Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43049.t1 | XP_003596800.1 | 98.8 | 173 | 2 | 0 | 1 | 173 | 1 | 173 | 1.00E-94 | 355.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43049.t1 | Q9XH43 | 78.8 | 170 | 35 | 1 | 5 | 173 | 6 | 175 | 2.6e-78 | 292.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43049.t1 | G7ITR2 | 98.8 | 173 | 2 | 0 | 1 | 173 | 1 | 173 | 7.6e-95 | 355.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene43049 | MS.gene51913 | PPI |
| MS.gene43049 | MS.gene040147 | PPI |
| MS.gene43049 | MS.gene95893 | PPI |
| MS.gene51913 | MS.gene43049 | PPI |
| MS.gene43049 | MS.gene51950 | PPI |
| MS.gene62616 | MS.gene43049 | PPI |
| MS.gene43049 | MS.gene042580 | PPI |
| MS.gene94652 | MS.gene43049 | PPI |
| MS.gene000759 | MS.gene43049 | PPI |
| MS.gene43049 | MS.gene98252 | PPI |
| MS.gene43049 | MS.gene93778 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43049.t1 | MTR_2g086270 | 98.844 | 173 | 2 | 0 | 1 | 173 | 1 | 173 | 7.73e-128 | 356 |
| MS.gene43049.t1 | MTR_7g104460 | 76.023 | 171 | 41 | 0 | 3 | 173 | 4 | 174 | 2.92e-101 | 289 |
| MS.gene43049.t1 | MTR_0020s0120 | 66.474 | 173 | 57 | 1 | 1 | 173 | 1 | 172 | 5.52e-86 | 250 |
| MS.gene43049.t1 | MTR_1g060190 | 66.871 | 163 | 53 | 1 | 2 | 163 | 3 | 165 | 1.56e-81 | 239 |
| MS.gene43049.t1 | MTR_0020s0120 | 63.584 | 173 | 55 | 2 | 1 | 173 | 1 | 165 | 3.61e-79 | 233 |
| MS.gene43049.t1 | MTR_7g084970 | 54.118 | 170 | 77 | 1 | 4 | 173 | 5 | 173 | 7.59e-67 | 202 |
| MS.gene43049.t1 | MTR_6g033040 | 52.941 | 170 | 79 | 1 | 4 | 173 | 5 | 173 | 1.47e-62 | 191 |
| MS.gene43049.t1 | MTR_7g085020 | 55.357 | 168 | 74 | 1 | 6 | 173 | 8 | 174 | 2.00e-61 | 188 |
| MS.gene43049.t1 | MTR_7g006690 | 49.708 | 171 | 84 | 2 | 4 | 173 | 5 | 174 | 5.32e-59 | 182 |
| MS.gene43049.t1 | MTR_8g106840 | 49.711 | 173 | 86 | 1 | 1 | 173 | 2 | 173 | 3.14e-58 | 180 |
| MS.gene43049.t1 | MTR_7g006630 | 49.704 | 169 | 83 | 2 | 6 | 173 | 2 | 169 | 2.15e-57 | 177 |
| MS.gene43049.t1 | MTR_7g085040 | 49.405 | 168 | 80 | 3 | 6 | 173 | 7 | 169 | 2.31e-53 | 167 |
| MS.gene43049.t1 | MTR_5g078320 | 38.356 | 73 | 45 | 0 | 100 | 172 | 16 | 88 | 2.21e-13 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43049.t1 | AT2G27550 | 76.744 | 172 | 39 | 1 | 3 | 173 | 4 | 175 | 5.37e-100 | 286 |
| MS.gene43049.t1 | AT5G03840 | 73.214 | 168 | 45 | 0 | 6 | 173 | 10 | 177 | 1.54e-93 | 269 |
| MS.gene43049.t1 | AT5G62040 | 58.046 | 174 | 72 | 1 | 1 | 173 | 1 | 174 | 3.66e-74 | 220 |
| MS.gene43049.t1 | AT1G65480 | 54.598 | 174 | 77 | 2 | 1 | 173 | 1 | 173 | 7.35e-65 | 197 |
| MS.gene43049.t1 | AT1G65480 | 54.598 | 174 | 77 | 2 | 1 | 173 | 45 | 217 | 1.38e-64 | 197 |
| MS.gene43049.t1 | AT4G20370 | 53.448 | 174 | 79 | 2 | 1 | 173 | 1 | 173 | 4.93e-61 | 187 |
| MS.gene43049.t1 | AT1G18100 | 50.575 | 174 | 84 | 2 | 1 | 173 | 1 | 173 | 1.11e-57 | 178 |
Find 41 sgRNAs with CRISPR-Local
Find 129 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCACCATGAATCTGAACTTT+AGG | 0.259268 | 2.4:-13897322 | None:intergenic |
| GCAACAGATCCTCTTGCTAT+TGG | 0.264347 | 2.4:+13897181 | MS.gene43049:CDS |
| AATCTGAACTTTAGGTTTAG+TGG | 0.315784 | 2.4:-13897314 | None:intergenic |
| GTAAACTTGCTTAGTGTTGT+AGG | 0.332443 | 2.4:-13897260 | None:intergenic |
| CAACAGATCCTCTTGCTATT+GGG | 0.339091 | 2.4:+13897182 | MS.gene43049:CDS |
| CTTGCTATTGGGAGAGTGAT+TGG | 0.342940 | 2.4:+13897193 | MS.gene43049:CDS |
| AACCTATGGATTCCTATGTT+TGG | 0.370955 | 2.4:-13899152 | None:intergenic |
| TCACTAGGGCCAGGGACATC+TGG | 0.386750 | 2.4:-13897534 | None:intergenic |
| AAACCTAAAGTTCAGATTCA+TGG | 0.412345 | 2.4:+13897319 | MS.gene43049:CDS |
| TATGAGATCTTTCTTCACTT+TGG | 0.453943 | 2.4:+13897348 | MS.gene43049:CDS |
| GGCACAACTGATGCTACATT+TGG | 0.461577 | 2.4:+13898990 | MS.gene43049:CDS |
| GGTTTAGTGGTAACTGAGGA+AGG | 0.482769 | 2.4:-13897301 | None:intergenic |
| TGCGCTTCTGCTTGTAAAGA+AGG | 0.483125 | 2.4:-13899181 | None:intergenic |
| TCCCTCAGGTACGGATCACT+AGG | 0.483821 | 2.4:-13897549 | None:intergenic |
| AAAGAAGGAACACAAACCTA+TGG | 0.532641 | 2.4:-13899166 | None:intergenic |
| TGATGAAAATACCAACATCA+AGG | 0.533106 | 2.4:+13899213 | MS.gene43049:CDS |
| AGGTACGGATCACTAGGGCC+AGG | 0.555831 | 2.4:-13897543 | None:intergenic |
| GAAATGCCACGTCCAAACAT+AGG | 0.556488 | 2.4:+13899140 | MS.gene43049:CDS |
| ACCAGTGCAAGTGTTCCCTC+AGG | 0.564091 | 2.4:-13897563 | None:intergenic |
| TGGATTCCTATGTTTGGACG+TGG | 0.564287 | 2.4:-13899146 | None:intergenic |
| TGCAAGTGTTCCCTCAGGTA+CGG | 0.564666 | 2.4:-13897558 | None:intergenic |
| AATGTAGCATCAGTTGTGCC+TGG | 0.566122 | 2.4:-13898987 | None:intergenic |
| ACCTGAGGGAACACTTGCAC+TGG | 0.569843 | 2.4:+13897562 | MS.gene43049:CDS |
| CAATGACCTCGGGCCTCCTG+TGG | 0.580778 | 2.4:+13899268 | MS.gene43049:CDS |
| AGGATCTGTTGCAATACTCA+TGG | 0.588182 | 2.4:-13897170 | None:intergenic |
| CCCTAGTGATCCGTACCTGA+GGG | 0.588627 | 2.4:+13897548 | MS.gene43049:CDS |
| ATGACAGATCCAGATGTCCC+TGG | 0.589097 | 2.4:+13897525 | MS.gene43049:CDS |
| GATGAAAATACCAACATCAA+GGG | 0.592305 | 2.4:+13899214 | MS.gene43049:CDS |
| TTGCACAAGACAATGACCTC+GGG | 0.602430 | 2.4:+13899258 | MS.gene43049:CDS |
| ATCACTCTCCCAATAGCAAG+AGG | 0.607444 | 2.4:-13897190 | None:intergenic |
| CAGCAGCCACAGGAGGCCCG+AGG | 0.611106 | 2.4:-13899274 | None:intergenic |
| GCCCTAGTGATCCGTACCTG+AGG | 0.613608 | 2.4:+13897547 | MS.gene43049:CDS |
| TTAAAGAGATCCCTTGATGT+TGG | 0.626156 | 2.4:-13899224 | None:intergenic |
| GGTACGGATCACTAGGGCCA+GGG | 0.631293 | 2.4:-13897542 | None:intergenic |
| AACACTAAGCAAGTTTACAA+TGG | 0.639730 | 2.4:+13897265 | MS.gene43049:CDS |
| TTTAGGTTTAGTGGTAACTG+AGG | 0.644885 | 2.4:-13897305 | None:intergenic |
| TTTGCACAAGACAATGACCT+CGG | 0.646965 | 2.4:+13899257 | MS.gene43049:CDS |
| CCCTCAGGTACGGATCACTA+GGG | 0.654397 | 2.4:-13897548 | None:intergenic |
| GTCCAAACATAGGAATCCAT+AGG | 0.668902 | 2.4:+13899150 | MS.gene43049:CDS |
| AGGATAGTCACAGATATACC+AGG | 0.670510 | 2.4:+13898969 | MS.gene43049:intron |
| CCTAAAGTTCAGATTCATGG+TGG | 0.696957 | 2.4:+13897322 | MS.gene43049:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTATTTAAAAATATAT+TGG | + | chr2.4:13898046-13898065 | MS.gene43049:intron | 0.0% |
| !! | AATAATTAGAAAAGAATTAA+AGG | + | chr2.4:13897888-13897907 | MS.gene43049:intron | 10.0% |
| !! | ATAATTTAAGTAATATAGAT+AGG | + | chr2.4:13897807-13897826 | MS.gene43049:intron | 10.0% |
| !! | ATTCAAATTTACTAAAAATA+AGG | + | chr2.4:13898688-13898707 | MS.gene43049:intron | 10.0% |
| !! | TTCAAATTTACTAAAAATAA+GGG | + | chr2.4:13898689-13898708 | MS.gene43049:intron | 10.0% |
| !!! | AAGTATTAATTTTTGTAAAT+TGG | + | chr2.4:13898173-13898192 | MS.gene43049:intron | 10.0% |
| !!! | AGTATTAATTTTTGTAAATT+GGG | + | chr2.4:13898174-13898193 | MS.gene43049:intron | 10.0% |
| !!! | ATTTTTTATTTATATTAAGC+TGG | + | chr2.4:13898906-13898925 | MS.gene43049:intron | 10.0% |
| !!! | TTCAACTTTTTATTAAAAAA+TGG | - | chr2.4:13898626-13898645 | None:intergenic | 10.0% |
| !! | AAATAGAATATATTGAAGTA+AGG | - | chr2.4:13897468-13897487 | None:intergenic | 15.0% |
| !! | ATCAAAAAAGAATTTCAAAA+AGG | - | chr2.4:13898862-13898881 | None:intergenic | 15.0% |
| !! | TAATAACAAATGCTTATTAT+AGG | - | chr2.4:13897768-13897787 | None:intergenic | 15.0% |
| !! | TAATTAATTGAAAATGAACA+GGG | + | chr2.4:13899099-13899118 | MS.gene43049:intron | 15.0% |
| !! | TTAATTAATTGAAAATGAAC+AGG | + | chr2.4:13899098-13899117 | MS.gene43049:intron | 15.0% |
| !!! | AGCATTTGTTATTAAATATA+AGG | + | chr2.4:13897774-13897793 | MS.gene43049:intron | 15.0% |
| !!! | TCTTTTTTGATTACTTTAAA+TGG | + | chr2.4:13898871-13898890 | MS.gene43049:intron | 15.0% |
| !! | AAAATATATTGGATACCTTA+AGG | + | chr2.4:13898057-13898076 | MS.gene43049:intron | 20.0% |
| !! | AAATATGGATTTGTCTAATA+TGG | + | chr2.4:13898581-13898600 | MS.gene43049:intron | 20.0% |
| !! | ACGTCAAAAATTTCAAATTT+AGG | - | chr2.4:13898442-13898461 | None:intergenic | 20.0% |
| !! | GAAATAAAGAAGTAATGATT+TGG | - | chr2.4:13897387-13897406 | None:intergenic | 20.0% |
| !!! | AAACAATGAACAAACTTTTT+TGG | + | chr2.4:13898551-13898570 | MS.gene43049:intron | 20.0% |
| !!! | AATTCTAATTTTCTTTCCTT+TGG | - | chr2.4:13897859-13897878 | None:intergenic | 20.0% |
| !!! | TGATTAATCTAAAACATTTG+AGG | + | chr2.4:13897709-13897728 | MS.gene43049:intron | 20.0% |
| !!! | TTCAATAACTCATATTTTCA+AGG | + | chr2.4:13898798-13898817 | MS.gene43049:intron | 20.0% |
| !!! | TTTTTTCTTGAATTTCTTTC+AGG | + | chr2.4:13897500-13897519 | MS.gene43049:intron | 20.0% |
| !!! | TTTTTTGGTGATCTAAAATA+TGG | + | chr2.4:13898566-13898585 | MS.gene43049:intron | 20.0% |
| ! | GTAAATTGGGATCATTATAT+TGG | + | chr2.4:13898187-13898206 | MS.gene43049:intron | 25.0% |
| !! | AAAAAATGGTAGACTCTTTT+TGG | - | chr2.4:13898612-13898631 | None:intergenic | 25.0% |
| !! | AAAAATGGTAGACTCTTTTT+GGG | - | chr2.4:13898611-13898630 | None:intergenic | 25.0% |
| !! | AGCATTGAACATGATAAAAA+AGG | - | chr2.4:13898719-13898738 | None:intergenic | 25.0% |
| !! | GTTGTTTATATGGTATGTTT+TGG | + | chr2.4:13898266-13898285 | MS.gene43049:intron | 25.0% |
| !! | TCATTGTTTATATTTGAGAC+TGG | - | chr2.4:13898540-13898559 | None:intergenic | 25.0% |
| !! | TTCAAATTTAGGATACGATA+CGG | - | chr2.4:13898431-13898450 | None:intergenic | 25.0% |
| !!! | TATGGTATGTTTTGGTTTAA+AGG | + | chr2.4:13898274-13898293 | MS.gene43049:intron | 25.0% |
| AAACCTAAAGTTCAGATTCA+TGG | + | chr2.4:13897319-13897338 | MS.gene43049:CDS | 30.0% | |
| AACACTAAGCAAGTTTACAA+TGG | + | chr2.4:13897265-13897284 | MS.gene43049:CDS | 30.0% | |
| AATTGATGTGACCATATTAG+AGG | - | chr2.4:13899026-13899045 | None:intergenic | 30.0% | |
| ATATTGAAGTAAGGAACTCA+AGG | - | chr2.4:13897459-13897478 | None:intergenic | 30.0% | |
| ATATTGGCCATTACTTGAAA+AGG | + | chr2.4:13898203-13898222 | MS.gene43049:intron | 30.0% | |
| ATGCATGAATAAAGAACCAA+AGG | + | chr2.4:13897840-13897859 | MS.gene43049:intron | 30.0% | |
| CTGTGATGCACAATTAAAAT+AGG | - | chr2.4:13898951-13898970 | None:intergenic | 30.0% | |
| GATGAAAATACCAACATCAA+GGG | + | chr2.4:13899214-13899233 | MS.gene43049:CDS | 30.0% | |
| GGTTTAAAGGATATCTTAGT+TGG | + | chr2.4:13898287-13898306 | MS.gene43049:intron | 30.0% | |
| GTAATCAAAGTCCTCTAATA+TGG | + | chr2.4:13899012-13899031 | MS.gene43049:intron | 30.0% | |
| TAAATCATTCGGATACTTCT+GGG | - | chr2.4:13898021-13898040 | None:intergenic | 30.0% | |
| TACACCAAGTCAAAATACAA+TGG | - | chr2.4:13898321-13898340 | None:intergenic | 30.0% | |
| TATGAGATCTTTCTTCACTT+TGG | + | chr2.4:13897348-13897367 | MS.gene43049:CDS | 30.0% | |
| TATTGGCCATTACTTGAAAA+GGG | + | chr2.4:13898204-13898223 | MS.gene43049:intron | 30.0% | |
| TGATGAAAATACCAACATCA+AGG | + | chr2.4:13899213-13899232 | MS.gene43049:CDS | 30.0% | |
| TTAAATCATTCGGATACTTC+TGG | - | chr2.4:13898022-13898041 | None:intergenic | 30.0% | |
| ! | AATCTGAACTTTAGGTTTAG+TGG | - | chr2.4:13897317-13897336 | None:intergenic | 30.0% |
| !!! | CTATTTTAATTGTGCATCAC+AGG | + | chr2.4:13898949-13898968 | MS.gene43049:intron | 30.0% |
| AAAGAAGGAACACAAACCTA+TGG | - | chr2.4:13899169-13899188 | None:intergenic | 35.0% | |
| AACCTATGGATTCCTATGTT+TGG | - | chr2.4:13899155-13899174 | None:intergenic | 35.0% | |
| ATATACTTTGCATGCATCAG+AGG | - | chr2.4:13897745-13897764 | None:intergenic | 35.0% | |
| CATAGTGCAGGTTGTTTATA+TGG | + | chr2.4:13898256-13898275 | MS.gene43049:intron | 35.0% | |
| CATATAATACCTATGAAGCC+CGG | + | chr2.4:13897918-13897937 | MS.gene43049:intron | 35.0% | |
| GATACCTTAAGGATACGTTA+AGG | + | chr2.4:13898068-13898087 | MS.gene43049:intron | 35.0% | |
| GTATCCTTAACGTATCCTTA+AGG | - | chr2.4:13898075-13898094 | None:intergenic | 35.0% | |
| TGACTATCTTCATACTACCT+TGG | + | chr2.4:13898227-13898246 | MS.gene43049:intron | 35.0% | |
| TTAAAGAGATCCCTTGATGT+TGG | - | chr2.4:13899227-13899246 | None:intergenic | 35.0% | |
| ! | GTAAACTTGCTTAGTGTTGT+AGG | - | chr2.4:13897263-13897282 | None:intergenic | 35.0% |
| ! | GTTTATATTTGAGACTGGAG+TGG | - | chr2.4:13898535-13898554 | None:intergenic | 35.0% |
| ! | TTTAGGTTTAGTGGTAACTG+AGG | - | chr2.4:13897308-13897327 | None:intergenic | 35.0% |
| !! | AGGATATCTTAGTTGGTGAA+TGG | + | chr2.4:13898294-13898313 | MS.gene43049:intron | 35.0% |
| !! | TCAAATCTGTGTGTTTTGAG+TGG | + | chr2.4:13897648-13897667 | MS.gene43049:intron | 35.0% |
| !!! | TAGTCACCCTTTTCAAGTAA+TGG | - | chr2.4:13898213-13898232 | None:intergenic | 35.0% |
| !!! | TGGTCCATTGTATTTTGACT+TGG | + | chr2.4:13898314-13898333 | MS.gene43049:intron | 35.0% |
| AAGTAAGGAACTCAAGGACA+AGG | - | chr2.4:13897453-13897472 | None:intergenic | 40.0% | |
| AGGATAGTCACAGATATACC+AGG | + | chr2.4:13898969-13898988 | MS.gene43049:intron | 40.0% | |
| CCACCATGAATCTGAACTTT+AGG | - | chr2.4:13897325-13897344 | None:intergenic | 40.0% | |
| CCTAAAGTTCAGATTCATGG+TGG | + | chr2.4:13897322-13897341 | MS.gene43049:CDS | 40.0% | |
| GTCCAAACATAGGAATCCAT+AGG | + | chr2.4:13899150-13899169 | MS.gene43049:CDS | 40.0% | |
| TATACTATGAAGCCCCGATA+CGG | - | chr2.4:13898503-13898522 | None:intergenic | 40.0% | |
| TTGAAAAAAACAGCAGCCAC+AGG | - | chr2.4:13899287-13899306 | None:intergenic | 40.0% | |
| TTTGCACAAGACAATGACCT+CGG | + | chr2.4:13899257-13899276 | MS.gene43049:CDS | 40.0% | |
| ! | ATTTAGGATACGATACGGCT+TGG | - | chr2.4:13898426-13898445 | None:intergenic | 40.0% |
| !! | ATACTTCTGGGATACGTATC+CGG | - | chr2.4:13898009-13898028 | None:intergenic | 40.0% |
| !! | CAACAGATCCTCTTGCTATT+GGG | + | chr2.4:13897182-13897201 | MS.gene43049:CDS | 40.0% |
| AAAAAAACAGCAGCCACAGG+AGG | - | chr2.4:13899284-13899303 | None:intergenic | 45.0% | |
| AATGTAGCATCAGTTGTGCC+TGG | - | chr2.4:13898990-13899009 | None:intergenic | 45.0% | |
| ATACGGGTACGATACGATAC+GGG | - | chr2.4:13898474-13898493 | None:intergenic | 45.0% | |
| ATCACTCTCCCAATAGCAAG+AGG | - | chr2.4:13897193-13897212 | None:intergenic | 45.0% | |
| CCTGCACTATGATGATACCA+AGG | - | chr2.4:13898247-13898266 | None:intergenic | 45.0% | |
| CCTTGGTATCATCATAGTGC+AGG | + | chr2.4:13898244-13898263 | MS.gene43049:intron | 45.0% | |
| GAAATGCCACGTCCAAACAT+AGG | + | chr2.4:13899140-13899159 | MS.gene43049:CDS | 45.0% | |
| GATACGGGTACGATACGATA+CGG | - | chr2.4:13898475-13898494 | None:intergenic | 45.0% | |
| GGATACGTTAAGGATACTCC+CGG | + | chr2.4:13898078-13898097 | MS.gene43049:intron | 45.0% | |
| GGCACAACTGATGCTACATT+TGG | + | chr2.4:13898990-13899009 | MS.gene43049:CDS | 45.0% | |
| GGTTTAGTGGTAACTGAGGA+AGG | - | chr2.4:13897304-13897323 | None:intergenic | 45.0% | |
| TATCCGATACGTATCCGACA+CGG | - | chr2.4:13897966-13897985 | None:intergenic | 45.0% | |
| TGCGCTTCTGCTTGTAAAGA+AGG | - | chr2.4:13899184-13899203 | None:intergenic | 45.0% | |
| TGGATTCCTATGTTTGGACG+TGG | - | chr2.4:13899149-13899168 | None:intergenic | 45.0% | |
| TTGCACAAGACAATGACCTC+GGG | + | chr2.4:13899258-13899277 | MS.gene43049:CDS | 45.0% | |
| ! | GCAACAGATCCTCTTGCTAT+TGG | + | chr2.4:13897181-13897200 | MS.gene43049:CDS | 45.0% |
| !! | CTTGCTATTGGGAGAGTGAT+TGG | + | chr2.4:13897193-13897212 | MS.gene43049:CDS | 45.0% |
| !! | TACTTCTGGGATACGTATCC+GGG | - | chr2.4:13898008-13898027 | None:intergenic | 45.0% |
| !!! | CGACACCATTTTGGAGTATC+CGG | - | chr2.4:13897940-13897959 | None:intergenic | 45.0% |
| !!! | GACACCATTTTGGAGTATCC+GGG | - | chr2.4:13897939-13897958 | None:intergenic | 45.0% |
| !! | AAAAATTAAATTAAATCATT+CGG | - | chr2.4:13898032-13898051 | None:intergenic | 5.0% |
| ACCCGTATCCGTATCCGTAT+CGG | + | chr2.4:13898486-13898505 | MS.gene43049:intron | 50.0% | |
| ATCCGATACGTATCCGACAC+GGG | - | chr2.4:13897965-13897984 | None:intergenic | 50.0% | |
| ATGAAGCCCCGATACGGATA+CGG | - | chr2.4:13898497-13898516 | None:intergenic | 50.0% | |
| ATGACAGATCCAGATGTCCC+TGG | + | chr2.4:13897525-13897544 | MS.gene43049:CDS | 50.0% | |
| GAAGCCCGGATACTCCAAAA+TGG | + | chr2.4:13897932-13897951 | MS.gene43049:intron | 50.0% | |
| TACCCGTGTCGGATACGTAT+CGG | + | chr2.4:13897960-13897979 | MS.gene43049:intron | 50.0% | |
| TATCGGATACCGATACTCCG+CGG | + | chr2.4:13897977-13897996 | MS.gene43049:intron | 50.0% | |
| TGCAAGTGTTCCCTCAGGTA+CGG | - | chr2.4:13897561-13897580 | None:intergenic | 50.0% | |
| ! | ACACGGGTACGACACCATTT+TGG | - | chr2.4:13897949-13897968 | None:intergenic | 50.0% |
| ! | TTGGAGTATCCGGGCTTCAT+AGG | - | chr2.4:13897930-13897949 | None:intergenic | 50.0% |
| !! | AAATGGTGTCGTACCCGTGT+CGG | + | chr2.4:13897949-13897968 | MS.gene43049:intron | 50.0% |
| ACCAGTGCAAGTGTTCCCTC+AGG | - | chr2.4:13897566-13897585 | None:intergenic | 55.0% | |
| ACCTGAGGGAACACTTGCAC+TGG | + | chr2.4:13897562-13897581 | MS.gene43049:CDS | 55.0% | |
| CCCCGATACGGATACGGATA+CGG | - | chr2.4:13898491-13898510 | None:intergenic | 55.0% | |
| CCCGATACGGATACGGATAC+GGG | - | chr2.4:13898490-13898509 | None:intergenic | 55.0% | |
| CCCGTATCCGTATCCGTATC+GGG | + | chr2.4:13898487-13898506 | MS.gene43049:intron | 55.0% | |
| CCCTAGTGATCCGTACCTGA+GGG | + | chr2.4:13897548-13897567 | MS.gene43049:CDS | 55.0% | |
| CCCTCAGGTACGGATCACTA+GGG | - | chr2.4:13897551-13897570 | None:intergenic | 55.0% | |
| CCGTATCCGTATCCGTATCG+GGG | + | chr2.4:13898488-13898507 | MS.gene43049:intron | 55.0% | |
| TCCCTCAGGTACGGATCACT+AGG | - | chr2.4:13897552-13897571 | None:intergenic | 55.0% | |
| !! | TACGTATCCGGGAGTATCCG+CGG | - | chr2.4:13897997-13898016 | None:intergenic | 55.0% |
| AGGTACGGATCACTAGGGCC+AGG | - | chr2.4:13897546-13897565 | None:intergenic | 60.0% | |
| CGATACTCCGCGGATACTCC+CGG | + | chr2.4:13897987-13898006 | MS.gene43049:intron | 60.0% | |
| GCCCTAGTGATCCGTACCTG+AGG | + | chr2.4:13897547-13897566 | MS.gene43049:CDS | 60.0% | |
| GGTACGGATCACTAGGGCCA+GGG | - | chr2.4:13897545-13897564 | None:intergenic | 60.0% | |
| TCACTAGGGCCAGGGACATC+TGG | - | chr2.4:13897537-13897556 | None:intergenic | 60.0% | |
| !! | CGGGAGTATCCGCGGAGTAT+CGG | - | chr2.4:13897989-13898008 | None:intergenic | 60.0% |
| CAATGACCTCGGGCCTCCTG+TGG | + | chr2.4:13899268-13899287 | MS.gene43049:CDS | 65.0% | |
| CAGCAGCCACAGGAGGCCCG+AGG | - | chr2.4:13899277-13899296 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.4 | gene | 13897172 | 13899340 | 13897172 | ID=MS.gene43049 |
| chr2.4 | mRNA | 13897172 | 13899340 | 13897172 | ID=MS.gene43049.t1;Parent=MS.gene43049 |
| chr2.4 | exon | 13897172 | 13897369 | 13897172 | ID=MS.gene43049.t1.exon1;Parent=MS.gene43049.t1 |
| chr2.4 | CDS | 13897172 | 13897369 | 13897172 | ID=cds.MS.gene43049.t1;Parent=MS.gene43049.t1 |
| chr2.4 | exon | 13897522 | 13897583 | 13897522 | ID=MS.gene43049.t1.exon2;Parent=MS.gene43049.t1 |
| chr2.4 | CDS | 13897522 | 13897583 | 13897522 | ID=cds.MS.gene43049.t1;Parent=MS.gene43049.t1 |
| chr2.4 | exon | 13898971 | 13899011 | 13898971 | ID=MS.gene43049.t1.exon3;Parent=MS.gene43049.t1 |
| chr2.4 | CDS | 13898971 | 13899011 | 13898971 | ID=cds.MS.gene43049.t1;Parent=MS.gene43049.t1 |
| chr2.4 | exon | 13899120 | 13899340 | 13899120 | ID=MS.gene43049.t1.exon4;Parent=MS.gene43049.t1 |
| chr2.4 | CDS | 13899120 | 13899340 | 13899120 | ID=cds.MS.gene43049.t1;Parent=MS.gene43049.t1 |
| Gene Sequence |
| Protein sequence |
