AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene039654

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene039654.t1 MTR_3g014650 95.795 761 14 2 1 755 26 774 0.0 1513
MS.gene039654.t1 MTR_8g039100 74.707 767 166 8 1 755 1 751 0.0 1152
MS.gene039654.t1 MTR_1g050740 62.861 797 224 16 8 755 8 781 0.0 993
MS.gene039654.t1 MTR_7g089950 58.168 808 257 16 7 755 7 792 0.0 923
MS.gene039654.t1 MTR_3g073100 53.056 720 274 16 59 754 52 731 0.0 702
MS.gene039654.t1 MTR_3g097260 52.916 703 276 8 59 754 50 704 0.0 697
MS.gene039654.t1 MTR_1g062740 42.748 786 339 16 60 751 47 815 0.0 599
MS.gene039654.t1 MTR_5g459450 61.337 419 134 6 358 754 320 732 7.59e-173 516
MS.gene039654.t1 MTR_5g459450 58.480 171 71 0 57 227 62 232 4.10e-64 228
MS.gene039654.t1 MTR_5g459450 32.258 124 84 0 134 257 70 193 1.77e-15 81.3
MS.gene039654.t1 MTR_5g459450 44.318 88 49 0 156 243 69 156 6.97e-14 75.9
MS.gene039654.t1 MTR_8g095170 59.148 399 150 5 358 754 279 666 8.80e-161 481
MS.gene039654.t1 MTR_8g095170 55.030 169 75 1 62 229 28 196 6.05e-56 203
MS.gene039654.t1 MTR_8g095170 36.508 126 79 1 110 234 30 155 3.62e-15 80.1
MS.gene039654.t1 MTR_8g095170 65.169 267 90 2 358 624 279 542 2.11e-124 384
MS.gene039654.t1 MTR_8g095170 55.030 169 75 1 62 229 28 196 7.17e-56 202
MS.gene039654.t1 MTR_8g095170 36.508 126 79 1 110 234 30 155 7.48e-15 78.6
MS.gene039654.t1 MTR_8g088930 43.794 427 188 8 366 747 338 757 5.34e-115 365
MS.gene039654.t1 MTR_8g088930 49.746 197 99 0 60 256 9 205 2.13e-61 221
MS.gene039654.t1 MTR_8g088930 33.613 119 79 0 58 176 76 194 1.52e-14 78.2
MS.gene039654.t1 MTR_8g088930 43.692 428 188 8 366 747 338 758 7.44e-115 365
MS.gene039654.t1 MTR_8g088930 49.746 197 99 0 60 256 9 205 2.23e-61 221
MS.gene039654.t1 MTR_8g088930 33.613 119 79 0 58 176 76 194 1.51e-14 78.2
MS.gene039654.t1 MTR_8g088930 54.118 255 113 2 369 623 341 591 5.61e-91 299
MS.gene039654.t1 MTR_8g088930 49.746 197 99 0 60 256 9 205 1.45e-61 219
MS.gene039654.t1 MTR_8g088930 33.613 119 79 0 58 176 76 194 1.40e-14 78.2
MS.gene039654.t1 MTR_8g088930 54.118 255 113 2 369 623 341 591 5.84e-91 299
MS.gene039654.t1 MTR_8g088930 49.746 197 99 0 60 256 9 205 1.44e-61 219
MS.gene039654.t1 MTR_8g088930 33.613 119 79 0 58 176 76 194 1.37e-14 78.2
MS.gene039654.t1 MTR_8g080860 36.765 204 119 1 60 263 16 209 2.47e-35 136
MS.gene039654.t1 MTR_8g080860 36.765 204 119 1 60 263 12 205 3.36e-35 135
MS.gene039654.t1 MTR_4g107460 35.176 199 118 2 66 263 11 199 7.64e-31 124
MS.gene039654.t1 MTR_4g107460 35.294 187 121 0 62 248 54 240 8.56e-31 124
MS.gene039654.t1 MTR_4g107460 32.584 178 120 0 62 239 77 254 7.77e-21 95.1
MS.gene039654.t1 MTR_6g043150 40.230 174 104 0 61 234 7 180 4.56e-30 122
MS.gene039654.t1 MTR_6g043150 38.220 191 117 1 62 251 77 267 3.69e-28 116
MS.gene039654.t1 MTR_6g043150 41.803 122 69 1 53 172 204 325 3.60e-19 89.7
MS.gene039654.t1 MTR_6g043150 33.566 143 71 2 110 251 10 129 9.53e-11 64.3
MS.gene039654.t1 MTR_8g092090 35.417 192 116 1 62 245 30 221 5.30e-29 116
MS.gene039654.t1 MTR_8g092090 33.152 184 105 2 88 263 10 183 1.01e-22 98.6
MS.gene039654.t1 MTR_8g092090 35.570 149 96 0 62 210 84 232 4.77e-21 93.6
MS.gene039654.t1 MTR_2g078470 37.037 189 118 1 64 251 79 267 3.87e-27 114
MS.gene039654.t1 MTR_2g078470 34.872 195 126 1 58 251 142 336 7.18e-26 110
MS.gene039654.t1 MTR_2g078470 38.860 193 117 1 60 251 6 198 7.63e-24 104
MS.gene039654.t1 MTR_2g078470 39.041 146 89 0 62 207 215 360 7.93e-22 98.6
MS.gene039654.t1 MTR_2g078470 30.481 187 130 0 62 248 169 355 5.90e-20 92.8
MS.gene039654.t1 MTR_2g078470 32.530 166 112 0 65 230 195 360 7.86e-17 83.6
MS.gene039654.t1 MTR_2g078470 41.667 96 56 0 51 146 273 368 2.66e-15 79.0
MS.gene039654.t1 MTR_5g010840 30.682 264 137 3 19 244 75 330 1.77e-26 112
MS.gene039654.t1 MTR_5g010840 31.915 188 120 1 58 245 175 354 4.96e-22 99.4
MS.gene039654.t1 MTR_5g010840 39.815 108 65 0 57 164 258 365 4.54e-16 81.3
MS.gene039654.t1 MTR_5g010840 30.435 161 112 0 49 209 204 364 1.30e-14 77.0
MS.gene039654.t1 MTR_8g095240 34.872 195 104 2 69 263 9 180 3.92e-26 112
MS.gene039654.t1 MTR_8g095240 32.701 211 131 3 63 262 118 328 7.64e-25 108
MS.gene039654.t1 MTR_4g099180 30.702 228 148 2 18 241 132 353 3.98e-24 106
MS.gene039654.t1 MTR_4g099180 29.605 152 98 1 94 245 165 307 2.50e-13 73.2
MS.gene039654.t1 MTR_3g005910 59.459 74 28 1 483 556 1 72 4.61e-24 96.7
MS.gene039654.t1 MTR_7g451440 32.804 189 123 1 61 245 189 377 8.62e-24 105
MS.gene039654.t1 MTR_7g451440 35.398 113 73 0 134 246 193 305 4.49e-11 66.2
MS.gene039654.t1 MTR_7g451440 35.000 100 65 0 146 245 182 281 4.65e-11 66.2
MS.gene039654.t1 MTR_8g080340 35.057 174 89 2 47 220 3 152 3.78e-23 97.4
MS.gene039654.t1 MTR_8g080340 33.099 142 94 1 134 274 20 161 9.24e-18 82.0
MS.gene039654.t1 MTR_8g080340 35.507 138 89 0 111 248 20 157 2.07e-16 78.2
MS.gene039654.t1 MTR_5g058920 34.706 170 111 0 65 234 198 367 1.53e-22 101
MS.gene039654.t1 MTR_5g058920 42.697 89 51 0 146 234 187 275 2.13e-13 73.6
MS.gene039654.t1 MTR_5g058920 32.609 138 93 0 109 246 196 333 1.15e-12 71.2
MS.gene039654.t1 MTR_8g007500 31.220 205 137 1 45 245 178 382 3.46e-22 100
MS.gene039654.t1 MTR_3g072650 32.164 171 116 0 64 234 185 355 3.94e-22 100
MS.gene039654.t1 MTR_3g072650 31.159 138 95 0 109 246 184 321 6.53e-14 75.1
MS.gene039654.t1 MTR_3g072650 34.921 126 82 0 66 191 233 358 7.33e-14 74.7
MS.gene039654.t1 MTR_3g072650 32.353 170 115 0 65 234 186 355 5.03e-22 99.8
MS.gene039654.t1 MTR_3g072650 31.159 138 95 0 109 246 184 321 4.96e-14 75.1
MS.gene039654.t1 MTR_3g072650 33.588 131 87 0 61 191 228 358 8.88e-14 74.3
MS.gene039654.t1 MTR_8g080350 30.172 232 123 3 63 255 125 356 6.27e-22 99.4
MS.gene039654.t1 MTR_8g080350 34.395 157 101 1 68 224 86 240 6.54e-17 84.0
MS.gene039654.t1 MTR_8g080350 32.886 149 85 2 58 191 189 337 4.17e-15 78.6
MS.gene039654.t1 MTR_8g080310 35.915 142 91 0 103 244 3 144 6.16e-21 90.5
MS.gene039654.t1 MTR_8g080310 36.242 149 95 0 86 234 9 157 3.06e-20 88.6
MS.gene039654.t1 MTR_8g080310 32.867 143 96 0 69 211 15 157 1.71e-17 80.9
MS.gene039654.t1 MTR_1g097110 33.333 198 110 8 437 620 1314 1503 3.75e-15 80.5
MS.gene039654.t1 MTR_8g092410 34.884 129 81 2 103 228 149 277 2.21e-13 73.2
MS.gene039654.t1 MTR_8g092410 32.414 145 91 4 113 253 138 279 6.06e-12 68.6
MS.gene039654.t1 MTR_8g023080 30.693 202 110 7 437 620 1524 1713 4.15e-13 73.9
MS.gene039654.t1 MTR_8g023080 30.693 202 110 7 437 620 1532 1721 4.34e-13 73.9
MS.gene039654.t1 MTR_4g124590 29.703 202 112 7 437 620 1524 1713 1.50e-12 72.0
MS.gene039654.t1 MTR_3g023310 33.846 130 73 1 74 203 6 122 1.75e-12 67.0
MS.gene039654.t1 MTR_3g023310 33.884 121 67 1 123 243 9 116 2.72e-12 66.2
MS.gene039654.t1 MTR_4g099180 31.724 145 93 1 35 179 149 287 1.79e-12 69.3
MS.gene039654.t1 MTR_4g099180 29.710 138 88 1 94 231 165 293 4.88e-12 68.2
MS.gene039654.t1 MTR_4g099180 36.667 90 57 0 145 234 161 250 3.05e-11 65.9
MS.gene039654.t1 MTR_4g099180 31.724 145 93 1 35 179 149 287 3.53e-12 68.9
MS.gene039654.t1 MTR_4g099180 29.286 140 90 1 94 233 165 295 7.91e-12 67.8
MS.gene039654.t1 MTR_4g099180 35.870 92 59 0 143 234 159 250 5.69e-11 65.1
MS.gene039654.t1 MTR_1g112280 30.709 127 88 0 89 215 615 741 2.54e-11 67.8
MS.gene039654.t1 MTR_4g085090 29.798 198 117 8 437 620 1466 1655 5.13e-11 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene039654.t1 AT3G07960 68.716 732 203 8 33 755 1 715 0.0 1040
MS.gene039654.t1 AT3G56960 62.125 800 235 16 1 754 1 778 0.0 992
MS.gene039654.t1 AT3G56960 62.125 800 235 16 1 754 1 778 0.0 992
MS.gene039654.t1 AT2G41210 62.013 795 239 15 1 755 1 772 0.0 978
MS.gene039654.t1 AT3G07960 68.031 635 186 6 33 666 1 619 0.0 899
MS.gene039654.t1 AT3G07960 69.494 613 172 5 33 644 1 599 0.0 891
MS.gene039654.t1 AT3G07960 69.494 613 172 5 33 644 1 599 0.0 891
MS.gene039654.t1 AT2G26420 50.210 715 311 14 50 754 39 718 0.0 687
MS.gene039654.t1 AT2G26420 50.210 715 311 14 50 754 39 718 0.0 687
MS.gene039654.t1 AT2G26420 50.281 712 301 14 50 754 39 704 0.0 686
MS.gene039654.t1 AT1G10900 40.236 763 372 14 60 754 7 753 0.0 545
MS.gene039654.t1 AT1G10900 34.074 135 89 0 102 236 3 137 1.84e-16 84.3
MS.gene039654.t1 AT1G10900 38.000 100 60 1 144 243 1 98 1.34e-14 78.2
MS.gene039654.t1 AT1G10900 40.236 763 372 14 60 754 7 753 0.0 545
MS.gene039654.t1 AT1G10900 34.074 135 89 0 102 236 3 137 1.84e-16 84.3
MS.gene039654.t1 AT1G10900 38.000 100 60 1 144 243 1 98 1.34e-14 78.2
MS.gene039654.t1 AT1G10900 40.236 763 372 14 60 754 7 753 0.0 545
MS.gene039654.t1 AT1G10900 34.074 135 89 0 102 236 3 137 1.84e-16 84.3
MS.gene039654.t1 AT1G10900 38.000 100 60 1 144 243 1 98 1.34e-14 78.2
MS.gene039654.t1 AT1G77740 60.233 430 152 7 341 754 327 753 5.41e-173 515
MS.gene039654.t1 AT1G77740 58.427 178 74 0 59 236 72 249 2.03e-69 243
MS.gene039654.t1 AT1G77740 31.452 124 85 0 134 257 78 201 1.28e-15 81.6
MS.gene039654.t1 AT1G77740 34.653 101 66 0 42 142 147 247 7.44e-15 79.0
MS.gene039654.t1 AT1G77740 40.426 94 56 0 150 243 71 164 1.21e-13 75.1
MS.gene039654.t1 AT1G77740 60.233 430 152 7 341 754 327 753 5.41e-173 515
MS.gene039654.t1 AT1G77740 58.427 178 74 0 59 236 72 249 2.03e-69 243
MS.gene039654.t1 AT1G77740 31.452 124 85 0 134 257 78 201 1.28e-15 81.6
MS.gene039654.t1 AT1G77740 34.653 101 66 0 42 142 147 247 7.44e-15 79.0
MS.gene039654.t1 AT1G77740 40.426 94 56 0 150 243 71 164 1.21e-13 75.1
MS.gene039654.t1 AT1G21980 61.743 413 139 8 358 754 342 751 3.86e-172 513
MS.gene039654.t1 AT1G21980 60.112 178 71 0 59 236 71 248 3.16e-71 248
MS.gene039654.t1 AT1G21980 33.607 122 72 1 42 163 146 258 3.16e-13 73.9
MS.gene039654.t1 AT1G21980 39.362 94 57 0 150 243 70 163 1.22e-12 72.0
MS.gene039654.t1 AT3G09920 46.756 447 185 8 348 751 373 809 1.62e-127 399
MS.gene039654.t1 AT3G09920 40.000 235 140 1 16 250 6 239 3.35e-55 204
MS.gene039654.t1 AT3G09920 46.756 447 185 8 348 751 373 809 1.62e-127 399
MS.gene039654.t1 AT3G09920 40.000 235 140 1 16 250 6 239 3.35e-55 204
MS.gene039654.t1 AT3G09920 46.756 447 185 8 348 751 373 809 1.62e-127 399
MS.gene039654.t1 AT3G09920 40.000 235 140 1 16 250 6 239 3.35e-55 204
MS.gene039654.t1 AT3G09920 46.756 447 185 8 348 751 373 809 1.62e-127 399
MS.gene039654.t1 AT3G09920 40.000 235 140 1 16 250 6 239 3.35e-55 204
MS.gene039654.t1 AT1G60890 45.727 433 182 7 367 753 342 767 1.58e-118 375
MS.gene039654.t1 AT1G60890 45.320 203 111 0 54 256 1 203 2.47e-57 209
MS.gene039654.t1 AT1G60890 45.727 433 182 7 367 753 354 779 1.66e-118 375
MS.gene039654.t1 AT1G60890 45.960 198 107 0 59 256 18 215 4.88e-57 208
MS.gene039654.t1 AT1G01460 34.615 416 198 9 405 754 15 422 4.42e-71 239
MS.gene039654.t1 AT4G01190 34.545 385 205 8 410 752 12 391 4.82e-68 230
MS.gene039654.t1 AT4G01190 34.545 385 205 8 410 752 22 401 6.13e-68 230
MS.gene039654.t1 AT4G01190 34.545 385 205 8 410 752 22 401 6.13e-68 230
MS.gene039654.t1 AT1G77660 34.884 172 112 0 63 234 177 348 3.43e-25 109
MS.gene039654.t1 AT1G77660 34.921 126 82 0 66 191 226 351 1.95e-15 79.7
MS.gene039654.t1 AT1G21920 32.292 192 130 0 43 234 153 344 1.95e-23 103
MS.gene039654.t1 AT1G21920 33.824 136 90 0 58 193 214 349 3.11e-15 78.6
MS.gene039654.t1 AT1G21920 32.292 192 130 0 43 234 153 344 2.76e-23 103
MS.gene039654.t1 AT1G21920 33.824 136 90 0 58 193 214 349 2.87e-15 79.3
MS.gene039654.t1 AT2G35170 33.511 188 120 2 59 242 222 408 1.00e-22 102
MS.gene039654.t1 AT2G35170 30.968 155 107 0 91 245 230 384 1.35e-15 80.9
MS.gene039654.t1 AT4G17080 32.418 182 119 1 65 242 258 439 1.37e-22 102
MS.gene039654.t1 AT4G17080 35.821 134 86 0 61 194 300 433 2.07e-18 89.7
MS.gene039654.t1 AT4G17080 30.921 152 96 1 94 245 250 392 1.96e-16 83.6
MS.gene039654.t1 AT4G17080 35.088 114 74 0 133 246 257 370 3.76e-12 70.1
MS.gene039654.t1 AT3G14270 31.579 171 89 6 468 620 1536 1696 1.67e-12 72.0
MS.gene039654.t1 AT3G14270 31.579 171 89 6 468 620 1536 1696 1.67e-12 72.0
MS.gene039654.t1 AT4G33240 29.703 202 112 7 437 620 1464 1653 1.02e-11 69.3
MS.gene039654.t1 AT4G33240 29.703 202 112 7 437 620 1467 1656 1.03e-11 69.3
MS.gene039654.t1 AT4G33240 29.703 202 112 7 437 620 1468 1657 1.03e-11 69.3
MS.gene039654.t1 AT4G33240 29.703 202 112 7 437 620 1468 1657 1.03e-11 69.3
MS.gene039654.t1 AT4G33240 29.703 202 112 7 437 620 1468 1657 1.03e-11 69.3
MS.gene039654.t1 AT4G33240 29.703 202 112 7 437 620 1465 1654 1.07e-11 69.3
MS.gene039654.t1 AT4G33240 29.703 202 112 7 437 620 1428 1617 1.09e-11 69.3

Find 181 sgRNAs with CRISPR-Local

Find 323 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGAGGAATGGTTTGTTTAA+TGG 0.207035 3.4:+10920101 MS.gene039654:CDS
TCTTCAACATGAAAGAATTA+TGG 0.236569 3.4:+10923589 MS.gene039654:CDS
TTATGATGGTGAATGGAAAA+AGG 0.247456 3.4:+10920019 MS.gene039654:CDS
TCTAGTCCAAACTTTCTCTT+TGG 0.262398 3.4:-10921420 None:intergenic
TCAGGTTCGCTTTGTCATAA+TGG 0.264214 3.4:+10922617 MS.gene039654:intron
TTGATCCCAAAGAGAAAGTT+TGG 0.270301 3.4:+10921414 MS.gene039654:CDS
TAAGTACCACTTTGTTCTTT+AGG 0.272506 3.4:-10920251 None:intergenic
GGAGGAATGGTTTGTTTAAT+GGG 0.278404 3.4:+10920102 MS.gene039654:CDS
ATGGTCAAGGTAAGTATCTT+TGG 0.278950 3.4:+10919775 MS.gene039654:CDS
ACCCTTCATGTGAATTTAGA+TGG 0.284141 3.4:+10921477 MS.gene039654:CDS
CTTTCAAGTCAAACCGTCTA+TGG 0.287069 3.4:-10922668 None:intergenic
GTGATACTTATAAAGGGAAT+TGG 0.288743 3.4:+10919943 MS.gene039654:CDS
TATGATGGTTGTTGGGAAAA+TGG 0.296406 3.4:+10920158 MS.gene039654:CDS
GGTACAATGATGTGGCAAAA+TGG 0.307349 3.4:+10920128 MS.gene039654:CDS
CAGGTTCGCTTTGTCATAAT+GGG 0.309061 3.4:+10922618 MS.gene039654:intron
GGTAAGTATCTTTGGATTGA+TGG 0.314470 3.4:+10919783 MS.gene039654:CDS
GACTTGAAAGGTTCGACGTT+TGG 0.319529 3.4:+10922681 MS.gene039654:CDS
TCCTCCATTGACCAATATAA+TGG 0.339875 3.4:-10920085 None:intergenic
TACACCTTGCGGTCGCAGTT+CGG 0.346435 3.4:+10923667 MS.gene039654:CDS
ACTACTGTCCGGTAGTATTC+AGG 0.348899 3.4:+10921504 MS.gene039654:CDS
TCATCTGGTGATACTTATAA+AGG 0.349922 3.4:+10919936 MS.gene039654:CDS
ACACCTTGCGGTCGCAGTTC+GGG 0.350850 3.4:+10923668 MS.gene039654:CDS
CTAGTCCAAACTTTCTCTTT+GGG 0.371473 3.4:-10921419 None:intergenic
ATTGAATTGGCCGGGTTTAG+AGG 0.376512 3.4:+10920397 MS.gene039654:CDS
CATGCCAGCGCGAGCCGAAA+TGG 0.381500 3.4:+10923984 MS.gene039654:CDS
CTCCATTGTGTAAAACTAAC+AGG 0.382205 3.4:+10922497 MS.gene039654:CDS
ATGTGGGAATGAAGCTCTTC+GGG 0.385683 3.4:+10922073 MS.gene039654:CDS
TGCATCCACTCCTGAAAGTC+GGG 0.386083 3.4:-10923726 None:intergenic
CTTCATGCAGACAAGTTGAT+AGG 0.393068 3.4:+10923555 MS.gene039654:intron
GGCGTATGCTTGGATCCTTC+TGG 0.393211 3.4:-10921449 None:intergenic
GGAATAGGTATGATGGTTGT+TGG 0.396978 3.4:+10920150 MS.gene039654:CDS
CATGGTAAAGGGACTTATAT+AGG 0.402597 3.4:+10919912 MS.gene039654:CDS
TGAATCTGCAACTAGGTATC+AGG 0.404283 3.4:+10920663 MS.gene039654:CDS
CCGGGTTTAGAGGAAGATAA+AGG 0.411765 3.4:+10920407 MS.gene039654:CDS
AGATCCTTAAGTGTTGTTGT+TGG 0.414524 3.4:-10922738 None:intergenic
CGAAAGGGAATGGTACGTTT+AGG 0.421918 3.4:+10920186 MS.gene039654:CDS
AAAATCTGCATTTGATGAGT+TGG 0.424427 3.4:+10920532 MS.gene039654:CDS
AGAAAGGAACTCATGGTAAT+GGG 0.427258 3.4:+10920450 MS.gene039654:CDS
GGGAAAATGGTTTGCCGAAA+GGG 0.430287 3.4:+10920171 MS.gene039654:CDS
CTTCGGGAGCTCTCATCTCC+TGG 0.430290 3.4:+10922089 MS.gene039654:CDS
TGATGTGGCAAAATGGGAAT+AGG 0.431149 3.4:+10920135 MS.gene039654:CDS
ACGCTGGTCACGAAGTTCTT+CGG 0.431752 3.4:+10922473 MS.gene039654:CDS
CGCGAGCCGAAATGGCTTTG+CGG 0.434207 3.4:+10923992 MS.gene039654:CDS
AATGGTTTGTTTAATGGGAA+TGG 0.437841 3.4:+10920107 MS.gene039654:CDS
CTTCGGACAAGATATTGAAT+TGG 0.439713 3.4:+10920384 MS.gene039654:CDS
TGGGGAAAGGTAGGTTTAGT+TGG 0.440017 3.4:+10919844 MS.gene039654:CDS
AAGAAAGGAACTCATGGTAA+TGG 0.441568 3.4:+10920449 MS.gene039654:CDS
CACTTTCGAGATACAAGTCC+TGG 0.443801 3.4:+10923635 MS.gene039654:CDS
AAATCTGCATTTGATGAGTT+GGG 0.447343 3.4:+10920533 MS.gene039654:CDS
GGGACTTATATAGGTTCATC+TGG 0.447511 3.4:+10919921 MS.gene039654:CDS
CTGCTTATTATAAACACGTC+CGG 0.448129 3.4:+10922438 MS.gene039654:CDS
AATCAGCAACTGCAAAGAAA+AGG 0.448593 3.4:+10919592 MS.gene039654:CDS
TTCCATCTAAATTCACATGA+AGG 0.448605 3.4:-10921479 None:intergenic
TGATACTTATAAAGGGAATT+GGG 0.449590 3.4:+10919944 MS.gene039654:CDS
ATGGACATGGTAGGTATCAA+TGG 0.450321 3.4:+10920051 MS.gene039654:CDS
TGAATGGCATTGTCAAAGCC+TGG 0.453631 3.4:+10919553 MS.gene039654:CDS
CTAGTGATGCTCATCTTGAA+TGG 0.455044 3.4:+10920288 MS.gene039654:CDS
TGAGTTCCTTTCTTATGAAT+CGG 0.455684 3.4:-10920440 None:intergenic
AGTGGTACTTATTATCCATC+TGG 0.456958 3.4:+10920263 MS.gene039654:CDS
AGAGCCAACAACAACACTTA+AGG 0.458492 3.4:+10922734 MS.gene039654:CDS
TTTCCTAACTGTTGATTCCC+AGG 0.463471 3.4:-10919571 None:intergenic
GTTGGCTCTACTTCTGCCTC+CGG 0.470271 3.4:-10922720 None:intergenic
TATGTGGGAATGAAGCTCTT+CGG 0.470678 3.4:+10922072 MS.gene039654:CDS
AATTATGGATTACAGTATGT+TGG 0.471440 3.4:+10923604 MS.gene039654:CDS
CTTGTTATATGCATGGTAAA+GGG 0.472980 3.4:+10919901 MS.gene039654:CDS
GAATAGGTATGATGGTTGTT+GGG 0.474191 3.4:+10920151 MS.gene039654:CDS
TATGTAGGTGAATGGATTCA+AGG 0.474984 3.4:+10919813 MS.gene039654:CDS
TCTATTTGACGAACGATGAC+CGG 0.479278 3.4:+10922129 MS.gene039654:CDS
CTAAACGTACCATTCCCTTT+CGG 0.479325 3.4:-10920185 None:intergenic
AAAGCCATTTCGGCTCGCGC+TGG 0.481604 3.4:-10923988 None:intergenic
TGGTCGCACTACTGATAAAC+CGG 0.482177 3.4:+10922701 MS.gene039654:CDS
TCAACGGCTGAGATTGAAGT+TGG 0.485913 3.4:-10924162 None:intergenic
CATAGACGGTTTGACTTGAA+AGG 0.488527 3.4:+10922669 MS.gene039654:CDS
CATCTGGTGATACTTATAAA+GGG 0.494249 3.4:+10919937 MS.gene039654:CDS
GTACAATGATGTGGCAAAAT+GGG 0.495315 3.4:+10920129 MS.gene039654:CDS
GGACAAGATATTGAATTGGC+CGG 0.497558 3.4:+10920388 MS.gene039654:CDS
TAGTGATGCTCATCTTGAAT+GGG 0.499937 3.4:+10920289 MS.gene039654:CDS
CAATATCTTGTCCGAAGGAT+AGG 0.500345 3.4:-10920378 None:intergenic
ACTTGTTATATGCATGGTAA+AGG 0.500619 3.4:+10919900 MS.gene039654:CDS
TCAAGTGATGCACTTGGAGC+AGG 0.501043 3.4:-10921374 None:intergenic
AACAGGAAGTGCACAAAAGA+AGG 0.502174 3.4:+10922514 MS.gene039654:CDS
AAGCCTGGGAATCAACAGTT+AGG 0.503594 3.4:+10919568 MS.gene039654:CDS
AAGCGTTTCGAGTATAGCCT+TGG 0.504382 3.4:-10924186 None:intergenic
CCTTTATCTTCCTCTAAACC+CGG 0.504792 3.4:-10920407 None:intergenic
AGACTTTCAAGAGAATGAGC+AGG 0.504965 3.4:+10919526 None:intergenic
TATTTCGGTTGCAGAAGTCC+TGG 0.509138 3.4:+10922775 MS.gene039654:CDS
ATCAGCAACTGCAAAGAAAA+GGG 0.510464 3.4:+10919593 MS.gene039654:CDS
GAGGCAATTCTGTTCAAAGC+TGG 0.510720 3.4:+10920555 MS.gene039654:CDS
GTTGTATGTATGTAGGTGAA+TGG 0.511069 3.4:+10919805 MS.gene039654:CDS
CGAGTATAGCCTTGGATCAA+CGG 0.514077 3.4:-10924178 None:intergenic
CCTGCAAAATTCTTCGAACC+AGG 0.516023 3.4:-10922793 None:intergenic
TTCAAGACTTGTTATATGCA+TGG 0.518520 3.4:+10919894 MS.gene039654:CDS
CAGTTGGTTGGCGAACCAAC+CGG 0.520429 3.4:+10924036 MS.gene039654:CDS
ATTGATATCATGTAATCAGC+AGG 0.520915 3.4:-10922050 None:intergenic
CCTCCATCATCGAATTCAGA+TGG 0.521013 3.4:-10923701 None:intergenic
TATATTGGTCAATGGAGGAA+TGG 0.521050 3.4:+10920089 MS.gene039654:CDS
ATTGATGGTTGTATGTATGT+AGG 0.525013 3.4:+10919798 MS.gene039654:CDS
TGCTTATTATAAACACGTCC+GGG 0.526968 3.4:+10922439 MS.gene039654:CDS
GGTAATGAGAGTTATCCTAA+TGG 0.527045 3.4:+10919990 MS.gene039654:CDS
GACAAGATATTGAATTGGCC+GGG 0.530886 3.4:+10920389 MS.gene039654:CDS
GGAACCATTATATTGGTCAA+TGG 0.532331 3.4:+10920081 MS.gene039654:CDS
CTCAATATGTCATCCATAGA+CGG 0.533506 3.4:+10922655 MS.gene039654:CDS
CCTTCATATGTAGCACCACT+AGG 0.535657 3.4:-10919867 None:intergenic
GATAATATCATACATCTCTC+CGG 0.536661 3.4:-10924055 None:intergenic
TCCATCTAAATTCACATGAA+GGG 0.538947 3.4:-10921478 None:intergenic
CTGCATCCACTCCTGAAAGT+CGG 0.542054 3.4:-10923727 None:intergenic
CTCCATCATCGAATTCAGAT+GGG 0.542680 3.4:-10923700 None:intergenic
TCTACATTGGCTACAGACAT+TGG 0.544183 3.4:-10919633 None:intergenic
ATGGATTACAGTATGTTGGT+TGG 0.545087 3.4:+10923608 MS.gene039654:CDS
CCTTTAGATATAGTCTCTCC+TGG 0.546752 3.4:-10920617 None:intergenic
CGGACGTGTTTATAATAAGC+AGG 0.548622 3.4:-10922437 None:intergenic
GTCGTCATCGTCTTCACAAG+AGG 0.549154 3.4:+10919683 MS.gene039654:CDS
CCATCAGCTGAACTCCGTCT+AGG 0.552578 3.4:-10920476 None:intergenic
CAAAATGGGAATAGGTATGA+TGG 0.552931 3.4:+10920143 MS.gene039654:CDS
GGCATCATAGACATATTACA+AGG 0.552961 3.4:+10924087 MS.gene039654:CDS
CAATCTCAGCCGTTGATCCA+AGG 0.553953 3.4:+10924169 MS.gene039654:CDS
TTCATGCAGACAAGTTGATA+GGG 0.556313 3.4:+10923556 MS.gene039654:intron
GATTACATGATATCAATATG+TGG 0.557421 3.4:+10922056 MS.gene039654:CDS
GGACATTACGACCTATCCTT+CGG 0.558170 3.4:+10920367 MS.gene039654:CDS
CTTATGTTGAATCTGCAACT+AGG 0.559603 3.4:+10920656 MS.gene039654:CDS
TATGCATACCTGAATACTAC+CGG 0.561063 3.4:-10921512 None:intergenic
AGGGTGAGGTGGCGTATGCT+TGG 0.561454 3.4:-10921459 None:intergenic
AATGGTTTGCCGAAAGGGAA+TGG 0.561505 3.4:+10920176 MS.gene039654:CDS
TGGACTAGATTTCCACCAGA+AGG 0.561843 3.4:+10921434 MS.gene039654:CDS
CCAGGAGAGACTATATCTAA+AGG 0.568260 3.4:+10920617 MS.gene039654:CDS
GATAAGTTTCCACATGGTCA+AGG 0.568574 3.4:+10919762 MS.gene039654:CDS
CACATGTGAAAGTCCTCAGT+TGG 0.574735 3.4:+10924020 MS.gene039654:CDS
TGGGAAAATGGTTTGCCGAA+AGG 0.575980 3.4:+10920170 MS.gene039654:CDS
TCAACAGTGAAAACCTCTTG+AGG 0.576516 3.4:-10920314 None:intergenic
GAATGGCATTGTCAAAGCCT+GGG 0.576526 3.4:+10919554 MS.gene039654:CDS
ATGGTAATGGGAAGCCTAGA+CGG 0.578110 3.4:+10920462 MS.gene039654:CDS
GTTGAAAAGACTATGCCAAA+TGG 0.578913 3.4:+10919714 MS.gene039654:CDS
ATTACATGATATCAATATGT+GGG 0.581330 3.4:+10922057 MS.gene039654:CDS
GACGGAGTTCAGCTGATGGA+AGG 0.583727 3.4:+10920480 MS.gene039654:CDS
GTCATCTTCATCATCTACAT+TGG 0.584009 3.4:-10919646 None:intergenic
ATAAAAGCTCCTAAAAGACC+AGG 0.584431 3.4:+10920599 MS.gene039654:CDS
CCTAGTGGTGCTACATATGA+AGG 0.584675 3.4:+10919867 MS.gene039654:CDS
TCTTGAATGGGATCCTCAAG+AGG 0.584761 3.4:+10920301 MS.gene039654:CDS
ATATCATACATCTCTCCGGT+TGG 0.587123 3.4:-10924051 None:intergenic
ATTCATAAGAAAGGAACTCA+TGG 0.587474 3.4:+10920443 MS.gene039654:CDS
GACTTTCAAGAGAATGAGCA+GGG 0.592006 3.4:+10919527 None:intergenic
TGTGAAAGTCCTCAGTTGGT+TGG 0.594621 3.4:+10924024 MS.gene039654:CDS
ACCCCATCTGAATTCGATGA+TGG 0.596388 3.4:+10923698 MS.gene039654:CDS
CCTAGACGGAGTTCAGCTGA+TGG 0.596547 3.4:+10920476 MS.gene039654:CDS
CCATTGGACAGACATTCCGT+TGG 0.597510 3.4:+10921347 MS.gene039654:intron
GCTCCCGAACTGCGACCGCA+AGG 0.599381 3.4:-10923671 None:intergenic
CCAGCGTATTCTCAAAAGCC+CGG 0.600357 3.4:-10922457 None:intergenic
CCATCTGAATTCGATGATGG+AGG 0.601211 3.4:+10923701 MS.gene039654:CDS
TTCAAATCAAGTGATGCACT+TGG 0.601607 3.4:-10921380 None:intergenic
CTTAGTAATCACAGCTCTGA+AGG 0.602212 3.4:+10920503 MS.gene039654:CDS
GGCGGCAATGTTACACCTTG+CGG 0.604078 3.4:+10923656 MS.gene039654:CDS
CAAGGTGTAACATTGCCGCC+AGG 0.605952 3.4:-10923653 None:intergenic
AAGGGAATGGTACGTTTAGG+TGG 0.606012 3.4:+10920189 MS.gene039654:CDS
CTAAATTCACATGAAGGGTG+AGG 0.607299 3.4:-10921473 None:intergenic
CAATTCAATATCTTGTCCGA+AGG 0.609486 3.4:-10920383 None:intergenic
GCATCCACTCCTGAAAGTCG+GGG 0.612590 3.4:-10923725 None:intergenic
GGTACGTTTAGGTGGTCTGA+TGG 0.617080 3.4:+10920197 MS.gene039654:CDS
GTGTGCAAAATGGACATGGT+AGG 0.621136 3.4:+10920042 MS.gene039654:CDS
GGTAGGTTTAGTTGGCCTAG+TGG 0.621887 3.4:+10919852 MS.gene039654:CDS
ACCATTATATTGGTCAATGG+AGG 0.622374 3.4:+10920084 MS.gene039654:CDS
CATCCACTCCTGAAAGTCGG+GGG 0.623264 3.4:-10923724 None:intergenic
AAAGATCCTAAAGAACAAAG+TGG 0.627694 3.4:+10920245 MS.gene039654:CDS
TAGATGGAAAGACTACTGTC+CGG 0.632964 3.4:+10921493 MS.gene039654:CDS
AATTCACATGAAGGGTGAGG+TGG 0.633039 3.4:-10921470 None:intergenic
ATGTATGATTTGTCCTTGTG+AGG 0.634796 3.4:+10920346 MS.gene039654:CDS
TGAGCATCACTAGAACCAGA+TGG 0.635426 3.4:-10920278 None:intergenic
AGAATGAGCAGGGAGCTGAA+TGG 0.636348 3.4:+10919537 None:intergenic
GTTGGTTCGCCAACCAACTG+AGG 0.640547 3.4:-10924033 None:intergenic
AGATACTTACCTTGACCATG+TGG 0.643398 3.4:-10919771 None:intergenic
GTATGCTTGGATCCTTCTGG+TGG 0.648961 3.4:-10921446 None:intergenic
TCTGCATTTGATGAGTTGGG+AGG 0.661937 3.4:+10920536 MS.gene039654:CDS
AAGGGTGTGCAAAATGGACA+TGG 0.663197 3.4:+10920038 MS.gene039654:CDS
ATGGGAATGGTACAATGATG+TGG 0.671388 3.4:+10920120 MS.gene039654:CDS
AGTAATCACAGCTCTGAAGG+AGG 0.672594 3.4:+10920506 MS.gene039654:CDS
TGGCTTGATAAGTTTCCACA+TGG 0.676296 3.4:+10919756 MS.gene039654:CDS
TCCATCATCGAATTCAGATG+GGG 0.681693 3.4:-10923699 None:intergenic
ACTTGGAGCAGGTCTTCCAA+CGG 0.684197 3.4:-10921363 None:intergenic
TAGGTCGTAATGTCCTCACA+AGG 0.705306 3.4:-10920359 None:intergenic
TTTCGAGATACAAGTCCTGG+CGG 0.727190 3.4:+10923638 MS.gene039654:CDS
TCGCACTACTGATAAACCGG+AGG 0.733166 3.4:+10922704 MS.gene039654:CDS
AAAGCTGGAATAAATCGCCG+CGG 0.771520 3.4:+10920570 MS.gene039654:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTGACTTAAATTTTATATTT+CGG + chr3.4:10922760-10922779 MS.gene039654:CDS 10.0%
!! AACAGAAAATATTTAATGTT+TGG - chr3.4:10923863-10923882 None:intergenic 15.0%
!! AACTTTATATATAAGTTAGA+AGG + chr3.4:10923436-10923455 MS.gene039654:intron 15.0%
!! ATAAATTACATTTCAAAAGA+AGG - chr3.4:10923292-10923311 None:intergenic 15.0%
!! ATTATCGAATAAAATTGATT+TGG - chr3.4:10921010-10921029 None:intergenic 15.0%
!! CTAAATTACAAATATTTGAT+AGG - chr3.4:10923481-10923500 None:intergenic 15.0%
!! CTGAATACATTTATATAAAA+GGG + chr3.4:10920899-10920918 MS.gene039654:intron 15.0%
!! GATATTTAACATAAGAAATA+GGG + chr3.4:10923121-10923140 MS.gene039654:intron 15.0%
!! TCTGAATACATTTATATAAA+AGG + chr3.4:10920898-10920917 MS.gene039654:intron 15.0%
!! TGAATACATTTATATAAAAG+GGG + chr3.4:10920900-10920919 MS.gene039654:intron 15.0%
!! TGATATTTAACATAAGAAAT+AGG + chr3.4:10923120-10923139 MS.gene039654:intron 15.0%
!! TTATATATAAAGTTTCAAAC+AGG - chr3.4:10923430-10923449 None:intergenic 15.0%
!!! GTGTTTATAAACTTTTAATT+TGG + chr3.4:10922547-10922566 MS.gene039654:intron 15.0%
!!! TATGATATTATCATCTTTTT+TGG + chr3.4:10924066-10924085 MS.gene039654:CDS 15.0%
!!! TTTTTTTTTTTTTTTGACGT+CGG + chr3.4:10923514-10923533 MS.gene039654:intron 15.0%
!! AAAAAATATTACATGATTGC+AGG + chr3.4:10922397-10922416 MS.gene039654:intron 20.0%
!! ATTACATGATATCAATATGT+GGG + chr3.4:10922057-10922076 MS.gene039654:CDS 20.0%
!! GAAAAAAAAAAGACTATGTT+TGG - chr3.4:10921098-10921117 None:intergenic 20.0%
!! GAATACATTTATATAAAAGG+GGG + chr3.4:10920901-10920920 MS.gene039654:intron 20.0%
!! TATTTAATGTTTGGTCTAAT+TGG - chr3.4:10923854-10923873 None:intergenic 20.0%
!!! AAACATATTATTAGCTTCTT+CGG + chr3.4:10922904-10922923 MS.gene039654:intron 20.0%
!!! TATTTATGTAAGCAAAGTTT+TGG + chr3.4:10921555-10921574 MS.gene039654:intron 20.0%
!!! TGATTGCATTTATATTTTCA+GGG + chr3.4:10922001-10922020 MS.gene039654:intron 20.0%
!!! TGCAATCATGTAATATTTTT+TGG - chr3.4:10922398-10922417 None:intergenic 20.0%
!!! TTAACATTGATAGCTATAAA+TGG + chr3.4:10921242-10921261 MS.gene039654:intron 20.0%
!!! TTGATTGCATTTATATTTTC+AGG + chr3.4:10922000-10922019 MS.gene039654:intron 20.0%
! AAAAATGGGAACCATTATAT+TGG + chr3.4:10920074-10920093 MS.gene039654:CDS 25.0%
! ATCATATGACTAAAAATTGC+AGG - chr3.4:10923072-10923091 None:intergenic 25.0%
! GAAATTTCCTAATGAAAACT+CGG + chr3.4:10921197-10921216 MS.gene039654:intron 25.0%
! GATTACATGATATCAATATG+TGG + chr3.4:10922056-10922075 MS.gene039654:CDS 25.0%
! GCTTAAATTAGAATCAATTC+TGG + chr3.4:10920981-10921000 MS.gene039654:intron 25.0%
! GGGTTATGAATTTGAAAAAT+GGG + chr3.4:10919964-10919983 MS.gene039654:CDS 25.0%
! GGTTATGAATTTGAAAAATG+GGG + chr3.4:10919965-10919984 MS.gene039654:CDS 25.0%
! GTCACATTTCATTAAATTTC+AGG + chr3.4:10922599-10922618 MS.gene039654:intron 25.0%
! GTTGAGAGAATTGATAAAAA+AGG - chr3.4:10922227-10922246 None:intergenic 25.0%
! GTTTGAAAGTTGAAACTTTA+AGG - chr3.4:10923175-10923194 None:intergenic 25.0%
! TAAATTAGAATCAATTCTGG+AGG + chr3.4:10920984-10921003 MS.gene039654:intron 25.0%
! TCTAAATTCACAGAATATGA+GGG + chr3.4:10921972-10921991 MS.gene039654:intron 25.0%
! TCTTCAACATGAAAGAATTA+TGG + chr3.4:10923589-10923608 MS.gene039654:CDS 25.0%
! TGATACTTATAAAGGGAATT+GGG + chr3.4:10919944-10919963 MS.gene039654:CDS 25.0%
! TGATAGGAAAAACTGTATTA+GGG - chr3.4:10923465-10923484 None:intergenic 25.0%
! TGGGTTATGAATTTGAAAAA+TGG + chr3.4:10919963-10919982 MS.gene039654:CDS 25.0%
! TTACTAATTTCTTGTACCAT+TGG + chr3.4:10921331-10921350 MS.gene039654:intron 25.0%
! TTATATCTAGCCAATGAAAA+TGG - chr3.4:10922198-10922217 None:intergenic 25.0%
! TTCAAAAGAAGGCTAAAATA+AGG - chr3.4:10923281-10923300 None:intergenic 25.0%
! TTGATAGGAAAAACTGTATT+AGG - chr3.4:10923466-10923485 None:intergenic 25.0%
! TTGTAAGCATATAAAGTGAA+GGG - chr3.4:10922249-10922268 None:intergenic 25.0%
! TTTGTAAGCATATAAAGTGA+AGG - chr3.4:10922250-10922269 None:intergenic 25.0%
!! AAAATCAATTCCACAACTTT+TGG + chr3.4:10921043-10921062 MS.gene039654:intron 25.0%
!! AAAATTGATTCCAAAAGTTG+TGG - chr3.4:10921056-10921075 None:intergenic 25.0%
!! AATTATGGATTACAGTATGT+TGG + chr3.4:10923604-10923623 MS.gene039654:CDS 25.0%
!! TGTATTGTGTTTTATGTTTC+AGG + chr3.4:10923941-10923960 MS.gene039654:intron 25.0%
!! TTCCTTGATTCTAATTTTCA+CGG + chr3.4:10921303-10921322 MS.gene039654:intron 25.0%
!!! AAATAAGGTCATTTTGTTCA+CGG - chr3.4:10923266-10923285 None:intergenic 25.0%
!!! GTTTGTTTTGAAGTTATTGA+TGG + chr3.4:10922934-10922953 MS.gene039654:intron 25.0%
!!! TTCATTTTAAGTTGCAAACA+CGG + chr3.4:10921700-10921719 MS.gene039654:intron 25.0%
!!! TTGTCTTTACTTTTGAACTT+TGG + chr3.4:10923314-10923333 MS.gene039654:intron 25.0%
AAAATCTGCATTTGATGAGT+TGG + chr3.4:10920532-10920551 MS.gene039654:CDS 30.0%
AAACCAAAACTTGTAAAGTG+TGG - chr3.4:10922880-10922899 None:intergenic 30.0%
AAAGATCCTAAAGAACAAAG+TGG + chr3.4:10920245-10920264 MS.gene039654:CDS 30.0%
AAATCTGCATTTGATGAGTT+GGG + chr3.4:10920533-10920552 MS.gene039654:CDS 30.0%
ACTCAGAAACAATAAGAGAA+GGG - chr3.4:10921120-10921139 None:intergenic 30.0%
AGGCTAAAAATCAATTGTAG+AGG + chr3.4:10920940-10920959 MS.gene039654:intron 30.0%
ATGAATTTGAAAAATGGGGA+TGG + chr3.4:10919969-10919988 MS.gene039654:CDS 30.0%
ATTCATAAGAAAGGAACTCA+TGG + chr3.4:10920443-10920462 MS.gene039654:CDS 30.0%
ATTGATATCATGTAATCAGC+AGG - chr3.4:10922053-10922072 None:intergenic 30.0%
CATCTGGTGATACTTATAAA+GGG + chr3.4:10919937-10919956 MS.gene039654:CDS 30.0%
CCATCATAAAAATCACCATT+AGG - chr3.4:10920008-10920027 None:intergenic 30.0%
GAGCTTAATTATTGTGTGTT+TGG + chr3.4:10920758-10920777 MS.gene039654:intron 30.0%
GATAATATCATACATCTCTC+CGG - chr3.4:10924058-10924077 None:intergenic 30.0%
GCATTCAATGAATGAATGAA+AGG + chr3.4:10923381-10923400 MS.gene039654:intron 30.0%
GTAGGTATCAATGGAAAAAT+GGG + chr3.4:10920060-10920079 MS.gene039654:CDS 30.0%
GTCTAAATTCACAGAATATG+AGG + chr3.4:10921971-10921990 MS.gene039654:intron 30.0%
GTGAAAATTAGAATCAAGGA+AGG - chr3.4:10921304-10921323 None:intergenic 30.0%
GTGATACTTATAAAGGGAAT+TGG + chr3.4:10919943-10919962 MS.gene039654:CDS 30.0%
TAAGTACCACTTTGTTCTTT+AGG - chr3.4:10920254-10920273 None:intergenic 30.0%
TCAATATATATTCTCCACGT+GGG - chr3.4:10921179-10921198 None:intergenic 30.0%
TCATCTGGTGATACTTATAA+AGG + chr3.4:10919936-10919955 MS.gene039654:CDS 30.0%
TCCATCTAAATTCACATGAA+GGG - chr3.4:10921481-10921500 None:intergenic 30.0%
TGAAAACTATCACATCAAAG+TGG - chr3.4:10922331-10922350 None:intergenic 30.0%
TGAGTTCCTTTCTTATGAAT+CGG - chr3.4:10920443-10920462 None:intergenic 30.0%
TTACTCTCATATCATCTGTA+TGG + chr3.4:10920728-10920747 MS.gene039654:intron 30.0%
TTCAATATATATTCTCCACG+TGG - chr3.4:10921180-10921199 None:intergenic 30.0%
TTCCATCTAAATTCACATGA+AGG - chr3.4:10921482-10921501 None:intergenic 30.0%
! AAAGTGAGTTCCATTTTCAT+TGG + chr3.4:10922185-10922204 MS.gene039654:intron 30.0%
! AACGTTGTTGTCGTTTAAAA+AGG - chr3.4:10923216-10923235 None:intergenic 30.0%
! AAGGTTCAACATTTTGTTCA+CGG - chr3.4:10923197-10923216 None:intergenic 30.0%
! ATGGATTCAAGGTTTTACAA+TGG + chr3.4:10919824-10919843 MS.gene039654:CDS 30.0%
! ATTGATGGTTGTATGTATGT+AGG + chr3.4:10919798-10919817 MS.gene039654:CDS 30.0%
! ATTGTGTTTTATGTTTCAGG+TGG + chr3.4:10923944-10923963 MS.gene039654:intron 30.0%
! CCTAATGGTGATTTTTATGA+TGG + chr3.4:10920005-10920024 MS.gene039654:CDS 30.0%
! CTTGTTATATGCATGGTAAA+GGG + chr3.4:10919901-10919920 MS.gene039654:CDS 30.0%
! GAAAAACCGATTCATAAGAA+AGG + chr3.4:10920434-10920453 MS.gene039654:CDS 30.0%
! TATGATGGTGAATGGAAAAA+GGG + chr3.4:10920020-10920039 MS.gene039654:CDS 30.0%
! TCTGATGGTAGTTTTTATGT+CGG + chr3.4:10920212-10920231 MS.gene039654:CDS 30.0%
! TGATTGAAAATATACCGACT+AGG - chr3.4:10923770-10923789 None:intergenic 30.0%
! TGGATTCAAGGTTTTACAAT+GGG + chr3.4:10919825-10919844 MS.gene039654:CDS 30.0%
! TTATGATGGTGAATGGAAAA+AGG + chr3.4:10920019-10920038 MS.gene039654:CDS 30.0%
! TTTTACTTCTGCTTTCTTCA+TGG - chr3.4:10922168-10922187 None:intergenic 30.0%
!! AATGGTTTGTTTAATGGGAA+TGG + chr3.4:10920107-10920126 MS.gene039654:CDS 30.0%
!! ACTATGTTTGGTTTCACTTT+TGG - chr3.4:10921086-10921105 None:intergenic 30.0%
!! ACTTGTTATATGCATGGTAA+AGG + chr3.4:10919900-10919919 MS.gene039654:CDS 30.0%
!! GTGATTTTTATGATGGTGAA+TGG + chr3.4:10920012-10920031 MS.gene039654:CDS 30.0%
!! TTCAAGACTTGTTATATGCA+TGG + chr3.4:10919894-10919913 MS.gene039654:CDS 30.0%
!!! TCATGGTTTTGATCATATAC+CGG - chr3.4:10922151-10922170 None:intergenic 30.0%
!!! TCATTTTAAGTTGCAAACAC+GGG + chr3.4:10921701-10921720 MS.gene039654:intron 30.0%
!!! TTCCTGTTAGTTTTACACAA+TGG - chr3.4:10922502-10922521 None:intergenic 30.0%
AAGAAAGGAACTCATGGTAA+TGG + chr3.4:10920449-10920468 MS.gene039654:CDS 35.0%
AAGGTAAGTTAAATGACCTC+TGG - chr3.4:10923156-10923175 None:intergenic 35.0%
AATCAGCAACTGCAAAGAAA+AGG + chr3.4:10919592-10919611 MS.gene039654:CDS 35.0%
ACCATTATATTGGTCAATGG+AGG + chr3.4:10920084-10920103 MS.gene039654:CDS 35.0%
ACCCTTCATGTGAATTTAGA+TGG + chr3.4:10921477-10921496 MS.gene039654:CDS 35.0%
AGAAAGGAACTCATGGTAAT+GGG + chr3.4:10920450-10920469 MS.gene039654:CDS 35.0%
AGCGAGAATCTCTTTCTTAT+TGG - chr3.4:10920848-10920867 None:intergenic 35.0%
AGTGGTACTTATTATCCATC+TGG + chr3.4:10920263-10920282 MS.gene039654:CDS 35.0%
ATAAAAGCTCCTAAAAGACC+AGG + chr3.4:10920599-10920618 MS.gene039654:CDS 35.0%
ATCAGCAACTGCAAAGAAAA+GGG + chr3.4:10919593-10919612 MS.gene039654:CDS 35.0%
ATCTCATCATAGATCCTAGT+CGG + chr3.4:10923753-10923772 MS.gene039654:intron 35.0%
ATGGTCAAGGTAAGTATCTT+TGG + chr3.4:10919775-10919794 MS.gene039654:CDS 35.0%
CAAAATGGGAATAGGTATGA+TGG + chr3.4:10920143-10920162 MS.gene039654:CDS 35.0%
CAAATAGTCTCTTACTGTGT+TGG + chr3.4:10921934-10921953 MS.gene039654:intron 35.0%
CAATTCAATATCTTGTCCGA+AGG - chr3.4:10920386-10920405 None:intergenic 35.0%
CACAAAAGAAGGTAATGTCT+AGG + chr3.4:10922525-10922544 MS.gene039654:intron 35.0%
CACTCAGAAACAATAAGAGA+AGG - chr3.4:10921121-10921140 None:intergenic 35.0%
CATGGTAAAGGGACTTATAT+AGG + chr3.4:10919912-10919931 MS.gene039654:CDS 35.0%
CCTGTGTAAAAATCACCATT+TGG - chr3.4:10919732-10919751 None:intergenic 35.0%
CTAGTCCAAACTTTCTCTTT+GGG - chr3.4:10921422-10921441 None:intergenic 35.0%
CTCAATATGTCATCCATAGA+CGG + chr3.4:10922655-10922674 MS.gene039654:CDS 35.0%
CTCCATTGTGTAAAACTAAC+AGG + chr3.4:10922497-10922516 MS.gene039654:CDS 35.0%
CTGCTTATTATAAACACGTC+CGG + chr3.4:10922438-10922457 MS.gene039654:CDS 35.0%
CTTATGTTGAATCTGCAACT+AGG + chr3.4:10920656-10920675 MS.gene039654:CDS 35.0%
CTTCGGACAAGATATTGAAT+TGG + chr3.4:10920384-10920403 MS.gene039654:CDS 35.0%
GAATAGGTATGATGGTTGTT+GGG + chr3.4:10920151-10920170 MS.gene039654:CDS 35.0%
GAGAAGATAGAGGCTAAAAT+AGG + chr3.4:10921759-10921778 MS.gene039654:intron 35.0%
GGAACCATTATATTGGTCAA+TGG + chr3.4:10920081-10920100 MS.gene039654:CDS 35.0%
GGCATCATAGACATATTACA+AGG + chr3.4:10924087-10924106 MS.gene039654:CDS 35.0%
GGTAAGTATCTTTGGATTGA+TGG + chr3.4:10919783-10919802 MS.gene039654:CDS 35.0%
GGTAATGAGAGTTATCCTAA+TGG + chr3.4:10919990-10920009 MS.gene039654:CDS 35.0%
GGTAGGTATCAATGGAAAAA+TGG + chr3.4:10920059-10920078 MS.gene039654:CDS 35.0%
GTACAATGATGTGGCAAAAT+GGG + chr3.4:10920129-10920148 MS.gene039654:CDS 35.0%
GTCATCTTCATCATCTACAT+TGG - chr3.4:10919649-10919668 None:intergenic 35.0%
GTTGAAAAGACTATGCCAAA+TGG + chr3.4:10919714-10919733 MS.gene039654:CDS 35.0%
GTTGTATGTATGTAGGTGAA+TGG + chr3.4:10919805-10919824 MS.gene039654:CDS 35.0%
TAGGAAAAACTGTATTAGGG+AGG - chr3.4:10923462-10923481 None:intergenic 35.0%
TAGTGATGCTCATCTTGAAT+GGG + chr3.4:10920289-10920308 MS.gene039654:CDS 35.0%
TATATTGGTCAATGGAGGAA+TGG + chr3.4:10920089-10920108 MS.gene039654:CDS 35.0%
TATGATGGTTGTTGGGAAAA+TGG + chr3.4:10920158-10920177 MS.gene039654:CDS 35.0%
TATGCATACCTGAATACTAC+CGG - chr3.4:10921515-10921534 None:intergenic 35.0%
TCATTGAATGCGAGCAAAAA+TGG - chr3.4:10923372-10923391 None:intergenic 35.0%
TCCTCCATTGACCAATATAA+TGG - chr3.4:10920088-10920107 None:intergenic 35.0%
TCTAGTCCAAACTTTCTCTT+TGG - chr3.4:10921423-10921442 None:intergenic 35.0%
TGCCGTGAAAATTAGAATCA+AGG - chr3.4:10921308-10921327 None:intergenic 35.0%
TGCTTATTATAAACACGTCC+GGG + chr3.4:10922439-10922458 MS.gene039654:CDS 35.0%
TTCAAATCAAGTGATGCACT+TGG - chr3.4:10921383-10921402 None:intergenic 35.0%
TTCTGTCATTCAACTAAGAG+AGG - chr3.4:10923000-10923019 None:intergenic 35.0%
TTGATCCCAAAGAGAAAGTT+TGG + chr3.4:10921414-10921433 MS.gene039654:CDS 35.0%
TTGTGATAGAGAGAAGATAG+AGG + chr3.4:10921749-10921768 MS.gene039654:intron 35.0%
TTTGGACGGGAATTCATTAA+AGG - chr3.4:10923242-10923261 None:intergenic 35.0%
! ACACCACACTTTACAAGTTT+TGG + chr3.4:10922874-10922893 MS.gene039654:intron 35.0%
! ACAGTTACCGAGTTTTCATT+AGG - chr3.4:10921207-10921226 None:intergenic 35.0%
! AGATCCTTAAGTGTTGTTGT+TGG - chr3.4:10922741-10922760 None:intergenic 35.0%
! ATGGATTACAGTATGTTGGT+TGG + chr3.4:10923608-10923627 MS.gene039654:CDS 35.0%
! ATGTATGATTTGTCCTTGTG+AGG + chr3.4:10920346-10920365 MS.gene039654:CDS 35.0%
! CATCTTCAGAGTTTTTGTAG+AGG + chr3.4:10924218-10924237 MS.gene039654:CDS 35.0%
! CCAAATGGTGATTTTTACAC+AGG + chr3.4:10919729-10919748 MS.gene039654:CDS 35.0%
! GGATTCAAGGTTTTACAATG+GGG + chr3.4:10919826-10919845 MS.gene039654:CDS 35.0%
! GTGATTTTTACACAGGACAA+TGG + chr3.4:10919736-10919755 MS.gene039654:CDS 35.0%
! TATGTAGGTGAATGGATTCA+AGG + chr3.4:10919813-10919832 MS.gene039654:CDS 35.0%
! TGTTTCAGGTGGATTCAATT+AGG + chr3.4:10923955-10923974 MS.gene039654:intron 35.0%
!! ATGTTTGGTTTCACTTTTGG+AGG - chr3.4:10921083-10921102 None:intergenic 35.0%
!! GGAGGAATGGTTTGTTTAAT+GGG + chr3.4:10920102-10920121 MS.gene039654:CDS 35.0%
!! GTAGTTTTTATGTCGGTGTT+TGG + chr3.4:10920219-10920238 MS.gene039654:CDS 35.0%
!! TGGAGGAATGGTTTGTTTAA+TGG + chr3.4:10920101-10920120 MS.gene039654:CDS 35.0%
!! TTCATGCAGACAAGTTGATA+GGG + chr3.4:10923556-10923575 MS.gene039654:intron 35.0%
!!! AAAAAGCTTCCACTTTTTCC+AGG - chr3.4:10922110-10922129 None:intergenic 35.0%
!!! ATTTTGTTCACGGTTTTGGA+CGG - chr3.4:10923256-10923275 None:intergenic 35.0%
!!! CATTTTAAGTTGCAAACACG+GGG + chr3.4:10921702-10921721 MS.gene039654:intron 35.0%
!!! CTGTTAGTTTTACACAATGG+AGG - chr3.4:10922499-10922518 None:intergenic 35.0%
AGAGCCAACAACAACACTTA+AGG + chr3.4:10922734-10922753 MS.gene039654:CDS 40.0%
AGATACTTACCTTGACCATG+TGG - chr3.4:10919774-10919793 None:intergenic 40.0%
ATATCATACATCTCTCCGGT+TGG - chr3.4:10924054-10924073 None:intergenic 40.0%
ATGGACATGGTAGGTATCAA+TGG + chr3.4:10920051-10920070 MS.gene039654:CDS 40.0%
ATGGGAATGGTACAATGATG+TGG + chr3.4:10920120-10920139 MS.gene039654:CDS 40.0%
CAATATCAACCATGCACAAG+AGG - chr3.4:10921890-10921909 None:intergenic 40.0%
CAATATCTTGTCCGAAGGAT+AGG - chr3.4:10920381-10920400 None:intergenic 40.0%
CAGGTTCGCTTTGTCATAAT+GGG + chr3.4:10922618-10922637 MS.gene039654:intron 40.0%
CATGATTCGTTCACCTAGTT+AGG - chr3.4:10921582-10921601 None:intergenic 40.0%
CCAGGAGAGACTATATCTAA+AGG + chr3.4:10920617-10920636 MS.gene039654:CDS 40.0%
CCTTTAGATATAGTCTCTCC+TGG - chr3.4:10920620-10920639 None:intergenic 40.0%
CCTTTATCTTCCTCTAAACC+CGG - chr3.4:10920410-10920429 None:intergenic 40.0%
CGGACGTGTTTATAATAAGC+AGG - chr3.4:10922440-10922459 None:intergenic 40.0%
CTAAACGTACCATTCCCTTT+CGG - chr3.4:10920188-10920207 None:intergenic 40.0%
CTAAATTCACATGAAGGGTG+AGG - chr3.4:10921476-10921495 None:intergenic 40.0%
CTACAGGCACACATAAATAG+TGG - chr3.4:10922846-10922865 None:intergenic 40.0%
CTAGTGATGCTCATCTTGAA+TGG + chr3.4:10920288-10920307 MS.gene039654:CDS 40.0%
CTATCAACTTGTCTGCATGA+AGG - chr3.4:10923557-10923576 None:intergenic 40.0%
CTCCATCATCGAATTCAGAT+GGG - chr3.4:10923703-10923722 None:intergenic 40.0%
GACAAGATATTGAATTGGCC+GGG + chr3.4:10920389-10920408 MS.gene039654:CDS 40.0%
GATAAGTTTCCACATGGTCA+AGG + chr3.4:10919762-10919781 MS.gene039654:CDS 40.0%
GGAATAGGTATGATGGTTGT+TGG + chr3.4:10920150-10920169 MS.gene039654:CDS 40.0%
GGACAAGATATTGAATTGGC+CGG + chr3.4:10920388-10920407 MS.gene039654:CDS 40.0%
GGGACTTATATAGGTTCATC+TGG + chr3.4:10919921-10919940 MS.gene039654:CDS 40.0%
GGTACAATGATGTGGCAAAA+TGG + chr3.4:10920128-10920147 MS.gene039654:CDS 40.0%
GGTAGTATTCAGGTATGCAT+AGG + chr3.4:10921514-10921533 MS.gene039654:intron 40.0%
GTCGATTGTAACTTGAGAGT+AGG + chr3.4:10922960-10922979 MS.gene039654:intron 40.0%
GTTCCAAAGTAAAGCCAAAG+TGG - chr3.4:10923342-10923361 None:intergenic 40.0%
TAGATGGAAAGACTACTGTC+CGG + chr3.4:10921493-10921512 MS.gene039654:CDS 40.0%
TATGTGGGAATGAAGCTCTT+CGG + chr3.4:10922072-10922091 MS.gene039654:CDS 40.0%
TCAACAGTGAAAACCTCTTG+AGG - chr3.4:10920317-10920336 None:intergenic 40.0%
TCAGGTTCGCTTTGTCATAA+TGG + chr3.4:10922617-10922636 MS.gene039654:intron 40.0%
TCCATCATCGAATTCAGATG+GGG - chr3.4:10923702-10923721 None:intergenic 40.0%
TCTATTTGACGAACGATGAC+CGG + chr3.4:10922129-10922148 MS.gene039654:CDS 40.0%
TGAATCTGCAACTAGGTATC+AGG + chr3.4:10920663-10920682 MS.gene039654:CDS 40.0%
TGATGTGGCAAAATGGGAAT+AGG + chr3.4:10920135-10920154 MS.gene039654:CDS 40.0%
TGGCTTGATAAGTTTCCACA+TGG + chr3.4:10919756-10919775 MS.gene039654:CDS 40.0%
! AACAGGAAGTGCACAAAAGA+AGG + chr3.4:10922514-10922533 MS.gene039654:CDS 40.0%
! CAAGGTTTTACAATGGGGAA+AGG + chr3.4:10919831-10919850 MS.gene039654:CDS 40.0%
! CTTAGTAATCACAGCTCTGA+AGG + chr3.4:10920503-10920522 MS.gene039654:CDS 40.0%
! CTTTCAAGTCAAACCGTCTA+TGG - chr3.4:10922671-10922690 None:intergenic 40.0%
! GCAATTTTGCAGCTCATACA+AGG - chr3.4:10923050-10923069 None:intergenic 40.0%
! GTTTTACAATGGGGAAAGGT+AGG + chr3.4:10919835-10919854 MS.gene039654:CDS 40.0%
! TCTACATTGGCTACAGACAT+TGG - chr3.4:10919636-10919655 None:intergenic 40.0%
! TGGAAAAAGGGTGTGCAAAA+TGG + chr3.4:10920032-10920051 MS.gene039654:CDS 40.0%
!! ATAGTCTCTCCTGGTCTTTT+AGG - chr3.4:10920611-10920630 None:intergenic 40.0%
!! CATAGACGGTTTGACTTGAA+AGG + chr3.4:10922669-10922688 MS.gene039654:CDS 40.0%
!! CTTCATGCAGACAAGTTGAT+AGG + chr3.4:10923555-10923574 MS.gene039654:intron 40.0%
!! GCAAAGTTTTGGTCCTAACT+AGG + chr3.4:10921566-10921585 MS.gene039654:intron 40.0%
!! GGTCATTTTGTTCACGGTTT+TGG - chr3.4:10923260-10923279 None:intergenic 40.0%
!! TTTCCTAACTGTTGATTCCC+AGG - chr3.4:10919574-10919593 None:intergenic 40.0%
!! TTTGAACTTTGGTGCCACTT+TGG + chr3.4:10923325-10923344 MS.gene039654:intron 40.0%
!! TTTGGTTTCACTTTTGGAGG+AGG - chr3.4:10921080-10921099 None:intergenic 40.0%
!!! TTTTGTTCACGGTTTTGGAC+GGG - chr3.4:10923255-10923274 None:intergenic 40.0%
AAAGCTGGAATAAATCGCCG+CGG + chr3.4:10920570-10920589 MS.gene039654:CDS 45.0%
AAGCCTGGGAATCAACAGTT+AGG + chr3.4:10919568-10919587 MS.gene039654:CDS 45.0%
AAGGGAATGGTACGTTTAGG+TGG + chr3.4:10920189-10920208 MS.gene039654:CDS 45.0%
AATAGGGAAAACTGCACCAG+AGG + chr3.4:10923137-10923156 MS.gene039654:intron 45.0%
AATTCACATGAAGGGTGAGG+TGG - chr3.4:10921473-10921492 None:intergenic 45.0%
ACCCCATCTGAATTCGATGA+TGG + chr3.4:10923698-10923717 MS.gene039654:CDS 45.0%
ACTACTGTCCGGTAGTATTC+AGG + chr3.4:10921504-10921523 MS.gene039654:CDS 45.0%
ATGTGGGAATGAAGCTCTTC+GGG + chr3.4:10922073-10922092 MS.gene039654:CDS 45.0%
ATTGAATTGGCCGGGTTTAG+AGG + chr3.4:10920397-10920416 MS.gene039654:CDS 45.0%
CACATGTGAAAGTCCTCAGT+TGG + chr3.4:10924020-10924039 MS.gene039654:CDS 45.0%
CACTTTCGAGATACAAGTCC+TGG + chr3.4:10923635-10923654 MS.gene039654:CDS 45.0%
CCGGGTTTAGAGGAAGATAA+AGG + chr3.4:10920407-10920426 MS.gene039654:CDS 45.0%
CCTCCATCATCGAATTCAGA+TGG - chr3.4:10923704-10923723 None:intergenic 45.0%
CCTGCAAAATTCTTCGAACC+AGG - chr3.4:10922796-10922815 None:intergenic 45.0%
CCTTCATATGTAGCACCACT+AGG - chr3.4:10919870-10919889 None:intergenic 45.0%
CGAAAGGGAATGGTACGTTT+AGG + chr3.4:10920186-10920205 MS.gene039654:CDS 45.0%
CTCTCATCTCCTGGAAAAAG+TGG + chr3.4:10922098-10922117 MS.gene039654:CDS 45.0%
GAATGGCATTGTCAAAGCCT+GGG + chr3.4:10919554-10919573 MS.gene039654:CDS 45.0%
GACTTGAAAGGTTCGACGTT+TGG + chr3.4:10922681-10922700 MS.gene039654:CDS 45.0%
GAGGCAATTCTGTTCAAAGC+TGG + chr3.4:10920555-10920574 MS.gene039654:CDS 45.0%
GGACATTACGACCTATCCTT+CGG + chr3.4:10920367-10920386 MS.gene039654:CDS 45.0%
GGGGTTGCACGATAAATTAG+AGG + chr3.4:10920920-10920939 MS.gene039654:intron 45.0%
GTGTGCAAAATGGACATGGT+AGG + chr3.4:10920042-10920061 MS.gene039654:CDS 45.0%
TAGGTCGTAATGTCCTCACA+AGG - chr3.4:10920362-10920381 None:intergenic 45.0%
TATGTGTGCCTGTAGCATGT+AGG + chr3.4:10922851-10922870 MS.gene039654:intron 45.0%
TATTTCGGTTGCAGAAGTCC+TGG + chr3.4:10922775-10922794 MS.gene039654:CDS 45.0%
TCAACGGCTGAGATTGAAGT+TGG - chr3.4:10924165-10924184 None:intergenic 45.0%
TCTTGAATGGGATCCTCAAG+AGG + chr3.4:10920301-10920320 MS.gene039654:CDS 45.0%
TGAATGGCATTGTCAAAGCC+TGG + chr3.4:10919553-10919572 MS.gene039654:CDS 45.0%
TGAGCATCACTAGAACCAGA+TGG - chr3.4:10920281-10920300 None:intergenic 45.0%
TGGGGAAAGGTAGGTTTAGT+TGG + chr3.4:10919844-10919863 MS.gene039654:CDS 45.0%
TGGTCGCACTACTGATAAAC+CGG + chr3.4:10922701-10922720 MS.gene039654:CDS 45.0%
TGTGAAAGTCCTCAGTTGGT+TGG + chr3.4:10924024-10924043 MS.gene039654:CDS 45.0%
TTTAACCTGTAAAGCCCACG+TGG + chr3.4:10921162-10921181 MS.gene039654:intron 45.0%
TTTCGAGATACAAGTCCTGG+CGG + chr3.4:10923638-10923657 MS.gene039654:CDS 45.0%
! AAGCGTTTCGAGTATAGCCT+TGG - chr3.4:10924189-10924208 None:intergenic 45.0%
! AAGGGTGTGCAAAATGGACA+TGG + chr3.4:10920038-10920057 MS.gene039654:CDS 45.0%
! AATGGTTTGCCGAAAGGGAA+TGG + chr3.4:10920176-10920195 MS.gene039654:CDS 45.0%
! CCATCTGAATTCGATGATGG+AGG + chr3.4:10923701-10923720 MS.gene039654:CDS 45.0%
! CGAGTATAGCCTTGGATCAA+CGG - chr3.4:10924181-10924200 None:intergenic 45.0%
! GCTTTTCCGCAAAGCCATTT+CGG - chr3.4:10924001-10924020 None:intergenic 45.0%
! GGAGCTTTTATTCTCAACCG+CGG - chr3.4:10920590-10920609 None:intergenic 45.0%
! GGGAAAATGGTTTGCCGAAA+GGG + chr3.4:10920171-10920190 MS.gene039654:CDS 45.0%
! TCTGCATTTGATGAGTTGGG+AGG + chr3.4:10920536-10920555 MS.gene039654:CDS 45.0%
! TGGACTAGATTTCCACCAGA+AGG + chr3.4:10921434-10921453 MS.gene039654:CDS 45.0%
! TGGGAAAATGGTTTGCCGAA+AGG + chr3.4:10920170-10920189 MS.gene039654:CDS 45.0%
! TTTTCGAAGCCTCTTGTGCA+TGG + chr3.4:10921878-10921897 MS.gene039654:intron 45.0%
!! AGTAATCACAGCTCTGAAGG+AGG + chr3.4:10920506-10920525 MS.gene039654:CDS 45.0%
!! ATGGTAATGGGAAGCCTAGA+CGG + chr3.4:10920462-10920481 MS.gene039654:CDS 45.0%
!! CCTAGTGGTGCTACATATGA+AGG + chr3.4:10919867-10919886 MS.gene039654:CDS 45.0%
!! CCTGGTTCGAAGAATTTTGC+AGG + chr3.4:10922793-10922812 MS.gene039654:CDS 45.0%
!! GTGCCACTTTGGCTTTACTT+TGG + chr3.4:10923336-10923355 MS.gene039654:intron 45.0%
ACGCTGGTCACGAAGTTCTT+CGG + chr3.4:10922473-10922492 MS.gene039654:CDS 50.0%
ACTTGGAGCAGGTCTTCCAA+CGG - chr3.4:10921366-10921385 None:intergenic 50.0%
ATTCTCCACGTGGGCTTTAC+AGG - chr3.4:10921170-10921189 None:intergenic 50.0%
CAATCTCAGCCGTTGATCCA+AGG + chr3.4:10924169-10924188 MS.gene039654:CDS 50.0%
CCAACGGAATGTCTGTCCAA+TGG - chr3.4:10921350-10921369 None:intergenic 50.0%
CCAGCGTATTCTCAAAAGCC+CGG - chr3.4:10922460-10922479 None:intergenic 50.0%
CCATTGGACAGACATTCCGT+TGG + chr3.4:10921347-10921366 MS.gene039654:intron 50.0%
CTGCATCCACTCCTGAAAGT+CGG - chr3.4:10923730-10923749 None:intergenic 50.0%
GGTACGTTTAGGTGGTCTGA+TGG + chr3.4:10920197-10920216 MS.gene039654:CDS 50.0%
GTATGCTTGGATCCTTCTGG+TGG - chr3.4:10921449-10921468 None:intergenic 50.0%
GTCGTCATCGTCTTCACAAG+AGG + chr3.4:10919683-10919702 MS.gene039654:CDS 50.0%
GTTGCAAACACGGGGATGAA+AGG + chr3.4:10921710-10921729 MS.gene039654:intron 50.0%
TCAAGTGATGCACTTGGAGC+AGG - chr3.4:10921377-10921396 None:intergenic 50.0%
TCGCACTACTGATAAACCGG+AGG + chr3.4:10922704-10922723 MS.gene039654:CDS 50.0%
TGCATCCACTCCTGAAAGTC+GGG - chr3.4:10923729-10923748 None:intergenic 50.0%
TGTGGTGTCCTACATGCTAC+AGG - chr3.4:10922862-10922881 None:intergenic 50.0%
! GGTAGGTTTAGTTGGCCTAG+TGG + chr3.4:10919852-10919871 MS.gene039654:CDS 50.0%
CAAGGTGTAACATTGCCGCC+AGG - chr3.4:10923656-10923675 None:intergenic 55.0%
CAGTTGGTTGGCGAACCAAC+CGG + chr3.4:10924036-10924055 MS.gene039654:CDS 55.0%
CATCCACTCCTGAAAGTCGG+GGG - chr3.4:10923727-10923746 None:intergenic 55.0%
CCATCAGCTGAACTCCGTCT+AGG - chr3.4:10920479-10920498 None:intergenic 55.0%
CCTAGACGGAGTTCAGCTGA+TGG + chr3.4:10920476-10920495 MS.gene039654:CDS 55.0%
GACGGAGTTCAGCTGATGGA+AGG + chr3.4:10920480-10920499 MS.gene039654:CDS 55.0%
GCATCCACTCCTGAAAGTCG+GGG - chr3.4:10923728-10923747 None:intergenic 55.0%
GGCGGCAATGTTACACCTTG+CGG + chr3.4:10923656-10923675 MS.gene039654:CDS 55.0%
GGCGTATGCTTGGATCCTTC+TGG - chr3.4:10921452-10921471 None:intergenic 55.0%
TACACCTTGCGGTCGCAGTT+CGG + chr3.4:10923667-10923686 MS.gene039654:CDS 55.0%
!! CCGGGCTTTTGAGAATACGC+TGG + chr3.4:10922457-10922476 MS.gene039654:CDS 55.0%
!! GTTGGCTCTACTTCTGCCTC+CGG - chr3.4:10922723-10922742 None:intergenic 55.0%
!! GTTGGTTCGCCAACCAACTG+AGG - chr3.4:10924036-10924055 None:intergenic 55.0%
ACACCTTGCGGTCGCAGTTC+GGG + chr3.4:10923668-10923687 MS.gene039654:CDS 60.0%
AGGGTGAGGTGGCGTATGCT+TGG - chr3.4:10921462-10921481 None:intergenic 60.0%
CTTCGGGAGCTCTCATCTCC+TGG + chr3.4:10922089-10922108 MS.gene039654:CDS 60.0%
! AAAGCCATTTCGGCTCGCGC+TGG - chr3.4:10923991-10924010 None:intergenic 60.0%
! CGCGAGCCGAAATGGCTTTG+CGG + chr3.4:10923992-10924011 MS.gene039654:CDS 60.0%
AGGCCCCCGACTTTCAGGAG+TGG + chr3.4:10923721-10923740 MS.gene039654:CDS 65.0%
CATGCCAGCGCGAGCCGAAA+TGG + chr3.4:10923984-10924003 MS.gene039654:CDS 65.0%
GATGGAGGCCCCCGACTTTC+AGG + chr3.4:10923716-10923735 MS.gene039654:CDS 65.0%
GCTCCCGAACTGCGACCGCA+AGG - chr3.4:10923674-10923693 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr3.4 gene 10919540 10924248 10919540 ID=MS.gene039654
chr3.4 mRNA 10919540 10924248 10919540 ID=MS.gene039654.t1;Parent=MS.gene039654
chr3.4 exon 10919540 10920684 10919540 ID=MS.gene039654.t1.exon1;Parent=MS.gene039654.t1
chr3.4 CDS 10919540 10920684 10919540 ID=cds.MS.gene039654.t1;Parent=MS.gene039654.t1
chr3.4 exon 10921358 10921525 10921358 ID=MS.gene039654.t1.exon2;Parent=MS.gene039654.t1
chr3.4 CDS 10921358 10921525 10921358 ID=cds.MS.gene039654.t1;Parent=MS.gene039654.t1
chr3.4 exon 10922022 10922187 10922022 ID=MS.gene039654.t1.exon3;Parent=MS.gene039654.t1
chr3.4 CDS 10922022 10922187 10922022 ID=cds.MS.gene039654.t1;Parent=MS.gene039654.t1
chr3.4 exon 10922419 10922535 10922419 ID=MS.gene039654.t1.exon4;Parent=MS.gene039654.t1
chr3.4 CDS 10922419 10922535 10922419 ID=cds.MS.gene039654.t1;Parent=MS.gene039654.t1
chr3.4 exon 10922621 10922814 10922621 ID=MS.gene039654.t1.exon5;Parent=MS.gene039654.t1
chr3.4 CDS 10922621 10922814 10922621 ID=cds.MS.gene039654.t1;Parent=MS.gene039654.t1
chr3.4 exon 10923565 10923770 10923565 ID=MS.gene039654.t1.exon6;Parent=MS.gene039654.t1
chr3.4 CDS 10923565 10923770 10923565 ID=cds.MS.gene039654.t1;Parent=MS.gene039654.t1
chr3.4 exon 10923977 10924248 10923977 ID=MS.gene039654.t1.exon7;Parent=MS.gene039654.t1
chr3.4 CDS 10923977 10924248 10923977 ID=cds.MS.gene039654.t1;Parent=MS.gene039654.t1
Gene Sequence

>MS.gene039654

ATGAGCAGGGAGCTGAATGGCATTGTCAAAGCCTGGGAATCAACAGTTAGGAAATCAGCAACTGCAAAGAAAAGGGCAAACAGCATTTTCAAACCAATGTCTGTAGCCAATGTAGATGATGAAGATGACGACGACAAACAATCGTCGTCATCGTCTTCACAAGAGGTAAGTCATGTTGAAAAGACTATGCCAAATGGTGATTTTTACACAGGACAATGGCTTGATAAGTTTCCACATGGTCAAGGTAAGTATCTTTGGATTGATGGTTGTATGTATGTAGGTGAATGGATTCAAGGTTTTACAATGGGGAAAGGTAGGTTTAGTTGGCCTAGTGGTGCTACATATGAAGGTGAATTCAAGACTTGTTATATGCATGGTAAAGGGACTTATATAGGTTCATCTGGTGATACTTATAAAGGGAATTGGGTTATGAATTTGAAAAATGGGGATGGTAATGAGAGTTATCCTAATGGTGATTTTTATGATGGTGAATGGAAAAAGGGTGTGCAAAATGGACATGGTAGGTATCAATGGAAAAATGGGAACCATTATATTGGTCAATGGAGGAATGGTTTGTTTAATGGGAATGGTACAATGATGTGGCAAAATGGGAATAGGTATGATGGTTGTTGGGAAAATGGTTTGCCGAAAGGGAATGGTACGTTTAGGTGGTCTGATGGTAGTTTTTATGTCGGTGTTTGGAGTAAAGATCCTAAAGAACAAAGTGGTACTTATTATCCATCTGGTTCTAGTGATGCTCATCTTGAATGGGATCCTCAAGAGGTTTTCACTGTTGAGTTGATTGAATGTATGATTTGTCCTTGTGAGGACATTACGACCTATCCTTCGGACAAGATATTGAATTGGCCGGGTTTAGAGGAAGATAAAGGAACAGAAAAACCGATTCATAAGAAAGGAACTCATGGTAATGGGAAGCCTAGACGGAGTTCAGCTGATGGAAGGCTTAGTAATCACAGCTCTGAAGGAGGTAGAAAATCTGCATTTGATGAGTTGGGAGGCAATTCTGTTCAAAGCTGGAATAAATCGCCGCGGTTGAGAATAAAAGCTCCTAAAAGACCAGGAGAGACTATATCTAAAGGACATAAAAACTATGAGCTTATGTTGAATCTGCAACTAGGTATCAGGTATTCTGATCAGAAAAATTGTTGTTGTTTTCATGTATTTTGTTTACTCTCATATCATCTGTATGGTGTCGCTGAGCTTAATTATTGTGTGTTTGGTTCTGCAATAATAGAAATTGATTTTTAATGAACTGATTTTGTAATAGAGATTCTTGCTATTGCACCAATAAGAAAGAGATTCTCGCTAAAAGTGAGTTGAATGTTAAGTGATTTATGTCTGAATACATTTATATAAAAGGGGGTTGCACGATAAATTAGAGGCTAAAAATCAATTGTAGAGGCAAAAACTTCAAATTCTAGCTTAAATTAGAATCAATTCTGGAGGCCAAATCAATTTTATTCGATAATATCAAAACATATCAAAATCAATTCCACAACTTTTGGAATCAATTTTTCCTCCTCCAAAAGTGAAACCAAACATAGTCTTTTTTTTTTCCCTTCTCTTATTGTTTCTGAGTGATACTTGTATTGTACTAGTATTTTAACCTGTAAAGCCCACGTGGAGAATATATATTGAAATTTCCTAATGAAAACTCGGTAACTGTTGTAATTTGATAACATTAACATTGATAGCTATAAATGGTGCAATGATGAATTTCACATTGTAGCAAATAAATTTCCTTCCTTGATTCTAATTTTCACGGCACATTTACTAATTTCTTGTACCATTGGACAGACATTCCGTTGGAAGACCTGCTCCAAGTGCATCACTTGATTTGAAGTCTTCTGCATTTGATCCCAAAGAGAAAGTTTGGACTAGATTTCCACCAGAAGGATCCAAGCATACGCCACCTCACCCTTCATGTGAATTTAGATGGAAAGACTACTGTCCGGTAGTATTCAGGTATGCATAGGATTGAATGATCAGTTTTCTATTTATGTAAGCAAAGTTTTGGTCCTAACTAGGTGAACGAATCATGTTCTGTAACATAATCTACTAAGTGTTTACTTGTTGAGAGTAACGCTTGAAGTTTATGTTCAAAAAGTATTTTTCAGTTTTCGTGTTCTAAAATTTGTGTTCATTTTAAGTTGCAAACACGGGGATGAAAGGCTGAAGTAGTGAACAATTGTGATAGAGAGAAGATAGAGGCTAAAATAGGCAGAATGCATTTTCAGAAACAACGAAAACAATGTTTTAGTATTTTCGAAATTTCTAAAAAATCTAGATCTGTTTTCAGAAATTGTAAAAGAAACATTTTTCGAAGCCTCTTGTGCATGGTTGATATTGCAATTGTTTCATAACTTAGTATTACAAATAGTCTCTTACTGTGTTGGACTTTCATTTGTTTGTCTAAATTCACAGAATATGAGGGTGTATTTGATTGCATTTATATTTTCAGGGCTCTCAGAAAGCTGTTCAAAGTTGATCCTGCTGATTACATGATATCAATATGTGGGAATGAAGCTCTTCGGGAGCTCTCATCTCCTGGAAAAAGTGGAAGCTTTTTCTATTTGACGAACGATGACCGGTATATGATCAAAACCATGAAGAAAGCAGAAGTAAAAGTGAGTTCCATTTTCATTGGCTAGATATAATATAAGCCTTTTTTATCAATTCTCTCAACCCTTCACTTTATATGCTTACAAAAGAACAAAAATTACGATAGATTTAGAAATATAAAAGTTTGTCATAAATACGTATTAGTCCACTTTGATGTGATAGTTTTCACAAATATGCATTGCATTATAAAGATCATTAAATCATATTTCAATCCAAAAAATATTACATGATTGCAGGTTTTTCTGAAAATGCTTCCTGCTTATTATAAACACGTCCGGGCTTTTGAGAATACGCTGGTCACGAAGTTCTTCGGCCTCCATTGTGTAAAACTAACAGGAAGTGCACAAAAGAAGGTAATGTCTAGGTGTTTATAAACTTTTAATTTGGTATAAAAATAAAACTTTGATTCTTAATCAGTCACATTTCATTAAATTTCAGGTTCGCTTTGTCATAATGGGAAATATATTTTGTTCTCAATATGTCATCCATAGACGGTTTGACTTGAAAGGTTCGACGTTTGGTCGCACTACTGATAAACCGGAGGCAGAAGTAGAGCCAACAACAACACTTAAGGATCTTGACTTAAATTTTATATTTCGGTTGCAGAAGTCCTGGTTCGAAGAATTTTGCAGGTGAATTTCTTGCTTAGTGCTTGTTCTGCCACTATTTATGTGTGCCTGTAGCATGTAGGACACCACACTTTACAAGTTTTGGTTTTATTAAACATATTATTAGCTTCTTCGGACAAAAAGTTTGTTTTGAAGTTATTGATGGAAAGTCGATTGTAACTTGAGAGTAGGTGTATTACTAGTTACCTCTCTTAGTTGAATGACAGAAATGCAGATTTCACTAAAAAAGTTGCATCCTTGTATGAGCTGCAAAATTGCCTGCAATTTTTAGTCATATGATTAATGAACGAAAAATGACTTATGTGTCTTGATATTTAACATAAGAAATAGGGAAAACTGCACCAGAGGTCATTTAACTTACCTTAAAGTTTCAACTTTCAAACCGTGAACAAAATGTTGAACCTTTTTAAACGACAACAACGTTGAACCTTTAATGAATTCCCGTCCAAAACCGTGAACAAAATGACCTTATTTTAGCCTTCTTTTGAAATGTAATTTATTATTGTCTTTACTTTTGAACTTTGGTGCCACTTTGGCTTTACTTTGGAACTTCAGTGCCATTTTTGCTCGCATTCAATGAATGAATGAAAGGTTTCACTATAAAAAGATAAAGAACCTGTTTGAAACTTTATATATAAGTTAGAAGGCCTCCCTAATACAGTTTTTCCTATCAAATATTTGTAATTTAGTTTATCATATTTCTTTTTTTTTTTTTTTGACGTCGGAGATATTTCTAAACATGCCTTCATGCAGACAAGTTGATAGGGACTGTGACTTTCTTCAACATGAAAGAATTATGGATTACAGTATGTTGGTTGGTCTTCACTTTCGAGATACAAGTCCTGGCGGCAATGTTACACCTTGCGGTCGCAGTTCGGGAGCTCGCACCCCATCTGAATTCGATGATGGAGGCCCCCGACTTTCAGGAGTGGATGCAGATCATCTCATCATAGATCCTAGTCGGTATATTTTCAATCAACTCATCTTTGCAGTTTCAATTATTTTTTAGAACTTTAGTTTTCACTGTTTACACATGAATCCAATTAGACCAAACATTAAATATTTTCTGTTATTGAACTATTTCACTTTTACATTGTTTGATTCTCATACATTTTTCTGATTCATTTTTTGTATTGTGTTTTATGTTTCAGGTGGATTCAATTAGGTATAAACATGCCAGCGCGAGCCGAAATGGCTTTGCGGAAAAGCACATGTGAAAGTCCTCAGTTGGTTGGCGAACCAACCGGAGAGATGTATGATATTATCATCTTTTTTGGCATCATAGACATATTACAAGGCTATGATATTAGTAAAAAGCTTGAGCATGCTTACAAATCAATGCAATACGATCCAACTTCAATCTCAGCCGTTGATCCAAGGCTATACTCGAAACGCTTTCGCGATTTCATCTTCAGAGTTTTTGTAGAGGACACTTAA
Protein sequence

>MS.gene039654.t1

MSRELNGIVKAWESTVRKSATAKKRANSIFKPMSVANVDDEDDDDKQSSSSSSQEVSHVEKTMPNGDFYTGQWLDKFPHGQGKYLWIDGCMYVGEWIQGFTMGKGRFSWPSGATYEGEFKTCYMHGKGTYIGSSGDTYKGNWVMNLKNGDGNESYPNGDFYDGEWKKGVQNGHGRYQWKNGNHYIGQWRNGLFNGNGTMMWQNGNRYDGCWENGLPKGNGTFRWSDGSFYVGVWSKDPKEQSGTYYPSGSSDAHLEWDPQEVFTVELIECMICPCEDITTYPSDKILNWPGLEEDKGTEKPIHKKGTHGNGKPRRSSADGRLSNHSSEGGRKSAFDELGGNSVQSWNKSPRLRIKAPKRPGETISKGHKNYELMLNLQLGIRHSVGRPAPSASLDLKSSAFDPKEKVWTRFPPEGSKHTPPHPSCEFRWKDYCPVVFRALRKLFKVDPADYMISICGNEALRELSSPGKSGSFFYLTNDDRYMIKTMKKAEVKVFLKMLPAYYKHVRAFENTLVTKFFGLHCVKLTGSAQKKVRFVIMGNIFCSQYVIHRRFDLKGSTFGRTTDKPEAEVEPTTTLKDLDLNFIFRLQKSWFEEFCRQVDRDCDFLQHERIMDYSMLVGLHFRDTSPGGNVTPCGRSSGARTPSEFDDGGPRLSGVDADHLIIDPSINMPARAEMALRKSTCESPQLVGEPTGEMYDIIIFFGIIDILQGYDISKKLEHAYKSMQYDPTSISAVDPRLYSKRFRDFIFRVFVEDT