Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene040147.t1 | ABE80135.1 | 99.4 | 172 | 1 | 0 | 1 | 172 | 1 | 172 | 4.00E-94 | 354 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene040147.t1 | Q9XFK7 | 76.9 | 173 | 39 | 1 | 1 | 172 | 1 | 173 | 1.4e-76 | 287.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene040147.t1 | G7LDA2 | 99.4 | 172 | 1 | 0 | 1 | 172 | 2 | 173 | 2.9e-94 | 354.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene51913 | MS.gene040147 | PPI |
| MS.gene43049 | MS.gene040147 | PPI |
| MS.gene98252 | MS.gene040147 | PPI |
| MS.gene000759 | MS.gene040147 | PPI |
| MS.gene034467 | MS.gene040147 | PPI |
| MS.gene51950 | MS.gene040147 | PPI |
| MS.gene35397 | MS.gene040147 | PPI |
| MS.gene042580 | MS.gene040147 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene040147.t1 | MTR_8g106840 | 99.419 | 172 | 1 | 0 | 1 | 172 | 2 | 173 | 1.23e-125 | 350 |
| MS.gene040147.t1 | MTR_0020s0120 | 54.335 | 173 | 77 | 2 | 1 | 172 | 1 | 172 | 2.23e-64 | 195 |
| MS.gene040147.t1 | MTR_7g104460 | 54.118 | 170 | 77 | 1 | 4 | 172 | 5 | 174 | 1.71e-61 | 188 |
| MS.gene040147.t1 | MTR_0020s0120 | 53.179 | 173 | 72 | 3 | 1 | 172 | 1 | 165 | 4.72e-61 | 186 |
| MS.gene040147.t1 | MTR_2g086270 | 49.133 | 173 | 87 | 1 | 1 | 172 | 1 | 173 | 5.90e-57 | 176 |
| MS.gene040147.t1 | MTR_7g084970 | 50.000 | 172 | 84 | 2 | 2 | 172 | 3 | 173 | 4.34e-55 | 172 |
| MS.gene040147.t1 | MTR_6g033040 | 51.205 | 166 | 79 | 2 | 2 | 166 | 3 | 167 | 2.00e-54 | 170 |
| MS.gene040147.t1 | MTR_1g060190 | 48.466 | 163 | 82 | 2 | 2 | 162 | 3 | 165 | 2.92e-51 | 162 |
| MS.gene040147.t1 | MTR_7g006630 | 51.829 | 164 | 76 | 3 | 5 | 166 | 1 | 163 | 1.13e-47 | 153 |
| MS.gene040147.t1 | MTR_7g006690 | 51.515 | 165 | 77 | 3 | 4 | 166 | 5 | 168 | 3.90e-47 | 152 |
| MS.gene040147.t1 | MTR_7g085020 | 48.765 | 162 | 81 | 2 | 6 | 166 | 8 | 168 | 1.90e-46 | 150 |
| MS.gene040147.t1 | MTR_7g085040 | 46.626 | 163 | 81 | 4 | 5 | 166 | 6 | 163 | 7.72e-43 | 140 |
| MS.gene040147.t1 | MTR_5g078320 | 82.667 | 75 | 13 | 0 | 98 | 172 | 15 | 89 | 2.02e-39 | 129 |
| MS.gene040147.t1 | MTR_7g052830 | 85.294 | 34 | 5 | 0 | 67 | 100 | 1 | 34 | 1.55e-13 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene040147.t1 | AT1G18100 | 76.879 | 173 | 39 | 1 | 1 | 172 | 1 | 173 | 2.97e-99 | 283 |
| MS.gene040147.t1 | AT5G62040 | 48.851 | 174 | 87 | 2 | 1 | 172 | 1 | 174 | 2.74e-57 | 177 |
| MS.gene040147.t1 | AT2G27550 | 52.047 | 171 | 80 | 2 | 4 | 172 | 5 | 175 | 2.10e-55 | 172 |
| MS.gene040147.t1 | AT5G03840 | 46.154 | 169 | 90 | 1 | 5 | 172 | 9 | 177 | 9.53e-54 | 169 |
| MS.gene040147.t1 | AT4G20370 | 53.086 | 162 | 74 | 2 | 6 | 166 | 7 | 167 | 6.38e-53 | 166 |
| MS.gene040147.t1 | AT1G65480 | 50.617 | 162 | 78 | 2 | 6 | 166 | 7 | 167 | 1.58e-52 | 165 |
| MS.gene040147.t1 | AT1G65480 | 50.617 | 162 | 78 | 2 | 6 | 166 | 51 | 211 | 2.77e-52 | 166 |
Find 58 sgRNAs with CRISPR-Local
Find 119 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTAGCCTGAGGCTCCTTC+TGG | 0.225327 | 4.4:-576768 | None:intergenic |
| CTCACGCATGCTTGGTTCAC+TGG | 0.248883 | 4.4:-575122 | None:intergenic |
| CAACCATTTGTGACATGTTT+AGG | 0.256839 | 4.4:-574900 | None:intergenic |
| TCACTGGGGCTTGGTGCATC+TGG | 0.305201 | 4.4:-575106 | None:intergenic |
| GGCTGCCTCGGTTGATCCTT+TGG | 0.316826 | 4.4:+574806 | MS.gene040147:CDS |
| CGCTTTGGGTTTGTTCCTCC+AGG | 0.320975 | 4.4:-575318 | None:intergenic |
| GGCTGCTCAACCATTCCTAT+TGG | 0.334282 | 4.4:-576661 | None:intergenic |
| TGGATACCAACCGGTGGTTT+TGG | 0.353965 | 4.4:-576604 | None:intergenic |
| ATGCTTGGTTCACTGGGGCT+TGG | 0.362295 | 4.4:-575115 | None:intergenic |
| AGGATCGTGGTTGACATTCC+TGG | 0.370693 | 4.4:+575300 | MS.gene040147:intron |
| CTTAGCCTGAGGCTCCTTCT+GGG | 0.376302 | 4.4:-576767 | None:intergenic |
| AAGGAGATTCTTCCATATAT+AGG | 0.387575 | 4.4:+576580 | MS.gene040147:CDS |
| CCACCCAAGGTCACTCTCAC+TGG | 0.397435 | 4.4:+574951 | MS.gene040147:CDS |
| TGGTATCCACCGATACATAT+TGG | 0.404436 | 4.4:+576618 | MS.gene040147:CDS |
| TCACGCATGCTTGGTTCACT+GGG | 0.406751 | 4.4:-575121 | None:intergenic |
| TTTGAGCAGAAGGGACCAAT+AGG | 0.418830 | 4.4:+576646 | MS.gene040147:CDS |
| TTGGTGGTTGGTCGTGTGAT+TGG | 0.419912 | 4.4:+574825 | MS.gene040147:CDS |
| CCAGTGAGAGTGACCTTGGG+TGG | 0.438911 | 4.4:-574951 | None:intergenic |
| GTTGGCATGTCTGTTTACTT+TGG | 0.474660 | 4.4:+574876 | MS.gene040147:CDS |
| GCATGCGTGAGCTGATACAC+TGG | 0.479766 | 4.4:+575134 | MS.gene040147:CDS |
| GGTCCTAAACATGTCACAAA+TGG | 0.480505 | 4.4:+574897 | MS.gene040147:CDS |
| TCGGTTGATCCTTTGGTGGT+TGG | 0.485892 | 4.4:+574813 | MS.gene040147:CDS |
| GACATGTTCATTCCATCTGT+TGG | 0.499828 | 4.4:+574858 | MS.gene040147:CDS |
| GTTTCCAGTGAGAGTGACCT+TGG | 0.510114 | 4.4:-574955 | None:intergenic |
| TGTATCAGCTCACGCATGCT+TGG | 0.510689 | 4.4:-575130 | None:intergenic |
| AGAAGGAGCCTCAGGCTAAG+AGG | 0.523160 | 4.4:+576770 | MS.gene040147:CDS |
| TTAAAGTAGACTGTAGCTAC+AGG | 0.523873 | 4.4:-576742 | None:intergenic |
| TGCCTCGGTTGATCCTTTGG+TGG | 0.525528 | 4.4:+574809 | MS.gene040147:CDS |
| ATGTATCGGTGGATACCAAC+CGG | 0.527511 | 4.4:-576613 | None:intergenic |
| TAACTCCCAGAAGGAGCCTC+AGG | 0.529044 | 4.4:+576762 | MS.gene040147:CDS |
| GGTCACTCTCACTGGAAACA+TGG | 0.545850 | 4.4:+574959 | MS.gene040147:CDS |
| TTTGCAAGTCAATTGAACCT+TGG | 0.546466 | 4.4:+576715 | MS.gene040147:CDS |
| GGTGGGTTGATAGCCATGGA+TGG | 0.548514 | 4.4:-574933 | None:intergenic |
| CAGTGAGAGTGACCTTGGGT+GGG | 0.551987 | 4.4:-574950 | None:intergenic |
| TTTCCAGTGAGAGTGACCTT+GGG | 0.557115 | 4.4:-574954 | None:intergenic |
| CTTGGGTGGGTTGATAGCCA+TGG | 0.562286 | 4.4:-574937 | None:intergenic |
| GGTGATCATGATGGCTGCCT+CGG | 0.563998 | 4.4:+574794 | None:intergenic |
| TAAACAGACATGCCAACAGA+TGG | 0.565070 | 4.4:-574870 | None:intergenic |
| CAAACAAAACCAATATGTAT+CGG | 0.565284 | 4.4:-576627 | None:intergenic |
| AGTGTTGAAACTGACTCTAC+TGG | 0.584655 | 4.4:-576686 | None:intergenic |
| ATCACACGACCAACCACCAA+AGG | 0.596985 | 4.4:-574822 | None:intergenic |
| TTGTGACATAAAGCCATCCA+TGG | 0.620992 | 4.4:+574920 | MS.gene040147:CDS |
| ATTGGCTGACCAGAGTGTAG+AGG | 0.622213 | 4.4:-574986 | None:intergenic |
| ACAAAACCAATATGTATCGG+TGG | 0.631832 | 4.4:-576624 | None:intergenic |
| CATGGATAACCTCTACACTC+TGG | 0.637951 | 4.4:+574977 | MS.gene040147:CDS |
| CATGGCTATCAACCCACCCA+AGG | 0.643435 | 4.4:+574938 | MS.gene040147:CDS |
| AGTCTACTTTAACTCCCAGA+AGG | 0.644955 | 4.4:+576753 | MS.gene040147:CDS |
| GCAGAAGGGACCAATAGGAA+TGG | 0.646075 | 4.4:+576651 | MS.gene040147:CDS |
| CACGCATGCTTGGTTCACTG+GGG | 0.654510 | 4.4:-575120 | None:intergenic |
| ATAGGACCAAAACCACCGGT+TGG | 0.655362 | 4.4:+576598 | MS.gene040147:CDS |
| ATATATAGGACCAAAACCAC+CGG | 0.662745 | 4.4:+576594 | MS.gene040147:CDS |
| GTTCAACGCCTCTTAGCCTG+AGG | 0.669979 | 4.4:-576778 | None:intergenic |
| TTGAAACTGACTCTACTGGT+TGG | 0.690180 | 4.4:-576682 | None:intergenic |
| GGAGGAACAAACCCAAAGCG+AGG | 0.693274 | 4.4:+575321 | MS.gene040147:CDS |
| AACCACCAAAGGATCAACCG+AGG | 0.707404 | 4.4:-574811 | None:intergenic |
| ATCGTGGTTGACATTCCTGG+AGG | 0.727325 | 4.4:+575303 | MS.gene040147:CDS |
| TATCGGTGGATACCAACCGG+TGG | 0.737473 | 4.4:-576610 | None:intergenic |
| CTGTAGCTACAGGAAGACCA+AGG | 0.739753 | 4.4:-576732 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTCATATCAAAATAAAAAT+AGG | - | chr4.4:575252-575271 | None:intergenic | 10.0% |
| !! | TTCATATCAAAATAAAAATA+GGG | - | chr4.4:575251-575270 | None:intergenic | 10.0% |
| !!! | TAAAAGAAATAATTTTTGAT+CGG | + | chr4.4:575350-575369 | MS.gene040147:intron | 10.0% |
| !!! | TGAGTTTATATAATTTTTTT+TGG | + | chr4.4:575461-575480 | MS.gene040147:intron | 10.0% |
| !! | AAACTAAGAAAAATAATTTG+TGG | - | chr4.4:575827-575846 | None:intergenic | 15.0% |
| !! | AAATTATAGAGTATGTATAA+AGG | - | chr4.4:576489-576508 | None:intergenic | 15.0% |
| !! | TTTACGAAAAAATAAATGTT+TGG | - | chr4.4:575938-575957 | None:intergenic | 15.0% |
| !! | ATCAAAATAAAAATAGGGAA+GGG | - | chr4.4:575246-575265 | None:intergenic | 20.0% |
| !! | TATCAAAATAAAAATAGGGA+AGG | - | chr4.4:575247-575266 | None:intergenic | 20.0% |
| !! | TGCATATAAAATATTGCTAA+AGG | + | chr4.4:576205-576224 | MS.gene040147:intron | 20.0% |
| !!! | AACCTTAATTAGTTTTTCTT+TGG | + | chr4.4:576547-576566 | MS.gene040147:intron | 20.0% |
| !!! | ACATTTCTAAAATCAACAAT+CGG | - | chr4.4:575561-575580 | None:intergenic | 20.0% |
| !!! | CAAAAAAGTATGAAGTATTT+GGG | - | chr4.4:576003-576022 | None:intergenic | 20.0% |
| !!! | TCAAAAAAGTATGAAGTATT+TGG | - | chr4.4:576004-576023 | None:intergenic | 20.0% |
| !!! | TGATTTTAGAAATGTTTGTT+TGG | + | chr4.4:575566-575585 | MS.gene040147:intron | 20.0% |
| !!! | TTGTGATATTTTTTACAAAG+AGG | - | chr4.4:575651-575670 | None:intergenic | 20.0% |
| !!! | TTGTTTTGTAATTTTTAGCA+AGG | - | chr4.4:576312-576331 | None:intergenic | 20.0% |
| !!! | TTGTTTTTTATATTGAATCC+TGG | + | chr4.4:575736-575755 | MS.gene040147:intron | 20.0% |
| !!! | TTTTCTTCTTATTATGTACA+CGG | + | chr4.4:575390-575409 | MS.gene040147:intron | 20.0% |
| ! | CAAACAAAACCAATATGTAT+CGG | - | chr4.4:576630-576649 | None:intergenic | 25.0% |
| ! | CACCAAAGAAAAACTAATTA+AGG | - | chr4.4:576552-576571 | None:intergenic | 25.0% |
| ! | TCAAAATAAAAATAGGGAAG+GGG | - | chr4.4:575245-575264 | None:intergenic | 25.0% |
| ! | TCAAAGAGATACATATTGAT+TGG | - | chr4.4:575007-575026 | None:intergenic | 25.0% |
| !! | AACATGCATGAATCTATTTT+CGG | + | chr4.4:575608-575627 | MS.gene040147:intron | 25.0% |
| !! | TTTTATATATACCTCGCTTT+GGG | - | chr4.4:575335-575354 | None:intergenic | 25.0% |
| !!! | ATTGTTCTCTTTAAAACAAG+TGG | - | chr4.4:576163-576182 | None:intergenic | 25.0% |
| !!! | CTTCAAGTTTCCATTTTTTA+AGG | + | chr4.4:575280-575299 | MS.gene040147:intron | 25.0% |
| !!! | GTATATGATCAAAGTTTTGA+TGG | + | chr4.4:575043-575062 | MS.gene040147:intron | 25.0% |
| !!! | TTTTTTTGGATGACATACAA+TGG | + | chr4.4:575475-575494 | MS.gene040147:intron | 25.0% |
| AAGGAGATTCTTCCATATAT+AGG | + | chr4.4:576580-576599 | MS.gene040147:CDS | 30.0% | |
| AGTGCAAAAACTAGTTAACT+AGG | - | chr4.4:575890-575909 | None:intergenic | 30.0% | |
| CGTTTGTTTGTGTAAATCAA+CGG | + | chr4.4:576422-576441 | MS.gene040147:intron | 30.0% | |
| ! | CTTTTATATATACCTCGCTT+TGG | - | chr4.4:575336-575355 | None:intergenic | 30.0% |
| ! | GTTGATTTACACAAACAAAC+GGG | - | chr4.4:576423-576442 | None:intergenic | 30.0% |
| !! | AGATACACCAATTTTGAAGA+CGG | + | chr4.4:576046-576065 | MS.gene040147:intron | 30.0% |
| !! | CGTTGATTTACACAAACAAA+CGG | - | chr4.4:576424-576443 | None:intergenic | 30.0% |
| !!! | AGTTAACTAGTTTTTGCACT+CGG | + | chr4.4:575890-575909 | MS.gene040147:intron | 30.0% |
| !!! | TAACAATTTTTTGTGCATGC+AGG | + | chr4.4:575072-575091 | MS.gene040147:intron | 30.0% |
| !!! | TTTCCATTTTTTAAGGATCG+TGG | + | chr4.4:575287-575306 | MS.gene040147:intron | 30.0% |
| ACAAAACCAATATGTATCGG+TGG | - | chr4.4:576627-576646 | None:intergenic | 35.0% | |
| ACGGGCATGATTTATGTTAA+AGG | - | chr4.4:576405-576424 | None:intergenic | 35.0% | |
| ATATATAGGACCAAAACCAC+CGG | + | chr4.4:576594-576613 | MS.gene040147:CDS | 35.0% | |
| CAACCACGATCCTTAAAAAA+TGG | - | chr4.4:575293-575312 | None:intergenic | 35.0% | |
| CAACCATTTGTGACATGTTT+AGG | - | chr4.4:574903-574922 | None:intergenic | 35.0% | |
| TAAAATCAACAATCGGCAAG+TGG | - | chr4.4:575554-575573 | None:intergenic | 35.0% | |
| TCACTTATCAAGATGTTGCA+TGG | + | chr4.4:575437-575456 | MS.gene040147:intron | 35.0% | |
| TTAAAGTAGACTGTAGCTAC+AGG | - | chr4.4:576745-576764 | None:intergenic | 35.0% | |
| TTTGCAAGTCAATTGAACCT+TGG | + | chr4.4:576715-576734 | MS.gene040147:CDS | 35.0% | |
| !!! | ATTGGTTTTGTTTGAGCAGA+AGG | + | chr4.4:576636-576655 | MS.gene040147:CDS | 35.0% |
| !!! | TAGTTTTTCTTTGGTGTTGC+AGG | + | chr4.4:576556-576575 | MS.gene040147:intron | 35.0% |
| !!! | TTGGTTTTGTTTGAGCAGAA+GGG | + | chr4.4:576637-576656 | MS.gene040147:CDS | 35.0% |
| AGTCTACTTTAACTCCCAGA+AGG | + | chr4.4:576753-576772 | MS.gene040147:CDS | 40.0% | |
| AGTGTGAGAAGCTCATTTGT+TGG | - | chr4.4:575717-575736 | None:intergenic | 40.0% | |
| CAAGGAACCGTCTTCAAAAT+TGG | - | chr4.4:576056-576075 | None:intergenic | 40.0% | |
| CAAGGATGTGATGTGATGTT+TGG | - | chr4.4:575679-575698 | None:intergenic | 40.0% | |
| GACATGTTCATTCCATCTGT+TGG | + | chr4.4:574858-574877 | MS.gene040147:CDS | 40.0% | |
| GGTCCTAAACATGTCACAAA+TGG | + | chr4.4:574897-574916 | MS.gene040147:CDS | 40.0% | |
| GTTGGCATGTCTGTTTACTT+TGG | + | chr4.4:574876-574895 | MS.gene040147:CDS | 40.0% | |
| TAAACAGACATGCCAACAGA+TGG | - | chr4.4:574873-574892 | None:intergenic | 40.0% | |
| TGGAAGACAACATTGAATCC+AGG | - | chr4.4:575757-575776 | None:intergenic | 40.0% | |
| TGGTATCCACCGATACATAT+TGG | + | chr4.4:576618-576637 | MS.gene040147:CDS | 40.0% | |
| TTGTGACATAAAGCCATCCA+TGG | + | chr4.4:574920-574939 | MS.gene040147:CDS | 40.0% | |
| ! | AGTGTTGAAACTGACTCTAC+TGG | - | chr4.4:576689-576708 | None:intergenic | 40.0% |
| ! | CATTTGTTGGATTGAAGCAG+TGG | - | chr4.4:575704-575723 | None:intergenic | 40.0% |
| ! | TTGAAACTGACTCTACTGGT+TGG | - | chr4.4:576685-576704 | None:intergenic | 40.0% |
| !! | TTTCTTTGGTGTTGCAGGAA+AGG | + | chr4.4:576561-576580 | MS.gene040147:intron | 40.0% |
| !!! | GGTGGTTTTGGTCCTATATA+TGG | - | chr4.4:576595-576614 | None:intergenic | 40.0% |
| ACGTTTCCTGTGTGACACAT+TGG | - | chr4.4:576139-576158 | None:intergenic | 45.0% | |
| AGATCATCACACGTAGCATG+TGG | + | chr4.4:576076-576095 | MS.gene040147:intron | 45.0% | |
| CATGGATAACCTCTACACTC+TGG | + | chr4.4:574977-574996 | MS.gene040147:CDS | 45.0% | |
| TCATGACCAATGTGTCACAC+AGG | + | chr4.4:576130-576149 | MS.gene040147:intron | 45.0% | |
| TGCTACGTGTGATGATCTCA+AGG | - | chr4.4:576074-576093 | None:intergenic | 45.0% | |
| TGGATTGAAGCAGTGGAACA+AGG | - | chr4.4:575697-575716 | None:intergenic | 45.0% | |
| TTTCCAGTGAGAGTGACCTT+GGG | - | chr4.4:574957-574976 | None:intergenic | 45.0% | |
| TTTGAGCAGAAGGGACCAAT+AGG | + | chr4.4:576646-576665 | MS.gene040147:CDS | 45.0% | |
| ! | ATGTATCGGTGGATACCAAC+CGG | - | chr4.4:576616-576635 | None:intergenic | 45.0% |
| ! | TGGCTTGCATGTCACAAAAG+TGG | + | chr4.4:576096-576115 | MS.gene040147:intron | 45.0% |
| AACCACCAAAGGATCAACCG+AGG | - | chr4.4:574814-574833 | None:intergenic | 50.0% | |
| AGGATCGTGGTTGACATTCC+TGG | + | chr4.4:575300-575319 | MS.gene040147:intron | 50.0% | |
| ATAGGACCAAAACCACCGGT+TGG | + | chr4.4:576598-576617 | MS.gene040147:CDS | 50.0% | |
| ATCACACGACCAACCACCAA+AGG | - | chr4.4:574825-574844 | None:intergenic | 50.0% | |
| ATCGTGGTTGACATTCCTGG+AGG | + | chr4.4:575303-575322 | MS.gene040147:CDS | 50.0% | |
| ATTGGCTGACCAGAGTGTAG+AGG | - | chr4.4:574989-575008 | None:intergenic | 50.0% | |
| CTGTAGCTACAGGAAGACCA+AGG | - | chr4.4:576735-576754 | None:intergenic | 50.0% | |
| GAAGCACGCACGAATAGACA+TGG | - | chr4.4:576449-576468 | None:intergenic | 50.0% | |
| GCAGAAGGGACCAATAGGAA+TGG | + | chr4.4:576651-576670 | MS.gene040147:CDS | 50.0% | |
| GGCTGCTCAACCATTCCTAT+TGG | - | chr4.4:576664-576683 | None:intergenic | 50.0% | |
| GGTCACTCTCACTGGAAACA+TGG | + | chr4.4:574959-574978 | MS.gene040147:CDS | 50.0% | |
| GTTTCCAGTGAGAGTGACCT+TGG | - | chr4.4:574958-574977 | None:intergenic | 50.0% | |
| TCACGCATGCTTGGTTCACT+GGG | - | chr4.4:575124-575143 | None:intergenic | 50.0% | |
| TGTATCAGCTCACGCATGCT+TGG | - | chr4.4:575133-575152 | None:intergenic | 50.0% | |
| ! | TCGGTTGATCCTTTGGTGGT+TGG | + | chr4.4:574813-574832 | MS.gene040147:CDS | 50.0% |
| ! | TGGATACCAACCGGTGGTTT+TGG | - | chr4.4:576607-576626 | None:intergenic | 50.0% |
| ! | TTGGTGGTTGGTCGTGTGAT+TGG | + | chr4.4:574825-574844 | MS.gene040147:CDS | 50.0% |
| AGAAGGAGCCTCAGGCTAAG+AGG | + | chr4.4:576770-576789 | MS.gene040147:CDS | 55.0% | |
| ATGCTTGGTTCACTGGGGCT+TGG | - | chr4.4:575118-575137 | None:intergenic | 55.0% | |
| CACGCATGCTTGGTTCACTG+GGG | - | chr4.4:575123-575142 | None:intergenic | 55.0% | |
| CAGTGAGAGTGACCTTGGGT+GGG | - | chr4.4:574953-574972 | None:intergenic | 55.0% | |
| CATGCAGCACAGGTGGAAGA+TGG | - | chr4.4:575777-575796 | None:intergenic | 55.0% | |
| CATGGCTATCAACCCACCCA+AGG | + | chr4.4:574938-574957 | MS.gene040147:CDS | 55.0% | |
| CTCACGCATGCTTGGTTCAC+TGG | - | chr4.4:575125-575144 | None:intergenic | 55.0% | |
| CTTAGCCTGAGGCTCCTTCT+GGG | - | chr4.4:576770-576789 | None:intergenic | 55.0% | |
| GCATGCGTGAGCTGATACAC+TGG | + | chr4.4:575134-575153 | MS.gene040147:CDS | 55.0% | |
| GGAGGAACAAACCCAAAGCG+AGG | + | chr4.4:575321-575340 | MS.gene040147:CDS | 55.0% | |
| TAACTCCCAGAAGGAGCCTC+AGG | + | chr4.4:576762-576781 | MS.gene040147:CDS | 55.0% | |
| TATCGGTGGATACCAACCGG+TGG | - | chr4.4:576613-576632 | None:intergenic | 55.0% | |
| TCTTAGCCTGAGGCTCCTTC+TGG | - | chr4.4:576771-576790 | None:intergenic | 55.0% | |
| TCTTCCACCTGTGCTGCATG+TGG | + | chr4.4:575777-575796 | MS.gene040147:intron | 55.0% | |
| TGCCTCGGTTGATCCTTTGG+TGG | + | chr4.4:574809-574828 | MS.gene040147:CDS | 55.0% | |
| ! | CGCTTTGGGTTTGTTCCTCC+AGG | - | chr4.4:575321-575340 | None:intergenic | 55.0% |
| !! | CTTGGGTGGGTTGATAGCCA+TGG | - | chr4.4:574940-574959 | None:intergenic | 55.0% |
| !! | GGTGGGTTGATAGCCATGGA+TGG | - | chr4.4:574936-574955 | None:intergenic | 55.0% |
| ATAGCCGCCACATGCAGCAC+AGG | - | chr4.4:575787-575806 | None:intergenic | 60.0% | |
| CCACCCAAGGTCACTCTCAC+TGG | + | chr4.4:574951-574970 | MS.gene040147:CDS | 60.0% | |
| CCAGTGAGAGTGACCTTGGG+TGG | - | chr4.4:574954-574973 | None:intergenic | 60.0% | |
| GGCTGCCTCGGTTGATCCTT+TGG | + | chr4.4:574806-574825 | MS.gene040147:CDS | 60.0% | |
| TCCACCTGTGCTGCATGTGG+CGG | + | chr4.4:575780-575799 | MS.gene040147:intron | 60.0% | |
| !! | TCACTGGGGCTTGGTGCATC+TGG | - | chr4.4:575109-575128 | None:intergenic | 60.0% |
| GCCGCCACATGCAGCACAGG+TGG | - | chr4.4:575784-575803 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 574804 | 576798 | 574804 | ID=MS.gene040147 |
| chr4.4 | mRNA | 574804 | 576798 | 574804 | ID=MS.gene040147.t1;Parent=MS.gene040147 |
| chr4.4 | exon | 574804 | 574998 | 574804 | ID=MS.gene040147.t1.exon1;Parent=MS.gene040147.t1 |
| chr4.4 | CDS | 574804 | 574998 | 574804 | ID=cds.MS.gene040147.t1;Parent=MS.gene040147.t1 |
| chr4.4 | exon | 575094 | 575155 | 575094 | ID=MS.gene040147.t1.exon2;Parent=MS.gene040147.t1 |
| chr4.4 | CDS | 575094 | 575155 | 575094 | ID=cds.MS.gene040147.t1;Parent=MS.gene040147.t1 |
| chr4.4 | exon | 575302 | 575342 | 575302 | ID=MS.gene040147.t1.exon3;Parent=MS.gene040147.t1 |
| chr4.4 | CDS | 575302 | 575342 | 575302 | ID=cds.MS.gene040147.t1;Parent=MS.gene040147.t1 |
| chr4.4 | exon | 576578 | 576798 | 576578 | ID=MS.gene040147.t1.exon4;Parent=MS.gene040147.t1 |
| chr4.4 | CDS | 576578 | 576798 | 576578 | ID=cds.MS.gene040147.t1;Parent=MS.gene040147.t1 |
| Gene Sequence |
| Protein sequence |
