574 3.4:+10849065 MS.gene039653:CDS
TGGGAAAATGGTTTGCCGAA+AGG 0.575980 3.4:+10849473 MS.gene039653:CDS
TCAACAGTGAAAACCTCTTG+AGG 0.576516 3.4:-10849617 None:intergenic
GAATGGCATTGTCAAAGCCT+GGG 0.576526 3.4:+10848857 MS.gene039653:CDS
ATGGTAATGGGAAGCCTAGA+CGG 0.578110 3.4:+10849765 MS.gene039653:CDS
GTTGAAAAGACTATGCCAAA+TGG 0.578913 3.4:+10849017 MS.gene039653:CDS
ATTACATGATATCAATATGT+GGG 0.581330 3.4:+10851360 MS.gene039653:CDS
GACGGAGTTCAGCTGATGGA+AGG 0.583727 3.4:+10849783 MS.gene039653:CDS
GTCATCTTCATCATCTACAT+TGG 0.584009 3.4:-10848949 None:intergenic
ATAAAAGCTCCTAAAAGACC+AGG 0.584431 3.4:+10849902 MS.gene039653:CDS
CCTAGTGGTGCTACATATGA+AGG 0.584675 3.4:+10849170 MS.gene039653:CDS
TCTTGAATGGGATCCTCAAG+AGG 0.584761 3.4:+10849604 MS.gene039653:CDS
ATTCATAAGAAAGGAACTCA+TGG 0.587474 3.4:+10849746 MS.gene039653:CDS
GACTTTCAAGAGAATGAGCA+GGG 0.592006 3.4:+10848830 None:intergenic
ACCCCATCTGAATTCGATGA+TGG 0.596388 3.4:+10853000 MS.gene039653:CDS
CCTAGACGGAGTTCAGCTGA+TGG 0.596547 3.4:+10849779 MS.gene039653:CDS
CCATTGGACAGACATTCCGT+TGG 0.597510 3.4:+10850650 MS.gene039653:intron
GCTCCCGAACTGCGACCGCA+AGG 0.599381 3.4:-10852973 None:intergenic
CCAGCGTATTCTCAAAAGCC+CGG 0.600357 3.4:-10851760 None:intergenic
CCATCTGAATTCGATGATGG+AGG 0.601211 3.4:+10853003 MS.gene039653:CDS
TTCAAATCAAGTGATGCACT+TGG 0.601607 3.4:-10850683 None:intergenic
CTTAGTAATCACAGCTCTGA+AGG 0.602212 3.4:+10849806 MS.gene039653:CDS
GGCGGCAATGTTACACCTTG+CGG 0.604078 3.4:+10852958 MS.gene039653:CDS
CAAGGTGTAACATTGCCGCC+AGG 0.605952 3.4:-10852955 None:intergenic
AAGGGAATGGTACGTTTAGG+TGG 0.606012 3.4:+10849492 MS.gene039653:CDS
ATCTCATCATAGATCCTAGT+CGG 0.606584 3.4:+10853055 MS.gene039653:CDS
CTAAATTCACATGAAGGGTG+AGG 0.607299 3.4:-10850776 None:intergenic
CAATTCAATATCTTGTCCGA+AGG 0.609486 3.4:-10849686 None:intergenic
GCATCCACTCCTGAAAGTCG+GGG 0.612590 3.4:-10853027 None:intergenic
GGTACGTTTAGGTGGTCTGA+TGG 0.617080 3.4:+10849500 MS.gene039653:CDS
GTGTGCAAAATGGACATGGT+AGG 0.621136 3.4:+10849345 MS.gene039653:CDS
GGTAGGTTTAGTTGGCCTAG+TGG 0.621887 3.4:+10849155 MS.gene039653:CDS
ACCATTATATTGGTCAATGG+AGG 0.622374 3.4:+10849387 MS.gene039653:CDS
CATCCACTCCTGAAAGTCGG+GGG 0.623264 3.4:-10853026 None:intergenic
AAAGATCCTAAAGAACAAAG+TGG 0.627694 3.4:+10849548 MS.gene039653:CDS
TAGATGGAAAGACTACTGTC+CGG 0.632964 3.4:+10850796 MS.gene039653:CDS
AATTCACATGAAGGGTGAGG+TGG 0.633039 3.4:-10850773 None:intergenic
ATGTATGATTTGTCCTTGTG+AGG 0.634796 3.4:+10849649 MS.gene039653:CDS
TGAGCATCACTAGAACCAGA+TGG 0.635426 3.4:-10849581 None:intergenic
AGAATGAGCAGGGAGCTGAA+TGG 0.636348 3.4:+10848840 None:intergenic
AGATACTTACCTTGACCATG+TGG 0.643398 3.4:-10849074 None:intergenic
GTATGCTTGGATCCTTCTGG+TGG 0.648961 3.4:-10850749 None:intergenic
TCTGCATTTGATGAGTTGGG+AGG 0.661937 3.4:+10849839 MS.gene039653:CDS
AAGGGTGTGCAAAATGGACA+TGG 0.663197 3.4:+10849341 MS.gene039653:CDS
ATGGGAATGGTACAATGATG+TGG 0.671388 3.4:+10849423 MS.gene039653:CDS
TGATTGAAAATATACCGACT+AGG 0.671964 3.4:-10853069 None:intergenic
AGTAATCACAGCTCTGAAGG+AGG 0.672594 3.4:+10849809 MS.gene039653:CDS
TGGCTTGATAAGTTTCCACA+TGG 0.676296 3.4:+10849059 MS.gene039653:CDS
TCCATCATCGAATTCAGATG+GGG 0.681693 3.4:-10853001 None:intergenic
ACTTGGAGCAGGTCTTCCAA+CGG 0.684197 3.4:-10850666 None:intergenic
TAGGTCGTAATGTCCTCACA+AGG 0.705306 3.4:-10849662 None:intergenic
TTTCGAGATACAAGTCCTGG+CGG 0.727190 3.4:+10852940 MS.gene039653:CDS
TCGCACTACTGATAAACCGG+AGG 0.733166 3.4:+10852007 MS.gene039653:CDS
AAAGCTGGAATAAATCGCCG+CGG 0.771520 3.4:+10849873 MS.gene039653:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTGACTTAAATTTTATATTT+CGG + chr3.4:10852063-10852082 MS.gene039653:CDS 10.0%
!! AACTTTATATATAAGTTAGA+AGG + chr3.4:10852739-10852758 MS.gene039653:intron 15.0%
!! ATAAATTACATTTCAAAAGA+AGG - chr3.4:10852595-10852614 None:intergenic 15.0%
!! ATTATCGAATAAAATTGATT+TGG - chr3.4:10850313-10850332 None:intergenic 15.0%
!! CTAAATTACAAATATTTGAT+AGG - chr3.4:10852784-10852803 None:intergenic 15.0%
!! CTGAATACATTTATATAAAA+GGG + chr3.4:10850202-10850221 MS.gene039653:intron 15.0%
!! GATATTTAACATAAGAAATA+GGG + chr3.4:10852424-10852443 MS.gene039653:intron 15.0%
!! TCTGAATACATTTATATAAA+AGG + chr3.4:10850201-10850220 MS.gene039653:intron 15.0%
!! TGAATACATTTATATAAAAG+GGG + chr3.4:10850203-10850222 MS.gene039653:intron 15.0%
!! TGATATTTAACATAAGAAAT+AGG + chr3.4:10852423-10852442 MS.gene039653:intron 15.0%
!! TTATATATAAAGTTTCAAAC+AGG - chr3.4:10852733-10852752 None:intergenic 15.0%
!!! GTGTTTATAAACTTTTAATT+TGG + chr3.4:10851850-10851869 MS.gene039653:intron 15.0%
!! AAAAAATATTACATGATTGC+AGG + chr3.4:10851700-10851719 MS.gene039653:intron 20.0%
!! ATTACATGATATCAATATGT+GGG + chr3.4:10851360-10851379 MS.gene039653:CDS 20.0%
!! GAAAAAAAAAAGACTATGTT+TGG - chr3.4:10850401-10850420 None:intergenic 20.0%
!! GAATACATTTATATAAAAGG+GGG + chr3.4:10850204-10850223 MS.gene039653:intron 20.0%
!!! AAACATATTATTAGCTTCTT+CGG + chr3.4:10852207-10852226 MS.gene039653:intron 20.0%
!!! CTTTTTTTTTTTTTTGACGT+CGG + chr3.4:10852816-10852835 MS.gene039653:intron 20.0%
!!! TATTTATGTAAGCAAAGTTT+TGG + chr3.4:10850858-10850877 MS.gene039653:intron 20.0%
!!! TGATTGCATTTATATTTTCA+GGG + chr3.4:10851304-10851323 MS.gene039653:intron 20.0%
!!! TGCAATCATGTAATATTTTT+TGG - chr3.4:10851701-10851720 None:intergenic 20.0%
!!! TTAACATTGATAGCTATAAA+TGG + chr3.4:10850545-10850564 MS.gene039653:intron 20.0%
!!! TTGATTGCATTTATATTTTC+AGG + chr3.4:10851303-10851322 MS.gene039653:intron 20.0%
! AAAAATGGGAACCATTATAT+TGG + chr3.4:10849377-10849396 MS.gene039653:CDS 25.0%
! ATCATATGACTAAAAATTGC+AGG - chr3.4:10852375-10852394 None:intergenic 25.0%
! GAAATTTCCTAATGAAAACT+CGG + chr3.4:10850500-10850519 MS.gene039653:intron 25.0%
! GATTACATGATATCAATATG+TGG + chr3.4:10851359-10851378 MS.gene039653:CDS 25.0%
! GCTTAAATTAGAATCAATTC+TGG + chr3.4:10850284-10850303 MS.gene039653:intron 25.0%
! GGGTTATGAATTTGAAAAAT+GGG + chr3.4:10849267-10849286 MS.gene039653:CDS 25.0%
! GGTTATGAATTTGAAAAATG+GGG + chr3.4:10849268-10849287 MS.gene039653:CDS 25.0%
! GTCACATTTCATTAAATTTC+AGG + chr3.4:10851902-10851921 MS.gene039653:intron 25.0%
! GTTGAGAGAATTGATAAAAA+AGG - chr3.4:10851530-10851549 None:intergenic 25.0%
! GTTTGAAAGTTGAAACTTTA+AGG - chr3.4:10852478-10852497 None:intergenic 25.0%
! TAAATTAGAATCAATTCTGG+AGG + chr3.4:10850287-10850306 MS.gene039653:intron 25.0%
! TCTAAATTCACAGAATATGA+GGG + chr3.4:10851275-10851294 MS.gene039653:intron 25.0%
! TCTTCAACATGAAAGAATTA+TGG + chr3.4:10852891-10852910 MS.gene039653:CDS 25.0%
! TGATACTTATAAAGGGAATT+GGG + chr3.4:10849247-10849266 MS.gene039653:CDS 25.0%
! TGATAGGAAAAACTGTATTA+GGG - chr3.4:10852768-10852787 None:intergenic 25.0%
! TGGGTTATGAATTTGAAAAA+TGG + chr3.4:10849266-10849285 MS.gene039653:CDS 25.0%
! TTACTAATTTCTTGTACCAT+TGG + chr3.4:10850634-10850653 MS.gene039653:intron 25.0%
! TTATATCTAGCCAATGAAAA+TGG - chr3.4:10851501-10851520 None:intergenic 25.0%
! TTCAAAAGAAGGCTAAAATA+AGG - chr3.4:10852584-10852603 None:intergenic 25.0%
! TTGATAGGAAAAACTGTATT+AGG - chr3.4:10852769-10852788 None:intergenic 25.0%
! TTGTAAGCATATAAAGTGAA+GGG - chr3.4:10851552-10851571 None:intergenic 25.0%
! TTTGTAAGCATATAAAGTGA+AGG - chr3.4:10851553-10851572 None:intergenic 25.0%
!! AAAATCAATTCCACAACTTT+TGG + chr3.4:10850346-10850365 MS.gene039653:intron 25.0%
!! AAAATTGATTCCAAAAGTTG+TGG - chr3.4:10850359-10850378 None:intergenic 25.0%
!! AATTATGGATTACAGTATGT+TGG + chr3.4:10852906-10852925 MS.gene039653:CDS 25.0%
!! TTCCTTGATTCTAATTTTCA+CGG + chr3.4:10850606-10850625 MS.gene039653:intron 25.0%
!!! AAATAAGGTCATTTTGTTCA+CGG - chr3.4:10852569-10852588 None:intergenic 25.0%
!!! GTTTGTTTTGAAGTTATTGA+TGG + chr3.4:10852237-10852256 MS.gene039653:intron 25.0%
!!! TTCATTTTAAGTTGCAAACA+CGG + chr3.4:10851003-10851022 MS.gene039653:intron 25.0%
!!! TTGTCTTTACTTTTGAACTT+TGG + chr3.4:10852617-10852636 MS.gene039653:intron 25.0%
AAAATCTGCATTTGATGAGT+TGG + chr3.4:10849835-10849854 MS.gene039653:CDS 30.0%
AAACCAAAACTTGTAAAGTG+TGG - chr3.4:10852183-10852202 None:intergenic 30.0%
AAAGATCCTAAAGAACAAAG+TGG + chr3.4:10849548-10849567 MS.gene039653:CDS 30.0%
AAATCTGCATTTGATGAGTT+GGG + chr3.4:10849836-10849855 MS.gene039653:CDS 30.0%
ACTCAGAAACAATAAGAGAA+GGG - chr3.4:10850423-10850442 None:intergenic 30.0%
AGGCTAAAAATCAATTGTAG+AGG + chr3.4:10850243-10850262 MS.gene039653:intron 30.0%
ATGAATTTGAAAAATGGGGA+TGG + chr3.4:10849272-10849291 MS.gene039653:CDS 30.0%
ATTCATAAGAAAGGAACTCA+TGG + chr3.4:10849746-10849765 MS.gene039653:CDS 30.0%
ATTGATATCATGTAATCAGC+AGG - chr3.4:10851356-10851375 None:intergenic 30.0%
CATCTGGTGATACTTATAAA+GGG + chr3.4:10849240-10849259 MS.gene039653:CDS 30.0%
CCATCATAAAAATCACCATT+AGG - chr3.4:10849311-10849330 None:intergenic 30.0%
GAGCTTAATTATTGTGTGTT+TGG + chr3.4:10850061-10850080 MS.gene039653:intron 30.0%
GCATTCAATGAATGAATGAA+AGG + chr3.4:10852684-10852703 MS.gene039653:intron 30.0%
GTAGGTATCAATGGAAAAAT+GGG + chr3.4:10849363-10849382 MS.gene039653:CDS 30.0%
GTCTAAATTCACAGAATATG+AGG + chr3.4:10851274-10851293 MS.gene039653:intron 30.0%
GTGAAAATTAGAATCAAGGA+AGG - chr3.4:10850607-10850626 None:intergenic 30.0%
GTGATACTTATAAAGGGAAT+TGG + chr3.4:10849246-10849265 MS.gene039653:CDS 30.0%
TAAGTACCACTTTGTTCTTT+AGG - chr3.4:10849557-10849576 None:intergenic 30.0%
TCAATATATATTCTCCACGT+GGG - chr3.4:10850482-10850501 None:intergenic 30.0%
TCATCTGGTGATACTTATAA+AGG + chr3.4:10849239-10849258 MS.gene039653:CDS 30.0%
TCCATCTAAATTCACATGAA+GGG - chr3.4:10850784-10850803 None:intergenic 30.0%
TGAAAACTATCACATCAAAG+TGG - chr3.4:10851634-10851653 None:intergenic 30.0%
TGAGTTCCTTTCTTATGAAT+CGG - chr3.4:10849746-10849765 None:intergenic 30.0%
TTACTCTCATATCATCTGTA+TGG + chr3.4:10850031-10850050 MS.gene039653:intron 30.0%
TTCAATATATATTCTCCACG+TGG - chr3.4:10850483-10850502 None:intergenic 30.0%
TTCCATCTAAATTCACATGA+AGG - chr3.4:10850785-10850804 None:intergenic 30.0%
! AAAGTGAGTTCCATTTTCAT+TGG + chr3.4:10851488-10851507 MS.gene039653:intron 30.0%
! AACGTTGTTGTCGTTTAAAA+AGG - chr3.4:10852519-10852538 None:intergenic 30.0%
! AAGGTTCAACATTTTGTTCA+CGG - chr3.4:10852500-10852519 None:intergenic 30.0%
! ATGGATTCAAGGTTTTACAA+TGG + chr3.4:10849127-10849146 MS.gene039653:CDS 30.0%
! ATTGATGGTTGTATGTATGT+AGG + chr3.4:10849101-10849120 MS.gene039653:CDS 30.0%
! CCTAATGGTGATTTTTATGA+TGG + chr3.4:10849308-10849327 MS.gene039653:CDS 30.0%
! CTTGTTATATGCATGGTAAA+GGG + chr3.4:10849204-10849223 MS.gene039653:CDS 30.0%
! GAAAAACCGATTCATAAGAA+AGG + chr3.4:10849737-10849756 MS.gene039653:CDS 30.0%
! TATGATGGTGAATGGAAAAA+GGG + chr3.4:10849323-10849342 MS.gene039653:CDS 30.0%
! TCTGATGGTAGTTTTTATGT+CGG + chr3.4:10849515-10849534 MS.gene039653:CDS 30.0%
! TGGATTCAAGGTTTTACAAT+GGG + chr3.4:10849128-10849147 MS.gene039653:CDS 30.0%
! TTATGATGGTGAATGGAAAA+AGG + chr3.4:10849322-10849341 MS.gene039653:CDS 30.0%
! TTTTACTTCTGCTTTCTTCA+TGG - chr3.4:10851471-10851490 None:intergenic 30.0%
!! AATGGTTTGTTTAATGGGAA+TGG + chr3.4:10849410-10849429 MS.gene039653:CDS 30.0%
!! ACTATGTTTGGTTTCACTTT+TGG - chr3.4:10850389-10850408 None:intergenic 30.0%
!! ACTTGTTATATGCATGGTAA+AGG + chr3.4:10849203-10849222 MS.gene039653:CDS 30.0%
!! GTGATTTTTATGATGGTGAA+TGG + chr3.4:10849315-10849334 MS.gene039653:CDS 30.0%
!! TTCAAGACTTGTTATATGCA+TGG + chr3.4:10849197-10849216 MS.gene039653:CDS 30.0%
!!! TCATGGTTTTGATCATATAC+CGG - chr3.4:10851454-10851473 None:intergenic 30.0%
!!! TCATTTTAAGTTGCAAACAC+GGG + chr3.4:10851004-10851023 MS.gene039653:intron 30.0%
!!! TTCCTGTTAGTTTTACACAA+TGG - chr3.4:10851805-10851824 None:intergenic 30.0%
AAGAAAGGAACTCATGGTAA+TGG + chr3.4:10849752-10849771 MS.gene039653:CDS 35.0%
AAGGTAAGTTAAATGACCTC+TGG - chr3.4:10852459-10852478 None:intergenic 35.0%
AATCAGCAACTGCAAAGAAA+AGG + chr3.4:10848895-10848914 MS.gene039653:CDS 35.0%
ACCATTATATTGGTCAATGG+AGG + chr3.4:10849387-10849406 MS.gene039653:CDS 35.0%
ACCCTTCATGTGAATTTAGA+TGG + chr3.4:10850780-10850799 MS.gene039653:CDS 35.0%
AGAAAGGAACTCATGGTAAT+GGG + chr3.4:10849753-10849772 MS.gene039653:CDS 35.0%
AGCGAGAATCTCTTTCTTAT+TGG - chr3.4:10850151-10850170 None:intergenic 35.0%
AGTGGTACTTATTATCCATC+TGG + chr3.4:10849566-10849585 MS.gene039653:CDS 35.0%
ATAAAAGCTCCTAAAAGACC+AGG + chr3.4:10849902-10849921 MS.gene039653:CDS 35.0%
ATCAGCAACTGCAAAGAAAA+GGG + chr3.4:10848896-10848915 MS.gene039653:CDS 35.0%
ATGGTCAAGGTAAGTATCTT+TGG + chr3.4:10849078-10849097 MS.gene039653:CDS 35.0%
CAAAATGGGAATAGGTATGA+TGG + chr3.4:10849446-10849465 MS.gene039653:CDS 35.0%
CAAATAGTCTCTTACTGTGT+TGG + chr3.4:10851237-10851256 MS.gene039653:intron 35.0%
CAATTCAATATCTTGTCCGA+AGG - chr3.4:10849689-10849708 None:intergenic 35.0%
CACAAAAGAAGGTAATGTCT+AGG + chr3.4:10851828-10851847 MS.gene039653:intron 35.0%
CACTCAGAAACAATAAGAGA+AGG - chr3.4:10850424-10850443 None:intergenic 35.0%
CATGGTAAAGGGACTTATAT+AGG + chr3.4:10849215-10849234 MS.gene039653:CDS 35.0%
CCTGTGTAAAAATCACCATT+TGG - chr3.4:10849035-10849054 None:intergenic 35.0%
CTAGTCCAAACTTTCTCTTT+GGG - chr3.4:10850725-10850744 None:intergenic 35.0%
CTCAATATGTCATCCATAGA+CGG + chr3.4:10851958-10851977 MS.gene039653:CDS 35.0%
CTCCATTGTGTAAAACTAAC+AGG + chr3.4:10851800-10851819 MS.gene039653:CDS 35.0%
CTGCTTATTATAAACACGTC+CGG + chr3.4:10851741-10851760 MS.gene039653:CDS 35.0%
CTTATGTTGAATCTGCAACT+AGG + chr3.4:10849959-10849978 MS.gene039653:CDS 35.0%
CTTCGGACAAGATATTGAAT+TGG + chr3.4:10849687-10849706 MS.gene039653:CDS 35.0%
GAATAGGTATGATGGTTGTT+GGG + chr3.4:10849454-10849473 MS.gene039653:CDS 35.0%
GAGAAGATAGAGGCTAAAAT+AGG + chr3.4:10851062-10851081 MS.gene039653:intron 35.0%
GGAACCATTATATTGGTCAA+TGG + chr3.4:10849384-10849403 MS.gene039653:CDS 35.0%
GGTAAGTATCTTTGGATTGA+TGG + chr3.4:10849086-10849105 MS.gene039653:CDS 35.0%
GGTAATGAGAGTTATCCTAA+TGG + chr3.4:10849293-10849312 MS.gene039653:CDS 35.0%
GGTAGGTATCAATGGAAAAA+TGG + chr3.4:10849362-10849381 MS.gene039653:CDS 35.0%
GTACAATGATGTGGCAAAAT+GGG + chr3.4:10849432-10849451 MS.gene039653:CDS 35.0%
GTCATCTTCATCATCTACAT+TGG - chr3.4:10848952-10848971 None:intergenic 35.0%
GTTGAAAAGACTATGCCAAA+TGG + chr3.4:10849017-10849036 MS.gene039653:CDS 35.0%
GTTGTATGTATGTAGGTGAA+TGG + chr3.4:10849108-10849127 MS.gene039653:CDS 35.0%
TAGGAAAAACTGTATTAGGG+AGG - chr3.4:10852765-10852784 None:intergenic 35.0%
TAGTGATGCTCATCTTGAAT+GGG + chr3.4:10849592-10849611 MS.gene039653:CDS 35.0%
TATATTGGTCAATGGAGGAA+TGG + chr3.4:10849392-10849411 MS.gene039653:CDS 35.0%
TATGATGGTTGTTGGGAAAA+TGG + chr3.4:10849461-10849480 MS.gene039653:CDS 35.0%
TATGCATACCTGAATACTAC+CGG - chr3.4:10850818-10850837 None:intergenic 35.0%
TCATTGAATGCGAGCAAAAA+TGG - chr3.4:10852675-10852694 None:intergenic 35.0%
TCCTCCATTGACCAATATAA+TGG - chr3.4:10849391-10849410 None:intergenic 35.0%
TCTAGTCCAAACTTTCTCTT+TGG - chr3.4:10850726-10850745 None:intergenic 35.0%
TGCCGTGAAAATTAGAATCA+AGG - chr3.4:10850611-10850630 None:intergenic 35.0%
TGCTTATTATAAACACGTCC+GGG + chr3.4:10851742-10851761 MS.gene039653:CDS 35.0%
TTCAAATCAAGTGATGCACT+TGG - chr3.4:10850686-10850705 None:intergenic 35.0%
TTCTGTCATTCAACTAAGAG+AGG - chr3.4:10852303-10852322 None:intergenic 35.0%
TTGATCCCAAAGAGAAAGTT+TGG + chr3.4:10850717-10850736 MS.gene039653:CDS 35.0%
TTGTGATAGAGAGAAGATAG+AGG + chr3.4:10851052-10851071 MS.gene039653:intron 35.0%
TTTGGACGGGAATTCATTAA+AGG - chr3.4:10852545-10852564 None:intergenic 35.0%
! ACACCACACTTTACAAGTTT+TGG + chr3.4:10852177-10852196 MS.gene039653:intron 35.0%
! ACAGTTACCGAGTTTTCATT+AGG - chr3.4:10850510-10850529 None:intergenic 35.0%
! AGATCCTTAAGTGTTGTTGT+TGG - chr3.4:10852044-10852063 None:intergenic 35.0%
! ATGGATTACAGTATGTTGGT+TGG + chr3.4:10852910-10852929 MS.gene039653:CDS 35.0%
! ATGTATGATTTGTCCTTGTG+AGG + chr3.4:10849649-10849668 MS.gene039653:CDS 35.0%
! CCAAATGGTGATTTTTACAC+AGG + chr3.4:10849032-10849051 MS.gene039653:CDS 35.0%
! GGATTCAAGGTTTTACAATG+GGG + chr3.4:10849129-10849148 MS.gene039653:CDS 35.0%
! GTGATTTTTACACAGGACAA+TGG + chr3.4:10849039-10849058 MS.gene039653:CDS 35.0%
! TATGTAGGTGAATGGATTCA+AGG + chr3.4:10849116-10849135 MS.gene039653:CDS 35.0%
!! ATGTTTGGTTTCACTTTTGG+AGG - chr3.4:10850386-10850405 None:intergenic 35.0%
!! GGAGGAATGGTTTGTTTAAT+GGG + chr3.4:10849405-10849424 MS.gene039653:CDS 35.0%
!! GTAGTTTTTATGTCGGTGTT+TGG + chr3.4:10849522-10849541 MS.gene039653:CDS 35.0%
!! TGGAGGAATGGTTTGTTTAA+TGG + chr3.4:10849404-10849423 MS.gene039653:CDS 35.0%
!! TTCATGCAGACAAGTTGATA+GGG + chr3.4:10852858-10852877 MS.gene039653:intron 35.0%
!!! AAAAAGCTTCCACTTTTTCC+AGG - chr3.4:10851413-10851432 None:intergenic 35.0%
!!! ATTTTGTTCACGGTTTTGGA+CGG - chr3.4:10852559-10852578 None:intergenic 35.0%
!!! CATTTTAAGTTGCAAACACG+GGG + chr3.4:10851005-10851024 MS.gene039653:intron 35.0%
!!! CTGTTAGTTTTACACAATGG+AGG - chr3.4:10851802-10851821 None:intergenic 35.0%
AGAGCCAACAACAACACTTA+AGG + chr3.4:10852037-10852056 MS.gene039653:CDS 40.0%
AGATACTTACCTTGACCATG+TGG - chr3.4:10849077-10849096 None:intergenic 40.0%
ATGGACATGGTAGGTATCAA+TGG + chr3.4:10849354-10849373 MS.gene039653:CDS 40.0%
ATGGGAATGGTACAATGATG+TGG + chr3.4:10849423-10849442 MS.gene039653:CDS 40.0%
CAATATCAACCATGCACAAG+AGG - chr3.4:10851193-10851212 None:intergenic 40.0%
CAATATCTTGTCCGAAGGAT+AGG - chr3.4:10849684-10849703 None:intergenic 40.0%
CAGGTTCGCTTTGTCATAAT+GGG + chr3.4:10851921-10851940 MS.gene039653:intron 40.0%
CATGATTCGTTCACCTAGTT+AGG - chr3.4:10850885-10850904 None:intergenic 40.0%
CCAGGAGAGACTATATCTAA+AGG + chr3.4:10849920-10849939 MS.gene039653:CDS 40.0%
CCTTTAGATATAGTCTCTCC+TGG - chr3.4:10849923-10849942 None:intergenic 40.0%
CCTTTATCTTCCTCTAAACC+CGG - chr3.4:10849713-10849732 None:intergenic 40.0%
CGGACGTGTTTATAATAAGC+AGG - chr3.4:10851743-10851762 None:intergenic 40.0%
CTAAACGTACCATTCCCTTT+CGG - chr3.4:10849491-10849510 None:intergenic 40.0%
CTAAATTCACATGAAGGGTG+AGG - chr3.4:10850779-10850798 None:intergenic 40.0%
CTACAGGCACACATAAATAG+TGG - chr3.4:10852149-10852168 None:intergenic 40.0%
CTAGTGATGCTCATCTTGAA+TGG + chr3.4:10849591-10849610 MS.gene039653:CDS 40.0%
CTATCAACTTGTCTGCATGA+AGG - chr3.4:10852859-10852878 None:intergenic 40.0%
CTCCATCATCGAATTCAGAT+GGG - chr3.4:10853005-10853024 None:intergenic 40.0%
GACAAGATATTGAATTGGCC+GGG + chr3.4:10849692-10849711 MS.gene039653:CDS 40.0%
GATAAGTTTCCACATGGTCA+AGG + chr3.4:10849065-10849084 MS.gene039653:CDS 40.0%
GGAATAGGTATGATGGTTGT+TGG + chr3.4:10849453-10849472 MS.gene039653:CDS 40.0%
GGACAAGATATTGAATTGGC+CGG + chr3.4:10849691-10849710 MS.gene039653:CDS 40.0%
GGGACTTATATAGGTTCATC+TGG + chr3.4:10849224-10849243 MS.gene039653:CDS 40.0%
GGTACAATGATGTGGCAAAA+TGG + chr3.4:10849431-10849450 MS.gene039653:CDS 40.0%
GGTAGTATTCAGGTATGCAT+AGG + chr3.4:10850817-10850836 MS.gene039653:intron 40.0%
GTCGATTGTAACTTGAGAGT+AGG + chr3.4:10852263-10852282 MS.gene039653:intron 40.0%
GTTCCAAAGTAAAGCCAAAG+TGG - chr3.4:10852645-10852664 None:intergenic 40.0%
TAGATGGAAAGACTACTGTC+CGG + chr3.4:10850796-10850815 MS.gene039653:CDS 40.0%
TATGTGGGAATGAAGCTCTT+CGG + chr3.4:10851375-10851394 MS.gene039653:CDS 40.0%
TCAACAGTGAAAACCTCTTG+AGG - chr3.4:10849620-10849639 None:intergenic 40.0%
TCAGGTTCGCTTTGTCATAA+TGG + chr3.4:10851920-10851939 MS.gene039653:intron 40.0%
TCCATCATCGAATTCAGATG+GGG - chr3.4:10853004-10853023 None:intergenic 40.0%
TCTATTTGACGAACGATGAC+CGG + chr3.4:10851432-10851451 MS.gene039653:CDS 40.0%
TGAATCTGCAACTAGGTATC+AGG + chr3.4:10849966-10849985 MS.gene039653:CDS 40.0%
TGATGTGGCAAAATGGGAAT+AGG + chr3.4:10849438-10849457 MS.gene039653:CDS 40.0%
TGGCTTGATAAGTTTCCACA+TGG + chr3.4:10849059-10849078 MS.gene039653:CDS 40.0%
! AACAGGAAGTGCACAAAAGA+AGG + chr3.4:10851817-10851836 MS.gene039653:CDS 40.0%
! CAAGGTTTTACAATGGGGAA+AGG + chr3.4:10849134-10849153 MS.gene039653:CDS 40.0%
! CTTAGTAATCACAGCTCTGA+AGG + chr3.4:10849806-10849825 MS.gene039653:CDS 40.0%
! CTTTCAAGTCAAACCGTCTA+TGG - chr3.4:10851974-10851993 None:intergenic 40.0%
! GCAATTTTGCAGCTCATACA+AGG - chr3.4:10852353-10852372 None:intergenic 40.0%
! GTTTTACAATGGGGAAAGGT+AGG + chr3.4:10849138-10849157 MS.gene039653:CDS 40.0%
! TCTACATTGGCTACAGACAT+TGG - chr3.4:10848939-10848958 None:intergenic 40.0%
! TGGAAAAAGGGTGTGCAAAA+TGG + chr3.4:10849335-10849354 MS.gene039653:CDS 40.0%
!! ATAGTCTCTCCTGGTCTTTT+AGG - chr3.4:10849914-10849933 None:intergenic 40.0%
!! CATAGACGGTTTGACTTGAA+AGG + chr3.4:10851972-10851991 MS.gene039653:CDS 40.0%
!! CTTCATGCAGACAAGTTGAT+AGG + chr3.4:10852857-10852876 MS.gene039653:intron 40.0%
!! GCAAAGTTTTGGTCCTAACT+AGG + chr3.4:10850869-10850888 MS.gene039653:intron 40.0%
!! GGTCATTTTGTTCACGGTTT+TGG - chr3.4:10852563-10852582 None:intergenic 40.0%
!! TTTCCTAACTGTTGATTCCC+AGG - chr3.4:10848877-10848896 None:intergenic 40.0%
!! TTTGAACTTTGGTGCCACTT+TGG + chr3.4:10852628-10852647 MS.gene039653:intron 40.0%
!! TTTGGTTTCACTTTTGGAGG+AGG - chr3.4:10850383-10850402 None:intergenic 40.0%
!!! TTTTGTTCACGGTTTTGGAC+GGG - chr3.4:10852558-10852577 None:intergenic 40.0%
AAAGCTGGAATAAATCGCCG+CGG + chr3.4:10849873-10849892 MS.gene039653:CDS 45.0%
AAGCCTGGGAATCAACAGTT+AGG + chr3.4:10848871-10848890 MS.gene039653:CDS 45.0%
AAGGGAATGGTACGTTTAGG+TGG + chr3.4:10849492-10849511 MS.gene039653:CDS 45.0%
AATAGGGAAAACTGCACCAG+AGG + chr3.4:10852440-10852459 MS.gene039653:intron 45.0%
AATTCACATGAAGGGTGAGG+TGG - chr3.4:10850776-10850795 None:intergenic 45.0%
ACCCCATCTGAATTCGATGA+TGG + chr3.4:10853000-10853019 MS.gene039653:CDS 45.0%
ACTACTGTCCGGTAGTATTC+AGG + chr3.4:10850807-10850826 MS.gene039653:CDS 45.0%
ATGTGGGAATGAAGCTCTTC+GGG + chr3.4:10851376-10851395 MS.gene039653:CDS 45.0%
ATTGAATTGGCCGGGTTTAG+AGG + chr3.4:10849700-10849719 MS.gene039653:CDS 45.0%
CACTTTCGAGATACAAGTCC+TGG + chr3.4:10852937-10852956 MS.gene039653:CDS 45.0%
CCGGGTTTAGAGGAAGATAA+AGG + chr3.4:10849710-10849729 MS.gene039653:CDS 45.0%
CCTCCATCATCGAATTCAGA+TGG - chr3.4:10853006-10853025 None:intergenic 45.0%
CCTGCAAAATTCTTCGAACC+AGG - chr3.4:10852099-10852118 None:intergenic 45.0%
CCTTCATATGTAGCACCACT+AGG - chr3.4:10849173-10849192 None:intergenic 45.0%
CGAAAGGGAATGGTACGTTT+AGG + chr3.4:10849489-10849508 MS.gene039653:CDS 45.0%
CTCTCATCTCCTGGAAAAAG+TGG + chr3.4:10851401-10851420 MS.gene039653:CDS 45.0%
GAATGGCATTGTCAAAGCCT+GGG + chr3.4:10848857-10848876 MS.gene039653:CDS 45.0%
GACTTGAAAGGTTCGACGTT+TGG + chr3.4:10851984-10852003 MS.gene039653:CDS 45.0%
GAGGCAATTCTGTTCAAAGC+TGG + chr3.4:10849858-10849877 MS.gene039653:CDS 45.0%
GGACATTACGACCTATCCTT+CGG + chr3.4:10849670-10849689 MS.gene039653:CDS 45.0%
GGGGTTGCACGATAAATTAG+AGG + chr3.4:10850223-10850242 MS.gene039653:intron 45.0%
GTGTGCAAAATGGACATGGT+AGG + chr3.4:10849345-10849364 MS.gene039653:CDS 45.0%
TAGGTCGTAATGTCCTCACA+AGG - chr3.4:10849665-10849684 None:intergenic 45.0%
TATGTGTGCCTGTAGCATGT+AGG + chr3.4:10852154-10852173 MS.gene039653:intron 45.0%
TATTTCGGTTGCAGAAGTCC+TGG + chr3.4:10852078-10852097 MS.gene039653:CDS 45.0%
TCTTGAATGGGATCCTCAAG+AGG + chr3.4:10849604-10849623 MS.gene039653:CDS 45.0%
TGAATGGCATTGTCAAAGCC+TGG + chr3.4:10848856-10848875 MS.gene039653:CDS 45.0%
TGAGCATCACTAGAACCAGA+TGG - chr3.4:10849584-10849603 None:intergenic 45.0%
TGGGGAAAGGTAGGTTTAGT+TGG + chr3.4:10849147-10849166 MS.gene039653:CDS 45.0%
TGGTCGCACTACTGATAAAC+CGG + chr3.4:10852004-10852023 MS.gene039653:CDS 45.0%
TTTAACCTGTAAAGCCCACG+TGG + chr3.4:10850465-10850484 MS.gene039653:intron 45.0%
TTTCGAGATACAAGTCCTGG+CGG + chr3.4:10852940-10852959 MS.gene039653:CDS 45.0%
! AAGGGTGTGCAAAATGGACA+TGG + chr3.4:10849341-10849360 MS.gene039653:CDS 45.0%
! AATGGTTTGCCGAAAGGGAA+TGG + chr3.4:10849479-10849498 MS.gene039653:CDS 45.0%
! CCATCTGAATTCGATGATGG+AGG + chr3.4:10853003-10853022 MS.gene039653:CDS 45.0%
! GGAGCTTTTATTCTCAACCG+CGG - chr3.4:10849893-10849912 None:intergenic 45.0%
! GGGAAAATGGTTTGCCGAAA+GGG + chr3.4:10849474-10849493 MS.gene039653:CDS 45.0%
! TCTGCATTTGATGAGTTGGG+AGG + chr3.4:10849839-10849858 MS.gene039653:CDS 45.0%
! TGGACTAGATTTCCACCAGA+AGG + chr3.4:10850737-10850756 MS.gene039653:CDS 45.0%
! TGGGAAAATGGTTTGCCGAA+AGG + chr3.4:10849473-10849492 MS.gene039653:CDS 45.0%
! TTTTCGAAGCCTCTTGTGCA+TGG + chr3.4:10851181-10851200 MS.gene039653:intron 45.0%
!! AGTAATCACAGCTCTGAAGG+AGG + chr3.4:10849809-10849828 MS.gene039653:CDS 45.0%
!! ATGGTAATGGGAAGCCTAGA+CGG + chr3.4:10849765-10849784 MS.gene039653:CDS 45.0%
!! CCTAGTGGTGCTACATATGA+AGG + chr3.4:10849170-10849189 MS.gene039653:CDS 45.0%
!! CCTGGTTCGAAGAATTTTGC+AGG + chr3.4:10852096-10852115 MS.gene039653:CDS 45.0%
!! GTGCCACTTTGGCTTTACTT+TGG + chr3.4:10852639-10852658 MS.gene039653:intron 45.0%
ACGCTGGTCACGAAGTTCTT+CGG + chr3.4:10851776-10851795 MS.gene039653:CDS 50.0%
ACTTGGAGCAGGTCTTCCAA+CGG - chr3.4:10850669-10850688 None:intergenic 50.0%
ATTCTCCACGTGGGCTTTAC+AGG - chr3.4:10850473-10850492 None:intergenic 50.0%
CCAACGGAATGTCTGTCCAA+TGG - chr3.4:10850653-10850672 None:intergenic 50.0%
CCAGCGTATTCTCAAAAGCC+CGG - chr3.4:10851763-10851782 None:intergenic 50.0%
CCATTGGACAGACATTCCGT+TGG + chr3.4:10850650-10850669 MS.gene039653:intron 50.0%
CTGCATCCACTCCTGAAAGT+CGG - chr3.4:10853032-10853051 None:intergenic 50.0%
GGTACGTTTAGGTGGTCTGA+TGG + chr3.4:10849500-10849519 MS.gene039653:CDS 50.0%
GTATGCTTGGATCCTTCTGG+TGG - chr3.4:10850752-10850771 None:intergenic 50.0%
GTCGTCATCGTCTTCACAAG+AGG + chr3.4:10848986-10849005 MS.gene039653:CDS 50.0%
GTTGCAAACACGGGGATGAA+AGG + chr3.4:10851013-10851032 MS.gene039653:intron 50.0%
TCAAGTGATGCACTTGGAGC+AGG - chr3.4:10850680-10850699 None:intergenic 50.0%
TCGCACTACTGATAAACCGG+AGG + chr3.4:10852007-10852026 MS.gene039653:CDS 50.0%
TGCATCCACTCCTGAAAGTC+GGG - chr3.4:10853031-10853050 None:intergenic 50.0%
TGTGGTGTCCTACATGCTAC+AGG - chr3.4:10852165-10852184 None:intergenic 50.0%
! GGTAGGTTTAGTTGGCCTAG+TGG + chr3.4:10849155-10849174 MS.gene039653:CDS 50.0%
CAAGGTGTAACATTGCCGCC+AGG - chr3.4:10852958-10852977 None:intergenic 55.0%
CATCCACTCCTGAAAGTCGG+GGG - chr3.4:10853029-10853048 None:intergenic 55.0%
CCATCAGCTGAACTCCGTCT+AGG - chr3.4:10849782-10849801 None:intergenic 55.0%
CCTAGACGGAGTTCAGCTGA+TGG + chr3.4:10849779-10849798 MS.gene039653:CDS 55.0%
GACGGAGTTCAGCTGATGGA+AGG + chr3.4:10849783-10849802 MS.gene039653:CDS 55.0%
GCATCCACTCCTGAAAGTCG+GGG - chr3.4:10853030-10853049 None:intergenic 55.0%
GGCGGCAATGTTACACCTTG+CGG + chr3.4:10852958-10852977 MS.gene039653:CDS 55.0%
GGCGTATGCTTGGATCCTTC+TGG - chr3.4:10850755-10850774 None:intergenic 55.0%
TACACCTTGCGGTCGCAGTT+CGG + chr3.4:10852969-10852988 MS.gene039653:CDS 55.0%
!! CCGGGCTTTTGAGAATACGC+TGG + chr3.4:10851760-10851779 MS.gene039653:CDS 55.0%
!! GTTGGCTCTACTTCTGCCTC+CGG - chr3.4:10852026-10852045 None:intergenic 55.0%
ACACCTTGCGGTCGCAGTTC+GGG + chr3.4:10852970-10852989 MS.gene039653:CDS 60.0%
AGGGTGAGGTGGCGTATGCT+TGG - chr3.4:10850765-10850784 None:intergenic 60.0%
CTTCGGGAGCTCTCATCTCC+TGG + chr3.4:10851392-10851411 MS.gene039653:CDS 60.0%
AGGCCCCCGACTTTCAGGAG+TGG + chr3.4:10853023-10853042 MS.gene039653:CDS 65.0%
GATGGAGGCCCCCGACTTTC+AGG + chr3.4:10853018-10853037 MS.gene039653:CDS 65.0%
GCTCCCGAACTGCGACCGCA+AGG - chr3.4:10852976-10852995 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr3.4 gene 10848843 10853076 10848843 ID=MS.gene039653
chr3.4 mRNA 10848843 10853076 10848843 ID=MS.gene039653.t1;Parent=MS.gene039653
chr3.4 exon 10848843 10849987 10848843 ID=MS.gene039653.t1.exon1;Parent=MS.gene039653.t1
chr3.4 CDS 10848843 10849987 10848843 ID=cds.MS.gene039653.t1;Parent=MS.gene039653.t1
chr3.4 exon 10850661 10850828 10850661 ID=MS.gene039653.t1.exon2;Parent=MS.gene039653.t1
chr3.4 CDS 10850661 10850828 10850661 ID=cds.MS.gene039653.t1;Parent=MS.gene039653.t1
chr3.4 exon 10851325 10851490 10851325 ID=MS.gene039653.t1.exon3;Parent=MS.gene039653.t1
chr3.4 CDS 10851325 10851490 10851325 ID=cds.MS.gene039653.t1;Parent=MS.gene039653.t1
chr3.4 exon 10851722 10851838 10851722 ID=MS.gene039653.t1.exon4;Parent=MS.gene039653.t1
chr3.4 CDS 10851722 10851838 10851722 ID=cds.MS.gene039653.t1;Parent=MS.gene039653.t1
chr3.4 exon 10851924 10852117 10851924 ID=MS.gene039653.t1.exon5;Parent=MS.gene039653.t1
chr3.4 CDS 10851924 10852117 10851924 ID=cds.MS.gene039653.t1;Parent=MS.gene039653.t1
chr3.4 exon 10852867 10853076 10852867 ID=MS.gene039653.t1.exon6;Parent=MS.gene039653.t1
chr3.4 CDS 10852867 10853076 10852867 ID=cds.MS.gene039653.t1;Parent=MS.gene039653.t1
Gene Sequence

>MS.gene039653

ATGAGCAGGGAGCTGAATGGCATTGTCAAAGCCTGGGAATCAACAGTTAGGAAATCAGCAACTGCAAAGAAAAGGGCAAACAGCATTTTCAAACCAATGTCTGTAGCCAATGTAGATGATGAAGATGACGACGACAAACAATCGTCGTCATCGTCTTCACAAGAGGTAAGTCATGTTGAAAAGACTATGCCAAATGGTGATTTTTACACAGGACAATGGCTTGATAAGTTTCCACATGGTCAAGGTAAGTATCTTTGGATTGATGGTTGTATGTATGTAGGTGAATGGATTCAAGGTTTTACAATGGGGAAAGGTAGGTTTAGTTGGCCTAGTGGTGCTACATATGAAGGTGAATTCAAGACTTGTTATATGCATGGTAAAGGGACTTATATAGGTTCATCTGGTGATACTTATAAAGGGAATTGGGTTATGAATTTGAAAAATGGGGATGGTAATGAGAGTTATCCTAATGGTGATTTTTATGATGGTGAATGGAAAAAGGGTGTGCAAAATGGACATGGTAGGTATCAATGGAAAAATGGGAACCATTATATTGGTCAATGGAGGAATGGTTTGTTTAATGGGAATGGTACAATGATGTGGCAAAATGGGAATAGGTATGATGGTTGTTGGGAAAATGGTTTGCCGAAAGGGAATGGTACGTTTAGGTGGTCTGATGGTAGTTTTTATGTCGGTGTTTGGAGTAAAGATCCTAAAGAACAAAGTGGTACTTATTATCCATCTGGTTCTAGTGATGCTCATCTTGAATGGGATCCTCAAGAGGTTTTCACTGTTGAGTTGATTGAATGTATGATTTGTCCTTGTGAGGACATTACGACCTATCCTTCGGACAAGATATTGAATTGGCCGGGTTTAGAGGAAGATAAAGGAACAGAAAAACCGATTCATAAGAAAGGAACTCATGGTAATGGGAAGCCTAGACGGAGTTCAGCTGATGGAAGGCTTAGTAATCACAGCTCTGAAGGAGGTAGAAAATCTGCATTTGATGAGTTGGGAGGCAATTCTGTTCAAAGCTGGAATAAATCGCCGCGGTTGAGAATAAAAGCTCCTAAAAGACCAGGAGAGACTATATCTAAAGGACATAAAAACTATGAGCTTATGTTGAATCTGCAACTAGGTATCAGGTATTCTGATCAGAAAAATTGTTGTTGTTTTCATGTATTTTGTTTACTCTCATATCATCTGTATGGTGTCGCTGAGCTTAATTATTGTGTGTTTGGTTCTGCAATAATAGAAATTGATTTTTAATGAACTGATTTTGTAATAGAGATTCTTGCTATTGCACCAATAAGAAAGAGATTCTCGCTAAAAGTGAGTTGAATGTTAAGTGATTTATGTCTGAATACATTTATATAAAAGGGGGTTGCACGATAAATTAGAGGCTAAAAATCAATTGTAGAGGCAAAAACTTCAAATTCTAGCTTAAATTAGAATCAATTCTGGAGGCCAAATCAATTTTATTCGATAATATCAAAACATATCAAAATCAATTCCACAACTTTTGGAATCAATTTTTCCTCCTCCAAAAGTGAAACCAAACATAGTCTTTTTTTTTTCCCTTCTCTTATTGTTTCTGAGTGATACTTGTATTGTACTAGTATTTTAACCTGTAAAGCCCACGTGGAGAATATATATTGAAATTTCCTAATGAAAACTCGGTAACTGTTGTAATTTGATAACATTAACATTGATAGCTATAAATGGTGCAATGATGAATTTCACATTGTAGCAAATAAATTTCCTTCCTTGATTCTAATTTTCACGGCACATTTACTAATTTCTTGTACCATTGGACAGACATTCCGTTGGAAGACCTGCTCCAAGTGCATCACTTGATTTGAAGTCTTCTGCATTTGATCCCAAAGAGAAAGTTTGGACTAGATTTCCACCAGAAGGATCCAAGCATACGCCACCTCACCCTTCATGTGAATTTAGATGGAAAGACTACTGTCCGGTAGTATTCAGGTATGCATAGGATTGAATGATCAGTTTTCTATTTATGTAAGCAAAGTTTTGGTCCTAACTAGGTGAACGAATCATGTTCTGTAACATAATCTACTAAGTGTTTACTTGTTGAGAGTAACGCTTGAAGTTTATGTTCAAAAAGTATTTTTCAGTTTTCGTGTTCTAAAATTTGTGTTCATTTTAAGTTGCAAACACGGGGATGAAAGGCTGAAGTAGTGAACAATTGTGATAGAGAGAAGATAGAGGCTAAAATAGGCAGAATGCATTTTCAGAAACAACGAAAACAATGTTTTAGTATTTTCGAAATTTCTAAAAAATCTAGATCTGTTTTCAGAAATTGTAAAAGAAACATTTTTCGAAGCCTCTTGTGCATGGTTGATATTGCAATTGTTTCATAACTTAGTATTACAAATAGTCTCTTACTGTGTTGGACTTTCATTTGTTTGTCTAAATTCACAGAATATGAGGGTGTATTTGATTGCATTTATATTTTCAGGGCTCTCAGAAAGCTGTTCAAAGTTGATCCTGCTGATTACATGATATCAATATGTGGGAATGAAGCTCTTCGGGAGCTCTCATCTCCTGGAAAAAGTGGAAGCTTTTTCTATTTGACGAACGATGACCGGTATATGATCAAAACCATGAAGAAAGCAGAAGTAAAAGTGAGTTCCATTTTCATTGGCTAGATATAATATAAGCCTTTTTTATCAATTCTCTCAACCCTTCACTTTATATGCTTACAAAAGAACAAAAATTACGATAGATTTAGAAATATAAAAGTTTGTCATAAATACGTATTAGTCCACTTTGATGTGATAGTTTTCACAAATATGCATTGCATTATAAAGATCATTAAATCATATTTCAATCCAAAAAATATTACATGATTGCAGGTTTTTCTGAAAATGCTTCCTGCTTATTATAAACACGTCCGGGCTTTTGAGAATACGCTGGTCACGAAGTTCTTCGGCCTCCATTGTGTAAAACTAACAGGAAGTGCACAAAAGAAGGTAATGTCTAGGTGTTTATAAACTTTTAATTTGGTATAAAAATAAAACTTTGATTCTTAATCAGTCACATTTCATTAAATTTCAGGTTCGCTTTGTCATAATGGGAAATATATTTTGTTCTCAATATGTCATCCATAGACGGTTTGACTTGAAAGGTTCGACGTTTGGTCGCACTACTGATAAACCGGAGGCAGAAGTAGAGCCAACAACAACACTTAAGGATCTTGACTTAAATTTTATATTTCGGTTGCAGAAGTCCTGGTTCGAAGAATTTTGCAGGTGAATTTCTTGCTTAGTGCTTGTTCTGCCACTATTTATGTGTGCCTGTAGCATGTAGGACACCACACTTTACAAGTTTTGGTTTTATTAAACATATTATTAGCTTCTTCGGACAAAAAGTTTGTTTTGAAGTTATTGATGGAAAGTCGATTGTAACTTGAGAGTAGGTGTATTACTAGTTACCTCTCTTAGTTGAATGACAGAAATGCAGATTTCACTAAAAAAGTTGCATCCTTGTATGAGCTGCAAAATTGCCTGCAATTTTTAGTCATATGATTAATGAACGAAAAATGACTTATGTGTCTTGATATTTAACATAAGAAATAGGGAAAACTGCACCAGAGGTCATTTAACTTACCTTAAAGTTTCAACTTTCAAACCGTGAACAAAATGTTGAACCTTTTTAAACGACAACAACGTTGAACCTTTAATGAATTCCCGTCCAAAACCGTGAACAAAATGACCTTATTTTAGCCTTCTTTTGAAATGTAATTTATTATTGTCTTTACTTTTGAACTTTGGTGCCACTTTGGCTTTACTTTGGAACTTCAGTGCCATTTTTGCTCGCATTCAATGAATGAATGAAAGGTTTCACTATAAAAAGATAAAGAACCTGTTTGAAACTTTATATATAAGTTAGAAGGCCTCCCTAATACAGTTTTTCCTATCAAATATTTGTAATTTAGTTTATCATATTTCTTTTTTTTTTTTTTGACGTCGGAGATATTTCTAAACATGCCTTCATGCAGACAAGTTGATAGGGACTGTGACTTTCTTCAACATGAAAGAATTATGGATTACAGTATGTTGGTTGGTCTTCACTTTCGAGATACAAGTCCTGGCGGCAATGTTACACCTTGCGGTCGCAGTTCGGGAGCTCGCACCCCATCTGAATTCGATGATGGAGGCCCCCGACTTTCAGGAGTGGATGCAGATCATCTCATCATAGATCCTAGTCG
Protein sequence

>MS.gene039653.t1

MSRELNGIVKAWESTVRKSATAKKRANSIFKPMSVANVDDEDDDDKQSSSSSSQEVSHVEKTMPNGDFYTGQWLDKFPHGQGKYLWIDGCMYVGEWIQGFTMGKGRFSWPSGATYEGEFKTCYMHGKGTYIGSSGDTYKGNWVMNLKNGDGNESYPNGDFYDGEWKKGVQNGHGRYQWKNGNHYIGQWRNGLFNGNGTMMWQNGNRYDGCWENGLPKGNGTFRWSDGSFYVGVWSKDPKEQSGTYYPSGSSDAHLEWDPQEVFTVELIECMICPCEDITTYPSDKILNWPGLEEDKGTEKPIHKKGTHGNGKPRRSSADGRLSNHSSEGGRKSAFDELGGNSVQSWNKSPRLRIKAPKRPGETISKGHKNYELMLNLQLGIRHSVGRPAPSASLDLKSSAFDPKEKVWTRFPPEGSKHTPPHPSCEFRWKDYCPVVFRALRKLFKVDPADYMISICGNEALRELSSPGKSGSFFYLTNDDRYMIKTMKKAEVKVFLKMLPAYYKHVRAFENTLVTKFFGLHCVKLTGSAQKKVRFVIMGNIFCSQYVIHRRFDLKGSTFGRTTDKPEAEVEPTTTLKDLDLNFIFRLQKSWFEEFCRQVDRDCDFLQHERIMDYSMLVGLHFRDTSPGGNVTPCGRSSGARTPSEFDDGGPRLSGVDADHLIIDPS