Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31079.t1 | KEH39468.1 | 85.4 | 412 | 48 | 3 | 1 | 412 | 1 | 400 | 1.90E-174 | 622.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31079.t1 | Q9C690 | 34.8 | 408 | 205 | 10 | 5 | 405 | 12 | 365 | 8.9e-40 | 166.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31079.t1 | A0A072VDF9 | 85.4 | 412 | 48 | 3 | 1 | 412 | 1 | 400 | 1.4e-174 | 622.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene31079.t1 | TF | bHLH |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene31079 | 0.823321 | 1.48E-53 | -1.69E-46 |
| MS.gene049159 | MS.gene31079 | 0.817268 | 3.60E-52 | -1.69E-46 |
| MS.gene049501 | MS.gene31079 | 0.834382 | 3.10E-56 | -1.69E-46 |
| MS.gene050156 | MS.gene31079 | 0.817916 | 2.57E-52 | -1.69E-46 |
| MS.gene050442 | MS.gene31079 | 0.817315 | 3.52E-52 | -1.69E-46 |
| MS.gene050844 | MS.gene31079 | 0.80802 | 3.80E-50 | -1.69E-46 |
| MS.gene051180 | MS.gene31079 | 0.80109 | 1.06E-48 | -1.69E-46 |
| MS.gene051247 | MS.gene31079 | 0.812213 | 4.75E-51 | -1.69E-46 |
| MS.gene051388 | MS.gene31079 | 0.820363 | 7.14E-53 | -1.69E-46 |
| MS.gene052042 | MS.gene31079 | 0.887428 | 1.44E-72 | -1.69E-46 |
| MS.gene052323 | MS.gene31079 | 0.80052 | 1.39E-48 | -1.69E-46 |
| MS.gene052611 | MS.gene31079 | 0.800295 | 1.54E-48 | -1.69E-46 |
| MS.gene052773 | MS.gene31079 | 0.829866 | 4.05E-55 | -1.69E-46 |
| MS.gene052863 | MS.gene31079 | 0.838117 | 3.48E-57 | -1.69E-46 |
| MS.gene052896 | MS.gene31079 | 0.846419 | 2.20E-59 | -1.69E-46 |
| MS.gene053008 | MS.gene31079 | 0.800376 | 1.48E-48 | -1.69E-46 |
| MS.gene054236 | MS.gene31079 | 0.820781 | 5.72E-53 | -1.69E-46 |
| MS.gene054467 | MS.gene31079 | 0.86832 | 7.13E-66 | -1.69E-46 |
| MS.gene054468 | MS.gene31079 | 0.823932 | 1.06E-53 | -1.69E-46 |
| MS.gene054472 | MS.gene31079 | 0.836927 | 7.02E-57 | -1.69E-46 |
| MS.gene054651 | MS.gene31079 | 0.811946 | 5.43E-51 | -1.69E-46 |
| MS.gene05468 | MS.gene31079 | 0.802495 | 5.46E-49 | -1.69E-46 |
| MS.gene055465 | MS.gene31079 | 0.807747 | 4.35E-50 | -1.69E-46 |
| MS.gene055466 | MS.gene31079 | 0.841329 | 5.08E-58 | -1.69E-46 |
| MS.gene055468 | MS.gene31079 | 0.8019 | 7.24E-49 | -1.69E-46 |
| MS.gene055818 | MS.gene31079 | 0.843329 | 1.50E-58 | -1.69E-46 |
| MS.gene055864 | MS.gene31079 | 0.800415 | 1.46E-48 | -1.69E-46 |
| MS.gene055926 | MS.gene31079 | 0.810893 | 9.19E-51 | -1.69E-46 |
| MS.gene056173 | MS.gene31079 | 0.817089 | 3.95E-52 | -1.69E-46 |
| MS.gene056174 | MS.gene31079 | 0.800705 | 1.27E-48 | -1.69E-46 |
| MS.gene057915 | MS.gene31079 | 0.815129 | 1.08E-51 | -1.69E-46 |
| MS.gene058625 | MS.gene31079 | 0.833297 | 5.78E-56 | -1.69E-46 |
| MS.gene059283 | MS.gene31079 | 0.815915 | 7.24E-52 | -1.69E-46 |
| MS.gene059570 | MS.gene31079 | 0.822085 | 2.86E-53 | -1.69E-46 |
| MS.gene05973 | MS.gene31079 | 0.801029 | 1.09E-48 | -1.69E-46 |
| MS.gene060322 | MS.gene31079 | 0.823997 | 1.02E-53 | -1.69E-46 |
| MS.gene06052 | MS.gene31079 | 0.838437 | 2.88E-57 | -1.69E-46 |
| MS.gene060683 | MS.gene31079 | 0.811136 | 8.14E-51 | -1.69E-46 |
| MS.gene060685 | MS.gene31079 | 0.822953 | 1.80E-53 | -1.69E-46 |
| MS.gene060803 | MS.gene31079 | 0.815547 | 8.74E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene31079 | MS.gene95775 | PPI |
| MS.gene31079 | MS.gene041017 | PPI |
| MS.gene31079 | MS.gene84970 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31079.t1 | MTR_2g098310 | 92.701 | 411 | 18 | 3 | 1 | 411 | 1 | 399 | 0.0 | 748 |
| MS.gene31079.t1 | MTR_2g098310 | 93.827 | 405 | 13 | 3 | 1 | 405 | 1 | 393 | 0.0 | 748 |
| MS.gene31079.t1 | MTR_2g098310 | 86.364 | 440 | 13 | 4 | 1 | 405 | 1 | 428 | 0.0 | 729 |
| MS.gene31079.t1 | MTR_2g098310 | 93.455 | 382 | 13 | 3 | 1 | 382 | 1 | 370 | 0.0 | 700 |
| MS.gene31079.t1 | MTR_2g098310 | 93.075 | 361 | 13 | 3 | 1 | 361 | 1 | 349 | 0.0 | 653 |
| MS.gene31079.t1 | MTR_4g065870 | 50.780 | 449 | 144 | 16 | 1 | 405 | 1 | 416 | 2.71e-134 | 392 |
| MS.gene31079.t1 | MTR_4g065870 | 50.780 | 449 | 144 | 16 | 1 | 405 | 1 | 416 | 4.60e-134 | 392 |
| MS.gene31079.t1 | MTR_4g065870 | 49.296 | 426 | 139 | 16 | 1 | 382 | 1 | 393 | 2.17e-119 | 353 |
| MS.gene31079.t1 | MTR_1g052470 | 47.436 | 312 | 129 | 9 | 113 | 403 | 60 | 357 | 1.54e-72 | 232 |
| MS.gene31079.t1 | MTR_3g028520 | 35.971 | 417 | 202 | 14 | 3 | 405 | 18 | 383 | 1.28e-50 | 176 |
| MS.gene31079.t1 | MTR_3g027650 | 35.971 | 417 | 202 | 14 | 3 | 405 | 18 | 383 | 1.28e-50 | 176 |
| MS.gene31079.t1 | MTR_3g027650 | 35.971 | 417 | 202 | 14 | 3 | 405 | 18 | 383 | 2.08e-50 | 175 |
| MS.gene31079.t1 | MTR_7g092540 | 44.167 | 240 | 109 | 5 | 169 | 405 | 87 | 304 | 6.51e-44 | 155 |
| MS.gene31079.t1 | MTR_7g092540 | 44.167 | 240 | 109 | 5 | 169 | 405 | 87 | 304 | 1.06e-43 | 155 |
| MS.gene31079.t1 | MTR_1g052470 | 40.511 | 274 | 120 | 9 | 113 | 361 | 60 | 315 | 3.71e-42 | 151 |
| MS.gene31079.t1 | MTR_8g036235 | 35.236 | 403 | 195 | 13 | 8 | 403 | 32 | 375 | 3.10e-41 | 150 |
| MS.gene31079.t1 | MTR_3g027650 | 33.249 | 394 | 198 | 14 | 3 | 382 | 18 | 360 | 3.87e-36 | 136 |
| MS.gene31079.t1 | MTR_1g116790 | 63.636 | 99 | 31 | 2 | 309 | 405 | 231 | 326 | 5.14e-32 | 124 |
| MS.gene31079.t1 | MTR_4g033295 | 75.000 | 76 | 17 | 1 | 330 | 405 | 106 | 179 | 9.12e-31 | 117 |
| MS.gene31079.t1 | MTR_4g033295 | 75.000 | 76 | 17 | 1 | 330 | 405 | 106 | 179 | 1.80e-30 | 116 |
| MS.gene31079.t1 | MTR_8g036235 | 32.152 | 395 | 198 | 14 | 8 | 395 | 32 | 363 | 1.39e-29 | 119 |
| MS.gene31079.t1 | MTR_6g052280 | 62.319 | 69 | 26 | 0 | 314 | 382 | 24 | 92 | 4.19e-21 | 89.0 |
| MS.gene31079.t1 | MTR_4g033295 | 79.245 | 53 | 9 | 1 | 330 | 382 | 106 | 156 | 2.70e-20 | 88.2 |
| MS.gene31079.t1 | MTR_1g017350 | 47.619 | 84 | 36 | 1 | 322 | 405 | 246 | 321 | 1.00e-15 | 79.0 |
| MS.gene31079.t1 | MTR_4g131160 | 58.730 | 63 | 25 | 1 | 343 | 405 | 195 | 256 | 1.10e-15 | 78.6 |
| MS.gene31079.t1 | MTR_1g017350 | 47.619 | 84 | 36 | 1 | 322 | 405 | 246 | 321 | 1.11e-15 | 79.0 |
| MS.gene31079.t1 | MTR_1g017350 | 47.619 | 84 | 36 | 1 | 322 | 405 | 246 | 321 | 1.17e-15 | 79.0 |
| MS.gene31079.t1 | MTR_4g131160 | 58.730 | 63 | 25 | 1 | 343 | 405 | 198 | 259 | 1.20e-15 | 78.6 |
| MS.gene31079.t1 | MTR_1g017350 | 47.619 | 84 | 36 | 1 | 322 | 405 | 246 | 321 | 1.30e-15 | 78.6 |
| MS.gene31079.t1 | MTR_8g012290 | 51.316 | 76 | 30 | 1 | 337 | 405 | 277 | 352 | 4.82e-15 | 77.4 |
| MS.gene31079.t1 | MTR_8g012290 | 51.316 | 76 | 30 | 1 | 337 | 405 | 277 | 352 | 5.05e-15 | 77.0 |
| MS.gene31079.t1 | MTR_3g116770 | 56.250 | 64 | 28 | 0 | 342 | 405 | 189 | 252 | 5.66e-15 | 76.6 |
| MS.gene31079.t1 | MTR_3g116770 | 56.250 | 64 | 28 | 0 | 342 | 405 | 189 | 252 | 5.68e-15 | 76.6 |
| MS.gene31079.t1 | MTR_7g053410 | 36.885 | 122 | 68 | 2 | 285 | 405 | 265 | 378 | 6.14e-15 | 77.0 |
| MS.gene31079.t1 | MTR_7g053410 | 36.885 | 122 | 68 | 2 | 285 | 405 | 265 | 378 | 6.97e-15 | 76.6 |
| MS.gene31079.t1 | MTR_3g498825 | 56.250 | 64 | 28 | 0 | 342 | 405 | 145 | 208 | 7.45e-15 | 75.5 |
| MS.gene31079.t1 | MTR_8g062240 | 33.523 | 176 | 98 | 5 | 234 | 405 | 52 | 212 | 2.63e-14 | 73.2 |
| MS.gene31079.t1 | MTR_8g065740 | 56.452 | 62 | 27 | 0 | 344 | 405 | 305 | 366 | 2.90e-14 | 74.7 |
| MS.gene31079.t1 | MTR_1g080890 | 55.556 | 63 | 27 | 1 | 343 | 405 | 192 | 253 | 3.42e-14 | 73.9 |
| MS.gene31079.t1 | MTR_4g070320 | 54.839 | 62 | 28 | 0 | 344 | 405 | 143 | 204 | 4.57e-14 | 73.2 |
| MS.gene31079.t1 | MTR_5g048860 | 48.000 | 75 | 31 | 1 | 331 | 405 | 360 | 426 | 5.28e-14 | 74.3 |
| MS.gene31079.t1 | MTR_8g099880 | 51.562 | 64 | 31 | 0 | 342 | 405 | 143 | 206 | 3.33e-13 | 70.5 |
| MS.gene31079.t1 | MTR_5g037250 | 43.373 | 83 | 39 | 1 | 323 | 405 | 99 | 173 | 1.94e-12 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31079.t1 | AT1G51140 | 36.893 | 412 | 193 | 12 | 5 | 406 | 12 | 366 | 1.59e-62 | 206 |
| MS.gene31079.t1 | AT2G42280 | 37.592 | 407 | 162 | 15 | 11 | 403 | 10 | 338 | 2.61e-61 | 202 |
| MS.gene31079.t1 | AT2G42280 | 37.592 | 407 | 162 | 15 | 11 | 403 | 10 | 338 | 3.61e-61 | 202 |
| MS.gene31079.t1 | AT1G35460 | 75.342 | 73 | 18 | 0 | 336 | 408 | 173 | 245 | 1.74e-32 | 124 |
| MS.gene31079.t1 | AT2G43140 | 64.516 | 93 | 32 | 1 | 314 | 405 | 103 | 195 | 1.77e-32 | 122 |
| MS.gene31079.t1 | AT4G09180 | 65.169 | 89 | 31 | 0 | 320 | 408 | 160 | 248 | 1.40e-31 | 121 |
| MS.gene31079.t1 | AT2G42280 | 31.335 | 367 | 156 | 14 | 11 | 361 | 10 | 296 | 4.05e-31 | 121 |
| MS.gene31079.t1 | AT2G43140 | 38.367 | 245 | 102 | 10 | 176 | 405 | 82 | 292 | 2.23e-30 | 119 |
| MS.gene31079.t1 | AT1G35460 | 80.851 | 47 | 9 | 0 | 336 | 382 | 173 | 219 | 6.13e-21 | 91.3 |
| MS.gene31079.t1 | AT2G24260 | 60.317 | 63 | 24 | 1 | 343 | 405 | 34 | 95 | 2.52e-16 | 78.6 |
| MS.gene31079.t1 | AT2G24260 | 60.317 | 63 | 24 | 1 | 343 | 405 | 137 | 198 | 6.77e-16 | 79.0 |
| MS.gene31079.t1 | AT4G34530 | 50.000 | 84 | 40 | 1 | 322 | 405 | 152 | 233 | 6.89e-16 | 79.0 |
| MS.gene31079.t1 | AT4G30980 | 58.730 | 63 | 25 | 1 | 343 | 405 | 129 | 190 | 1.39e-15 | 77.4 |
| MS.gene31079.t1 | AT4G30980 | 58.730 | 63 | 25 | 1 | 343 | 405 | 177 | 238 | 1.91e-15 | 77.8 |
| MS.gene31079.t1 | AT5G50915 | 56.250 | 64 | 28 | 0 | 342 | 405 | 134 | 197 | 1.98e-15 | 76.3 |
| MS.gene31079.t1 | AT5G50915 | 56.250 | 64 | 28 | 0 | 342 | 405 | 134 | 197 | 1.98e-15 | 76.3 |
| MS.gene31079.t1 | AT5G50915 | 56.250 | 64 | 28 | 0 | 342 | 405 | 134 | 197 | 2.15e-15 | 76.6 |
| MS.gene31079.t1 | AT5G50915 | 56.250 | 64 | 28 | 0 | 342 | 405 | 134 | 197 | 2.15e-15 | 76.6 |
| MS.gene31079.t1 | AT1G10120 | 47.619 | 84 | 36 | 1 | 322 | 405 | 192 | 267 | 4.15e-15 | 76.6 |
| MS.gene31079.t1 | AT1G10120 | 47.619 | 84 | 36 | 1 | 322 | 405 | 192 | 267 | 4.15e-15 | 76.6 |
| MS.gene31079.t1 | AT1G68920 | 54.688 | 64 | 29 | 0 | 342 | 405 | 300 | 363 | 6.96e-15 | 76.6 |
| MS.gene31079.t1 | AT1G68920 | 54.688 | 64 | 29 | 0 | 342 | 405 | 301 | 364 | 7.37e-15 | 76.6 |
| MS.gene31079.t1 | AT1G68920 | 54.688 | 64 | 29 | 0 | 342 | 405 | 301 | 364 | 7.37e-15 | 76.6 |
| MS.gene31079.t1 | AT1G68920 | 54.688 | 64 | 29 | 0 | 342 | 405 | 301 | 364 | 7.37e-15 | 76.6 |
| MS.gene31079.t1 | AT3G07340 | 54.688 | 64 | 29 | 0 | 342 | 405 | 256 | 319 | 9.85e-15 | 76.3 |
| MS.gene31079.t1 | AT3G07340 | 54.688 | 64 | 29 | 0 | 342 | 405 | 256 | 319 | 1.08e-14 | 75.9 |
| MS.gene31079.t1 | AT1G25330 | 54.839 | 62 | 28 | 0 | 344 | 405 | 104 | 165 | 1.17e-14 | 73.2 |
| MS.gene31079.t1 | AT5G58010 | 53.968 | 63 | 28 | 1 | 343 | 405 | 98 | 159 | 1.18e-14 | 74.7 |
| MS.gene31079.t1 | AT1G26260 | 56.250 | 64 | 28 | 0 | 342 | 405 | 199 | 262 | 2.10e-14 | 74.7 |
| MS.gene31079.t1 | AT1G26260 | 58.065 | 62 | 26 | 0 | 344 | 405 | 223 | 284 | 2.36e-14 | 74.7 |
| MS.gene31079.t1 | AT1G26260 | 58.065 | 62 | 26 | 0 | 344 | 405 | 223 | 284 | 2.36e-14 | 74.7 |
| MS.gene31079.t1 | AT1G26260 | 58.065 | 62 | 26 | 0 | 344 | 405 | 223 | 284 | 2.36e-14 | 74.7 |
| MS.gene31079.t1 | AT1G26260 | 58.065 | 62 | 26 | 0 | 344 | 405 | 223 | 284 | 2.36e-14 | 74.7 |
| MS.gene31079.t1 | AT1G26260 | 58.065 | 62 | 26 | 0 | 344 | 405 | 172 | 233 | 2.42e-14 | 74.3 |
| MS.gene31079.t1 | AT5G48560 | 54.839 | 62 | 28 | 0 | 344 | 405 | 301 | 362 | 3.55e-14 | 74.7 |
| MS.gene31079.t1 | AT5G48560 | 54.839 | 62 | 28 | 0 | 344 | 405 | 301 | 362 | 3.66e-14 | 74.3 |
| MS.gene31079.t1 | AT3G23690 | 51.562 | 64 | 31 | 0 | 342 | 405 | 189 | 252 | 2.37e-13 | 71.6 |
| MS.gene31079.t1 | AT1G59640 | 53.226 | 62 | 29 | 0 | 344 | 405 | 136 | 197 | 2.81e-13 | 70.1 |
| MS.gene31079.t1 | AT1G18400 | 51.613 | 62 | 30 | 0 | 344 | 405 | 145 | 206 | 2.90e-13 | 69.7 |
| MS.gene31079.t1 | AT1G73830 | 51.613 | 62 | 30 | 0 | 344 | 405 | 147 | 208 | 3.35e-13 | 69.7 |
| MS.gene31079.t1 | AT1G73830 | 51.613 | 62 | 30 | 0 | 344 | 405 | 147 | 208 | 3.63e-13 | 69.7 |
| MS.gene31079.t1 | AT1G18400 | 51.613 | 62 | 30 | 0 | 344 | 405 | 145 | 206 | 5.07e-13 | 69.3 |
| MS.gene31079.t1 | AT2G18300 | 50.000 | 62 | 31 | 0 | 344 | 405 | 185 | 246 | 6.57e-13 | 69.7 |
| MS.gene31079.t1 | AT2G18300 | 50.000 | 62 | 31 | 0 | 344 | 405 | 185 | 246 | 6.72e-13 | 69.7 |
| MS.gene31079.t1 | AT1G59640 | 53.226 | 62 | 29 | 0 | 344 | 405 | 136 | 197 | 1.01e-12 | 69.3 |
| MS.gene31079.t1 | AT2G18300 | 50.000 | 62 | 31 | 0 | 344 | 405 | 185 | 246 | 1.02e-12 | 69.3 |
| MS.gene31079.t1 | AT4G36540 | 48.438 | 64 | 33 | 0 | 342 | 405 | 139 | 202 | 1.57e-12 | 68.2 |
| MS.gene31079.t1 | AT4G36540 | 48.438 | 64 | 33 | 0 | 342 | 405 | 139 | 202 | 1.64e-12 | 68.2 |
| MS.gene31079.t1 | AT2G42300 | 47.143 | 70 | 36 | 1 | 337 | 405 | 177 | 246 | 4.00e-12 | 67.4 |
| MS.gene31079.t1 | AT2G42300 | 47.143 | 70 | 36 | 1 | 337 | 405 | 177 | 246 | 5.40e-12 | 66.2 |
| MS.gene31079.t1 | AT5G62610 | 46.875 | 64 | 34 | 0 | 342 | 405 | 151 | 214 | 1.22e-11 | 65.5 |
| MS.gene31079.t1 | AT5G62610 | 46.875 | 64 | 34 | 0 | 342 | 405 | 151 | 214 | 1.22e-11 | 65.5 |
| MS.gene31079.t1 | AT3G57800 | 46.875 | 64 | 34 | 0 | 342 | 405 | 202 | 265 | 2.06e-11 | 65.5 |
Find 69 sgRNAs with CRISPR-Local
Find 207 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTTCTTTCTTCAACAATTA+TGG | 0.131409 | 2.4:-5718300 | MS.gene31079:CDS |
| GCCATTTCAGATGAAGTATT+TGG | 0.195078 | 2.4:+5719854 | None:intergenic |
| TTCCTTGAAGTAGAAAATTT+TGG | 0.197445 | 2.4:+5720262 | None:intergenic |
| CGCTCTGTTTCTGGACTTGA+TGG | 0.209227 | 2.4:+5721454 | None:intergenic |
| TCTCAAATTAACATTGAAAA+TGG | 0.226358 | 2.4:-5721025 | MS.gene31079:intron |
| ACCCTTTCGGCAATGCTTCT+TGG | 0.230259 | 2.4:+5719755 | None:intergenic |
| CCAAATCAGAATGTTTCTTC+TGG | 0.278715 | 2.4:-5721157 | MS.gene31079:CDS |
| AAGTCATGGTAACGAATATT+TGG | 0.278825 | 2.4:-5720134 | MS.gene31079:CDS |
| TCAAGGTTTATTAACAGTTT+TGG | 0.288729 | 2.4:-5721424 | MS.gene31079:CDS |
| CCCTTTCGGCAATGCTTCTT+GGG | 0.290663 | 2.4:+5719756 | None:intergenic |
| CTTCTTTCTTCAACAATTAT+GGG | 0.299148 | 2.4:-5718299 | MS.gene31079:CDS |
| TAACGAATATTTGGATTATC+AGG | 0.309141 | 2.4:-5720125 | MS.gene31079:CDS |
| CATGGTACCTTATCCATGTT+TGG | 0.320678 | 2.4:+5719075 | None:intergenic |
| TAAATTGGCTTCAGGTTAGA+AGG | 0.325551 | 2.4:-5719140 | MS.gene31079:intron |
| CACCCACAAGTAAATTCTTC+AGG | 0.335781 | 2.4:-5721559 | MS.gene31079:CDS |
| CCAGAAGAAACATTCTGATT+TGG | 0.339425 | 2.4:+5721157 | None:intergenic |
| ATGGTTGATTAGAATGAAAC+AGG | 0.344190 | 2.4:-5719920 | MS.gene31079:intron |
| ATCAATAATCCATACCCTTT+CGG | 0.345815 | 2.4:+5719742 | None:intergenic |
| AATGAAGAAAATGAAGCTTT+TGG | 0.348594 | 2.4:-5720160 | MS.gene31079:CDS |
| ATGAGAGGAATGGGAACTTT+AGG | 0.362085 | 2.4:-5720310 | MS.gene31079:CDS |
| GCCAAATACTTCATCTGAAA+TGG | 0.370699 | 2.4:-5719855 | MS.gene31079:CDS |
| AATGTTTCTTCTGGTTTAGA+TGG | 0.373647 | 2.4:-5721148 | MS.gene31079:CDS |
| AGGACATTCTAATTCTCCTT+TGG | 0.389735 | 2.4:-5719894 | MS.gene31079:CDS |
| CCCAAGAAGCATTGCCGAAA+GGG | 0.390620 | 2.4:-5719756 | MS.gene31079:intron |
| AATCAATCAAACTATTCATC+AGG | 0.391137 | 2.4:-5720232 | MS.gene31079:CDS |
| AACTCTGTTCCTTCTTCTCA+TGG | 0.404649 | 2.4:-5721211 | MS.gene31079:CDS |
| TTCGGCAATGCTTCTTGGGT+GGG | 0.408101 | 2.4:+5719760 | None:intergenic |
| TGGATTATCAGGTTGATACT+TGG | 0.436048 | 2.4:-5720114 | MS.gene31079:CDS |
| TTCATCTGAAATGGCAGCTA+TGG | 0.443352 | 2.4:-5719846 | MS.gene31079:CDS |
| CTAAAATTAGTGAGCGTATG+AGG | 0.443405 | 2.4:-5719116 | MS.gene31079:CDS |
| ATGGTACCTTATCCATGTTT+GGG | 0.462347 | 2.4:+5719076 | None:intergenic |
| TATGTTAGTATGAGAGGAAT+GGG | 0.466243 | 2.4:-5720319 | MS.gene31079:CDS |
| TATGAGGAAGCTACAAGATC+TGG | 0.475457 | 2.4:-5719100 | MS.gene31079:CDS |
| TTTCGGCAATGCTTCTTGGG+TGG | 0.478638 | 2.4:+5719759 | None:intergenic |
| AACCTGAAGAATTTACTTGT+GGG | 0.489854 | 2.4:+5721557 | None:intergenic |
| TCTGGTCCCAAACATGGATA+AGG | 0.497918 | 2.4:-5719082 | MS.gene31079:intron |
| GTTCCACCATGATTCTTCAC+TGG | 0.498567 | 2.4:+5721094 | None:intergenic |
| GGATTATCAGGTTGATACTT+GGG | 0.502341 | 2.4:-5720113 | MS.gene31079:CDS |
| ACAACAACAAGATCAGGGTT+TGG | 0.506743 | 2.4:-5721308 | MS.gene31079:CDS |
| GTGGGTGGCACAACCTCGCT+TGG | 0.508441 | 2.4:+5719778 | None:intergenic |
| GGCAATGCTTCTTGGGTGGG+TGG | 0.511007 | 2.4:+5719763 | None:intergenic |
| CACAGCAGATATGTTGGACT+TGG | 0.518004 | 2.4:-5718947 | MS.gene31079:CDS |
| AACAGTGAAAGAAGAAGAAG+AGG | 0.518044 | 2.4:-5721356 | MS.gene31079:CDS |
| GCAGGTTATGTTAGTATGAG+AGG | 0.524043 | 2.4:-5720325 | MS.gene31079:intron |
| ATTTGAGAAAATAATCCAGC+TGG | 0.524222 | 2.4:+5721040 | None:intergenic |
| AACAAACACAGCAGATATGT+TGG | 0.533839 | 2.4:-5718953 | MS.gene31079:CDS |
| ATGAAAATTCGTGCCAAGCG+AGG | 0.540193 | 2.4:-5719791 | MS.gene31079:CDS |
| ACATTCTGATTTGGCAAAGG+TGG | 0.545087 | 2.4:+5721166 | None:intergenic |
| AGATATGTTGGACTTGGCTG+TGG | 0.548724 | 2.4:-5718941 | MS.gene31079:CDS |
| AGACCTTCAAAAGCAAGCTC+AGG | 0.554514 | 2.4:-5718908 | MS.gene31079:intron |
| GAAACATTCTGATTTGGCAA+AGG | 0.556566 | 2.4:+5721163 | None:intergenic |
| TTATGTTAGTATGAGAGGAA+TGG | 0.558938 | 2.4:-5720320 | MS.gene31079:CDS |
| AGACATAGTAGTTCACCAGC+TGG | 0.569208 | 2.4:-5721055 | MS.gene31079:CDS |
| TTGCAGCCAGTGAAGAATCA+TGG | 0.569699 | 2.4:-5721100 | MS.gene31079:CDS |
| ATGTCAACAATAGCTGAAGT+TGG | 0.572331 | 2.4:-5720205 | MS.gene31079:CDS |
| ACAAGATCTGGTCCCAAACA+TGG | 0.576424 | 2.4:-5719088 | MS.gene31079:CDS |
| ATCAATCAAACTATTCATCA+GGG | 0.580340 | 2.4:-5720231 | MS.gene31079:CDS |
| ACCCAAGAAGCATTGCCGAA+AGG | 0.582792 | 2.4:-5719757 | MS.gene31079:CDS |
| AAACCTGAAGAATTTACTTG+TGG | 0.586193 | 2.4:+5721556 | None:intergenic |
| ATAGCTGAAGTTGGTGACAA+AGG | 0.592602 | 2.4:-5720196 | MS.gene31079:CDS |
| TAAATTCTTCAGGTTTAACA+AGG | 0.602353 | 2.4:-5721549 | MS.gene31079:CDS |
| TTCAATCAACAATGAACATG+TGG | 0.608573 | 2.4:-5721284 | MS.gene31079:CDS |
| GATTAGAATGAAACAGGAGG+AGG | 0.610884 | 2.4:-5719914 | MS.gene31079:intron |
| ATGATGTCTGAAAATGTTGG+TGG | 0.620048 | 2.4:-5720079 | MS.gene31079:CDS |
| ATACTCAATTGATGAGCCAA+AGG | 0.626112 | 2.4:+5719878 | None:intergenic |
| ATGTTGTTGAAATATGAACT+TGG | 0.650570 | 2.4:+5721514 | None:intergenic |
| GAAATGATGTCTGAAAATGT+TGG | 0.668717 | 2.4:-5720082 | MS.gene31079:CDS |
| GTTGATTAGAATGAAACAGG+AGG | 0.674543 | 2.4:-5719917 | MS.gene31079:intron |
| CAGCCAGTGAAGAATCATGG+TGG | 0.713307 | 2.4:-5721097 | MS.gene31079:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATATTAGTTATTACTTATT+AGG | - | chr2.4:5719456-5719475 | MS.gene31079:intron | 10.0% |
| !! | TACTAACTATATAAATTAAT+GGG | - | chr2.4:5720415-5720434 | MS.gene31079:intron | 10.0% |
| !! | TTAAAGAAATAAAATAGTTT+GGG | + | chr2.4:5719495-5719514 | None:intergenic | 10.0% |
| !! | TTACTAACTATATAAATTAA+TGG | - | chr2.4:5720414-5720433 | MS.gene31079:intron | 10.0% |
| !! | AAACAAAAGAAAAGTAATAT+AGG | + | chr2.4:5720292-5720311 | None:intergenic | 15.0% |
| !! | AACAAAAGAAAAGTAATATA+GGG | + | chr2.4:5720291-5720310 | None:intergenic | 15.0% |
| !! | ACTAACTATATAAATTAATG+GGG | - | chr2.4:5720416-5720435 | MS.gene31079:intron | 15.0% |
| !! | ATATATTAAAGATCTCTTTA+GGG | - | chr2.4:5719337-5719356 | MS.gene31079:intron | 15.0% |
| !! | CAAATATAGAAATAATGTAT+TGG | - | chr2.4:5721277-5721296 | MS.gene31079:CDS | 15.0% |
| !! | CTAAAACTAAATATGTAAAT+TGG | + | chr2.4:5720328-5720347 | None:intergenic | 15.0% |
| !! | GTTAAAGAAATAAAATAGTT+TGG | + | chr2.4:5719496-5719515 | None:intergenic | 15.0% |
| !! | TAAAGAAATAAAATAGTTTG+GGG | + | chr2.4:5719494-5719513 | None:intergenic | 15.0% |
| !! | TATATATTAAAGATCTCTTT+AGG | - | chr2.4:5719336-5719355 | MS.gene31079:intron | 15.0% |
| !!! | ATATTACTTTTCTTTTGTTT+AGG | - | chr2.4:5720292-5720311 | MS.gene31079:CDS | 15.0% |
| !!! | TATTTTTTTCTCTTTAAAGT+AGG | + | chr2.4:5719253-5719272 | None:intergenic | 15.0% |
| !!! | TGTTAAGAGTATTAATTTAT+GGG | + | chr2.4:5720713-5720732 | None:intergenic | 15.0% |
| !!! | TTATAGAATATTTCTTCTTT+TGG | - | chr2.4:5721355-5721374 | MS.gene31079:CDS | 15.0% |
| !!! | TTCAAATTTAACATTTTTCT+AGG | + | chr2.4:5719283-5719302 | None:intergenic | 15.0% |
| !!! | TTTTAATATTTGCTATTATG+TGG | - | chr2.4:5719371-5719390 | MS.gene31079:intron | 15.0% |
| !! | AATTATTACAAATCTGTACA+TGG | + | chr2.4:5721436-5721455 | None:intergenic | 20.0% |
| !! | CAAAGAGTGAATTAATTAAT+GGG | - | chr2.4:5721215-5721234 | MS.gene31079:CDS | 20.0% |
| !! | CATTCACATAAATTAATGTA+TGG | + | chr2.4:5720866-5720885 | None:intergenic | 20.0% |
| !! | TAACAAATAAAAGCTAATCT+AGG | + | chr2.4:5721482-5721501 | None:intergenic | 20.0% |
| !! | TCTCAAATTAACATTGAAAA+TGG | - | chr2.4:5718854-5718873 | MS.gene31079:intron | 20.0% |
| !! | TGAAGAAAATGAATTGTAAA+AGG | - | chr2.4:5719123-5719142 | MS.gene31079:CDS | 20.0% |
| !! | TGTACAGATTTGTAATAATT+TGG | - | chr2.4:5721436-5721455 | MS.gene31079:CDS | 20.0% |
| !!! | AATTTGAAAATTTTCTTGTC+AGG | - | chr2.4:5719295-5719314 | MS.gene31079:intron | 20.0% |
| !!! | ACTATTAAGACATGATTTTT+GGG | - | chr2.4:5720354-5720373 | MS.gene31079:intron | 20.0% |
| !!! | ATTTGAAAATTTTCTTGTCA+GGG | - | chr2.4:5719296-5719315 | MS.gene31079:intron | 20.0% |
| !!! | GTGTTAAGAGTATTAATTTA+TGG | + | chr2.4:5720714-5720733 | None:intergenic | 20.0% |
| !!! | GTTAAGAGTATTAATTTATG+GGG | + | chr2.4:5720712-5720731 | None:intergenic | 20.0% |
| !!! | TACATGGACTAATTAATTAA+GGG | + | chr2.4:5721420-5721439 | None:intergenic | 20.0% |
| !!! | TACTATTAAGACATGATTTT+TGG | - | chr2.4:5720353-5720372 | MS.gene31079:intron | 20.0% |
| ! | AAGATGGAGATAAATTAGTA+GGG | - | chr2.4:5721552-5721571 | MS.gene31079:CDS | 25.0% |
| ! | AATAACTAATATTCCCACTA+GGG | + | chr2.4:5719449-5719468 | None:intergenic | 25.0% |
| ! | AATCAATCAAACTATTCATC+AGG | - | chr2.4:5719647-5719666 | MS.gene31079:intron | 25.0% |
| ! | ACTTCTTTCTTCAACAATTA+TGG | - | chr2.4:5721579-5721598 | MS.gene31079:CDS | 25.0% |
| ! | ATCAATCAAACTATTCATCA+GGG | - | chr2.4:5719648-5719667 | MS.gene31079:intron | 25.0% |
| ! | ATCTTCATTATGTACATCAA+GGG | + | chr2.4:5721537-5721556 | None:intergenic | 25.0% |
| ! | ATGTTGTTGAAATATGAACT+TGG | + | chr2.4:5718368-5718387 | None:intergenic | 25.0% |
| ! | CTCTTAACACATCATTAAAT+TGG | - | chr2.4:5720724-5720743 | MS.gene31079:intron | 25.0% |
| ! | CTTCTTTCTTCAACAATTAT+GGG | - | chr2.4:5721580-5721599 | MS.gene31079:CDS | 25.0% |
| ! | GCAAAGAGTGAATTAATTAA+TGG | - | chr2.4:5721214-5721233 | MS.gene31079:CDS | 25.0% |
| ! | GTGTTGGAAGAAAATTAATT+AGG | + | chr2.4:5721124-5721143 | None:intergenic | 25.0% |
| ! | TAACGAATATTTGGATTATC+AGG | - | chr2.4:5719754-5719773 | MS.gene31079:intron | 25.0% |
| ! | TAATAACTAATATTCCCACT+AGG | + | chr2.4:5719450-5719469 | None:intergenic | 25.0% |
| ! | TAATCAAGTGTAATTACACT+TGG | + | chr2.4:5719030-5719049 | None:intergenic | 25.0% |
| ! | TAGAATTATCTATAACCAAG+TGG | + | chr2.4:5720254-5720273 | None:intergenic | 25.0% |
| ! | TCTAATAAAATCCACCATTT+CGG | + | chr2.4:5719075-5719094 | None:intergenic | 25.0% |
| ! | TCTTAAGTGTAGTTTCTTAA+TGG | - | chr2.4:5719912-5719931 | MS.gene31079:intron | 25.0% |
| ! | TGAAAAAAAAAAACCCTAGT+GGG | - | chr2.4:5719433-5719452 | MS.gene31079:intron | 25.0% |
| ! | TGATGTTATGCAAGTTTAAT+TGG | - | chr2.4:5719532-5719551 | MS.gene31079:intron | 25.0% |
| ! | TGTGAGTAAAATTTCAGATT+TGG | + | chr2.4:5718967-5718986 | None:intergenic | 25.0% |
| ! | TTGCAATTTATCTTCATTCA+GGG | - | chr2.4:5720639-5720658 | MS.gene31079:intron | 25.0% |
| ! | TTTGCAATTTATCTTCATTC+AGG | - | chr2.4:5720638-5720657 | MS.gene31079:intron | 25.0% |
| !! | AACCAAAATTTTCTACTTCA+AGG | - | chr2.4:5719615-5719634 | MS.gene31079:intron | 25.0% |
| !! | AATGAAGAAAATGAAGCTTT+TGG | - | chr2.4:5719719-5719738 | MS.gene31079:intron | 25.0% |
| !! | ATGAATTGTAAAAGGTTTTC+TGG | - | chr2.4:5719131-5719150 | MS.gene31079:intron | 25.0% |
| !! | CATTTGACATGATTTTGTTA+TGG | - | chr2.4:5719940-5719959 | MS.gene31079:intron | 25.0% |
| !! | CTATTAAGACATGATTTTTG+GGG | - | chr2.4:5720355-5720374 | MS.gene31079:intron | 25.0% |
| !! | GATTCAAAACAACAATTTTC+TGG | - | chr2.4:5719845-5719864 | MS.gene31079:CDS | 25.0% |
| !! | GTACATGGACTAATTAATTA+AGG | + | chr2.4:5721421-5721440 | None:intergenic | 25.0% |
| !! | TAAATTCTTCAGGTTTAACA+AGG | - | chr2.4:5718330-5718349 | MS.gene31079:intron | 25.0% |
| !! | TCAAGGTTTATTAACAGTTT+TGG | - | chr2.4:5718455-5718474 | MS.gene31079:intron | 25.0% |
| !! | TTCCTTGAAGTAGAAAATTT+TGG | + | chr2.4:5719620-5719639 | None:intergenic | 25.0% |
| !! | TTTGAAAATTTTCTTGTCAG+GGG | - | chr2.4:5719297-5719316 | MS.gene31079:intron | 25.0% |
| !!! | ATTTTCTGGTTTAAATGTTC+AGG | - | chr2.4:5719859-5719878 | MS.gene31079:CDS | 25.0% |
| !!! | TTAGATGGAAGTTTTTCAAT+GGG | - | chr2.4:5718746-5718765 | MS.gene31079:intron | 25.0% |
| !!! | TTTAGATGGAAGTTTTTCAA+TGG | - | chr2.4:5718745-5718764 | MS.gene31079:intron | 25.0% |
| !!! | TTTTTACCTTAGTTCTTATG+AGG | - | chr2.4:5720170-5720189 | MS.gene31079:CDS | 25.0% |
| AAACCTGAAGAATTTACTTG+TGG | + | chr2.4:5718326-5718345 | None:intergenic | 30.0% | |
| AACCTGAAGAATTTACTTGT+GGG | + | chr2.4:5718325-5718344 | None:intergenic | 30.0% | |
| AATCTAGGTAGATTCTAACT+TGG | + | chr2.4:5721467-5721486 | None:intergenic | 30.0% | |
| ACTAACAAAGTCTACATTCA+GGG | - | chr2.4:5720610-5720629 | MS.gene31079:intron | 30.0% | |
| ACTAACGAAATCTACATTCA+GGG | - | chr2.4:5720546-5720565 | MS.gene31079:intron | 30.0% | |
| ATCAATAATCCATACCCTTT+CGG | + | chr2.4:5720140-5720159 | None:intergenic | 30.0% | |
| ATGGTTGATTAGAATGAAAC+AGG | - | chr2.4:5719959-5719978 | MS.gene31079:intron | 30.0% | |
| ATTTGAGAAAATAATCCAGC+TGG | + | chr2.4:5718842-5718861 | None:intergenic | 30.0% | |
| CATCTTCATTATGTACATCA+AGG | + | chr2.4:5721538-5721557 | None:intergenic | 30.0% | |
| CTCAAATGGTTAATAAGCTT+CGG | + | chr2.4:5720227-5720246 | None:intergenic | 30.0% | |
| CTCGTTTCTGTTAAAATAGA+GGG | + | chr2.4:5718929-5718948 | None:intergenic | 30.0% | |
| CTTGATGTACATAATGAAGA+TGG | - | chr2.4:5721536-5721555 | MS.gene31079:CDS | 30.0% | |
| GAAATGATGTCTGAAAATGT+TGG | - | chr2.4:5719797-5719816 | MS.gene31079:CDS | 30.0% | |
| GAACCTCAATGTACATATAA+TGG | + | chr2.4:5720381-5720400 | None:intergenic | 30.0% | |
| GAAGATGGAGATAAATTAGT+AGG | - | chr2.4:5721551-5721570 | MS.gene31079:CDS | 30.0% | |
| GTGAAAAAAAAAAACCCTAG+TGG | - | chr2.4:5719432-5719451 | MS.gene31079:intron | 30.0% | |
| GTGTTTGTTTGCTTCAAAAA+AGG | + | chr2.4:5720915-5720934 | None:intergenic | 30.0% | |
| TATGTTAGTATGAGAGGAAT+GGG | - | chr2.4:5719560-5719579 | MS.gene31079:intron | 30.0% | |
| TCTCGTTTCTGTTAAAATAG+AGG | + | chr2.4:5718930-5718949 | None:intergenic | 30.0% | |
| TCTTCATTATGTACATCAAG+GGG | + | chr2.4:5721536-5721555 | None:intergenic | 30.0% | |
| TGATAAAAACCATGAGAAGA+AGG | + | chr2.4:5718680-5718699 | None:intergenic | 30.0% | |
| TTAAAACCAATCATGAAGCA+TGG | + | chr2.4:5720825-5720844 | None:intergenic | 30.0% | |
| TTATGTTAGTATGAGAGGAA+TGG | - | chr2.4:5719559-5719578 | MS.gene31079:intron | 30.0% | |
| TTCAATCAACAATGAACATG+TGG | - | chr2.4:5718595-5718614 | MS.gene31079:intron | 30.0% | |
| TTGCATATTATCTGCATTCA+GGG | + | chr2.4:5720489-5720508 | None:intergenic | 30.0% | |
| TTTGCATATTATCTGCATTC+AGG | + | chr2.4:5720490-5720509 | None:intergenic | 30.0% | |
| ! | AAGTCATGGTAACGAATATT+TGG | - | chr2.4:5719745-5719764 | MS.gene31079:intron | 30.0% |
| ! | TTTTCTTTGTTACGCACTTT+TGG | - | chr2.4:5718902-5718921 | MS.gene31079:intron | 30.0% |
| !! | AATGTTTCTTCTGGTTTAGA+TGG | - | chr2.4:5718731-5718750 | MS.gene31079:intron | 30.0% |
| !! | GTTTTTCAATGGGAGTTAAT+AGG | - | chr2.4:5718756-5718775 | MS.gene31079:intron | 30.0% |
| !! | TTTCTCTTTAAAGTAGGACA+AGG | + | chr2.4:5719247-5719266 | None:intergenic | 30.0% |
| !!! | TACTGATTTTTGATCCGAAA+TGG | - | chr2.4:5719058-5719077 | MS.gene31079:intron | 30.0% |
| AAAGTAGGACAAGGAAAACT+GGG | + | chr2.4:5719238-5719257 | None:intergenic | 35.0% | |
| AACAAACACAGCAGATATGT+TGG | - | chr2.4:5720926-5720945 | MS.gene31079:intron | 35.0% | |
| AACAGTGAAAGAAGAAGAAG+AGG | - | chr2.4:5718523-5718542 | MS.gene31079:intron | 35.0% | |
| ACAACAACAACAACAAGATC+AGG | - | chr2.4:5718565-5718584 | MS.gene31079:intron | 35.0% | |
| AGCAGCAACAACAACAATAA+CGG | - | chr2.4:5721192-5721211 | MS.gene31079:CDS | 35.0% | |
| AGGACATTCTAATTCTCCTT+TGG | - | chr2.4:5719985-5720004 | MS.gene31079:intron | 35.0% | |
| ATACTCAATTGATGAGCCAA+AGG | + | chr2.4:5720004-5720023 | None:intergenic | 35.0% | |
| ATGATGTCTGAAAATGTTGG+TGG | - | chr2.4:5719800-5719819 | MS.gene31079:CDS | 35.0% | |
| ATGGTACCTTATCCATGTTT+GGG | + | chr2.4:5720806-5720825 | None:intergenic | 35.0% | |
| ATGTCAACAATAGCTGAAGT+TGG | - | chr2.4:5719674-5719693 | MS.gene31079:intron | 35.0% | |
| CAACAACAACAACAAGATCA+GGG | - | chr2.4:5718566-5718585 | MS.gene31079:intron | 35.0% | |
| CCAAATCAGAATGTTTCTTC+TGG | - | chr2.4:5718722-5718741 | MS.gene31079:intron | 35.0% | |
| CCAGAAGAAACATTCTGATT+TGG | + | chr2.4:5718725-5718744 | None:intergenic | 35.0% | |
| CTAAAATTAGTGAGCGTATG+AGG | - | chr2.4:5720763-5720782 | MS.gene31079:intron | 35.0% | |
| GACTAACAAAGTCTACATTC+AGG | - | chr2.4:5720609-5720628 | MS.gene31079:intron | 35.0% | |
| GACTAACGAAATCTACATTC+AGG | - | chr2.4:5720545-5720564 | MS.gene31079:intron | 35.0% | |
| GCCAAATACTTCATCTGAAA+TGG | - | chr2.4:5720024-5720043 | MS.gene31079:CDS | 35.0% | |
| GGGGTGAATGAATTTATCTT+TGG | + | chr2.4:5721517-5721536 | None:intergenic | 35.0% | |
| GGTAGAATACTATCTAGCAT+TGG | - | chr2.4:5719880-5719899 | MS.gene31079:CDS | 35.0% | |
| GTTATGCAAGTTTAATTGGC+AGG | - | chr2.4:5719536-5719555 | MS.gene31079:intron | 35.0% | |
| GTTGATTAGAATGAAACAGG+AGG | - | chr2.4:5719962-5719981 | MS.gene31079:intron | 35.0% | |
| TAAAGTAGGACAAGGAAAAC+TGG | + | chr2.4:5719239-5719258 | None:intergenic | 35.0% | |
| TACTAGTATGTGGACTTGTA+AGG | - | chr2.4:5719171-5719190 | MS.gene31079:intron | 35.0% | |
| TACTTGCCTCATAAGAACTA+AGG | + | chr2.4:5720179-5720198 | None:intergenic | 35.0% | |
| TAGTACACGTTACTAGTATG+TGG | - | chr2.4:5719161-5719180 | MS.gene31079:intron | 35.0% | |
| TATTGAAGTTGTACATGCCA+CGG | + | chr2.4:5719203-5719222 | None:intergenic | 35.0% | |
| TCAGGGACTAAATTGACTAA+CGG | - | chr2.4:5720563-5720582 | MS.gene31079:intron | 35.0% | |
| TGAAGCTTCTATACAAGTGT+TGG | + | chr2.4:5721140-5721159 | None:intergenic | 35.0% | |
| ! | CACATCATTAAATTGGCTTC+AGG | - | chr2.4:5720731-5720750 | MS.gene31079:intron | 35.0% |
| ! | GCCATTTCAGATGAAGTATT+TGG | + | chr2.4:5720028-5720047 | None:intergenic | 35.0% |
| ! | TAAATTGGCTTCAGGTTAGA+AGG | - | chr2.4:5720739-5720758 | MS.gene31079:intron | 35.0% |
| ! | TGATTTTTGATCCGAAATGG+TGG | - | chr2.4:5719061-5719080 | MS.gene31079:intron | 35.0% |
| ! | TTTGTACTTGTTGCAACAAG+TGG | - | chr2.4:5719410-5719429 | MS.gene31079:intron | 35.0% |
| !! | AATGTTAACTTGTGCCCTTA+AGG | - | chr2.4:5721239-5721258 | MS.gene31079:CDS | 35.0% |
| !! | ATTCCTTAACTTGTGCCTTA+AGG | + | chr2.4:5721257-5721276 | None:intergenic | 35.0% |
| !! | GAAACATTCTGATTTGGCAA+AGG | + | chr2.4:5718719-5718738 | None:intergenic | 35.0% |
| !! | GGATTATCAGGTTGATACTT+GGG | - | chr2.4:5719766-5719785 | MS.gene31079:CDS | 35.0% |
| !! | TGGATTATCAGGTTGATACT+TGG | - | chr2.4:5719765-5719784 | MS.gene31079:CDS | 35.0% |
| !! | TTCCTTAACTTGTGCCTTAA+GGG | + | chr2.4:5721256-5721275 | None:intergenic | 35.0% |
| !!! | AAACAGAGCGAGTTTTTTCA+AGG | - | chr2.4:5718438-5718457 | MS.gene31079:intron | 35.0% |
| AACCATTTGAGCAAACCACT+TGG | - | chr2.4:5720236-5720255 | MS.gene31079:CDS | 40.0% | |
| AACTCTGTTCCTTCTTCTCA+TGG | - | chr2.4:5718668-5718687 | MS.gene31079:intron | 40.0% | |
| ACAACAACAAGATCAGGGTT+TGG | - | chr2.4:5718571-5718590 | MS.gene31079:intron | 40.0% | |
| AGTTCTTAACATGTGCCCTA+AGG | - | chr2.4:5721378-5721397 | MS.gene31079:CDS | 40.0% | |
| ATGAGAGGAATGGGAACTTT+AGG | - | chr2.4:5719569-5719588 | MS.gene31079:intron | 40.0% | |
| CACCCACAAGTAAATTCTTC+AGG | - | chr2.4:5718320-5718339 | MS.gene31079:intron | 40.0% | |
| CATGGTACCTTATCCATGTT+TGG | + | chr2.4:5720807-5720826 | None:intergenic | 40.0% | |
| GAAAAAACTCGCTCTGTTTC+TGG | + | chr2.4:5718437-5718456 | None:intergenic | 40.0% | |
| GATTAGAATGAAACAGGAGG+AGG | - | chr2.4:5719965-5719984 | MS.gene31079:intron | 40.0% | |
| GCAGGTTATGTTAGTATGAG+AGG | - | chr2.4:5719554-5719573 | MS.gene31079:intron | 40.0% | |
| GGGCCATTATATGTACATTG+AGG | - | chr2.4:5720375-5720394 | MS.gene31079:intron | 40.0% | |
| GTTCTTAACATGTGCCCTAA+GGG | - | chr2.4:5721379-5721398 | MS.gene31079:CDS | 40.0% | |
| TATGAGGAAGCTACAAGATC+TGG | - | chr2.4:5720779-5720798 | MS.gene31079:intron | 40.0% | |
| ! | AAGGTACCATGCTTCATGAT+TGG | - | chr2.4:5720816-5720835 | MS.gene31079:intron | 40.0% |
| ! | AGTCACTTTAGTCCCTGAAT+GGG | - | chr2.4:5720443-5720462 | MS.gene31079:intron | 40.0% |
| ! | AGTCACTTTAGTCCCTGAAT+GGG | + | chr2.4:5720462-5720443 | None:intergenic | 40.0% |
| ! | GAAGCTTTTGGTGAAAGTCA+TGG | - | chr2.4:5719731-5719750 | MS.gene31079:intron | 40.0% |
| ! | TAGTCACTTTAGTCCCTGAA+TGG | - | chr2.4:5720442-5720461 | MS.gene31079:intron | 40.0% |
| ! | TAGTCACTTTAGTCCCTGAA+TGG | + | chr2.4:5720461-5720442 | None:intergenic | 40.0% |
| ! | TTCATCTGAAATGGCAGCTA+TGG | - | chr2.4:5720033-5720052 | MS.gene31079:CDS | 40.0% |
| !! | AACCAAGTGGTTTGCTCAAA+TGG | + | chr2.4:5720241-5720260 | None:intergenic | 40.0% |
| !! | ACATTCTGATTTGGCAAAGG+TGG | + | chr2.4:5718716-5718735 | None:intergenic | 40.0% |
| !! | ATACCTGAGCTTGCTTTTGA+AGG | + | chr2.4:5720977-5720996 | None:intergenic | 40.0% |
| !! | ATAGCTGAAGTTGGTGACAA+AGG | - | chr2.4:5719683-5719702 | MS.gene31079:intron | 40.0% |
| ACAAGATCTGGTCCCAAACA+TGG | - | chr2.4:5720791-5720810 | MS.gene31079:intron | 45.0% | |
| ACTAACGGAGTCTGCATTCA+GGG | - | chr2.4:5720578-5720597 | MS.gene31079:intron | 45.0% | |
| AGACATAGTAGTTCACCAGC+TGG | - | chr2.4:5718824-5718843 | MS.gene31079:intron | 45.0% | |
| AGACCTTCAAAAGCAAGCTC+AGG | - | chr2.4:5720971-5720990 | MS.gene31079:intron | 45.0% | |
| AGATATGTTGGACTTGGCTG+TGG | - | chr2.4:5720938-5720957 | MS.gene31079:intron | 45.0% | |
| AGTGTTAACCTGTGCCCTTA+GGG | + | chr2.4:5721396-5721415 | None:intergenic | 45.0% | |
| ATGAAAATTCGTGCCAAGCG+AGG | - | chr2.4:5720088-5720107 | MS.gene31079:CDS | 45.0% | |
| CACAGCAGATATGTTGGACT+TGG | - | chr2.4:5720932-5720951 | MS.gene31079:intron | 45.0% | |
| GTTCCACCATGATTCTTCAC+TGG | + | chr2.4:5718788-5718807 | None:intergenic | 45.0% | |
| TAGTGTTAACCTGTGCCCTT+AGG | + | chr2.4:5721397-5721416 | None:intergenic | 45.0% | |
| TATGCAAAACAGTCCCTGCA+TGG | - | chr2.4:5720502-5720521 | MS.gene31079:intron | 45.0% | |
| TCCCTGAAATTGACCATGCA+GGG | + | chr2.4:5720518-5720537 | None:intergenic | 45.0% | |
| TCCCTGCATGGTCAATTTCA+GGG | - | chr2.4:5720514-5720533 | MS.gene31079:intron | 45.0% | |
| TCTGGTCCCAAACATGGATA+AGG | - | chr2.4:5720797-5720816 | MS.gene31079:intron | 45.0% | |
| TGCCCTTAAGGCACAAGTTA+AGG | - | chr2.4:5721251-5721270 | MS.gene31079:CDS | 45.0% | |
| TTGCAGCCAGTGAAGAATCA+TGG | - | chr2.4:5718779-5718798 | MS.gene31079:intron | 45.0% | |
| ! | CGCTTGGCACGAATTTTCAT+CGG | + | chr2.4:5720088-5720107 | None:intergenic | 45.0% |
| ! | GTCACTTTAGTCCCTGAATG+GGG | - | chr2.4:5720444-5720463 | MS.gene31079:intron | 45.0% |
| ! | GTCACTTTAGTCCCTGAATG+GGG | + | chr2.4:5720463-5720444 | None:intergenic | 45.0% |
| ! | GTTGTTGTTGCTGCTTGTGT+GGG | + | chr2.4:5721187-5721206 | None:intergenic | 45.0% |
| ! | TGTTGTTGTTGCTGCTTGTG+TGG | + | chr2.4:5721188-5721207 | None:intergenic | 45.0% |
| ACCCTTTCGGCAATGCTTCT+TGG | + | chr2.4:5720127-5720146 | None:intergenic | 50.0% | |
| CAGCCAGTGAAGAATCATGG+TGG | - | chr2.4:5718782-5718801 | MS.gene31079:intron | 50.0% | |
| CCCTTTCGGCAATGCTTCTT+GGG | + | chr2.4:5720126-5720145 | None:intergenic | 50.0% | |
| GACGAATCGTTCCCCATTCA+GGG | - | chr2.4:5720670-5720689 | MS.gene31079:intron | 50.0% | |
| GACGAATCGTTCCCCATTCA+GGG | + | chr2.4:5720689-5720670 | None:intergenic | 50.0% | |
| GACTAACGGAGTCTGCATTC+AGG | - | chr2.4:5720577-5720596 | MS.gene31079:intron | 50.0% | |
| GTCCCTGAAATTGACCATGC+AGG | + | chr2.4:5720519-5720538 | None:intergenic | 50.0% | |
| GTCCCTGCATGGTCAATTTC+AGG | - | chr2.4:5720513-5720532 | MS.gene31079:intron | 50.0% | |
| TGACGAATCGTTCCCCATTC+AGG | - | chr2.4:5720669-5720688 | MS.gene31079:intron | 50.0% | |
| TGACGAATCGTTCCCCATTC+AGG | + | chr2.4:5720688-5720669 | None:intergenic | 50.0% | |
| TTCGGCAATGCTTCTTGGGT+GGG | + | chr2.4:5720122-5720141 | None:intergenic | 50.0% | |
| TTTCGGCAATGCTTCTTGGG+TGG | + | chr2.4:5720123-5720142 | None:intergenic | 50.0% | |
| !! | ACCCAAGAAGCATTGCCGAA+AGG | - | chr2.4:5720122-5720141 | MS.gene31079:CDS | 50.0% |
| !! | CCCAAGAAGCATTGCCGAAA+GGG | - | chr2.4:5720123-5720142 | MS.gene31079:CDS | 50.0% |
| !! | CGCTCTGTTTCTGGACTTGA+TGG | + | chr2.4:5718428-5718447 | None:intergenic | 50.0% |
| !! | GAAGCATTGCCGAAAGGGTA+TGG | - | chr2.4:5720128-5720147 | MS.gene31079:CDS | 50.0% |
| !! | GACTTGTAAGGTACTGTCCG+TGG | - | chr2.4:5719183-5719202 | MS.gene31079:intron | 50.0% |
| ! | AACATGTGCCCTAAGGGCAC+AGG | - | chr2.4:5721385-5721404 | MS.gene31079:CDS | 55.0% |
| GGCAATGCTTCTTGGGTGGG+TGG | + | chr2.4:5720119-5720138 | None:intergenic | 60.0% | |
| GTGGGTGGCACAACCTCGCT+TGG | + | chr2.4:5720104-5720123 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.4 | gene | 5718293 | 5721608 | 5718293 | ID=MS.gene31079 |
| chr2.4 | mRNA | 5718293 | 5721608 | 5718293 | ID=MS.gene31079.t1;Parent=MS.gene31079 |
| chr2.4 | exon | 5721026 | 5721608 | 5721026 | ID=MS.gene31079.t1.exon1;Parent=MS.gene31079.t1 |
| chr2.4 | CDS | 5721026 | 5721608 | 5721026 | ID=cds.MS.gene31079.t1;Parent=MS.gene31079.t1 |
| chr2.4 | exon | 5720021 | 5720343 | 5720021 | ID=MS.gene31079.t1.exon2;Parent=MS.gene31079.t1 |
| chr2.4 | CDS | 5720021 | 5720343 | 5720021 | ID=cds.MS.gene31079.t1;Parent=MS.gene31079.t1 |
| chr2.4 | exon | 5719757 | 5719930 | 5719757 | ID=MS.gene31079.t1.exon3;Parent=MS.gene31079.t1 |
| chr2.4 | CDS | 5719757 | 5719930 | 5719757 | ID=cds.MS.gene31079.t1;Parent=MS.gene31079.t1 |
| chr2.4 | exon | 5719083 | 5719148 | 5719083 | ID=MS.gene31079.t1.exon4;Parent=MS.gene31079.t1 |
| chr2.4 | CDS | 5719083 | 5719148 | 5719083 | ID=cds.MS.gene31079.t1;Parent=MS.gene31079.t1 |
| chr2.4 | exon | 5718909 | 5718977 | 5718909 | ID=MS.gene31079.t1.exon5;Parent=MS.gene31079.t1 |
| chr2.4 | CDS | 5718909 | 5718977 | 5718909 | ID=cds.MS.gene31079.t1;Parent=MS.gene31079.t1 |
| chr2.4 | exon | 5718293 | 5718328 | 5718293 | ID=MS.gene31079.t1.exon6;Parent=MS.gene31079.t1 |
| chr2.4 | CDS | 5718293 | 5718328 | 5718293 | ID=cds.MS.gene31079.t1;Parent=MS.gene31079.t1 |
| Gene Sequence |
| Protein sequence |
