Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene98252.t1 | XP_013443336.1 | 98.8 | 172 | 2 | 0 | 1 | 172 | 1 | 172 | 6.30E-92 | 346.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene98252.t1 | Q9XH44 | 74.4 | 172 | 43 | 1 | 2 | 172 | 3 | 174 | 1.5e-70 | 266.9 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene98252.t1 | G7ZV36 | 98.8 | 172 | 2 | 0 | 1 | 172 | 1 | 172 | 4.6e-92 | 346.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene98252 | MS.gene93778 | PPI |
MS.gene95893 | MS.gene98252 | PPI |
MS.gene98252 | MS.gene040147 | PPI |
MS.gene94652 | MS.gene98252 | PPI |
MS.gene98252 | MS.gene034467 | PPI |
MS.gene98252 | MS.gene35397 | PPI |
MS.gene042580 | MS.gene98252 | PPI |
MS.gene98252 | MS.gene51950 | PPI |
MS.gene51913 | MS.gene98252 | PPI |
MS.gene43049 | MS.gene98252 | PPI |
MS.gene62616 | MS.gene98252 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene98252.t1 | MTR_0020s0120 | 98.837 | 172 | 2 | 0 | 1 | 172 | 1 | 172 | 1.93e-125 | 350 |
MS.gene98252.t1 | MTR_0020s0120 | 94.767 | 172 | 2 | 1 | 1 | 172 | 1 | 165 | 4.55e-117 | 328 |
MS.gene98252.t1 | MTR_7g104460 | 70.833 | 168 | 48 | 1 | 6 | 172 | 7 | 174 | 9.95e-88 | 254 |
MS.gene98252.t1 | MTR_2g086270 | 66.474 | 173 | 57 | 1 | 1 | 172 | 1 | 173 | 1.43e-86 | 251 |
MS.gene98252.t1 | MTR_1g060190 | 62.264 | 159 | 58 | 1 | 6 | 162 | 7 | 165 | 6.03e-75 | 222 |
MS.gene98252.t1 | MTR_7g084970 | 59.036 | 166 | 68 | 0 | 7 | 172 | 8 | 173 | 1.35e-73 | 219 |
MS.gene98252.t1 | MTR_6g033040 | 58.084 | 167 | 70 | 0 | 6 | 172 | 7 | 173 | 3.18e-69 | 207 |
MS.gene98252.t1 | MTR_7g006690 | 57.485 | 167 | 70 | 1 | 7 | 172 | 8 | 174 | 3.95e-67 | 202 |
MS.gene98252.t1 | MTR_7g085020 | 57.895 | 171 | 71 | 1 | 2 | 172 | 5 | 174 | 4.51e-67 | 202 |
MS.gene98252.t1 | MTR_7g006630 | 56.213 | 169 | 73 | 1 | 5 | 172 | 1 | 169 | 1.94e-66 | 201 |
MS.gene98252.t1 | MTR_8g106840 | 53.757 | 173 | 78 | 2 | 1 | 172 | 2 | 173 | 2.31e-63 | 192 |
MS.gene98252.t1 | MTR_7g085040 | 53.750 | 160 | 73 | 1 | 13 | 172 | 11 | 169 | 2.74e-59 | 182 |
MS.gene98252.t1 | MTR_5g078320 | 46.575 | 73 | 38 | 1 | 100 | 171 | 16 | 88 | 1.10e-16 | 71.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene98252.t1 | AT5G62040 | 68.391 | 174 | 53 | 2 | 1 | 172 | 1 | 174 | 1.88e-84 | 246 |
MS.gene98252.t1 | AT2G27550 | 69.822 | 169 | 49 | 2 | 6 | 172 | 7 | 175 | 7.28e-83 | 242 |
MS.gene98252.t1 | AT5G03840 | 62.791 | 172 | 63 | 1 | 2 | 172 | 6 | 177 | 2.83e-81 | 238 |
MS.gene98252.t1 | AT1G65480 | 62.275 | 167 | 63 | 0 | 6 | 172 | 7 | 173 | 7.80e-76 | 224 |
MS.gene98252.t1 | AT1G65480 | 62.275 | 167 | 63 | 0 | 6 | 172 | 51 | 217 | 1.32e-75 | 225 |
MS.gene98252.t1 | AT4G20370 | 58.683 | 167 | 69 | 0 | 6 | 172 | 7 | 173 | 8.92e-69 | 206 |
MS.gene98252.t1 | AT1G18100 | 52.299 | 174 | 80 | 2 | 1 | 172 | 1 | 173 | 2.75e-61 | 187 |
Find 44 sgRNAs with CRISPR-Local
Find 113 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GTCCTAGTGATCCACATTTA+AGG | 0.192828 | 6.2:+55203875 | MS.gene98252:CDS |
TGGATTCCAATCACTGGCTT+TGG | 0.338572 | 6.2:-55204756 | None:intergenic |
GGTACCACAGATGTCTCTTT+TGG | 0.356770 | 6.2:+55204026 | MS.gene98252:CDS |
TCACTAGGACTAGGAGCATC+TGG | 0.365823 | 6.2:-55203862 | None:intergenic |
GGCTTGTTCATAACAATAGA+AGG | 0.369931 | 6.2:-55203257 | None:intergenic |
CATGAGATCTGCTTATACTT+TGG | 0.379247 | 6.2:+55203304 | MS.gene98252:CDS |
ACAAGATGAAGACATATCTA+TGG | 0.389834 | 6.2:-55204776 | None:intergenic |
AACAAGCCAAGGGTTGATAT+TGG | 0.415081 | 6.2:+55203272 | MS.gene98252:CDS |
TCCTAGTGATCCACATTTAA+GGG | 0.415346 | 6.2:+55203876 | MS.gene98252:CDS |
GAGAATCCAAAGCCAGTGAT+TGG | 0.439509 | 6.2:+55204750 | MS.gene98252:CDS |
ATTTACAATGTCTAGGCCAT+TGG | 0.453195 | 6.2:+55203121 | None:intergenic |
TTGAAGTAAACTGCAGCAAC+AGG | 0.458327 | 6.2:-55204891 | None:intergenic |
ATGACCATTTGCAACTTGCT+TGG | 0.464272 | 6.2:-55203225 | None:intergenic |
CTTTCTGTAGGAAGAGTGAT+AGG | 0.465009 | 6.2:+55203149 | MS.gene98252:CDS |
GTCACATTCATTCTTACACT+TGG | 0.469107 | 6.2:-55203194 | None:intergenic |
ACCATTTGCAACTTGCTTGG+TGG | 0.494743 | 6.2:-55203222 | None:intergenic |
GAGAAACTGCAGCAAGAAGA+AGG | 0.495118 | 6.2:+55204922 | MS.gene98252:CDS |
ATCACTCTTCCTACAGAAAG+TGG | 0.502508 | 6.2:-55203146 | None:intergenic |
TTGAAATTGTCTCTAGAAGA+TGG | 0.510509 | 6.2:-55204831 | None:intergenic |
TTCTCACAGGAGAATAACCT+TGG | 0.519597 | 6.2:+55204864 | MS.gene98252:CDS |
CTATTGTTATGAACAAGCCA+AGG | 0.525548 | 6.2:+55203261 | MS.gene98252:CDS |
TCCACCAAGCAAGTTGCAAA+TGG | 0.526204 | 6.2:+55203221 | MS.gene98252:CDS |
CATTGTGATTTACAATGTCT+AGG | 0.527247 | 6.2:+55203114 | None:intergenic |
TGAAATTGTCTCTAGAAGAT+GGG | 0.541509 | 6.2:-55204830 | None:intergenic |
AAATGTGGATCACTAGGACT+AGG | 0.546629 | 6.2:-55203871 | None:intergenic |
CACTAGGACTAGGAGCATCT+GGG | 0.549402 | 6.2:-55203861 | None:intergenic |
AGGATGGTTACAGATATTCC+AGG | 0.555677 | 6.2:+55204005 | MS.gene98252:intron |
AAGCCAAGGGTTGATATTGG+TGG | 0.558895 | 6.2:+55203275 | MS.gene98252:CDS |
AAAGAGACATCTGTGGTACC+TGG | 0.563172 | 6.2:-55204023 | None:intergenic |
CAACACAAGGAGATTCTCAC+AGG | 0.564893 | 6.2:+55204851 | MS.gene98252:CDS |
TATCTATGGATTCCAATCAC+TGG | 0.569156 | 6.2:-55204762 | None:intergenic |
ATTTAAGGGAACATCTCCAC+TGG | 0.572031 | 6.2:+55203890 | MS.gene98252:CDS |
TCATCTTGTTCAAACAGAGA+AGG | 0.579298 | 6.2:+55204790 | MS.gene98252:CDS |
TCACCACCAATATCAACCCT+TGG | 0.583858 | 6.2:-55203278 | None:intergenic |
CCATTGGAACCACTTTCTGT+AGG | 0.584120 | 6.2:+55203137 | MS.gene98252:CDS |
TATTGTTATGAACAAGCCAA+GGG | 0.586275 | 6.2:+55203262 | MS.gene98252:CDS |
CTAGAGACAATTTCAACACA+AGG | 0.589107 | 6.2:+55204838 | MS.gene98252:CDS |
TCCCTTAAATGTGGATCACT+AGG | 0.597152 | 6.2:-55203877 | None:intergenic |
CCTACAGAAAGTGGTTCCAA+TGG | 0.603095 | 6.2:-55203137 | None:intergenic |
TGGAGATGTTCCCTTAAATG+TGG | 0.614063 | 6.2:-55203886 | None:intergenic |
GAAATTGTCTCTAGAAGATG+GGG | 0.619592 | 6.2:-55204829 | None:intergenic |
TGATGCAGGAAATGAGATTG+TGG | 0.645531 | 6.2:+55204722 | MS.gene98252:intron |
CTGCAGCAACAGGTAAACCA+AGG | 0.708296 | 6.2:-55204881 | None:intergenic |
CTAACCAAAAGAGACATCTG+TGG | 0.754543 | 6.2:-55204030 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AATTATAATCTTATAACAAA+GGG | + | chr6.2:55204690-55204709 | MS.gene98252:intron | 10.0% |
!! | ATATAGAGAATAATTAATTA+AGG | - | chr6.2:55204085-55204104 | None:intergenic | 10.0% |
!! | GTAAAAAAATAAATAACAAA+AGG | + | chr6.2:55203569-55203588 | MS.gene98252:intron | 10.0% |
!! | TAATTATAATCTTATAACAA+AGG | + | chr6.2:55204689-55204708 | MS.gene98252:intron | 10.0% |
!!! | ATAATAAATGTTTTAGAAAT+CGG | - | chr6.2:55203733-55203752 | None:intergenic | 10.0% |
!!! | ATTACCATTAAAATTTTATA+AGG | + | chr6.2:55204495-55204514 | MS.gene98252:intron | 10.0% |
!!! | ATTTATTTATTTTTACTTGA+AGG | - | chr6.2:55203527-55203546 | None:intergenic | 10.0% |
!!! | TTATATATTGATAATAACAT+AGG | + | chr6.2:55203798-55203817 | MS.gene98252:intron | 10.0% |
!! | GGAAATAAATATACTAATAA+AGG | - | chr6.2:55203446-55203465 | None:intergenic | 15.0% |
!!! | TAGTCCTTATAAAATTTTAA+TGG | - | chr6.2:55204502-55204521 | None:intergenic | 15.0% |
!!! | TTCAAGAAGTTTTAAAAATA+GGG | + | chr6.2:55204435-55204454 | MS.gene98252:intron | 15.0% |
!!! | TTCTAAAACATTTATTATAG+TGG | + | chr6.2:55203735-55203754 | MS.gene98252:intron | 15.0% |
!!! | TTTAAAACTTCTTGAAAAAA+TGG | - | chr6.2:55204431-55204450 | None:intergenic | 15.0% |
!!! | TTTCAAGAAGTTTTAAAAAT+AGG | + | chr6.2:55204434-55204453 | MS.gene98252:intron | 15.0% |
!! | AAAATAAATAACAAAAGGCA+AGG | + | chr6.2:55203574-55203593 | MS.gene98252:intron | 20.0% |
!! | ATGCTAATAAGTTGTAATAA+TGG | + | chr6.2:55204660-55204679 | MS.gene98252:intron | 20.0% |
!! | CAATGATAAAAAACATGATT+TGG | - | chr6.2:55203467-55203486 | None:intergenic | 20.0% |
!! | GTCTCTATAAAATGAAAATA+AGG | - | chr6.2:55204386-55204405 | None:intergenic | 20.0% |
!! | GTTTATCATATGTTACATTA+GGG | + | chr6.2:55203377-55203396 | MS.gene98252:intron | 20.0% |
!! | TAATTTATTACATATGTGCA+TGG | + | chr6.2:55204217-55204236 | MS.gene98252:intron | 20.0% |
!! | TCTTACAAACTACAATATTA+TGG | + | chr6.2:55204463-55204482 | MS.gene98252:intron | 20.0% |
!! | TGTTTATCATATGTTACATT+AGG | + | chr6.2:55203376-55203395 | MS.gene98252:intron | 20.0% |
!!! | AATTCTAACTCAATGATTTT+TGG | - | chr6.2:55204570-55204589 | None:intergenic | 20.0% |
!!! | TCTCTATATTTGTTAATCTA+AGG | + | chr6.2:55204096-55204115 | MS.gene98252:intron | 20.0% |
!!! | TGAAAGCTTATAATTTTGTA+GGG | - | chr6.2:55204327-55204346 | None:intergenic | 20.0% |
!!! | TTGAAAGCTTATAATTTTGT+AGG | - | chr6.2:55204328-55204347 | None:intergenic | 20.0% |
!!! | TTTTATAGAGACTATTTTGA+AGG | + | chr6.2:55204394-55204413 | MS.gene98252:intron | 20.0% |
! | ACTAATAAAGGTAGTTAGTT+AGG | - | chr6.2:55203434-55203453 | None:intergenic | 25.0% |
! | AGGATTAATATACCAAATGA+TGG | + | chr6.2:55203818-55203837 | MS.gene98252:intron | 25.0% |
! | AGTTAGTTCAAACAATTAAG+CGG | - | chr6.2:55203702-55203721 | None:intergenic | 25.0% |
! | ATTAAGGTTATATTGATCCT+AGG | - | chr6.2:55204069-55204088 | None:intergenic | 25.0% |
! | TACAAACTACAATATTATGG+AGG | + | chr6.2:55204466-55204485 | MS.gene98252:intron | 25.0% |
! | TTAAACAACTTGAGTTCAAT+TGG | + | chr6.2:55204163-55204182 | MS.gene98252:intron | 25.0% |
! | TTACATGTATGGTTGTAAAA+AGG | - | chr6.2:55204607-55204626 | None:intergenic | 25.0% |
! | TTGTAAAAAGGTTTGAGAAA+TGG | - | chr6.2:55204595-55204614 | None:intergenic | 25.0% |
!!! | AGTTTTATTATACAAACCAG+TGG | - | chr6.2:55203909-55203928 | None:intergenic | 25.0% |
AATCCAGTTCAATGAGAATA+AGG | + | chr6.2:55203636-55203655 | MS.gene98252:intron | 30.0% | |
ACAAGATGAAGACATATCTA+TGG | - | chr6.2:55204779-55204798 | None:intergenic | 30.0% | |
ATACCTTATTCTCATTGAAC+TGG | - | chr6.2:55203642-55203661 | None:intergenic | 30.0% | |
ATTGTTTGAACTAACTGGTT+TGG | + | chr6.2:55203706-55203725 | MS.gene98252:intron | 30.0% | |
CAATTGGAAAATCAACTATG+AGG | + | chr6.2:55204179-55204198 | MS.gene98252:intron | 30.0% | |
GCTTAATTGTTTGAACTAAC+TGG | + | chr6.2:55203701-55203720 | MS.gene98252:intron | 30.0% | |
GTTAGTTCAAACAATTAAGC+GGG | - | chr6.2:55203701-55203720 | None:intergenic | 30.0% | |
TATTGTTATGAACAAGCCAA+GGG | + | chr6.2:55203262-55203281 | MS.gene98252:CDS | 30.0% | |
TGTGATGCAATTTACATGTA+TGG | - | chr6.2:55204618-55204637 | None:intergenic | 30.0% | |
TTAAATCCTCAAGTTCTTAG+TGG | - | chr6.2:55204147-55204166 | None:intergenic | 30.0% | |
! | TGAAATTGTCTCTAGAAGAT+GGG | - | chr6.2:55204833-55204852 | None:intergenic | 30.0% |
! | TTGAAATTGTCTCTAGAAGA+TGG | - | chr6.2:55204834-55204853 | None:intergenic | 30.0% |
! | TTTTTACTTGAAGGTCTCAT+CGG | - | chr6.2:55203518-55203537 | None:intergenic | 30.0% |
!! | ATAACAGCAAGTTGATAAGA+GGG | - | chr6.2:55203977-55203996 | None:intergenic | 30.0% |
!! | TACATTAGGGAAGTATCTAT+CGG | + | chr6.2:55203390-55203409 | MS.gene98252:intron | 30.0% |
AAGGGAATTAACTTTGATGC+AGG | + | chr6.2:55204708-55204727 | MS.gene98252:intron | 35.0% | |
ATCGTAATCAAATCAAACCG+AGG | + | chr6.2:55203663-55203682 | MS.gene98252:intron | 35.0% | |
CATGAGATCTGCTTATACTT+TGG | + | chr6.2:55203304-55203323 | MS.gene98252:CDS | 35.0% | |
CTAGAGACAATTTCAACACA+AGG | + | chr6.2:55204838-55204857 | MS.gene98252:CDS | 35.0% | |
CTATTGTTATGAACAAGCCA+AGG | + | chr6.2:55203261-55203280 | MS.gene98252:CDS | 35.0% | |
GATCTACAAGTTCCATCATT+TGG | - | chr6.2:55203833-55203852 | None:intergenic | 35.0% | |
GTCACATTCATTCTTACACT+TGG | - | chr6.2:55203197-55203216 | None:intergenic | 35.0% | |
GTTTAGTCCCTACAAAAGTT+TGG | + | chr6.2:55204348-55204367 | MS.gene98252:intron | 35.0% | |
TATCTATGGATTCCAATCAC+TGG | - | chr6.2:55204765-55204784 | None:intergenic | 35.0% | |
TCATCTTGTTCAAACAGAGA+AGG | + | chr6.2:55204790-55204809 | MS.gene98252:CDS | 35.0% | |
TCATTGAACTGGATTTAACC+AGG | - | chr6.2:55203631-55203650 | None:intergenic | 35.0% | |
TCCTAGTGATCCACATTTAA+GGG | + | chr6.2:55203876-55203895 | MS.gene98252:CDS | 35.0% | |
! | AAAGTGAGCCAAACTTTTGT+AGG | - | chr6.2:55204359-55204378 | None:intergenic | 35.0% |
! | AAGTGAGCCAAACTTTTGTA+GGG | - | chr6.2:55204358-55204377 | None:intergenic | 35.0% |
! | CTTTTACCACTAAGAACTTG+AGG | + | chr6.2:55204138-55204157 | MS.gene98252:intron | 35.0% |
! | GAAATTGTCTCTAGAAGATG+GGG | - | chr6.2:55204832-55204851 | None:intergenic | 35.0% |
! | GGCTTGTTCATAACAATAGA+AGG | - | chr6.2:55203260-55203279 | None:intergenic | 35.0% |
!! | ATCTATCGGCTTTGATGATT+TGG | + | chr6.2:55203404-55203423 | MS.gene98252:intron | 35.0% |
!! | GATAACAGCAAGTTGATAAG+AGG | - | chr6.2:55203978-55203997 | None:intergenic | 35.0% |
AAATGTGGATCACTAGGACT+AGG | - | chr6.2:55203874-55203893 | None:intergenic | 40.0% | |
AGGATGGTTACAGATATTCC+AGG | + | chr6.2:55204005-55204024 | MS.gene98252:intron | 40.0% | |
ATCACTCTTCCTACAGAAAG+TGG | - | chr6.2:55203149-55203168 | None:intergenic | 40.0% | |
ATTGATCCTAGGATAGAGAG+AGG | - | chr6.2:55204058-55204077 | None:intergenic | 40.0% | |
ATTTAAGGGAACATCTCCAC+TGG | + | chr6.2:55203890-55203909 | MS.gene98252:CDS | 40.0% | |
CTAACCAAAAGAGACATCTG+TGG | - | chr6.2:55204033-55204052 | None:intergenic | 40.0% | |
CTTTCTGTAGGAAGAGTGAT+AGG | + | chr6.2:55203149-55203168 | MS.gene98252:CDS | 40.0% | |
GTCCTAGTGATCCACATTTA+AGG | + | chr6.2:55203875-55203894 | MS.gene98252:CDS | 40.0% | |
TCCCTTAAATGTGGATCACT+AGG | - | chr6.2:55203880-55203899 | None:intergenic | 40.0% | |
TGATGCAGGAAATGAGATTG+TGG | + | chr6.2:55204722-55204741 | MS.gene98252:intron | 40.0% | |
TGGAATATCTGTAACCATCC+TGG | - | chr6.2:55204006-55204025 | None:intergenic | 40.0% | |
TGGAGATGTTCCCTTAAATG+TGG | - | chr6.2:55203889-55203908 | None:intergenic | 40.0% | |
TTCTCACAGGAGAATAACCT+TGG | + | chr6.2:55204864-55204883 | MS.gene98252:CDS | 40.0% | |
TTGAAGTAAACTGCAGCAAC+AGG | - | chr6.2:55204894-55204913 | None:intergenic | 40.0% | |
TTGATCCTAGGATAGAGAGA+GGG | - | chr6.2:55204057-55204076 | None:intergenic | 40.0% | |
! | ATGACCATTTGCAACTTGCT+TGG | - | chr6.2:55203228-55203247 | None:intergenic | 40.0% |
!! | AACAAGCCAAGGGTTGATAT+TGG | + | chr6.2:55203272-55203291 | MS.gene98252:CDS | 40.0% |
!! | ACTTGCTGTTATCATTTGCC+AGG | + | chr6.2:55203985-55204004 | MS.gene98252:intron | 40.0% |
AAAGAGACATCTGTGGTACC+TGG | - | chr6.2:55204026-55204045 | None:intergenic | 45.0% | |
CAAAAGGCAAGGATGAGAAC+CGG | + | chr6.2:55203585-55203604 | MS.gene98252:intron | 45.0% | |
CAACACAAGGAGATTCTCAC+AGG | + | chr6.2:55204851-55204870 | MS.gene98252:CDS | 45.0% | |
CCATTGGAACCACTTTCTGT+AGG | + | chr6.2:55203137-55203156 | MS.gene98252:CDS | 45.0% | |
CCTACAGAAAGTGGTTCCAA+TGG | - | chr6.2:55203140-55203159 | None:intergenic | 45.0% | |
GAGAAACTGCAGCAAGAAGA+AGG | + | chr6.2:55204922-55204941 | MS.gene98252:CDS | 45.0% | |
GAGAATCCAAAGCCAGTGAT+TGG | + | chr6.2:55204750-55204769 | MS.gene98252:CDS | 45.0% | |
GCTGTTATCATTTGCCAGGA+TGG | + | chr6.2:55203989-55204008 | MS.gene98252:intron | 45.0% | |
TAACCAGGTTAAACCGCAGT+TGG | - | chr6.2:55203616-55203635 | None:intergenic | 45.0% | |
TCACCACCAATATCAACCCT+TGG | - | chr6.2:55203281-55203300 | None:intergenic | 45.0% | |
TCCACCAAGCAAGTTGCAAA+TGG | + | chr6.2:55203221-55203240 | MS.gene98252:CDS | 45.0% | |
TTAGTCCCTCTCTCTATCCT+AGG | + | chr6.2:55204049-55204068 | MS.gene98252:intron | 45.0% | |
! | ACCATTTGCAACTTGCTTGG+TGG | - | chr6.2:55203225-55203244 | None:intergenic | 45.0% |
! | GGTACCACAGATGTCTCTTT+TGG | + | chr6.2:55204026-55204045 | MS.gene98252:CDS | 45.0% |
! | TAAACCGCAGTTGGTTCAAC+CGG | - | chr6.2:55203607-55203626 | None:intergenic | 45.0% |
!! | AAGCCAAGGGTTGATATTGG+TGG | + | chr6.2:55203275-55203294 | MS.gene98252:CDS | 45.0% |
!! | TGGATTCCAATCACTGGCTT+TGG | - | chr6.2:55204759-55204778 | None:intergenic | 45.0% |
!! | AATTTATATAATAAAAATCA+TGG | + | chr6.2:55204283-55204302 | MS.gene98252:intron | 5.0% |
!! | ATTTATATAATAAAAATCAT+GGG | + | chr6.2:55204284-55204303 | MS.gene98252:intron | 5.0% |
AGAACCGGTTGAACCAACTG+CGG | + | chr6.2:55203600-55203619 | MS.gene98252:intron | 50.0% | |
CTGCAGCAACAGGTAAACCA+AGG | - | chr6.2:55204884-55204903 | None:intergenic | 50.0% | |
GAACCAACTGCGGTTTAACC+TGG | + | chr6.2:55203610-55203629 | MS.gene98252:intron | 50.0% | |
!! | CACTAGGACTAGGAGCATCT+GGG | - | chr6.2:55203864-55203883 | None:intergenic | 50.0% |
!! | TCACTAGGACTAGGAGCATC+TGG | - | chr6.2:55203865-55203884 | None:intergenic | 50.0% |
GCGGGAAGCAGTAAGTTCCT+CGG | - | chr6.2:55203683-55203702 | None:intergenic | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6.2 | gene | 55203128 | 55204947 | 55203128 | ID=MS.gene98252 |
chr6.2 | mRNA | 55203128 | 55204947 | 55203128 | ID=MS.gene98252.t1;Parent=MS.gene98252 |
chr6.2 | exon | 55203128 | 55203325 | 55203128 | ID=MS.gene98252.t1.exon1;Parent=MS.gene98252.t1 |
chr6.2 | CDS | 55203128 | 55203325 | 55203128 | ID=cds.MS.gene98252.t1;Parent=MS.gene98252.t1 |
chr6.2 | exon | 55203850 | 55203911 | 55203850 | ID=MS.gene98252.t1.exon2;Parent=MS.gene98252.t1 |
chr6.2 | CDS | 55203850 | 55203911 | 55203850 | ID=cds.MS.gene98252.t1;Parent=MS.gene98252.t1 |
chr6.2 | exon | 55204007 | 55204047 | 55204007 | ID=MS.gene98252.t1.exon3;Parent=MS.gene98252.t1 |
chr6.2 | CDS | 55204007 | 55204047 | 55204007 | ID=cds.MS.gene98252.t1;Parent=MS.gene98252.t1 |
chr6.2 | exon | 55204730 | 55204947 | 55204730 | ID=MS.gene98252.t1.exon4;Parent=MS.gene98252.t1 |
chr6.2 | CDS | 55204730 | 55204947 | 55204730 | ID=cds.MS.gene98252.t1;Parent=MS.gene98252.t1 |
Gene Sequence |
Protein sequence |