Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052042.t1 | XP_003597460.1 | 86.1 | 423 | 48 | 3 | 1 | 423 | 1 | 412 | 3.10E-180 | 641.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052042.t1 | Q9C690 | 35.5 | 420 | 209 | 9 | 5 | 416 | 12 | 377 | 1.5e-42 | 175.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052042.t1 | G7IUE7 | 86.1 | 423 | 48 | 3 | 1 | 423 | 1 | 412 | 2.2e-180 | 641.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene052042.t1 | TF | bHLH |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050156 | MS.gene052042 | 0.813716 | 2.22E-51 | -1.69E-46 |
| MS.gene050442 | MS.gene052042 | 0.806792 | 6.93E-50 | -1.69E-46 |
| MS.gene050844 | MS.gene052042 | 0.80112 | 1.05E-48 | -1.69E-46 |
| MS.gene051388 | MS.gene052042 | 0.812959 | 3.26E-51 | -1.69E-46 |
| MS.gene052042 | MS.gene052863 | 0.816991 | 4.16E-52 | -1.69E-46 |
| MS.gene052042 | MS.gene052896 | 0.83507 | 2.08E-56 | -1.69E-46 |
| MS.gene052042 | MS.gene053008 | 0.806085 | 9.76E-50 | -1.69E-46 |
| MS.gene052042 | MS.gene054467 | 0.829666 | 4.53E-55 | -1.69E-46 |
| MS.gene052042 | MS.gene054468 | 0.804732 | 1.88E-49 | -1.69E-46 |
| MS.gene052042 | MS.gene054472 | 0.810315 | 1.23E-50 | -1.69E-46 |
| MS.gene052042 | MS.gene055818 | 0.843225 | 1.60E-58 | -1.69E-46 |
| MS.gene052042 | MS.gene057026 | 0.80018 | 1.63E-48 | -1.69E-46 |
| MS.gene052042 | MS.gene059283 | 0.801046 | 1.08E-48 | -1.69E-46 |
| MS.gene052042 | MS.gene060322 | 0.821133 | 4.75E-53 | -1.69E-46 |
| MS.gene052042 | MS.gene06052 | 0.82887 | 7.07E-55 | -1.69E-46 |
| MS.gene052042 | MS.gene060685 | 0.807236 | 5.58E-50 | -1.69E-46 |
| MS.gene052042 | MS.gene060803 | 0.804288 | 2.32E-49 | -1.69E-46 |
| MS.gene052042 | MS.gene06697 | 0.803747 | 3.01E-49 | -1.69E-46 |
| MS.gene052042 | MS.gene06698 | 0.826701 | 2.35E-54 | -1.69E-46 |
| MS.gene052042 | MS.gene067163 | 0.814297 | 1.66E-51 | -1.69E-46 |
| MS.gene052042 | MS.gene06911 | 0.822568 | 2.21E-53 | -1.69E-46 |
| MS.gene052042 | MS.gene069868 | -0.823765 | 1.16E-53 | -1.69E-46 |
| MS.gene052042 | MS.gene070088 | -0.802862 | 4.59E-49 | -1.69E-46 |
| MS.gene052042 | MS.gene071700 | 0.801876 | 7.32E-49 | -1.69E-46 |
| MS.gene052042 | MS.gene072397 | -0.801166 | 1.02E-48 | -1.69E-46 |
| MS.gene052042 | MS.gene072677 | 0.805551 | 1.26E-49 | -1.69E-46 |
| MS.gene052042 | MS.gene073753 | 0.861956 | 7.12E-64 | -1.69E-46 |
| MS.gene052042 | MS.gene09740 | 0.811694 | 6.16E-51 | -1.69E-46 |
| MS.gene052042 | MS.gene20558 | 0.807626 | 4.61E-50 | -1.69E-46 |
| MS.gene052042 | MS.gene22311 | -0.810599 | 1.06E-50 | -1.69E-46 |
| MS.gene052042 | MS.gene24288 | 0.80777 | 4.30E-50 | -1.69E-46 |
| MS.gene052042 | MS.gene24642 | 0.877588 | 5.57E-69 | -1.69E-46 |
| MS.gene052042 | MS.gene24651 | 0.879495 | 1.19E-69 | -1.69E-46 |
| MS.gene052042 | MS.gene24908 | 0.801981 | 6.97E-49 | -1.69E-46 |
| MS.gene052042 | MS.gene25151 | 0.803037 | 4.22E-49 | -1.69E-46 |
| MS.gene052042 | MS.gene29159 | 0.803541 | 3.32E-49 | -1.69E-46 |
| MS.gene052042 | MS.gene30350 | 0.80003 | 1.74E-48 | -1.69E-46 |
| MS.gene052042 | MS.gene31079 | 0.887428 | 1.44E-72 | -1.69E-46 |
| MS.gene052042 | MS.gene31283 | 0.803983 | 2.69E-49 | -1.69E-46 |
| MS.gene052042 | MS.gene31397 | 0.815725 | 7.98E-52 | -1.69E-46 |
| MS.gene052042 | MS.gene33468 | 0.80845 | 3.08E-50 | -1.69E-46 |
| MS.gene052042 | MS.gene33527 | 0.802051 | 6.74E-49 | -1.69E-46 |
| MS.gene052042 | MS.gene34065 | 0.815925 | 7.20E-52 | -1.69E-46 |
| MS.gene052042 | MS.gene35822 | 0.822973 | 1.78E-53 | -1.69E-46 |
| MS.gene052042 | MS.gene35823 | 0.822512 | 2.28E-53 | -1.69E-46 |
| MS.gene052042 | MS.gene35824 | 0.817543 | 3.12E-52 | -1.69E-46 |
| MS.gene052042 | MS.gene35864 | 0.819285 | 1.26E-52 | -1.69E-46 |
| MS.gene052042 | MS.gene35867 | 0.806424 | 8.28E-50 | -1.69E-46 |
| MS.gene052042 | MS.gene37212 | 0.815005 | 1.15E-51 | -1.69E-46 |
| MS.gene052042 | MS.gene43973 | 0.815061 | 1.12E-51 | -1.69E-46 |
| MS.gene052042 | MS.gene44434 | 0.803575 | 3.27E-49 | -1.69E-46 |
| MS.gene052042 | MS.gene44502 | 0.808666 | 2.77E-50 | -1.69E-46 |
| MS.gene052042 | MS.gene45193 | 0.803154 | 3.99E-49 | -1.69E-46 |
| MS.gene052042 | MS.gene45194 | 0.801352 | 9.38E-49 | -1.69E-46 |
| MS.gene052042 | MS.gene45613 | 0.801245 | 9.86E-49 | -1.69E-46 |
| MS.gene052042 | MS.gene50031 | 0.808471 | 3.05E-50 | -1.69E-46 |
| MS.gene052042 | MS.gene51511 | 0.803279 | 3.76E-49 | -1.69E-46 |
| MS.gene052042 | MS.gene51788 | 0.836863 | 7.29E-57 | -1.69E-46 |
| MS.gene052042 | MS.gene51818 | 0.811537 | 6.66E-51 | -1.69E-46 |
| MS.gene052042 | MS.gene52525 | 0.801211 | 1.00E-48 | -1.69E-46 |
| MS.gene052042 | MS.gene52851 | 0.810244 | 1.27E-50 | -1.69E-46 |
| MS.gene052042 | MS.gene53321 | 0.834916 | 2.27E-56 | -1.69E-46 |
| MS.gene052042 | MS.gene53771 | 0.808436 | 3.10E-50 | -1.69E-46 |
| MS.gene052042 | MS.gene54686 | 0.803339 | 3.65E-49 | -1.69E-46 |
| MS.gene052042 | MS.gene54867 | 0.808385 | 3.18E-50 | -1.69E-46 |
| MS.gene052042 | MS.gene54876 | 0.818368 | 2.03E-52 | -1.69E-46 |
| MS.gene052042 | MS.gene55778 | 0.845457 | 4.01E-59 | -1.69E-46 |
| MS.gene052042 | MS.gene56537 | 0.804585 | 2.01E-49 | -1.69E-46 |
| MS.gene052042 | MS.gene56747 | 0.829214 | 5.84E-55 | -1.69E-46 |
| MS.gene052042 | MS.gene56748 | 0.814447 | 1.53E-51 | -1.69E-46 |
| MS.gene052042 | MS.gene57160 | -0.805331 | 1.41E-49 | -1.69E-46 |
| MS.gene052042 | MS.gene58547 | 0.810105 | 1.36E-50 | -1.69E-46 |
| MS.gene052042 | MS.gene58802 | 0.810485 | 1.13E-50 | -1.69E-46 |
| MS.gene052042 | MS.gene59840 | 0.804834 | 1.79E-49 | -1.69E-46 |
| MS.gene052042 | MS.gene60171 | 0.833165 | 6.24E-56 | -1.69E-46 |
| MS.gene052042 | MS.gene62393 | 0.800327 | 1.52E-48 | -1.69E-46 |
| MS.gene052042 | MS.gene69794 | 0.802612 | 5.17E-49 | -1.69E-46 |
| MS.gene052042 | MS.gene70895 | 0.80608 | 9.79E-50 | -1.69E-46 |
| MS.gene052042 | MS.gene71871 | 0.801022 | 1.10E-48 | -1.69E-46 |
| MS.gene052042 | MS.gene72268 | 0.80001 | 1.76E-48 | -1.69E-46 |
| MS.gene052042 | MS.gene73273 | 0.801955 | 7.05E-49 | -1.69E-46 |
| MS.gene052042 | MS.gene75557 | 0.817545 | 3.12E-52 | -1.69E-46 |
| MS.gene052042 | MS.gene76533 | -0.82991 | 3.95E-55 | -1.69E-46 |
| MS.gene052042 | MS.gene77015 | 0.808186 | 3.50E-50 | -1.69E-46 |
| MS.gene052042 | MS.gene77149 | 0.800663 | 1.30E-48 | -1.69E-46 |
| MS.gene052042 | MS.gene77188 | 0.816446 | 5.51E-52 | -1.69E-46 |
| MS.gene052042 | MS.gene77781 | 0.817186 | 3.76E-52 | -1.69E-46 |
| MS.gene052042 | MS.gene78368 | 0.892442 | 1.58E-74 | -1.69E-46 |
| MS.gene052042 | MS.gene81329 | 0.829788 | 4.23E-55 | -1.69E-46 |
| MS.gene052042 | MS.gene81370 | 0.824661 | 7.15E-54 | -1.69E-46 |
| MS.gene052042 | MS.gene82259 | 0.800054 | 1.73E-48 | -1.69E-46 |
| MS.gene052042 | MS.gene84326 | 0.809034 | 2.31E-50 | -1.69E-46 |
| MS.gene052042 | MS.gene84812 | 0.820545 | 6.48E-53 | -1.69E-46 |
| MS.gene052042 | MS.gene85149 | -0.82098 | 5.15E-53 | -1.69E-46 |
| MS.gene052042 | MS.gene86335 | 0.800624 | 1.32E-48 | -1.69E-46 |
| MS.gene052042 | MS.gene90022 | 0.802074 | 6.67E-49 | -1.69E-46 |
| MS.gene052042 | MS.gene90823 | 0.809852 | 1.54E-50 | -1.69E-46 |
| MS.gene052042 | MS.gene93311 | 0.833791 | 4.35E-56 | -1.69E-46 |
| MS.gene052042 | MS.gene96146 | 0.803062 | 4.17E-49 | -1.69E-46 |
| MS.gene052042 | MS.gene97344 | 0.818352 | 2.05E-52 | -1.69E-46 |
| MS.gene052042 | MS.gene98087 | 0.812491 | 4.13E-51 | -1.69E-46 |
| MS.gene052042 | MS.gene98088 | 0.810472 | 1.13E-50 | -1.69E-46 |
| MS.gene052042 | MS.gene99462 | 0.810327 | 1.22E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene041017 | MS.gene052042 | PPI |
| MS.gene84970 | MS.gene052042 | PPI |
| MS.gene95775 | MS.gene052042 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052042.t1 | MTR_2g098310 | 94.799 | 423 | 11 | 3 | 1 | 423 | 1 | 412 | 0.0 | 813 |
| MS.gene052042.t1 | MTR_2g098310 | 87.555 | 458 | 11 | 4 | 1 | 423 | 1 | 447 | 0.0 | 794 |
| MS.gene052042.t1 | MTR_2g098310 | 94.335 | 406 | 12 | 3 | 1 | 406 | 1 | 395 | 0.0 | 772 |
| MS.gene052042.t1 | MTR_2g098310 | 94.488 | 381 | 10 | 3 | 1 | 381 | 1 | 370 | 0.0 | 726 |
| MS.gene052042.t1 | MTR_2g098310 | 94.167 | 360 | 10 | 3 | 1 | 360 | 1 | 349 | 0.0 | 678 |
| MS.gene052042.t1 | MTR_4g065870 | 51.293 | 464 | 152 | 15 | 1 | 421 | 1 | 433 | 5.04e-145 | 420 |
| MS.gene052042.t1 | MTR_4g065870 | 50.336 | 447 | 148 | 15 | 1 | 404 | 1 | 416 | 4.18e-134 | 391 |
| MS.gene052042.t1 | MTR_4g065870 | 48.821 | 424 | 143 | 15 | 1 | 381 | 1 | 393 | 5.67e-119 | 353 |
| MS.gene052042.t1 | MTR_1g052470 | 40.455 | 440 | 169 | 13 | 3 | 419 | 5 | 374 | 1.96e-78 | 248 |
| MS.gene052042.t1 | MTR_3g028520 | 36.597 | 429 | 215 | 15 | 3 | 420 | 18 | 400 | 4.92e-56 | 190 |
| MS.gene052042.t1 | MTR_3g027650 | 36.597 | 429 | 215 | 15 | 3 | 420 | 18 | 400 | 4.92e-56 | 190 |
| MS.gene052042.t1 | MTR_3g027650 | 36.165 | 412 | 207 | 14 | 3 | 404 | 18 | 383 | 1.59e-49 | 173 |
| MS.gene052042.t1 | MTR_7g092540 | 43.529 | 255 | 119 | 5 | 168 | 419 | 87 | 319 | 3.01e-48 | 167 |
| MS.gene052042.t1 | MTR_8g036235 | 35.096 | 416 | 205 | 13 | 8 | 416 | 32 | 389 | 6.78e-46 | 163 |
| MS.gene052042.t1 | MTR_7g092540 | 44.215 | 242 | 110 | 5 | 168 | 406 | 87 | 306 | 2.32e-44 | 157 |
| MS.gene052042.t1 | MTR_1g052470 | 35.065 | 385 | 149 | 13 | 3 | 360 | 5 | 315 | 8.29e-43 | 153 |
| MS.gene052042.t1 | MTR_1g116790 | 61.404 | 114 | 39 | 2 | 308 | 419 | 231 | 341 | 2.58e-36 | 136 |
| MS.gene052042.t1 | MTR_3g027650 | 33.419 | 389 | 203 | 14 | 3 | 381 | 18 | 360 | 5.41e-35 | 133 |
| MS.gene052042.t1 | MTR_4g033295 | 69.318 | 88 | 25 | 1 | 329 | 416 | 106 | 191 | 2.06e-34 | 127 |
| MS.gene052042.t1 | MTR_4g033295 | 75.000 | 76 | 17 | 1 | 329 | 404 | 106 | 179 | 1.09e-30 | 116 |
| MS.gene052042.t1 | MTR_8g036235 | 32.234 | 394 | 198 | 14 | 8 | 394 | 32 | 363 | 3.82e-29 | 117 |
| MS.gene052042.t1 | MTR_6g052280 | 62.319 | 69 | 26 | 0 | 313 | 381 | 24 | 92 | 4.20e-21 | 89.0 |
| MS.gene052042.t1 | MTR_4g033295 | 79.245 | 53 | 9 | 1 | 329 | 381 | 106 | 156 | 3.17e-20 | 88.2 |
| MS.gene052042.t1 | MTR_4g131160 | 58.462 | 65 | 26 | 1 | 342 | 406 | 195 | 258 | 5.14e-16 | 79.7 |
| MS.gene052042.t1 | MTR_4g131160 | 58.462 | 65 | 26 | 1 | 342 | 406 | 198 | 261 | 5.94e-16 | 79.7 |
| MS.gene052042.t1 | MTR_1g017350 | 47.674 | 86 | 37 | 1 | 321 | 406 | 246 | 323 | 7.24e-16 | 79.3 |
| MS.gene052042.t1 | MTR_1g017350 | 47.674 | 86 | 37 | 1 | 321 | 406 | 246 | 323 | 7.48e-16 | 79.3 |
| MS.gene052042.t1 | MTR_1g017350 | 47.674 | 86 | 37 | 1 | 321 | 406 | 246 | 323 | 7.83e-16 | 79.3 |
| MS.gene052042.t1 | MTR_1g017350 | 47.674 | 86 | 37 | 1 | 321 | 406 | 246 | 323 | 8.61e-16 | 79.3 |
| MS.gene052042.t1 | MTR_8g012290 | 51.282 | 78 | 31 | 1 | 336 | 406 | 277 | 354 | 3.48e-15 | 77.8 |
| MS.gene052042.t1 | MTR_8g012290 | 51.282 | 78 | 31 | 1 | 336 | 406 | 277 | 354 | 3.49e-15 | 77.8 |
| MS.gene052042.t1 | MTR_3g116770 | 56.061 | 66 | 29 | 0 | 341 | 406 | 189 | 254 | 3.83e-15 | 77.0 |
| MS.gene052042.t1 | MTR_3g116770 | 56.061 | 66 | 29 | 0 | 341 | 406 | 189 | 254 | 3.84e-15 | 77.0 |
| MS.gene052042.t1 | MTR_7g053410 | 37.097 | 124 | 69 | 2 | 284 | 406 | 265 | 380 | 5.13e-15 | 77.4 |
| MS.gene052042.t1 | MTR_7g053410 | 37.097 | 124 | 69 | 2 | 284 | 406 | 265 | 380 | 5.13e-15 | 77.4 |
| MS.gene052042.t1 | MTR_3g498825 | 56.061 | 66 | 29 | 0 | 341 | 406 | 145 | 210 | 5.72e-15 | 75.9 |
| MS.gene052042.t1 | MTR_1g080890 | 55.385 | 65 | 28 | 1 | 342 | 406 | 192 | 255 | 1.39e-14 | 75.1 |
| MS.gene052042.t1 | MTR_8g062240 | 33.333 | 177 | 101 | 5 | 233 | 406 | 52 | 214 | 1.91e-14 | 73.6 |
| MS.gene052042.t1 | MTR_8g065740 | 56.250 | 64 | 28 | 0 | 343 | 406 | 305 | 368 | 2.38e-14 | 75.1 |
| MS.gene052042.t1 | MTR_4g070320 | 53.030 | 66 | 31 | 0 | 341 | 406 | 141 | 206 | 3.26e-14 | 73.9 |
| MS.gene052042.t1 | MTR_5g048860 | 48.052 | 77 | 32 | 1 | 330 | 406 | 360 | 428 | 3.68e-14 | 74.7 |
| MS.gene052042.t1 | MTR_8g099880 | 51.515 | 66 | 32 | 0 | 341 | 406 | 143 | 208 | 2.48e-13 | 70.9 |
| MS.gene052042.t1 | MTR_5g037250 | 43.529 | 85 | 40 | 1 | 322 | 406 | 99 | 175 | 1.20e-12 | 67.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052042.t1 | AT1G51140 | 38.389 | 422 | 194 | 13 | 5 | 416 | 12 | 377 | 3.10e-68 | 221 |
| MS.gene052042.t1 | AT2G42280 | 37.441 | 422 | 169 | 14 | 16 | 421 | 15 | 357 | 3.37e-66 | 215 |
| MS.gene052042.t1 | AT2G42280 | 37.717 | 403 | 156 | 14 | 16 | 402 | 15 | 338 | 1.38e-60 | 201 |
| MS.gene052042.t1 | AT1G35460 | 68.966 | 87 | 27 | 0 | 335 | 421 | 173 | 259 | 2.17e-37 | 137 |
| MS.gene052042.t1 | AT4G09180 | 62.136 | 103 | 39 | 0 | 319 | 421 | 160 | 262 | 2.27e-37 | 137 |
| MS.gene052042.t1 | AT2G43140 | 61.538 | 104 | 39 | 1 | 313 | 415 | 103 | 206 | 2.52e-36 | 132 |
| MS.gene052042.t1 | AT2G43140 | 38.281 | 256 | 109 | 10 | 175 | 415 | 82 | 303 | 1.24e-34 | 131 |
| MS.gene052042.t1 | AT2G42280 | 31.579 | 361 | 152 | 14 | 16 | 360 | 15 | 296 | 9.58e-31 | 120 |
| MS.gene052042.t1 | AT1G35460 | 80.851 | 47 | 9 | 0 | 335 | 381 | 173 | 219 | 7.32e-21 | 91.3 |
| MS.gene052042.t1 | AT2G24260 | 60.000 | 65 | 25 | 1 | 342 | 406 | 34 | 97 | 1.10e-16 | 79.7 |
| MS.gene052042.t1 | AT2G24260 | 60.000 | 65 | 25 | 1 | 342 | 406 | 137 | 200 | 2.94e-16 | 80.1 |
| MS.gene052042.t1 | AT4G34530 | 50.000 | 86 | 41 | 1 | 321 | 406 | 152 | 235 | 5.50e-16 | 79.0 |
| MS.gene052042.t1 | AT4G30980 | 58.462 | 65 | 26 | 1 | 342 | 406 | 129 | 192 | 6.54e-16 | 78.6 |
| MS.gene052042.t1 | AT4G30980 | 58.462 | 65 | 26 | 1 | 342 | 406 | 177 | 240 | 9.19e-16 | 78.6 |
| MS.gene052042.t1 | AT5G50915 | 56.061 | 66 | 29 | 0 | 341 | 406 | 134 | 199 | 1.51e-15 | 76.6 |
| MS.gene052042.t1 | AT5G50915 | 56.061 | 66 | 29 | 0 | 341 | 406 | 134 | 199 | 1.51e-15 | 76.6 |
| MS.gene052042.t1 | AT5G50915 | 56.061 | 66 | 29 | 0 | 341 | 406 | 134 | 199 | 1.54e-15 | 77.0 |
| MS.gene052042.t1 | AT5G50915 | 56.061 | 66 | 29 | 0 | 341 | 406 | 134 | 199 | 1.54e-15 | 77.0 |
| MS.gene052042.t1 | AT1G10120 | 49.398 | 83 | 34 | 1 | 324 | 406 | 195 | 269 | 3.03e-15 | 77.4 |
| MS.gene052042.t1 | AT1G10120 | 49.398 | 83 | 34 | 1 | 324 | 406 | 195 | 269 | 3.03e-15 | 77.4 |
| MS.gene052042.t1 | AT1G68920 | 54.545 | 66 | 30 | 0 | 341 | 406 | 300 | 365 | 4.71e-15 | 77.4 |
| MS.gene052042.t1 | AT1G68920 | 54.545 | 66 | 30 | 0 | 341 | 406 | 301 | 366 | 5.03e-15 | 77.4 |
| MS.gene052042.t1 | AT1G68920 | 54.545 | 66 | 30 | 0 | 341 | 406 | 301 | 366 | 5.03e-15 | 77.4 |
| MS.gene052042.t1 | AT1G68920 | 54.545 | 66 | 30 | 0 | 341 | 406 | 301 | 366 | 5.03e-15 | 77.4 |
| MS.gene052042.t1 | AT5G58010 | 53.846 | 65 | 29 | 1 | 342 | 406 | 98 | 161 | 5.31e-15 | 75.9 |
| MS.gene052042.t1 | AT1G25330 | 53.030 | 66 | 31 | 0 | 341 | 406 | 102 | 167 | 8.25e-15 | 73.9 |
| MS.gene052042.t1 | AT3G07340 | 54.545 | 66 | 30 | 0 | 341 | 406 | 256 | 321 | 8.40e-15 | 76.3 |
| MS.gene052042.t1 | AT3G07340 | 54.545 | 66 | 30 | 0 | 341 | 406 | 256 | 321 | 9.06e-15 | 76.3 |
| MS.gene052042.t1 | AT1G26260 | 56.061 | 66 | 29 | 0 | 341 | 406 | 199 | 264 | 1.67e-14 | 75.1 |
| MS.gene052042.t1 | AT1G26260 | 56.061 | 66 | 29 | 0 | 341 | 406 | 221 | 286 | 1.89e-14 | 75.1 |
| MS.gene052042.t1 | AT1G26260 | 56.061 | 66 | 29 | 0 | 341 | 406 | 221 | 286 | 1.89e-14 | 75.1 |
| MS.gene052042.t1 | AT1G26260 | 56.061 | 66 | 29 | 0 | 341 | 406 | 221 | 286 | 1.89e-14 | 75.1 |
| MS.gene052042.t1 | AT1G26260 | 56.061 | 66 | 29 | 0 | 341 | 406 | 221 | 286 | 1.89e-14 | 75.1 |
| MS.gene052042.t1 | AT1G26260 | 56.061 | 66 | 29 | 0 | 341 | 406 | 170 | 235 | 2.15e-14 | 74.3 |
| MS.gene052042.t1 | AT5G48560 | 53.030 | 66 | 31 | 0 | 341 | 406 | 299 | 364 | 2.78e-14 | 75.1 |
| MS.gene052042.t1 | AT5G48560 | 53.030 | 66 | 31 | 0 | 341 | 406 | 299 | 364 | 2.83e-14 | 74.7 |
| MS.gene052042.t1 | AT3G23690 | 51.515 | 66 | 32 | 0 | 341 | 406 | 189 | 254 | 1.69e-13 | 72.0 |
| MS.gene052042.t1 | AT1G59640 | 51.515 | 66 | 32 | 0 | 341 | 406 | 134 | 199 | 1.87e-13 | 70.5 |
| MS.gene052042.t1 | AT1G18400 | 50.000 | 66 | 33 | 0 | 341 | 406 | 143 | 208 | 1.98e-13 | 70.1 |
| MS.gene052042.t1 | AT1G73830 | 51.562 | 64 | 31 | 0 | 343 | 406 | 147 | 210 | 2.09e-13 | 70.5 |
| MS.gene052042.t1 | AT1G73830 | 51.562 | 64 | 31 | 0 | 343 | 406 | 147 | 210 | 2.21e-13 | 70.5 |
| MS.gene052042.t1 | AT1G18400 | 51.562 | 64 | 31 | 0 | 343 | 406 | 145 | 208 | 3.91e-13 | 69.7 |
| MS.gene052042.t1 | AT2G18300 | 50.000 | 64 | 32 | 0 | 343 | 406 | 185 | 248 | 6.34e-13 | 70.1 |
| MS.gene052042.t1 | AT2G18300 | 50.000 | 64 | 32 | 0 | 343 | 406 | 185 | 248 | 7.10e-13 | 69.7 |
| MS.gene052042.t1 | AT1G59640 | 53.125 | 64 | 30 | 0 | 343 | 406 | 136 | 199 | 7.24e-13 | 69.7 |
| MS.gene052042.t1 | AT2G18300 | 50.000 | 64 | 32 | 0 | 343 | 406 | 185 | 248 | 9.71e-13 | 69.7 |
| MS.gene052042.t1 | AT4G36540 | 48.485 | 66 | 34 | 0 | 341 | 406 | 139 | 204 | 1.41e-12 | 68.6 |
| MS.gene052042.t1 | AT4G36540 | 48.485 | 66 | 34 | 0 | 341 | 406 | 139 | 204 | 1.56e-12 | 68.6 |
| MS.gene052042.t1 | AT2G42300 | 47.222 | 72 | 37 | 1 | 336 | 406 | 177 | 248 | 2.07e-12 | 68.2 |
| MS.gene052042.t1 | AT2G42300 | 47.222 | 72 | 37 | 1 | 336 | 406 | 177 | 248 | 2.83e-12 | 67.4 |
| MS.gene052042.t1 | AT3G57800 | 46.970 | 66 | 35 | 0 | 341 | 406 | 202 | 267 | 1.00e-11 | 66.6 |
| MS.gene052042.t1 | AT5G62610 | 46.970 | 66 | 35 | 0 | 341 | 406 | 151 | 216 | 1.02e-11 | 65.9 |
| MS.gene052042.t1 | AT5G62610 | 46.970 | 66 | 35 | 0 | 341 | 406 | 151 | 216 | 1.02e-11 | 65.9 |
Find 67 sgRNAs with CRISPR-Local
Find 144 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCCATTTCAGATGAAGTATT+TGG | 0.195078 | 2.2:+4405724 | None:intergenic |
| TTCCTTGAAGTAGAAAATTT+TGG | 0.197445 | 2.2:+4406132 | None:intergenic |
| CGCTCTGTTTCTGGACTTGA+TGG | 0.209227 | 2.2:+4407334 | None:intergenic |
| TCTCAAATTAACATTGAAAA+TGG | 0.226358 | 2.2:-4406908 | MS.gene052042:intron |
| ACCCTTTCGGCAATGCTTCT+TGG | 0.230259 | 2.2:+4405625 | None:intergenic |
| CCAAATCAGAATGTTTCTTC+TGG | 0.278715 | 2.2:-4407040 | MS.gene052042:CDS |
| TCAAGGTTTATTAACAGTTT+TGG | 0.288729 | 2.2:-4407304 | MS.gene052042:CDS |
| CCCTTTCGGCAATGCTTCTT+GGG | 0.290663 | 2.2:+4405626 | None:intergenic |
| CATGGTACCTTATCCATGTT+TGG | 0.320678 | 2.2:+4405199 | None:intergenic |
| TAAATTGGCTTCAGGTTAGA+AGG | 0.325551 | 2.2:-4405264 | MS.gene052042:intron |
| CCAGAAGAAACATTCTGATT+TGG | 0.339425 | 2.2:+4407040 | None:intergenic |
| CAAGCACAAGTAAATTCTTC+AGG | 0.344703 | 2.2:-4407439 | MS.gene052042:CDS |
| ATCAATAATCCATACCCTTT+CGG | 0.345815 | 2.2:+4405612 | None:intergenic |
| AATGAAGAAAATGAAGCTTT+TGG | 0.348594 | 2.2:-4406030 | MS.gene052042:CDS |
| ATGAGAGGAATGGGAACTTT+AGG | 0.362085 | 2.2:-4406180 | MS.gene052042:CDS |
| GCCAAATACTTCATCTGAAA+TGG | 0.370699 | 2.2:-4405725 | MS.gene052042:CDS |
| AAGTCATGGTAACGAATATA+TGG | 0.373522 | 2.2:-4406004 | MS.gene052042:CDS |
| AATGTTTCTTCTGGTTTAGA+TGG | 0.373647 | 2.2:-4407031 | MS.gene052042:CDS |
| AGGACATTCTAATTCTCCTT+TGG | 0.389735 | 2.2:-4405764 | MS.gene052042:CDS |
| CCCAAGAAGCATTGCCGAAA+GGG | 0.390620 | 2.2:-4405626 | MS.gene052042:intron |
| AATCAATCAAACTATTCATC+AGG | 0.391137 | 2.2:-4406102 | MS.gene052042:CDS |
| TAACGAATATATGGATTATC+AGG | 0.397601 | 2.2:-4405995 | MS.gene052042:CDS |
| AACTCTGTTCCTTCTTCTCA+TGG | 0.404649 | 2.2:-4407094 | MS.gene052042:CDS |
| TTCGGCAATGCTTCTTGGGT+GGG | 0.408101 | 2.2:+4405630 | None:intergenic |
| GTGGTTGATTAGAATGAAAC+AGG | 0.414031 | 2.2:-4405790 | MS.gene052042:intron |
| TGGATTATCAGGTTGATACT+TGG | 0.436048 | 2.2:-4405984 | MS.gene052042:CDS |
| TTCATCTGAAATGGCAGCTA+TGG | 0.443352 | 2.2:-4405716 | MS.gene052042:CDS |
| CTAAAATTAGTGAGCGTATG+AGG | 0.443405 | 2.2:-4405240 | MS.gene052042:CDS |
| AGCAGCAACAACAACAATAA+CGG | 0.452797 | 2.2:-4404865 | None:intergenic |
| ATGGTACCTTATCCATGTTT+GGG | 0.462347 | 2.2:+4405200 | None:intergenic |
| TATGTTAGTATGAGAGGAAT+GGG | 0.466243 | 2.2:-4406189 | MS.gene052042:CDS |
| TATGAGGAAGCTACAAGATC+TGG | 0.475457 | 2.2:-4405224 | MS.gene052042:CDS |
| TTTCGGCAATGCTTCTTGGG+TGG | 0.478638 | 2.2:+4405629 | None:intergenic |
| TTTCCACCATGATTCTTCAC+TGG | 0.490723 | 2.2:+4406977 | None:intergenic |
| TCTGGTCCCAAACATGGATA+AGG | 0.497918 | 2.2:-4405206 | MS.gene052042:intron |
| ACAACAACAAGATCAGGGTT+TGG | 0.506743 | 2.2:-4407191 | MS.gene052042:CDS |
| GTGGGTGGCACAACCTCGCT+TGG | 0.508441 | 2.2:+4405648 | None:intergenic |
| GGCAATGCTTCTTGGGTGGG+TGG | 0.511007 | 2.2:+4405633 | None:intergenic |
| CACAGCAGATATGTTGGACT+TGG | 0.518004 | 2.2:-4405071 | MS.gene052042:CDS |
| GCAGGTTATGTTAGTATGAG+AGG | 0.524043 | 2.2:-4406195 | MS.gene052042:intron |
| ATTTGAGAAAATAATCCAGC+TGG | 0.524222 | 2.2:+4406923 | None:intergenic |
| GGATTATCAGGTTGATACTT+GGG | 0.529420 | 2.2:-4405983 | MS.gene052042:CDS |
| AACAAACACAGCAGATATGT+TGG | 0.533839 | 2.2:-4405077 | MS.gene052042:CDS |
| TTCAACAGTGAAAGAAGAAG+AGG | 0.534360 | 2.2:-4407239 | MS.gene052042:CDS |
| ATGAAAATTCGTGCCAAGCG+AGG | 0.540193 | 2.2:-4405661 | MS.gene052042:CDS |
| ACATTCTGATTTGGCAAAGG+TGG | 0.545087 | 2.2:+4407049 | None:intergenic |
| AGATATGTTGGACTTGGCTG+TGG | 0.548724 | 2.2:-4405065 | MS.gene052042:CDS |
| AGACCTTCAAAAGCAAGCTC+AGG | 0.554514 | 2.2:-4405032 | MS.gene052042:intron |
| GAAACATTCTGATTTGGCAA+AGG | 0.556566 | 2.2:+4407046 | None:intergenic |
| TTATGTTAGTATGAGAGGAA+TGG | 0.558938 | 2.2:-4406190 | MS.gene052042:CDS |
| AGACATAGTAGTTCACCAGC+TGG | 0.569208 | 2.2:-4406938 | MS.gene052042:CDS |
| TTGCAGCCAGTGAAGAATCA+TGG | 0.569699 | 2.2:-4406983 | MS.gene052042:CDS |
| AACAGTGAAAGAAGAAGAGG+AGG | 0.570389 | 2.2:-4407236 | MS.gene052042:CDS |
| ATGTCAACAATAGCTGAAGT+TGG | 0.572331 | 2.2:-4406075 | MS.gene052042:CDS |
| ACAAGATCTGGTCCCAAACA+TGG | 0.576424 | 2.2:-4405212 | MS.gene052042:CDS |
| ATCAATCAAACTATTCATCA+GGG | 0.580340 | 2.2:-4406101 | MS.gene052042:CDS |
| ACCCAAGAAGCATTGCCGAA+AGG | 0.582792 | 2.2:-4405627 | MS.gene052042:CDS |
| ATAGCTGAAGTTGGTGACAA+AGG | 0.592602 | 2.2:-4406066 | MS.gene052042:CDS |
| TAAATTCTTCAGGTTTAACA+AGG | 0.602353 | 2.2:-4407429 | MS.gene052042:CDS |
| TTCAATCAACAATGAACATG+TGG | 0.608573 | 2.2:-4407167 | MS.gene052042:CDS |
| GATTAGAATGAAACAGGAGG+AGG | 0.610884 | 2.2:-4405784 | MS.gene052042:intron |
| ATGATGTCTGAAAATGTTGG+TGG | 0.620048 | 2.2:-4405949 | MS.gene052042:CDS |
| ATACTCAATTGATGAGCCAA+AGG | 0.626112 | 2.2:+4405748 | None:intergenic |
| GTTGATTAGAATGAAACAGG+AGG | 0.640015 | 2.2:-4405787 | MS.gene052042:intron |
| ATGTTGTTGAAATATGAACT+TGG | 0.650570 | 2.2:+4407394 | None:intergenic |
| GAAATGATGTCTGAAAATGT+TGG | 0.668717 | 2.2:-4405952 | MS.gene052042:CDS |
| CAGCCAGTGAAGAATCATGG+TGG | 0.713307 | 2.2:-4406980 | MS.gene052042:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATATTAGTTATTACTTATT+AGG | - | chr2.2:4406041-4406060 | MS.gene052042:CDS | 10.0% |
| !! | TTAAAGAAATAAAATAGTTT+GGG | + | chr2.2:4406080-4406099 | None:intergenic | 10.0% |
| !!! | TTAAAATTTAACATTTTTCT+AGG | + | chr2.2:4405867-4405886 | None:intergenic | 10.0% |
| !! | AAACAAAAGAAAAGTAATAT+AGG | + | chr2.2:4406911-4406930 | None:intergenic | 15.0% |
| !! | AACAAAAGAAAAGTAATATA+GGG | + | chr2.2:4406910-4406929 | None:intergenic | 15.0% |
| !! | ATATATTAAAGATCTCTTTA+GGG | - | chr2.2:4405920-4405939 | MS.gene052042:CDS | 15.0% |
| !! | CAAAAACTAAATATGTAAAT+TGG | + | chr2.2:4406947-4406966 | None:intergenic | 15.0% |
| !! | GTTAAAGAAATAAAATAGTT+TGG | + | chr2.2:4406081-4406100 | None:intergenic | 15.0% |
| !! | TAAAGAAATAAAATAGTTTG+GGG | + | chr2.2:4406079-4406098 | None:intergenic | 15.0% |
| !! | TATATATTAAAGATCTCTTT+AGG | - | chr2.2:4405919-4405938 | MS.gene052042:CDS | 15.0% |
| !!! | ATATTACTTTTCTTTTGTTT+AGG | - | chr2.2:4406911-4406930 | MS.gene052042:CDS | 15.0% |
| !!! | ATTTTAAAAAATTTCTTGTC+AGG | - | chr2.2:4405880-4405899 | MS.gene052042:intron | 15.0% |
| !!! | TATTTTTTTCTCTTTAAAGT+AGG | + | chr2.2:4405837-4405856 | None:intergenic | 15.0% |
| !!! | TTTTAAAAAATTTCTTGTCA+GGG | - | chr2.2:4405881-4405900 | MS.gene052042:intron | 15.0% |
| !! | CATTCACATAAATTAATGTA+TGG | + | chr2.2:4407197-4407216 | None:intergenic | 20.0% |
| !! | TCTCAAATTAACATTGAAAA+TGG | - | chr2.2:4405426-4405445 | MS.gene052042:intron | 20.0% |
| !! | TGAAGAAAATGAATTGTAAA+AGG | - | chr2.2:4405707-4405726 | MS.gene052042:CDS | 20.0% |
| !! | TTTAAAAAATTTCTTGTCAG+GGG | - | chr2.2:4405882-4405901 | MS.gene052042:intron | 20.0% |
| !!! | ACTATTAAGACATGATTTTT+GGG | - | chr2.2:4406973-4406992 | MS.gene052042:CDS | 20.0% |
| !!! | TACTATTAAGACATGATTTT+TGG | - | chr2.2:4406972-4406991 | MS.gene052042:CDS | 20.0% |
| !!! | TTTTAATATTTGCTCTTATG+TGG | - | chr2.2:4405954-4405973 | MS.gene052042:CDS | 20.0% |
| ! | AATAACTAATATTCCCACTA+GGG | + | chr2.2:4406034-4406053 | None:intergenic | 25.0% |
| ! | AATCAATCAAACTATTCATC+AGG | - | chr2.2:4406232-4406251 | MS.gene052042:intron | 25.0% |
| ! | ATCAATCAAACTATTCATCA+GGG | - | chr2.2:4406233-4406252 | MS.gene052042:intron | 25.0% |
| ! | ATGTTGTTGAAATATGAACT+TGG | + | chr2.2:4404943-4404962 | None:intergenic | 25.0% |
| ! | CTCTTAACACATCATTAAAT+TGG | - | chr2.2:4407055-4407074 | MS.gene052042:CDS | 25.0% |
| ! | TAATAACTAATATTCCCACT+AGG | + | chr2.2:4406035-4406054 | None:intergenic | 25.0% |
| ! | TAATCAAGTGTAATTACACT+TGG | + | chr2.2:4405614-4405633 | None:intergenic | 25.0% |
| ! | TAGAATTATCTATAACCAAG+TGG | + | chr2.2:4406873-4406892 | None:intergenic | 25.0% |
| ! | TCTAATAAAATCCACCATTT+CGG | + | chr2.2:4405659-4405678 | None:intergenic | 25.0% |
| ! | TCTTAAGTGTAGTTTCTTAA+TGG | - | chr2.2:4406497-4406516 | MS.gene052042:intron | 25.0% |
| ! | TGATGTTATGCAAGTTTAAT+TGG | - | chr2.2:4406117-4406136 | MS.gene052042:CDS | 25.0% |
| ! | TGTGACTAAAATTTCAGATT+TGG | + | chr2.2:4405539-4405558 | None:intergenic | 25.0% |
| ! | TGTTTGTTTGCTTCAAAAAA+GGG | + | chr2.2:4407245-4407264 | None:intergenic | 25.0% |
| !! | AACCAAAATTTTCTACTTCA+AGG | - | chr2.2:4406200-4406219 | MS.gene052042:intron | 25.0% |
| !! | AATGAAGAAAATGAAGCTTT+TGG | - | chr2.2:4406304-4406323 | MS.gene052042:intron | 25.0% |
| !! | ATGAATTGTAAAAGGTTTTC+TGG | - | chr2.2:4405715-4405734 | MS.gene052042:CDS | 25.0% |
| !! | CTATTAAGACATGATTTTTG+GGG | - | chr2.2:4406974-4406993 | MS.gene052042:CDS | 25.0% |
| !! | GATTCAAAACAACAATTTTC+TGG | - | chr2.2:4406430-4406449 | MS.gene052042:intron | 25.0% |
| !! | TAAATTCTTCAGGTTTAACA+AGG | - | chr2.2:4404905-4404924 | MS.gene052042:CDS | 25.0% |
| !! | TAACGAATATATGGATTATC+AGG | - | chr2.2:4406339-4406358 | MS.gene052042:intron | 25.0% |
| !! | TCAAGGTTTATTAACAGTTT+TGG | - | chr2.2:4405030-4405049 | MS.gene052042:intron | 25.0% |
| !! | TTCCTTGAAGTAGAAAATTT+TGG | + | chr2.2:4406205-4406224 | None:intergenic | 25.0% |
| !!! | ATTTTCTGGTTTAAATGTTC+AGG | - | chr2.2:4406444-4406463 | MS.gene052042:intron | 25.0% |
| !!! | TTAGATGGAAGTTTTTCAAT+GGG | - | chr2.2:4405318-4405337 | MS.gene052042:intron | 25.0% |
| !!! | TTTACCTTTTAGTTCTTATG+AGG | - | chr2.2:4406757-4406776 | MS.gene052042:intron | 25.0% |
| !!! | TTTAGATGGAAGTTTTTCAA+TGG | - | chr2.2:4405317-4405336 | MS.gene052042:intron | 25.0% |
| ATCAATAATCCATACCCTTT+CGG | + | chr2.2:4406725-4406744 | None:intergenic | 30.0% | |
| ATTTGAGAAAATAATCCAGC+TGG | + | chr2.2:4405414-4405433 | None:intergenic | 30.0% | |
| CTCGTTTCTGTTAAAATAGA+GGG | + | chr2.2:4405501-4405520 | None:intergenic | 30.0% | |
| GAAATGATGTCTGAAAATGT+TGG | - | chr2.2:4406382-4406401 | MS.gene052042:intron | 30.0% | |
| GAACCTCAATGTACATATAA+TGG | + | chr2.2:4407000-4407019 | None:intergenic | 30.0% | |
| GTGTTTGTTTGCTTCAAAAA+AGG | + | chr2.2:4407246-4407265 | None:intergenic | 30.0% | |
| TATGTTAGTATGAGAGGAAT+GGG | - | chr2.2:4406145-4406164 | MS.gene052042:CDS | 30.0% | |
| TCTCGTTTCTGTTAAAATAG+AGG | + | chr2.2:4405502-4405521 | None:intergenic | 30.0% | |
| TGATAAAAACCATGAGAAGA+AGG | + | chr2.2:4405252-4405271 | None:intergenic | 30.0% | |
| TTAAAACCAATCATGAAGCA+TGG | + | chr2.2:4407156-4407175 | None:intergenic | 30.0% | |
| TTATGTTAGTATGAGAGGAA+TGG | - | chr2.2:4406144-4406163 | MS.gene052042:CDS | 30.0% | |
| TTCAATCAACAATGAACATG+TGG | - | chr2.2:4405167-4405186 | MS.gene052042:intron | 30.0% | |
| ! | AAGTCATGGTAACGAATATA+TGG | - | chr2.2:4406330-4406349 | MS.gene052042:intron | 30.0% |
| ! | CATTTGACATGATTTTGTTG+TGG | - | chr2.2:4406525-4406544 | MS.gene052042:intron | 30.0% |
| ! | TTTTCTTTGTTACGCACTTT+TGG | - | chr2.2:4405474-4405493 | MS.gene052042:intron | 30.0% |
| !! | AATGTTTCTTCTGGTTTAGA+TGG | - | chr2.2:4405303-4405322 | MS.gene052042:intron | 30.0% |
| !! | GTTTTTCAATGGGAGTTAAT+AGG | - | chr2.2:4405328-4405347 | MS.gene052042:intron | 30.0% |
| !! | TTTCTCTTTAAAGTAGGACA+AGG | + | chr2.2:4405831-4405850 | None:intergenic | 30.0% |
| !!! | TACTGATTTTTGATCCGAAA+TGG | - | chr2.2:4405642-4405661 | MS.gene052042:CDS | 30.0% |
| AAAGTAGGACAAGGAAAACT+GGG | + | chr2.2:4405822-4405841 | None:intergenic | 35.0% | |
| AACAAACACAGCAGATATGT+TGG | - | chr2.2:4407257-4407276 | MS.gene052042:CDS | 35.0% | |
| ACAACAACAACAACAAGATC+AGG | - | chr2.2:4405137-4405156 | MS.gene052042:intron | 35.0% | |
| AGGACATTCTAATTCTCCTT+TGG | - | chr2.2:4406570-4406589 | MS.gene052042:intron | 35.0% | |
| ATACTCAATTGATGAGCCAA+AGG | + | chr2.2:4406589-4406608 | None:intergenic | 35.0% | |
| ATGATGTCTGAAAATGTTGG+TGG | - | chr2.2:4406385-4406404 | MS.gene052042:intron | 35.0% | |
| ATGGTACCTTATCCATGTTT+GGG | + | chr2.2:4407137-4407156 | None:intergenic | 35.0% | |
| ATGTCAACAATAGCTGAAGT+TGG | - | chr2.2:4406259-4406278 | MS.gene052042:intron | 35.0% | |
| CAACAACAACAACAAGATCA+GGG | - | chr2.2:4405138-4405157 | MS.gene052042:intron | 35.0% | |
| CAAGCACAAGTAAATTCTTC+AGG | - | chr2.2:4404895-4404914 | MS.gene052042:CDS | 35.0% | |
| CCAAATCAGAATGTTTCTTC+TGG | - | chr2.2:4405294-4405313 | MS.gene052042:intron | 35.0% | |
| CCAGAAGAAACATTCTGATT+TGG | + | chr2.2:4405297-4405316 | None:intergenic | 35.0% | |
| CTAAAATTAGTGAGCGTATG+AGG | - | chr2.2:4407094-4407113 | MS.gene052042:CDS | 35.0% | |
| CTCAAATGGCTAATAAGCTT+CGG | + | chr2.2:4406846-4406865 | None:intergenic | 35.0% | |
| CTTGCCTCATAAGAACTAAA+AGG | + | chr2.2:4406764-4406783 | None:intergenic | 35.0% | |
| GCCAAATACTTCATCTGAAA+TGG | - | chr2.2:4406609-4406628 | MS.gene052042:intron | 35.0% | |
| GGTAGAATACTATCTAGCAT+TGG | - | chr2.2:4406465-4406484 | MS.gene052042:intron | 35.0% | |
| GGTGAAAAAAAAACCCTAGT+GGG | - | chr2.2:4406018-4406037 | MS.gene052042:CDS | 35.0% | |
| GTGGTTGATTAGAATGAAAC+AGG | - | chr2.2:4406544-4406563 | MS.gene052042:intron | 35.0% | |
| GTTATGCAAGTTTAATTGGC+AGG | - | chr2.2:4406121-4406140 | MS.gene052042:CDS | 35.0% | |
| GTTGATTAGAATGAAACAGG+AGG | - | chr2.2:4406547-4406566 | MS.gene052042:intron | 35.0% | |
| TAAAGTAGGACAAGGAAAAC+TGG | + | chr2.2:4405823-4405842 | None:intergenic | 35.0% | |
| TACTAGTATGTGGACTTGTA+AGG | - | chr2.2:4405755-4405774 | MS.gene052042:CDS | 35.0% | |
| TAGTACACGTTACTAGTATG+TGG | - | chr2.2:4405745-4405764 | MS.gene052042:CDS | 35.0% | |
| TATTGAAGTTGTACATGCCA+CGG | + | chr2.2:4405787-4405806 | None:intergenic | 35.0% | |
| TGAAGCTTCTATACAAGTGT+TGG | + | chr2.2:4407417-4407436 | None:intergenic | 35.0% | |
| TGGTGAAAAAAAAACCCTAG+TGG | - | chr2.2:4406017-4406036 | MS.gene052042:CDS | 35.0% | |
| TTCAACAGTGAAAGAAGAAG+AGG | - | chr2.2:4405095-4405114 | MS.gene052042:intron | 35.0% | |
| ! | CACATCATTAAATTGGCTTC+AGG | - | chr2.2:4407062-4407081 | MS.gene052042:CDS | 35.0% |
| ! | GCCATTTCAGATGAAGTATT+TGG | + | chr2.2:4406613-4406632 | None:intergenic | 35.0% |
| ! | TAAATTGGCTTCAGGTTAGA+AGG | - | chr2.2:4407070-4407089 | MS.gene052042:CDS | 35.0% |
| ! | TGATTTTTGATCCGAAATGG+TGG | - | chr2.2:4405645-4405664 | MS.gene052042:CDS | 35.0% |
| ! | TTTGTACTTGTTGCAACAAG+TGG | - | chr2.2:4405997-4406016 | MS.gene052042:CDS | 35.0% |
| !! | GAAACATTCTGATTTGGCAA+AGG | + | chr2.2:4405291-4405310 | None:intergenic | 35.0% |
| !! | GGATTATCAGGTTGATACTT+GGG | - | chr2.2:4406351-4406370 | MS.gene052042:intron | 35.0% |
| !! | TGGATTATCAGGTTGATACT+TGG | - | chr2.2:4406350-4406369 | MS.gene052042:intron | 35.0% |
| !!! | AAACAGAGCGAGTTTTTTCA+AGG | - | chr2.2:4405013-4405032 | MS.gene052042:intron | 35.0% |
| AACAGTGAAAGAAGAAGAGG+AGG | - | chr2.2:4405098-4405117 | MS.gene052042:intron | 40.0% | |
| AACTCTGTTCCTTCTTCTCA+TGG | - | chr2.2:4405240-4405259 | MS.gene052042:CDS | 40.0% | |
| ACAACAACAAGATCAGGGTT+TGG | - | chr2.2:4405143-4405162 | MS.gene052042:intron | 40.0% | |
| ATGAGAGGAATGGGAACTTT+AGG | - | chr2.2:4406154-4406173 | MS.gene052042:CDS | 40.0% | |
| CATGGTACCTTATCCATGTT+TGG | + | chr2.2:4407138-4407157 | None:intergenic | 40.0% | |
| GAAAAAACTCGCTCTGTTTC+TGG | + | chr2.2:4405012-4405031 | None:intergenic | 40.0% | |
| GATTAGAATGAAACAGGAGG+AGG | - | chr2.2:4406550-4406569 | MS.gene052042:intron | 40.0% | |
| GCAGGTTATGTTAGTATGAG+AGG | - | chr2.2:4406139-4406158 | MS.gene052042:CDS | 40.0% | |
| GGGCCATTATATGTACATTG+AGG | - | chr2.2:4406994-4407013 | MS.gene052042:CDS | 40.0% | |
| TATGAGGAAGCTACAAGATC+TGG | - | chr2.2:4407110-4407129 | MS.gene052042:CDS | 40.0% | |
| TGGCTAATAAGCTTCGGTTA+AGG | + | chr2.2:4406840-4406859 | None:intergenic | 40.0% | |
| TTTCCACCATGATTCTTCAC+TGG | + | chr2.2:4405360-4405379 | None:intergenic | 40.0% | |
| ! | AAGGTACCATGCTTCATGAT+TGG | - | chr2.2:4407147-4407166 | MS.gene052042:CDS | 40.0% |
| ! | GAAGCTTTTGGTGAAAGTCA+TGG | - | chr2.2:4406316-4406335 | MS.gene052042:intron | 40.0% |
| ! | TTCATCTGAAATGGCAGCTA+TGG | - | chr2.2:4406618-4406637 | MS.gene052042:intron | 40.0% |
| !! | AACCAAGTGGTTTGCTCAAA+TGG | + | chr2.2:4406860-4406879 | None:intergenic | 40.0% |
| !! | ACATTCTGATTTGGCAAAGG+TGG | + | chr2.2:4405288-4405307 | None:intergenic | 40.0% |
| !! | ATACCTGAGCTTGCTTTTGA+AGG | + | chr2.2:4407308-4407327 | None:intergenic | 40.0% |
| !! | ATAGCTGAAGTTGGTGACAA+AGG | - | chr2.2:4406268-4406287 | MS.gene052042:intron | 40.0% |
| ACAAGATCTGGTCCCAAACA+TGG | - | chr2.2:4407122-4407141 | MS.gene052042:CDS | 45.0% | |
| AGACATAGTAGTTCACCAGC+TGG | - | chr2.2:4405396-4405415 | MS.gene052042:intron | 45.0% | |
| AGACCTTCAAAAGCAAGCTC+AGG | - | chr2.2:4407302-4407321 | MS.gene052042:CDS | 45.0% | |
| AGATATGTTGGACTTGGCTG+TGG | - | chr2.2:4407269-4407288 | MS.gene052042:CDS | 45.0% | |
| AGCCATTTGAGCAAACCACT+TGG | - | chr2.2:4406855-4406874 | MS.gene052042:intron | 45.0% | |
| ATGAAAATTCGTGCCAAGCG+AGG | - | chr2.2:4406673-4406692 | MS.gene052042:intron | 45.0% | |
| CACAGCAGATATGTTGGACT+TGG | - | chr2.2:4407263-4407282 | MS.gene052042:CDS | 45.0% | |
| TCTGGTCCCAAACATGGATA+AGG | - | chr2.2:4407128-4407147 | MS.gene052042:CDS | 45.0% | |
| TTGCAGCCAGTGAAGAATCA+TGG | - | chr2.2:4405351-4405370 | MS.gene052042:intron | 45.0% | |
| ! | CGCTTGGCACGAATTTTCAT+CGG | + | chr2.2:4406673-4406692 | None:intergenic | 45.0% |
| ACCCTTTCGGCAATGCTTCT+TGG | + | chr2.2:4406712-4406731 | None:intergenic | 50.0% | |
| CAGCCAGTGAAGAATCATGG+TGG | - | chr2.2:4405354-4405373 | MS.gene052042:intron | 50.0% | |
| CCCTTTCGGCAATGCTTCTT+GGG | + | chr2.2:4406711-4406730 | None:intergenic | 50.0% | |
| TTCGGCAATGCTTCTTGGGT+GGG | + | chr2.2:4406707-4406726 | None:intergenic | 50.0% | |
| TTTCGGCAATGCTTCTTGGG+TGG | + | chr2.2:4406708-4406727 | None:intergenic | 50.0% | |
| !! | ACCCAAGAAGCATTGCCGAA+AGG | - | chr2.2:4406707-4406726 | MS.gene052042:intron | 50.0% |
| !! | CCCAAGAAGCATTGCCGAAA+GGG | - | chr2.2:4406708-4406727 | MS.gene052042:intron | 50.0% |
| !! | CGCTCTGTTTCTGGACTTGA+TGG | + | chr2.2:4405003-4405022 | None:intergenic | 50.0% |
| !! | GAAGCATTGCCGAAAGGGTA+TGG | - | chr2.2:4406713-4406732 | MS.gene052042:intron | 50.0% |
| !! | GACTTGTAAGGTACTGTCCG+TGG | - | chr2.2:4405767-4405786 | MS.gene052042:CDS | 50.0% |
| GGCAATGCTTCTTGGGTGGG+TGG | + | chr2.2:4406704-4406723 | None:intergenic | 60.0% | |
| GTGGGTGGCACAACCTCGCT+TGG | + | chr2.2:4406689-4406708 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.2 | gene | 4404868 | 4407488 | 4404868 | ID=MS.gene052042 |
| chr2.2 | mRNA | 4404868 | 4407488 | 4404868 | ID=MS.gene052042.t1;Parent=MS.gene052042 |
| chr2.2 | exon | 4406909 | 4407488 | 4406909 | ID=MS.gene052042.t1.exon1;Parent=MS.gene052042.t1 |
| chr2.2 | CDS | 4406909 | 4407488 | 4406909 | ID=cds.MS.gene052042.t1;Parent=MS.gene052042.t1 |
| chr2.2 | exon | 4405891 | 4406213 | 4405891 | ID=MS.gene052042.t1.exon2;Parent=MS.gene052042.t1 |
| chr2.2 | CDS | 4405891 | 4406213 | 4405891 | ID=cds.MS.gene052042.t1;Parent=MS.gene052042.t1 |
| chr2.2 | exon | 4405627 | 4405800 | 4405627 | ID=MS.gene052042.t1.exon3;Parent=MS.gene052042.t1 |
| chr2.2 | CDS | 4405627 | 4405800 | 4405627 | ID=cds.MS.gene052042.t1;Parent=MS.gene052042.t1 |
| chr2.2 | exon | 4405207 | 4405272 | 4405207 | ID=MS.gene052042.t1.exon4;Parent=MS.gene052042.t1 |
| chr2.2 | CDS | 4405207 | 4405272 | 4405207 | ID=cds.MS.gene052042.t1;Parent=MS.gene052042.t1 |
| chr2.2 | exon | 4405033 | 4405101 | 4405033 | ID=MS.gene052042.t1.exon5;Parent=MS.gene052042.t1 |
| chr2.2 | CDS | 4405033 | 4405101 | 4405033 | ID=cds.MS.gene052042.t1;Parent=MS.gene052042.t1 |
| chr2.2 | exon | 4404868 | 4404927 | 4404868 | ID=MS.gene052042.t1.exon6;Parent=MS.gene052042.t1 |
| chr2.2 | CDS | 4404868 | 4404927 | 4404868 | ID=cds.MS.gene052042.t1;Parent=MS.gene052042.t1 |
| Gene Sequence |
| Protein sequence |
