Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene042580.t1 | XP_013451589.1 | 96.6 | 175 | 6 | 0 | 1 | 175 | 1 | 175 | 4.30E-96 | 360.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene042580.t1 | Q93WI9 | 74.7 | 174 | 44 | 0 | 2 | 175 | 4 | 177 | 3.2e-76 | 285.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene042580.t1 | A0A072U7F6 | 96.6 | 175 | 6 | 0 | 1 | 175 | 1 | 175 | 3.1e-96 | 360.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene042580 | MS.gene35397 | PPI |
| MS.gene042580 | MS.gene95893 | PPI |
| MS.gene042580 | MS.gene51950 | PPI |
| MS.gene000759 | MS.gene042580 | PPI |
| MS.gene94652 | MS.gene042580 | PPI |
| MS.gene042580 | MS.gene98252 | PPI |
| MS.gene43049 | MS.gene042580 | PPI |
| MS.gene51913 | MS.gene042580 | PPI |
| MS.gene042580 | MS.gene040147 | PPI |
| MS.gene62616 | MS.gene042580 | PPI |
| MS.gene042580 | MS.gene93778 | PPI |
| MS.gene042580 | MS.gene034467 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene042580.t1 | MTR_6g033040 | 96.571 | 175 | 6 | 0 | 1 | 175 | 1 | 175 | 7.27e-125 | 348 |
| MS.gene042580.t1 | MTR_7g084970 | 74.566 | 173 | 44 | 0 | 1 | 173 | 1 | 173 | 4.71e-96 | 276 |
| MS.gene042580.t1 | MTR_7g006690 | 70.455 | 176 | 51 | 1 | 1 | 175 | 1 | 176 | 7.28e-90 | 260 |
| MS.gene042580.t1 | MTR_7g006630 | 72.941 | 170 | 45 | 1 | 7 | 175 | 2 | 171 | 1.70e-89 | 259 |
| MS.gene042580.t1 | MTR_7g085020 | 66.279 | 172 | 58 | 0 | 2 | 173 | 3 | 174 | 4.14e-82 | 240 |
| MS.gene042580.t1 | MTR_7g085040 | 66.272 | 169 | 53 | 2 | 7 | 175 | 7 | 171 | 2.12e-79 | 233 |
| MS.gene042580.t1 | MTR_0020s0120 | 56.886 | 167 | 72 | 0 | 7 | 173 | 6 | 172 | 1.86e-68 | 206 |
| MS.gene042580.t1 | MTR_7g104460 | 56.322 | 174 | 75 | 1 | 1 | 173 | 1 | 174 | 2.23e-67 | 203 |
| MS.gene042580.t1 | MTR_0020s0120 | 55.090 | 167 | 68 | 1 | 7 | 173 | 6 | 165 | 8.82e-64 | 194 |
| MS.gene042580.t1 | MTR_2g086270 | 53.571 | 168 | 77 | 1 | 7 | 173 | 6 | 173 | 1.61e-62 | 191 |
| MS.gene042580.t1 | MTR_1g060190 | 50.909 | 165 | 79 | 1 | 1 | 163 | 1 | 165 | 8.32e-59 | 181 |
| MS.gene042580.t1 | MTR_8g106840 | 51.190 | 168 | 80 | 2 | 1 | 167 | 1 | 167 | 4.66e-55 | 172 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene042580.t1 | AT1G65480 | 70.857 | 175 | 51 | 0 | 1 | 175 | 45 | 219 | 3.24e-95 | 275 |
| MS.gene042580.t1 | AT1G65480 | 70.857 | 175 | 51 | 0 | 1 | 175 | 1 | 175 | 1.22e-94 | 272 |
| MS.gene042580.t1 | AT4G20370 | 72.414 | 174 | 48 | 0 | 1 | 174 | 1 | 174 | 5.43e-93 | 268 |
| MS.gene042580.t1 | AT5G62040 | 55.828 | 163 | 70 | 2 | 7 | 167 | 6 | 168 | 1.25e-63 | 194 |
| MS.gene042580.t1 | AT5G03840 | 55.621 | 169 | 72 | 2 | 7 | 173 | 10 | 177 | 7.73e-63 | 192 |
| MS.gene042580.t1 | AT2G27550 | 51.429 | 175 | 83 | 2 | 1 | 173 | 1 | 175 | 2.09e-59 | 183 |
| MS.gene042580.t1 | AT1G18100 | 51.724 | 174 | 79 | 3 | 3 | 173 | 2 | 173 | 6.92e-55 | 171 |
Find 53 sgRNAs with CRISPR-Local
Find 103 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATCTCTAGTGTTGAAATTT+TGG | 0.129964 | 6.3:+21212181 | None:intergenic |
| TGAAGATACTCCCTCAAATT+TGG | 0.133560 | 6.3:+21213176 | None:intergenic |
| TTTGCAGAACTTTACAATTT+AGG | 0.187034 | 6.3:-21212159 | MS.gene042580:CDS |
| CCATTGTAGGAAACTCTTAT+AGG | 0.261187 | 6.3:+21213789 | None:intergenic |
| CTTGTTGTTGGAGGTGTAAT+TGG | 0.262527 | 6.3:-21213843 | MS.gene042580:CDS |
| GCAACTACTGGACCTACTTT+TGG | 0.329008 | 6.3:-21213000 | MS.gene042580:intron |
| CCCTTGGTTGATTGACAACT+TGG | 0.336669 | 6.3:+21213730 | None:intergenic |
| TTACTAGGGCTAGGTGCATC+TGG | 0.343329 | 6.3:+21213200 | None:intergenic |
| GTTAAGTTCTTTACCATTGT+AGG | 0.343846 | 6.3:+21213776 | None:intergenic |
| TCCCTCAAATTTGGGTTACT+AGG | 0.354610 | 6.3:+21213185 | None:intergenic |
| GAAGATACTCCCTCAAATTT+GGG | 0.384091 | 6.3:+21213177 | None:intergenic |
| ACTGATATTCCTGCAACTAC+TGG | 0.406723 | 6.3:-21213012 | MS.gene042580:CDS |
| AGAGACCCTCTTGTTGTTGG+AGG | 0.440006 | 6.3:-21213852 | MS.gene042580:CDS |
| AAAGTAGGTCCAGTAGTTGC+AGG | 0.446406 | 6.3:+21213003 | None:intergenic |
| AGTAGAGACCCTCTTGTTGT+TGG | 0.450114 | 6.3:-21213855 | MS.gene042580:CDS |
| CCCTCAAATTTGGGTTACTA+GGG | 0.456294 | 6.3:+21213186 | None:intergenic |
| CAACCAAGGGTTAGTGTTGG+TGG | 0.468269 | 6.3:-21213717 | MS.gene042580:CDS |
| CCCTAGTAACCCAAATTTGA+GGG | 0.476671 | 6.3:-21213186 | MS.gene042580:CDS |
| AGAGACACGGTTTATGCTCC+AGG | 0.477518 | 6.3:-21212210 | MS.gene042580:CDS |
| TTAAAATAAGCAGCAGCAGC+CGG | 0.478333 | 6.3:+21212132 | None:intergenic |
| ATAGGTATAGAGCTTTGAAA+GGG | 0.480771 | 6.3:+21213807 | None:intergenic |
| AGGTGTAATTGGTGATGTAT+TGG | 0.494856 | 6.3:-21213832 | MS.gene042580:CDS |
| ATTCAAAGGGAACATGGCTC+TGG | 0.513303 | 6.3:-21212108 | MS.gene042580:CDS |
| AAATTTGGGTTACTAGGGCT+AGG | 0.513848 | 6.3:+21213191 | None:intergenic |
| GCCCTAGTAACCCAAATTTG+AGG | 0.520538 | 6.3:-21213187 | MS.gene042580:CDS |
| TGAGAGTCCACGACCTTCGA+TGG | 0.526932 | 6.3:-21212274 | MS.gene042580:CDS |
| TGAATTCCCATCGAAGGTCG+TGG | 0.534390 | 6.3:+21212267 | None:intergenic |
| TATAGGTATAGAGCTTTGAA+AGG | 0.536021 | 6.3:+21213806 | None:intergenic |
| CAAAGGGAACATGGCTCTGG+TGG | 0.536507 | 6.3:-21212105 | MS.gene042580:CDS |
| GAAGGTCGTGGACTCTCATA+AGG | 0.541067 | 6.3:+21212279 | None:intergenic |
| TTTAACATTCAAAGGGAACA+TGG | 0.551950 | 6.3:-21212114 | MS.gene042580:CDS |
| AACATGGCTCTGGTGGAAGA+AGG | 0.555871 | 6.3:-21212098 | MS.gene042580:CDS |
| ACTTTACAATTTAGGATCGC+CGG | 0.558636 | 6.3:-21212151 | MS.gene042580:CDS |
| TGAACAAACATACCAAAAGT+AGG | 0.560140 | 6.3:+21212988 | None:intergenic |
| ATTTGAGGGAGTATCTTCAC+TGG | 0.569130 | 6.3:-21213172 | MS.gene042580:intron |
| GGTTGATTGACAACTTGGGA+AGG | 0.576577 | 6.3:+21213735 | None:intergenic |
| TCTCCACCAACACTAACCCT+TGG | 0.579316 | 6.3:+21213714 | None:intergenic |
| TCTTAGAAACTTCTATACTC+TGG | 0.592213 | 6.3:-21213688 | MS.gene042580:intron |
| CCCAAGTTGTCAATCAACCA+AGG | 0.592809 | 6.3:-21213731 | MS.gene042580:CDS |
| GAGAGTCCACGACCTTCGAT+GGG | 0.604058 | 6.3:-21212273 | MS.gene042580:CDS |
| CCTATAAGAGTTTCCTACAA+TGG | 0.606068 | 6.3:-21213789 | MS.gene042580:CDS |
| ACACGGTTTATGCTCCAGGT+TGG | 0.609796 | 6.3:-21212206 | MS.gene042580:CDS |
| ATTACACCTCCAACAACAAG+AGG | 0.612421 | 6.3:+21213846 | None:intergenic |
| CCAAGTTGTCAATCAACCAA+GGG | 0.622344 | 6.3:-21213730 | MS.gene042580:CDS |
| CCTTGGTTGATTGACAACTT+GGG | 0.624028 | 6.3:+21213731 | None:intergenic |
| TCTTTCATTATAGGTCATGG+TGG | 0.629488 | 6.3:-21213225 | MS.gene042580:intron |
| ATGCGATGAATTCCCATCGA+AGG | 0.631172 | 6.3:+21212261 | None:intergenic |
| CAATTTCCACAAGTTATGAG+TGG | 0.631283 | 6.3:-21213882 | None:intergenic |
| AATCAACCAAGGGTTAGTGT+TGG | 0.641888 | 6.3:-21213720 | MS.gene042580:CDS |
| AATGGTAAAGAACTTAACAA+TGG | 0.647326 | 6.3:-21213771 | MS.gene042580:CDS |
| TCGTCAACTTGGTAGAGACA+CGG | 0.659420 | 6.3:-21212223 | MS.gene042580:CDS |
| TAGGTATAGAGCTTTGAAAG+GGG | 0.674735 | 6.3:+21213808 | None:intergenic |
| TTACACCTCCAACAACAAGA+GGG | 0.705196 | 6.3:+21213847 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAATGTTAATTAAAATCAA+TGG | + | chr6.3:21212670-21212689 | None:intergenic | 10.0% |
| !!! | AATTATTCTAAAAACTAAAT+TGG | - | chr6.3:21213034-21213053 | MS.gene042580:intron | 10.0% |
| !!! | TTTTTTATTTTTTTAACATC+AGG | - | chr6.3:21212918-21212937 | MS.gene042580:intron | 10.0% |
| !! | CTATAATTATTGAGTTTATT+TGG | + | chr6.3:21213243-21213262 | None:intergenic | 15.0% |
| !! | TCACAAACAAAATAAATAAA+TGG | + | chr6.3:21212998-21213017 | None:intergenic | 15.0% |
| !!! | AAATTTTGCTTCATATATTA+GGG | - | chr6.3:21213414-21213433 | MS.gene042580:intron | 15.0% |
| !! | AATTGAAACCTATTATTACA+TGG | - | chr6.3:21213510-21213529 | MS.gene042580:intron | 20.0% |
| !! | ATATACAACAAATTCAGTTA+TGG | + | chr6.3:21212313-21212332 | None:intergenic | 20.0% |
| !! | ATGTATAACCATGTAATAAT+AGG | + | chr6.3:21213521-21213540 | None:intergenic | 20.0% |
| !! | GAAAGAAATGAATTCAAATA+GGG | + | chr6.3:21212720-21212739 | None:intergenic | 20.0% |
| !! | GAATTCATTTCTTTCATTAT+AGG | - | chr6.3:21212725-21212744 | MS.gene042580:intron | 20.0% |
| !! | TATACAACAAATTCAGTTAT+GGG | + | chr6.3:21212312-21212331 | None:intergenic | 20.0% |
| !! | TGAAAGAAATGAATTCAAAT+AGG | + | chr6.3:21212721-21212740 | None:intergenic | 20.0% |
| !! | TGAAATATGTAAAGTATGAA+GGG | + | chr6.3:21213297-21213316 | None:intergenic | 20.0% |
| !! | TGATATATACTAATCCTAAT+AGG | - | chr6.3:21213458-21213477 | MS.gene042580:intron | 20.0% |
| !! | TTGAAATATGTAAAGTATGA+AGG | + | chr6.3:21213298-21213317 | None:intergenic | 20.0% |
| !!! | GAAATTTTGCTTCATATATT+AGG | - | chr6.3:21213413-21213432 | MS.gene042580:intron | 20.0% |
| !!! | TGCTAATGACAATTTATTTT+AGG | - | chr6.3:21213540-21213559 | MS.gene042580:intron | 20.0% |
| !!! | TGCTTATTTTAACATTCAAA+GGG | - | chr6.3:21213838-21213857 | MS.gene042580:CDS | 20.0% |
| !!! | TTATTTTTTTAACATCAGGT+TGG | - | chr6.3:21212922-21212941 | MS.gene042580:intron | 20.0% |
| ! | AATGGTAAAGAACTTAACAA+TGG | - | chr6.3:21212188-21212207 | MS.gene042580:CDS | 25.0% |
| ! | ATATACAGCAACAAAAATCA+TGG | - | chr6.3:21212483-21212502 | MS.gene042580:intron | 25.0% |
| ! | ATTTCTTTCATTATAGGTCA+TGG | - | chr6.3:21212731-21212750 | MS.gene042580:intron | 25.0% |
| ! | CTATGTTGTAAAAATGTGAT+GGG | - | chr6.3:21213178-21213197 | MS.gene042580:CDS | 25.0% |
| ! | GAAATATGTAAAGTATGAAG+GGG | + | chr6.3:21213296-21213315 | None:intergenic | 25.0% |
| ! | TAGGATTCAATTCATATACA+CGG | - | chr6.3:21213559-21213578 | MS.gene042580:intron | 25.0% |
| ! | TCTATGTTGTAAAAATGTGA+TGG | - | chr6.3:21213177-21213196 | MS.gene042580:CDS | 25.0% |
| ! | TTTGCAGAACTTTACAATTT+AGG | - | chr6.3:21213800-21213819 | MS.gene042580:CDS | 25.0% |
| !!! | AATCTCTAGTGTTGAAATTT+TGG | + | chr6.3:21213781-21213800 | None:intergenic | 25.0% |
| !!! | CTGCTTATTTTAACATTCAA+AGG | - | chr6.3:21213837-21213856 | MS.gene042580:CDS | 25.0% |
| !!! | GAATTGATGATTATTTTCAC+AGG | - | chr6.3:21213644-21213663 | MS.gene042580:intron | 25.0% |
| !!! | TCTCTTAATTTGTTCCTATT+AGG | + | chr6.3:21213475-21213494 | None:intergenic | 25.0% |
| GTTAAGTTCTTTACCATTGT+AGG | + | chr6.3:21212186-21212205 | None:intergenic | 30.0% | |
| GTTCAAGTAGAACAATTACT+AGG | + | chr6.3:21212698-21212717 | None:intergenic | 30.0% | |
| TATGATTAGATGCATGTGTA+AGG | + | chr6.3:21213104-21213123 | None:intergenic | 30.0% | |
| TCTTAGAAACTTCTATACTC+TGG | - | chr6.3:21212271-21212290 | MS.gene042580:CDS | 30.0% | |
| TGAACAAACATACCAAAAGT+AGG | + | chr6.3:21212974-21212993 | None:intergenic | 30.0% | |
| TTTAACATTCAAAGGGAACA+TGG | - | chr6.3:21213845-21213864 | MS.gene042580:CDS | 30.0% | |
| ! | TAGTGACAAGAATTTGAGAT+AGG | + | chr6.3:21212524-21212543 | None:intergenic | 30.0% |
| ! | TTTGTGATTTTTCGTCAACT+TGG | - | chr6.3:21213725-21213744 | MS.gene042580:CDS | 30.0% |
| !! | AGAAGTACAGTTCATGATTT+TGG | - | chr6.3:21213261-21213280 | MS.gene042580:intron | 30.0% |
| !! | ATAGGTATAGAGCTTTGAAA+GGG | + | chr6.3:21212155-21212174 | None:intergenic | 30.0% |
| !! | TATAGGTATAGAGCTTTGAA+AGG | + | chr6.3:21212156-21212175 | None:intergenic | 30.0% |
| !!! | AGTTCATGATTTTGGTTACA+AGG | - | chr6.3:21213269-21213288 | MS.gene042580:intron | 30.0% |
| !!! | GTTCATGATTTTGGTTACAA+GGG | - | chr6.3:21213270-21213289 | MS.gene042580:intron | 30.0% |
| AATTTCAGAAGACCAAGGTT+AGG | + | chr6.3:21213399-21213418 | None:intergenic | 35.0% | |
| ACTTCAATTACACCTAACCT+TGG | - | chr6.3:21213384-21213403 | MS.gene042580:intron | 35.0% | |
| AGCAAAATTTCAGAAGACCA+AGG | + | chr6.3:21213404-21213423 | None:intergenic | 35.0% | |
| ATGCCATGAAAACATGCTTA+TGG | - | chr6.3:21212837-21212856 | MS.gene042580:intron | 35.0% | |
| CACTTCTGTAGCAAAATCAA+AGG | + | chr6.3:21212575-21212594 | None:intergenic | 35.0% | |
| CCATTGTAGGAAACTCTTAT+AGG | + | chr6.3:21212173-21212192 | None:intergenic | 35.0% | |
| CCTATAAGAGTTTCCTACAA+TGG | - | chr6.3:21212170-21212189 | MS.gene042580:CDS | 35.0% | |
| GAAGATACTCCCTCAAATTT+GGG | + | chr6.3:21212785-21212804 | None:intergenic | 35.0% | |
| TCTTTCATTATAGGTCATGG+TGG | - | chr6.3:21212734-21212753 | MS.gene042580:intron | 35.0% | |
| TGAAGATACTCCCTCAAATT+TGG | + | chr6.3:21212786-21212805 | None:intergenic | 35.0% | |
| TGATGGGATCCATATGTAAA+AGG | - | chr6.3:21213194-21213213 | MS.gene042580:CDS | 35.0% | |
| TTTGCACTGTCAGTGTAAAA+GGG | + | chr6.3:21213220-21213239 | None:intergenic | 35.0% | |
| ! | AAGCCATAAGCATGTTTTCA+TGG | + | chr6.3:21212843-21212862 | None:intergenic | 35.0% |
| ! | ACTTTACAATTTAGGATCGC+CGG | - | chr6.3:21213808-21213827 | MS.gene042580:CDS | 35.0% |
| ! | GTAAAAGGGCCTTTTACATA+TGG | + | chr6.3:21213206-21213225 | None:intergenic | 35.0% |
| ! | TATTTTCACAGGTCATGAAG+TGG | - | chr6.3:21213655-21213674 | MS.gene042580:intron | 35.0% |
| !! | AGGTGTAATTGGTGATGTAT+TGG | - | chr6.3:21212127-21212146 | MS.gene042580:CDS | 35.0% |
| !! | TAGGTATAGAGCTTTGAAAG+GGG | + | chr6.3:21212154-21212173 | None:intergenic | 35.0% |
| ACTGATATTCCTGCAACTAC+TGG | - | chr6.3:21212947-21212966 | MS.gene042580:intron | 40.0% | |
| ATTACACCTCCAACAACAAG+AGG | + | chr6.3:21212116-21212135 | None:intergenic | 40.0% | |
| CCAAGTTGTCAATCAACCAA+GGG | - | chr6.3:21212229-21212248 | MS.gene042580:CDS | 40.0% | |
| CCCTAGTAACCCAAATTTGA+GGG | - | chr6.3:21212773-21212792 | MS.gene042580:intron | 40.0% | |
| CCTTGGTTGATTGACAACTT+GGG | + | chr6.3:21212231-21212250 | None:intergenic | 40.0% | |
| GTTTGCACTGTCAGTGTAAA+AGG | + | chr6.3:21213221-21213240 | None:intergenic | 40.0% | |
| TTAAAATAAGCAGCAGCAGC+CGG | + | chr6.3:21213830-21213849 | None:intergenic | 40.0% | |
| TTACACCTCCAACAACAAGA+GGG | + | chr6.3:21212115-21212134 | None:intergenic | 40.0% | |
| ! | AAATTTGGGTTACTAGGGCT+AGG | + | chr6.3:21212771-21212790 | None:intergenic | 40.0% |
| ! | AATCAACCAAGGGTTAGTGT+TGG | - | chr6.3:21212239-21212258 | MS.gene042580:CDS | 40.0% |
| ! | CCCTCAAATTTGGGTTACTA+GGG | + | chr6.3:21212776-21212795 | None:intergenic | 40.0% |
| ! | TCCCTCAAATTTGGGTTACT+AGG | + | chr6.3:21212777-21212796 | None:intergenic | 40.0% |
| !! | ATTTGAGGGAGTATCTTCAC+TGG | - | chr6.3:21212787-21212806 | MS.gene042580:intron | 40.0% |
| !! | CTTGTTGTTGGAGGTGTAAT+TGG | - | chr6.3:21212116-21212135 | MS.gene042580:CDS | 40.0% |
| AAAGTAGGTCCAGTAGTTGC+AGG | + | chr6.3:21212959-21212978 | None:intergenic | 45.0% | |
| ATGCGATGAATTCCCATCGA+AGG | + | chr6.3:21213701-21213720 | None:intergenic | 45.0% | |
| ATTCAAAGGGAACATGGCTC+TGG | - | chr6.3:21213851-21213870 | MS.gene042580:CDS | 45.0% | |
| CCCAAGTTGTCAATCAACCA+AGG | - | chr6.3:21212228-21212247 | MS.gene042580:CDS | 45.0% | |
| CCCTTGGTTGATTGACAACT+TGG | + | chr6.3:21212232-21212251 | None:intergenic | 45.0% | |
| GCCCTAGTAACCCAAATTTG+AGG | - | chr6.3:21212772-21212791 | MS.gene042580:intron | 45.0% | |
| GGTTGATTGACAACTTGGGA+AGG | + | chr6.3:21212227-21212246 | None:intergenic | 45.0% | |
| TCGTCAACTTGGTAGAGACA+CGG | - | chr6.3:21213736-21213755 | MS.gene042580:CDS | 45.0% | |
| ! | AGTAGAGACCCTCTTGTTGT+TGG | - | chr6.3:21212104-21212123 | MS.gene042580:CDS | 45.0% |
| ! | CAGTTGTAAAGCACTCTTGG+AGG | + | chr6.3:21213344-21213363 | None:intergenic | 45.0% |
| ! | CCTCAGTTGTAAAGCACTCT+TGG | + | chr6.3:21213347-21213366 | None:intergenic | 45.0% |
| ! | GCAACTACTGGACCTACTTT+TGG | - | chr6.3:21212959-21212978 | MS.gene042580:intron | 45.0% |
| !! | CCAAGAGTGCTTTACAACTG+AGG | - | chr6.3:21213344-21213363 | MS.gene042580:intron | 45.0% |
| !! | TTGAAATTTTGGCGCCAACC+TGG | + | chr6.3:21213770-21213789 | None:intergenic | 45.0% |
| ACACGGTTTATGCTCCAGGT+TGG | - | chr6.3:21213753-21213772 | MS.gene042580:CDS | 50.0% | |
| AGAGACACGGTTTATGCTCC+AGG | - | chr6.3:21213749-21213768 | MS.gene042580:CDS | 50.0% | |
| GAAGGTCGTGGACTCTCATA+AGG | + | chr6.3:21213683-21213702 | None:intergenic | 50.0% | |
| TCTCCACCAACACTAACCCT+TGG | + | chr6.3:21212248-21212267 | None:intergenic | 50.0% | |
| TGAATTCCCATCGAAGGTCG+TGG | + | chr6.3:21213695-21213714 | None:intergenic | 50.0% | |
| TTACTAGGGCTAGGTGCATC+TGG | + | chr6.3:21212762-21212781 | None:intergenic | 50.0% | |
| ! | CAACCAAGGGTTAGTGTTGG+TGG | - | chr6.3:21212242-21212261 | MS.gene042580:CDS | 50.0% |
| !! | AACATGGCTCTGGTGGAAGA+AGG | - | chr6.3:21213861-21213880 | MS.gene042580:CDS | 50.0% |
| !! | AGAGACCCTCTTGTTGTTGG+AGG | - | chr6.3:21212107-21212126 | MS.gene042580:CDS | 50.0% |
| GAGAGTCCACGACCTTCGAT+GGG | - | chr6.3:21213686-21213705 | MS.gene042580:intron | 55.0% | |
| TGAGAGTCCACGACCTTCGA+TGG | - | chr6.3:21213685-21213704 | MS.gene042580:intron | 55.0% | |
| !! | CAAAGGGAACATGGCTCTGG+TGG | - | chr6.3:21213854-21213873 | MS.gene042580:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.3 | gene | 21212092 | 21213889 | 21212092 | ID=MS.gene042580 |
| chr6.3 | mRNA | 21212092 | 21213889 | 21212092 | ID=MS.gene042580.t1;Parent=MS.gene042580 |
| chr6.3 | exon | 21213689 | 21213889 | 21213689 | ID=MS.gene042580.t1.exon1;Parent=MS.gene042580.t1 |
| chr6.3 | CDS | 21213689 | 21213889 | 21213689 | ID=cds.MS.gene042580.t1;Parent=MS.gene042580.t1 |
| chr6.3 | exon | 21213173 | 21213234 | 21213173 | ID=MS.gene042580.t1.exon2;Parent=MS.gene042580.t1 |
| chr6.3 | CDS | 21213173 | 21213234 | 21213173 | ID=cds.MS.gene042580.t1;Parent=MS.gene042580.t1 |
| chr6.3 | exon | 21213001 | 21213041 | 21213001 | ID=MS.gene042580.t1.exon3;Parent=MS.gene042580.t1 |
| chr6.3 | CDS | 21213001 | 21213041 | 21213001 | ID=cds.MS.gene042580.t1;Parent=MS.gene042580.t1 |
| chr6.3 | exon | 21212092 | 21212315 | 21212092 | ID=MS.gene042580.t1.exon4;Parent=MS.gene042580.t1 |
| chr6.3 | CDS | 21212092 | 21212315 | 21212092 | ID=cds.MS.gene042580.t1;Parent=MS.gene042580.t1 |
| Gene Sequence |
| Protein sequence |
