Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51950.t1 | AEO16612.1 | 100 | 176 | 0 | 0 | 1 | 176 | 1 | 176 | 1.10E-99 | 372.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51950.t1 | Q93WI9 | 73.3 | 172 | 46 | 0 | 2 | 173 | 4 | 175 | 8.9e-74 | 277.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51950.t1 | G3FCS8 | 100.0 | 176 | 0 | 0 | 1 | 176 | 1 | 176 | 7.9e-100 | 372.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049232 | MS.gene51950 | 0.838465 | 2.83E-57 | -1.69E-46 |
| MS.gene049552 | MS.gene51950 | 0.801262 | 9.78E-49 | -1.69E-46 |
| MS.gene050496 | MS.gene51950 | 0.809509 | 1.83E-50 | -1.69E-46 |
| MS.gene056504 | MS.gene51950 | 0.817875 | 2.63E-52 | -1.69E-46 |
| MS.gene05787 | MS.gene51950 | 0.807353 | 5.27E-50 | -1.69E-46 |
| MS.gene059367 | MS.gene51950 | 0.808658 | 2.78E-50 | -1.69E-46 |
| MS.gene060595 | MS.gene51950 | -0.801359 | 9.35E-49 | -1.69E-46 |
| MS.gene060778 | MS.gene51950 | 0.845941 | 2.97E-59 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene35397 | MS.gene51950 | PPI |
| MS.gene95893 | MS.gene51950 | PPI |
| MS.gene042580 | MS.gene51950 | PPI |
| MS.gene51913 | MS.gene51950 | PPI |
| MS.gene43049 | MS.gene51950 | PPI |
| MS.gene51950 | MS.gene93778 | PPI |
| MS.gene62616 | MS.gene51950 | PPI |
| MS.gene98252 | MS.gene51950 | PPI |
| MS.gene51950 | MS.gene040147 | PPI |
| MS.gene000759 | MS.gene51950 | PPI |
| MS.gene51950 | MS.gene034467 | PPI |
| MS.gene51950 | MS.gene35397 | PPI |
| MS.gene034467 | MS.gene51950 | PPI |
| MS.gene94652 | MS.gene51950 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51950.t1 | MTR_7g084970 | 98.295 | 176 | 3 | 0 | 1 | 176 | 1 | 176 | 2.14e-128 | 357 |
| MS.gene51950.t1 | MTR_7g085020 | 77.714 | 175 | 39 | 0 | 2 | 176 | 3 | 177 | 4.50e-102 | 291 |
| MS.gene51950.t1 | MTR_6g033040 | 74.566 | 173 | 44 | 0 | 1 | 173 | 1 | 173 | 3.80e-95 | 273 |
| MS.gene51950.t1 | MTR_7g006630 | 72.024 | 168 | 46 | 1 | 7 | 173 | 2 | 169 | 6.42e-86 | 250 |
| MS.gene51950.t1 | MTR_7g006690 | 68.966 | 174 | 53 | 1 | 1 | 173 | 1 | 174 | 2.48e-85 | 249 |
| MS.gene51950.t1 | MTR_0020s0120 | 59.639 | 166 | 67 | 0 | 8 | 173 | 7 | 172 | 9.52e-74 | 219 |
| MS.gene51950.t1 | MTR_7g085040 | 61.250 | 160 | 61 | 1 | 14 | 173 | 11 | 169 | 2.54e-70 | 210 |
| MS.gene51950.t1 | MTR_7g104460 | 57.471 | 174 | 73 | 1 | 1 | 173 | 1 | 174 | 7.89e-69 | 207 |
| MS.gene51950.t1 | MTR_2g086270 | 56.548 | 168 | 72 | 1 | 7 | 173 | 6 | 173 | 1.07e-67 | 204 |
| MS.gene51950.t1 | MTR_0020s0120 | 56.627 | 166 | 65 | 1 | 8 | 173 | 7 | 165 | 8.54e-67 | 201 |
| MS.gene51950.t1 | MTR_1g060190 | 52.727 | 165 | 76 | 1 | 1 | 163 | 1 | 165 | 1.27e-62 | 191 |
| MS.gene51950.t1 | MTR_8g106840 | 50.575 | 174 | 84 | 2 | 1 | 173 | 1 | 173 | 1.45e-56 | 176 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51950.t1 | AT1G65480 | 71.098 | 173 | 50 | 0 | 1 | 173 | 45 | 217 | 1.15e-91 | 266 |
| MS.gene51950.t1 | AT1G65480 | 71.098 | 173 | 50 | 0 | 1 | 173 | 1 | 173 | 1.65e-91 | 264 |
| MS.gene51950.t1 | AT4G20370 | 68.208 | 173 | 55 | 0 | 1 | 173 | 1 | 173 | 2.62e-85 | 248 |
| MS.gene51950.t1 | AT5G03840 | 58.333 | 168 | 67 | 2 | 8 | 173 | 11 | 177 | 7.73e-67 | 202 |
| MS.gene51950.t1 | AT5G62040 | 56.970 | 165 | 69 | 2 | 7 | 169 | 6 | 170 | 1.72e-66 | 201 |
| MS.gene51950.t1 | AT2G27550 | 56.000 | 175 | 75 | 2 | 1 | 173 | 1 | 175 | 3.13e-66 | 200 |
| MS.gene51950.t1 | AT1G18100 | 49.133 | 173 | 85 | 2 | 3 | 173 | 2 | 173 | 2.39e-54 | 170 |
Find 58 sgRNAs with CRISPR-Local
Find 113 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTCTACATTGTTGATGAAAT+AGG | 0.231768 | 7.3:+23632748 | None:intergenic |
| CTGGCTGTAGGGCGTGTAAT+AGG | 0.236534 | 7.3:-23634289 | MS.gene51950:CDS |
| GAGCTCAAACCTTCTCAAAT+TGG | 0.266960 | 7.3:-23634190 | MS.gene51950:CDS |
| TCCTTAAAAGTGGGGTTACT+TGG | 0.279792 | 7.3:+23633962 | None:intergenic |
| TGGCTGTAGGGCGTGTAATA+GGG | 0.298942 | 7.3:-23634288 | MS.gene51950:CDS |
| GAAAGGCCACGACCCACTTC+GGG | 0.356462 | 7.3:-23632792 | MS.gene51950:CDS |
| TTACTTGGGCTAGGTGAATC+AGG | 0.383636 | 7.3:+23633977 | None:intergenic |
| TTTGCTGAACTCTACAATCT+TGG | 0.383955 | 7.3:-23632678 | MS.gene51950:CDS |
| AAAGTGACTTCAGTGGTTCC+TGG | 0.411425 | 7.3:+23633814 | None:intergenic |
| TGTCAAAGGGAGAGTGGCTC+TGG | 0.412838 | 7.3:-23632627 | MS.gene51950:CDS |
| AGGTTGGTGACTGATATTCC+AGG | 0.439180 | 7.3:-23633832 | MS.gene51950:CDS |
| GGTAATAAAGATGTGAATAA+TGG | 0.441855 | 7.3:-23634217 | MS.gene51950:CDS |
| GTTTCCACCAACACTCACTC+TGG | 0.463855 | 7.3:+23634159 | None:intergenic |
| TGAAAGGCCACGACCCACTT+CGG | 0.476912 | 7.3:-23632793 | MS.gene51950:CDS |
| TCATCAACAATGTAGACAAA+GGG | 0.476961 | 7.3:-23632742 | MS.gene51950:CDS |
| TTAATATAATAATTATCTAA+AGG | 0.478344 | 7.3:+23632596 | None:intergenic |
| TTGAAGAAGACAGCAGCAAC+AGG | 0.481772 | 7.3:+23632651 | None:intergenic |
| CTGTCTTCTTCAATTGTCAA+AGG | 0.484561 | 7.3:-23632641 | MS.gene51950:CDS |
| GGAACCACTGAAGTCACTTT+CGG | 0.499071 | 7.3:-23633811 | MS.gene51950:intron |
| CAACCCAGAGTGAGTGTTGG+TGG | 0.502018 | 7.3:-23634163 | MS.gene51950:CDS |
| CCTTAAAAGTGGGGTTACTT+GGG | 0.502208 | 7.3:+23633963 | None:intergenic |
| AGACAAAGGGTTTATGCTCC+AGG | 0.503769 | 7.3:-23632729 | MS.gene51950:CDS |
| ATTCCTCTCCGAGTGACCTA+TGG | 0.511136 | 7.3:-23634238 | MS.gene51950:CDS |
| TGGATCCCCGAAGTGGGTCG+TGG | 0.516083 | 7.3:+23632786 | None:intergenic |
| TGTCTTCTTCAATTGTCAAA+GGG | 0.520471 | 7.3:-23632640 | MS.gene51950:CDS |
| GTGGAGGTACTCCTTAAAAG+TGG | 0.534289 | 7.3:+23633952 | None:intergenic |
| GTAGGAATCCACTGGCTGTA+GGG | 0.534446 | 7.3:-23634300 | MS.gene51950:CDS |
| CTTTATTACCATAGGTCACT+CGG | 0.538470 | 7.3:+23634230 | None:intergenic |
| ATTCACATCTTTATTACCAT+AGG | 0.539018 | 7.3:+23634222 | None:intergenic |
| TTCATCAACAATGTAGACAA+AGG | 0.541638 | 7.3:-23632743 | MS.gene51950:CDS |
| GAGAGGAATGGAACTTTCAA+AGG | 0.547771 | 7.3:+23634252 | None:intergenic |
| GGCTGTAGGGCGTGTAATAG+GGG | 0.552217 | 7.3:-23634287 | MS.gene51950:CDS |
| TTCAATTGTCAAAGGGAGAG+TGG | 0.552986 | 7.3:-23632633 | MS.gene51950:CDS |
| AAAGTGGGGTTACTTGGGCT+AGG | 0.558426 | 7.3:+23633968 | None:intergenic |
| TTTCCACCAACACTCACTCT+GGG | 0.558856 | 7.3:+23634160 | None:intergenic |
| TGATTTGCACATAGGTAATG+AGG | 0.563045 | 7.3:-23632826 | MS.gene51950:intron |
| CGGTAGCAGTAGGAATCCAC+TGG | 0.566544 | 7.3:-23634308 | MS.gene51950:CDS |
| GGTTGATTGCCAATTTGAGA+AGG | 0.568164 | 7.3:+23634181 | None:intergenic |
| TGGAGGTACTCCTTAAAAGT+GGG | 0.569324 | 7.3:+23633953 | None:intergenic |
| ATGAGGTTGTAAATTATGAA+AGG | 0.570056 | 7.3:-23632809 | MS.gene51950:CDS |
| CACATATGGCCGGTAGCAGT+AGG | 0.586122 | 7.3:-23634318 | None:intergenic |
| TGTAAATTACTAGGGTGTAG+AGG | 0.586142 | 7.3:+23634125 | None:intergenic |
| ATAGGTCACTCGGAGAGGAA+TGG | 0.588640 | 7.3:+23634240 | None:intergenic |
| AACTGAGAACCACATATGGC+CGG | 0.594659 | 7.3:-23634328 | None:intergenic |
| CAAAGGGAGAGTGGCTCTGG+CGG | 0.601132 | 7.3:-23632624 | MS.gene51950:CDS |
| AGTAGGAATCCACTGGCTGT+AGG | 0.611301 | 7.3:-23634301 | MS.gene51950:CDS |
| AAACGATGGATCCCCGAAGT+GGG | 0.619464 | 7.3:+23632780 | None:intergenic |
| CAGTGGATTCCTACTGCTAC+CGG | 0.625296 | 7.3:+23634309 | None:intergenic |
| AAAGGCCACGACCCACTTCG+GGG | 0.626977 | 7.3:-23632791 | MS.gene51950:CDS |
| GAAACGATGGATCCCCGAAG+TGG | 0.627096 | 7.3:+23632779 | None:intergenic |
| ATTACACGCCCTACAGCCAG+TGG | 0.629675 | 7.3:+23634292 | None:intergenic |
| TTACCATAGGTCACTCGGAG+AGG | 0.633443 | 7.3:+23634235 | None:intergenic |
| ATAGGACAAACACGAAACGA+TGG | 0.633568 | 7.3:+23632766 | None:intergenic |
| ATTGATTTACTCACCAGTGG+AGG | 0.648865 | 7.3:+23633936 | None:intergenic |
| AAAGGGTTTATGCTCCAGGA+TGG | 0.651446 | 7.3:-23632725 | MS.gene51950:CDS |
| GGAGGTACTCCTTAAAAGTG+GGG | 0.684138 | 7.3:+23633954 | None:intergenic |
| CATACCGAAAGTGACTTCAG+TGG | 0.687337 | 7.3:+23633807 | None:intergenic |
| AATCAACCCAGAGTGAGTGT+TGG | 0.706365 | 7.3:-23634166 | MS.gene51950:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGAAGAAATTTTAATTTTTT+TGG | - | chr7.3:23633718-23633737 | MS.gene51950:intron | 10.0% |
| !! | ACTATATAATGTAAATTACT+AGG | + | chr7.3:23632808-23632827 | None:intergenic | 15.0% |
| !! | CTATATAATGTAAATTACTA+GGG | + | chr7.3:23632807-23632826 | None:intergenic | 15.0% |
| !! | TAACTTCAAAATATGAAAAA+AGG | - | chr7.3:23633441-23633460 | MS.gene51950:intron | 15.0% |
| !! | TATTATTTAACAAAAGTCTT+AGG | + | chr7.3:23633038-23633057 | None:intergenic | 15.0% |
| !!! | GTTTTTTATAAATTGCAAAT+TGG | + | chr7.3:23633498-23633517 | None:intergenic | 15.0% |
| !!! | TGACTTTTTACAAATAAATA+GGG | - | chr7.3:23633216-23633235 | MS.gene51950:intron | 15.0% |
| !! | AATAAATGAATATGCTACAA+TGG | + | chr7.3:23633928-23633947 | None:intergenic | 20.0% |
| !! | AATCAAACTCAAAATTAACT+AGG | + | chr7.3:23634076-23634095 | None:intergenic | 20.0% |
| !! | AGAAACTACATTATGATAAT+AGG | + | chr7.3:23632889-23632908 | None:intergenic | 20.0% |
| !! | ATCAAACTCAAAATTAACTA+GGG | + | chr7.3:23634075-23634094 | None:intergenic | 20.0% |
| !! | GCAATTTATAAAAAACTCAT+AGG | - | chr7.3:23633502-23633521 | MS.gene51950:intron | 20.0% |
| !!! | AATTTTCAAAAACTGCAAAT+TGG | + | chr7.3:23633530-23633549 | None:intergenic | 20.0% |
| !!! | ATTTCTTGCTCTATTTTTAT+AGG | - | chr7.3:23632910-23632929 | MS.gene51950:intron | 20.0% |
| !!! | GCAGTTTTTGAAAATTTAAA+GGG | - | chr7.3:23633534-23633553 | MS.gene51950:intron | 20.0% |
| !!! | GTGACTTTTTACAAATAAAT+AGG | - | chr7.3:23633215-23633234 | MS.gene51950:intron | 20.0% |
| !!! | TGCAGTTTTTGAAAATTTAA+AGG | - | chr7.3:23633533-23633552 | MS.gene51950:intron | 20.0% |
| !!! | TTTTTCATTTCTTAGATGTT+TGG | + | chr7.3:23633900-23633919 | None:intergenic | 20.0% |
| ! | AAATGAACAATTCTACCAAT+AGG | + | chr7.3:23634034-23634053 | None:intergenic | 25.0% |
| ! | ATAATATACCAAGAACTCAA+TGG | - | chr7.3:23633174-23633193 | MS.gene51950:intron | 25.0% |
| ! | ATGAAATTTCAGAAAAGTTG+AGG | - | chr7.3:23633415-23633434 | MS.gene51950:intron | 25.0% |
| ! | ATGAGGTTGTAAATTATGAA+AGG | - | chr7.3:23634112-23634131 | MS.gene51950:intron | 25.0% |
| ! | ATTCACATCTTTATTACCAT+AGG | + | chr7.3:23632702-23632721 | None:intergenic | 25.0% |
| ! | CACTTTCAAATTATGCAAAT+TGG | + | chr7.3:23633651-23633670 | None:intergenic | 25.0% |
| ! | GGTAATAAAGATGTGAATAA+TGG | - | chr7.3:23632704-23632723 | MS.gene51950:CDS | 25.0% |
| ! | TAATATACCAAGAACTCAAT+GGG | - | chr7.3:23633175-23633194 | MS.gene51950:intron | 25.0% |
| ! | TATTAAAGAGAAAGACTACA+TGG | - | chr7.3:23634003-23634022 | MS.gene51950:intron | 25.0% |
| ! | TGAAATTTCAGAAAAGTTGA+GGG | - | chr7.3:23633416-23633435 | MS.gene51950:intron | 25.0% |
| !! | CATTTCTAATTTTTCTTGCT+TGG | - | chr7.3:23633349-23633368 | MS.gene51950:intron | 25.0% |
| !! | GGTTTTTACCAAAATCATAT+TGG | + | chr7.3:23633816-23633835 | None:intergenic | 25.0% |
| !!! | TCTATTTTTATAGGTTATGG+TGG | - | chr7.3:23632919-23632938 | MS.gene51950:intron | 25.0% |
| !!! | TGCTCTATTTTTATAGGTTA+TGG | - | chr7.3:23632916-23632935 | MS.gene51950:intron | 25.0% |
| !!! | TTTTTGAAGTTCTAATGCAT+TGG | + | chr7.3:23633837-23633856 | None:intergenic | 25.0% |
| AAACTCAAAATTAACTAGGG+TGG | + | chr7.3:23634072-23634091 | None:intergenic | 30.0% | |
| CTCTGAATTTGACAAAACTA+TGG | + | chr7.3:23633872-23633891 | None:intergenic | 30.0% | |
| CTCTTCTCTCAATAAACTTT+AGG | - | chr7.3:23633069-23633088 | MS.gene51950:intron | 30.0% | |
| TCATCAACAATGTAGACAAA+GGG | - | chr7.3:23634179-23634198 | MS.gene51950:CDS | 30.0% | |
| TCTCTCAATAAACTTTAGGT+TGG | - | chr7.3:23633073-23633092 | MS.gene51950:intron | 30.0% | |
| TGTCTTCTTCAATTGTCAAA+GGG | - | chr7.3:23634281-23634300 | MS.gene51950:CDS | 30.0% | |
| TTCATCAACAATGTAGACAA+AGG | - | chr7.3:23634178-23634197 | MS.gene51950:CDS | 30.0% | |
| ! | AAGTAATCCAAGTTTAAGAC+TGG | + | chr7.3:23633393-23633412 | None:intergenic | 30.0% |
| ! | ACATGAATCTGTTACTTGTT+AGG | - | chr7.3:23633147-23633166 | MS.gene51950:intron | 30.0% |
| ! | GTCTACATTGTTGATGAAAT+AGG | + | chr7.3:23634176-23634195 | None:intergenic | 30.0% |
| !! | AGTTTGATTGATTTGCACAT+AGG | - | chr7.3:23634087-23634106 | MS.gene51950:intron | 30.0% |
| ACCAAAATCATATTGGCATG+TGG | + | chr7.3:23633809-23633828 | None:intergenic | 35.0% | |
| ATCACATTACTGAGTGTGTT+TGG | - | chr7.3:23633258-23633277 | MS.gene51950:intron | 35.0% | |
| CTGTCTTCTTCAATTGTCAA+AGG | - | chr7.3:23634280-23634299 | MS.gene51950:CDS | 35.0% | |
| CTTTATTACCATAGGTCACT+CGG | + | chr7.3:23632694-23632713 | None:intergenic | 35.0% | |
| GGTAAATCATAAGCAGCATA+AGG | + | chr7.3:23633017-23633036 | None:intergenic | 35.0% | |
| TGATTCTCCAGTCTTAAACT+TGG | - | chr7.3:23633383-23633402 | MS.gene51950:intron | 35.0% | |
| TGTAAATTACTAGGGTGTAG+AGG | + | chr7.3:23632799-23632818 | None:intergenic | 35.0% | |
| TTTGCTGAACTCTACAATCT+TGG | - | chr7.3:23634243-23634262 | MS.gene51950:CDS | 35.0% | |
| ! | ACCACATGCCAATATGATTT+TGG | - | chr7.3:23633805-23633824 | MS.gene51950:intron | 35.0% |
| ! | GTAATTGATTTACTCACCAG+TGG | + | chr7.3:23632991-23633010 | None:intergenic | 35.0% |
| ! | TGATTTGCACATAGGTAATG+AGG | - | chr7.3:23634095-23634114 | MS.gene51950:intron | 35.0% |
| ATAGGACAAACACGAAACGA+TGG | + | chr7.3:23634158-23634177 | None:intergenic | 40.0% | |
| ATAGTTGCCCATTGAGTTCT+TGG | + | chr7.3:23633185-23633204 | None:intergenic | 40.0% | |
| CCTTAAAAGTGGGGTTACTT+GGG | + | chr7.3:23632961-23632980 | None:intergenic | 40.0% | |
| GACTACATGGTTATGCCTAT+TGG | - | chr7.3:23634016-23634035 | MS.gene51950:intron | 40.0% | |
| GAGAGGAATGGAACTTTCAA+AGG | + | chr7.3:23632672-23632691 | None:intergenic | 40.0% | |
| GAGCTCAAACCTTCTCAAAT+TGG | - | chr7.3:23632731-23632750 | MS.gene51950:CDS | 40.0% | |
| GGTTGATTGCCAATTTGAGA+AGG | + | chr7.3:23632743-23632762 | None:intergenic | 40.0% | |
| TCCTTAAAAGTGGGGTTACT+TGG | + | chr7.3:23632962-23632981 | None:intergenic | 40.0% | |
| TTCAATTGTCAAAGGGAGAG+TGG | - | chr7.3:23634288-23634307 | MS.gene51950:CDS | 40.0% | |
| ! | ATTGATTTACTCACCAGTGG+AGG | + | chr7.3:23632988-23633007 | None:intergenic | 40.0% |
| ! | TTGAAATTTTGTCGCCATCC+TGG | + | chr7.3:23634213-23634232 | None:intergenic | 40.0% |
| !! | TGGAGGTACTCCTTAAAAGT+GGG | + | chr7.3:23632971-23632990 | None:intergenic | 40.0% |
| AAAGGGTTTATGCTCCAGGA+TGG | - | chr7.3:23634196-23634215 | MS.gene51950:CDS | 45.0% | |
| AAAGTGACTTCAGTGGTTCC+TGG | + | chr7.3:23633110-23633129 | None:intergenic | 45.0% | |
| AATCAACCCAGAGTGAGTGT+TGG | - | chr7.3:23632755-23632774 | MS.gene51950:CDS | 45.0% | |
| AGACAAAGGGTTTATGCTCC+AGG | - | chr7.3:23634192-23634211 | MS.gene51950:CDS | 45.0% | |
| CATACCGAAAGTGACTTCAG+TGG | + | chr7.3:23633117-23633136 | None:intergenic | 45.0% | |
| TTGAAGAAGACAGCAGCAAC+AGG | + | chr7.3:23634273-23634292 | None:intergenic | 45.0% | |
| TTTCCACCAACACTCACTCT+GGG | + | chr7.3:23632764-23632783 | None:intergenic | 45.0% | |
| ! | CACTGAAGTCACTTTCGGTA+TGG | - | chr7.3:23633115-23633134 | MS.gene51950:intron | 45.0% |
| ! | GGAACCACTGAAGTCACTTT+CGG | - | chr7.3:23633110-23633129 | MS.gene51950:intron | 45.0% |
| ! | TTACTTGGGCTAGGTGAATC+AGG | + | chr7.3:23632947-23632966 | None:intergenic | 45.0% |
| !! | AGGTTGGTGACTGATATTCC+AGG | - | chr7.3:23633089-23633108 | MS.gene51950:intron | 45.0% |
| !! | CCCAAGTAACCCCACTTTTA+AGG | - | chr7.3:23632958-23632977 | MS.gene51950:intron | 45.0% |
| !! | GGAGGTACTCCTTAAAAGTG+GGG | + | chr7.3:23632970-23632989 | None:intergenic | 45.0% |
| !! | GTGGAGGTACTCCTTAAAAG+TGG | + | chr7.3:23632972-23632991 | None:intergenic | 45.0% |
| !!! | CTTTTAAGGAGTACCTCCAC+TGG | - | chr7.3:23632972-23632991 | MS.gene51950:intron | 45.0% |
| !!! | ATTATTAAAATTTTGAAATT+TGG | + | chr7.3:23633590-23633609 | None:intergenic | 5.0% |
| !!! | CAAAATTTTAATAATATATA+GGG | - | chr7.3:23633595-23633614 | MS.gene51950:intron | 5.0% |
| !!! | TACAATTTTTAAAAATTATA+GGG | - | chr7.3:23633471-23633490 | MS.gene51950:intron | 5.0% |
| !!! | TATTTTTAAAAAATACAAAT+TGG | + | chr7.3:23633561-23633580 | None:intergenic | 5.0% |
| !!! | TCAAAATTTTAATAATATAT+AGG | - | chr7.3:23633594-23633613 | MS.gene51950:intron | 5.0% |
| !!! | TGTAATTTTTTTTAAAATAT+AGG | - | chr7.3:23633623-23633642 | MS.gene51950:intron | 5.0% |
| !!! | TTACAATTTTTAAAAATTAT+AGG | - | chr7.3:23633470-23633489 | MS.gene51950:intron | 5.0% |
| !!! | TTGTATTTTTTAAAAATATA+GGG | - | chr7.3:23633563-23633582 | MS.gene51950:intron | 5.0% |
| !!! | TTTGTATTTTTTAAAAATAT+AGG | - | chr7.3:23633562-23633581 | MS.gene51950:intron | 5.0% |
| AAACGATGGATCCCCGAAGT+GGG | + | chr7.3:23634144-23634163 | None:intergenic | 50.0% | |
| AAAGTGGGGTTACTTGGGCT+AGG | + | chr7.3:23632956-23632975 | None:intergenic | 50.0% | |
| ATAGGTCACTCGGAGAGGAA+TGG | + | chr7.3:23632684-23632703 | None:intergenic | 50.0% | |
| ATTCCTCTCCGAGTGACCTA+TGG | - | chr7.3:23632683-23632702 | MS.gene51950:CDS | 50.0% | |
| GTTTCCACCAACACTCACTC+TGG | + | chr7.3:23632765-23632784 | None:intergenic | 50.0% | |
| TGGCTGTAGGGCGTGTAATA+GGG | - | chr7.3:23632633-23632652 | MS.gene51950:CDS | 50.0% | |
| TTACCATAGGTCACTCGGAG+AGG | + | chr7.3:23632689-23632708 | None:intergenic | 50.0% | |
| ! | AGTAGGAATCCACTGGCTGT+AGG | - | chr7.3:23632620-23632639 | MS.gene51950:CDS | 50.0% |
| ! | CAGTGGATTCCTACTGCTAC+CGG | + | chr7.3:23632615-23632634 | None:intergenic | 50.0% |
| ! | GTAGGAATCCACTGGCTGTA+GGG | - | chr7.3:23632621-23632640 | MS.gene51950:CDS | 50.0% |
| ATTACACGCCCTACAGCCAG+TGG | + | chr7.3:23632632-23632651 | None:intergenic | 55.0% | |
| CGGTAGCAGTAGGAATCCAC+TGG | - | chr7.3:23632613-23632632 | MS.gene51950:CDS | 55.0% | |
| CTGGCTGTAGGGCGTGTAAT+AGG | - | chr7.3:23632632-23632651 | MS.gene51950:CDS | 55.0% | |
| GAAACGATGGATCCCCGAAG+TGG | + | chr7.3:23634145-23634164 | None:intergenic | 55.0% | |
| GGCTGTAGGGCGTGTAATAG+GGG | - | chr7.3:23632634-23632653 | MS.gene51950:CDS | 55.0% | |
| TGAAAGGCCACGACCCACTT+CGG | - | chr7.3:23634128-23634147 | MS.gene51950:intron | 55.0% | |
| TGTCAAAGGGAGAGTGGCTC+TGG | - | chr7.3:23634294-23634313 | MS.gene51950:CDS | 55.0% | |
| !! | CAACCCAGAGTGAGTGTTGG+TGG | - | chr7.3:23632758-23632777 | MS.gene51950:CDS | 55.0% |
| AAAGGCCACGACCCACTTCG+GGG | - | chr7.3:23634130-23634149 | MS.gene51950:intron | 60.0% | |
| GAAAGGCCACGACCCACTTC+GGG | - | chr7.3:23634129-23634148 | MS.gene51950:intron | 60.0% | |
| !! | CAAAGGGAGAGTGGCTCTGG+CGG | - | chr7.3:23634297-23634316 | MS.gene51950:CDS | 60.0% |
| TGGATCCCCGAAGTGGGTCG+TGG | + | chr7.3:23634138-23634157 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 23632608 | 23634335 | 23632608 | ID=MS.gene51950 |
| chr7.3 | mRNA | 23632608 | 23634335 | 23632608 | ID=MS.gene51950.t1;Parent=MS.gene51950 |
| chr7.3 | exon | 23634135 | 23634335 | 23634135 | ID=MS.gene51950.t1.exon1;Parent=MS.gene51950.t1 |
| chr7.3 | CDS | 23634135 | 23634335 | 23634135 | ID=cds.MS.gene51950.t1;Parent=MS.gene51950.t1 |
| chr7.3 | exon | 23633950 | 23634011 | 23633950 | ID=MS.gene51950.t1.exon2;Parent=MS.gene51950.t1 |
| chr7.3 | CDS | 23633950 | 23634011 | 23633950 | ID=cds.MS.gene51950.t1;Parent=MS.gene51950.t1 |
| chr7.3 | exon | 23633812 | 23633852 | 23633812 | ID=MS.gene51950.t1.exon3;Parent=MS.gene51950.t1 |
| chr7.3 | CDS | 23633812 | 23633852 | 23633812 | ID=cds.MS.gene51950.t1;Parent=MS.gene51950.t1 |
| chr7.3 | exon | 23632608 | 23632834 | 23632608 | ID=MS.gene51950.t1.exon4;Parent=MS.gene51950.t1 |
| chr7.3 | CDS | 23632608 | 23632834 | 23632608 | ID=cds.MS.gene51950.t1;Parent=MS.gene51950.t1 |
| Gene Sequence |
| Protein sequence |
