Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04185.t1 | XP_024635442.1 | 96.5 | 521 | 16 | 2 | 3 | 522 | 50 | 569 | 1.80E-283 | 984.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04185.t1 | Q9LG26 | 55.4 | 491 | 210 | 2 | 3 | 493 | 167 | 648 | 4.6e-150 | 532.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04185.t1 | A0A396ISR3 | 96.5 | 521 | 16 | 2 | 3 | 522 | 168 | 687 | 1.3e-283 | 984.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene79599 | MS.gene04185 | PPI |
| MS.gene04185 | MS.gene058147 | PPI |
| MS.gene04185 | MS.gene024734 | PPI |
| MS.gene91519 | MS.gene04185 | PPI |
| MS.gene04185 | MS.gene21710 | PPI |
| MS.gene21912 | MS.gene04185 | PPI |
| MS.gene04185 | MS.gene021698 | PPI |
| MS.gene043239 | MS.gene04185 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04185.t1 | MTR_3g460830 | 97.925 | 241 | 5 | 0 | 282 | 522 | 5 | 245 | 1.14e-177 | 499 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04185.t1 | AT1G55870 | 55.397 | 491 | 210 | 2 | 3 | 493 | 167 | 648 | 0.0 | 538 |
| MS.gene04185.t1 | AT1G55870 | 55.819 | 464 | 198 | 1 | 30 | 493 | 8 | 464 | 0.0 | 521 |
| MS.gene04185.t1 | AT1G55870 | 61.159 | 345 | 127 | 1 | 149 | 493 | 1 | 338 | 3.97e-148 | 430 |
| MS.gene04185.t1 | AT1G55870 | 61.159 | 345 | 127 | 1 | 149 | 493 | 1 | 338 | 3.97e-148 | 430 |
| MS.gene04185.t1 | AT3G25430 | 25.051 | 487 | 279 | 19 | 3 | 470 | 153 | 572 | 7.21e-25 | 108 |
| MS.gene04185.t1 | AT3G25430 | 24.846 | 487 | 263 | 20 | 3 | 470 | 153 | 555 | 4.76e-22 | 100 |
Find 84 sgRNAs with CRISPR-Local
Find 382 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCCTTGTATTCAATCAATT+TGG | 0.228163 | 3.3:+48460483 | None:intergenic |
| TTGAGAACATTGTTATTATC+TGG | 0.233378 | 3.3:-48460837 | MS.gene04185:CDS |
| CTCCTAAATCACTGCATAAC+TGG | 0.233696 | 3.3:+48461040 | None:intergenic |
| GCCCAGTTATGCAGTGATTT+AGG | 0.257302 | 3.3:-48461042 | MS.gene04185:CDS |
| TGCTTCCCTTTCTTGTTCTC+TGG | 0.265913 | 3.3:+48465393 | None:intergenic |
| TTTCTAAATTAAATGATGTT+AGG | 0.268163 | 3.3:-48465327 | MS.gene04185:CDS |
| TGTAACTAGCTCGGTGCTTT+TGG | 0.289237 | 3.3:+48464055 | None:intergenic |
| CTCGTACTTCACTTGCCTTC+AGG | 0.295775 | 3.3:+48460800 | None:intergenic |
| GCATCCGCTGGGAAAACTTT+TGG | 0.305585 | 3.3:-48460620 | MS.gene04185:CDS |
| AGAAACTCTGTTTGCTGATC+AGG | 0.312532 | 3.3:-48460533 | MS.gene04185:CDS |
| TCACTTGCCTTCAGGTTAGA+AGG | 0.335224 | 3.3:+48460808 | None:intergenic |
| TTTACATTCTCTTCTATAGT+TGG | 0.344960 | 3.3:+48460433 | None:intergenic |
| CATCCAGCTCTCAAGCTTGA+TGG | 0.345888 | 3.3:-48465139 | MS.gene04185:CDS |
| AATGTGAACAATGAGGTTTC+TGG | 0.349688 | 3.3:-48464862 | MS.gene04185:CDS |
| AACAAGAAAGGGAAGCAATA+AGG | 0.360923 | 3.3:-48465387 | MS.gene04185:CDS |
| CATGTCTACAGCAAATTTAT+CGG | 0.389497 | 3.3:-48464254 | MS.gene04185:CDS |
| CTGTATACACAACTATTTGT+TGG | 0.390531 | 3.3:+48464836 | None:intergenic |
| AAGTTGAAGTTGATGATTCA+AGG | 0.401865 | 3.3:-48464013 | MS.gene04185:intron |
| TTCTAAATTAAATGATGTTA+GGG | 0.404843 | 3.3:-48465326 | MS.gene04185:CDS |
| ATGGCGTGATGGGTTATTAC+AGG | 0.412013 | 3.3:-48465239 | MS.gene04185:CDS |
| GGATGAACTAAACTTACTTC+TGG | 0.413972 | 3.3:-48464806 | MS.gene04185:intron |
| TGTTCTCAAACAAAATTTGT+TGG | 0.415338 | 3.3:+48460851 | None:intergenic |
| TGAGAACATTGTTATTATCT+GGG | 0.418628 | 3.3:-48460836 | MS.gene04185:CDS |
| AGCGGATGCAAAACCGAGAT+TGG | 0.425664 | 3.3:+48460634 | None:intergenic |
| TTGCACCCTTGGATAATGTC+AGG | 0.427328 | 3.3:-48465430 | None:intergenic |
| GATGCTTATAAAGAAATTTG+TGG | 0.441063 | 3.3:-48460568 | MS.gene04185:CDS |
| GGTTATTACAGGAGCAAAAT+CGG | 0.443983 | 3.3:-48465228 | MS.gene04185:CDS |
| TGTATACACAACTATTTGTT+GGG | 0.447606 | 3.3:+48464837 | None:intergenic |
| TGTCTGAACACTCACTATCA+TGG | 0.455862 | 3.3:+48465350 | None:intergenic |
| TTGGAGCCAGCAGCAATTTG+TGG | 0.460161 | 3.3:+48464074 | None:intergenic |
| ATTTATCCAGAGAACAAGAA+AGG | 0.462100 | 3.3:-48465399 | MS.gene04185:CDS |
| CCTGCCTCATGCTTGCCTCC+AGG | 0.474138 | 3.3:+48461096 | None:intergenic |
| TGTAGTTTCTGTCTACCACT+TGG | 0.491252 | 3.3:-48460746 | MS.gene04185:CDS |
| GCAAACAGAGTTTCTGATAA+GGG | 0.491406 | 3.3:+48460541 | None:intergenic |
| TCAGAACAGAAGTTGATAGT+TGG | 0.502195 | 3.3:-48464384 | MS.gene04185:CDS |
| TATATCTTAGTTATATGCAT+GGG | 0.502273 | 3.3:-48460945 | MS.gene04185:CDS |
| GGATATGATGCTTTCATGAC+TGG | 0.504444 | 3.3:-48461075 | MS.gene04185:CDS |
| AGCAAACAGAGTTTCTGATA+AGG | 0.504846 | 3.3:+48460540 | None:intergenic |
| GAAAGCTTAGAGAGAAGTAA+TGG | 0.511591 | 3.3:-48460658 | MS.gene04185:CDS |
| TCAGCTTAAGTTGATTCAGT+TGG | 0.517220 | 3.3:-48465104 | MS.gene04185:intron |
| CCTGGAGGCAAGCATGAGGC+AGG | 0.518137 | 3.3:-48461096 | MS.gene04185:CDS |
| AACCAAATTGATTGAATACA+AGG | 0.519448 | 3.3:-48460485 | MS.gene04185:CDS |
| AGATCGTCCAGCTGGAATCC+TGG | 0.520249 | 3.3:-48461114 | MS.gene04185:CDS |
| GGCGAAATCCAACTGCAGCT+TGG | 0.522198 | 3.3:+48464427 | None:intergenic |
| TCCTAAATCACTGCATAACT+GGG | 0.523426 | 3.3:+48461041 | None:intergenic |
| TTTATCCAGAGAACAAGAAA+GGG | 0.523900 | 3.3:-48465398 | MS.gene04185:CDS |
| GCTGATCAGGCAAAGGCAGT+TGG | 0.534922 | 3.3:-48460520 | MS.gene04185:CDS |
| AATCGGTCAGACCAAATTCA+AGG | 0.539111 | 3.3:-48465211 | MS.gene04185:CDS |
| TTTGTTGGTACCGTCTATTG+AGG | 0.541793 | 3.3:+48460866 | None:intergenic |
| GTCTGAACACTCACTATCAT+GGG | 0.545278 | 3.3:+48465351 | None:intergenic |
| GTATTTGCAGATCGTCCAGC+TGG | 0.545385 | 3.3:-48461122 | MS.gene04185:intron |
| AAGTTCAGTGAATGGCGTGA+TGG | 0.547765 | 3.3:-48465250 | MS.gene04185:CDS |
| CTATATCTTAGTTATATGCA+TGG | 0.549824 | 3.3:-48460946 | MS.gene04185:CDS |
| AGTTCAGTGAATGGCGTGAT+GGG | 0.550536 | 3.3:-48465249 | MS.gene04185:CDS |
| TTCCTTCAACAAAAGAAAGT+CGG | 0.553574 | 3.3:+48460678 | None:intergenic |
| TGAAAGATAAGTTCAGTGAA+TGG | 0.553673 | 3.3:-48465258 | MS.gene04185:CDS |
| GATATTATAGATCTAAATAC+CGG | 0.557851 | 3.3:-48460922 | MS.gene04185:CDS |
| GGGATTTCCTTCTAACCTGA+AGG | 0.558626 | 3.3:-48460815 | MS.gene04185:CDS |
| CTTGCCTCCAGGATTCCAGC+TGG | 0.558683 | 3.3:+48461107 | None:intergenic |
| CAAAGGCAGTTGGCATGAAG+TGG | 0.559051 | 3.3:-48460510 | MS.gene04185:CDS |
| TCAACTTCTGTTCTGATGAA+AGG | 0.559958 | 3.3:+48464391 | None:intergenic |
| GAGAAGTAATGGTCCAATCT+CGG | 0.560192 | 3.3:-48460647 | MS.gene04185:CDS |
| ATGAAGATCCAAGCTGCAGT+TGG | 0.563917 | 3.3:-48464435 | MS.gene04185:CDS |
| AATCCATCAAGCTTGAGAGC+TGG | 0.565036 | 3.3:+48465136 | None:intergenic |
| TGCACCCTTGGATAATGTCA+GGG | 0.580831 | 3.3:-48465429 | None:intergenic |
| TTGGGATGGTGTAACTAGCT+CGG | 0.581065 | 3.3:+48464046 | None:intergenic |
| CGTCTATTGAGGTTATAGCT+TGG | 0.587684 | 3.3:+48460877 | None:intergenic |
| GAGAACATTGTTATTATCTG+GGG | 0.588898 | 3.3:-48460835 | MS.gene04185:CDS |
| TCTGTTTGCTGATCAGGCAA+AGG | 0.603663 | 3.3:-48460527 | MS.gene04185:CDS |
| ATGTCTGCCATGTTGACAGA+AGG | 0.603946 | 3.3:+48465298 | None:intergenic |
| TTATATCAATGTGAACAATG+AGG | 0.605285 | 3.3:-48464869 | MS.gene04185:CDS |
| TTGAATACAAGGAATCATTG+AGG | 0.627788 | 3.3:-48460474 | MS.gene04185:CDS |
| GGACATACCTTCTGTCAACA+TGG | 0.630760 | 3.3:-48465305 | MS.gene04185:CDS |
| GAATCCTGGAGGCAAGCATG+AGG | 0.641547 | 3.3:-48461100 | MS.gene04185:CDS |
| AATAGTTGTGTATACAGACT+CGG | 0.645056 | 3.3:-48464830 | MS.gene04185:CDS |
| ATATCTTAGTTATATGCATG+GGG | 0.647653 | 3.3:-48460944 | MS.gene04185:CDS |
| ACACTGCTGTTGCATCCAAG+TGG | 0.655012 | 3.3:+48460731 | None:intergenic |
| CAAGCTATAACCTCAATAGA+CGG | 0.655852 | 3.3:-48460876 | MS.gene04185:CDS |
| ATGAAAGGAGATCAATAACA+TGG | 0.667767 | 3.3:+48464406 | None:intergenic |
| TGGAAAGCACTTGTTAACAG+AGG | 0.695071 | 3.3:+48464199 | None:intergenic |
| ACAAAACATAGAAAATGCAG+AGG | 0.706266 | 3.3:+48464097 | None:intergenic |
| AATCAACTTAAGCTGACGTG+AGG | 0.725978 | 3.3:+48465111 | None:intergenic |
| TCGTCCAGCTGGAATCCTGG+AGG | 0.728618 | 3.3:-48461111 | MS.gene04185:CDS |
| AGTTGTGTATACAGACTCGG+AGG | 0.742262 | 3.3:-48464827 | MS.gene04185:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTAAATCAATATCTAAA+TGG | + | chr3.3:48462168-48462187 | None:intergenic | 10.0% |
| !! | AATTAAATCAATATCTAAAT+GGG | + | chr3.3:48462167-48462186 | None:intergenic | 10.0% |
| !! | AAATTGAAAATGCATATAAT+TGG | - | chr3.3:48462341-48462360 | MS.gene04185:intron | 15.0% |
| !! | AATTGAAAATGCATATAATT+GGG | - | chr3.3:48462342-48462361 | MS.gene04185:intron | 15.0% |
| !! | ATTAAATCAATATCTAAATG+GGG | + | chr3.3:48462166-48462185 | None:intergenic | 15.0% |
| !! | TTCTAAATTAAATGATGTTA+GGG | - | chr3.3:48460500-48460519 | MS.gene04185:CDS | 15.0% |
| !! | TTTCTAAATTAAATGATGTT+AGG | - | chr3.3:48460499-48460518 | MS.gene04185:CDS | 15.0% |
| !!! | ATTTTTTCTTTTTACTGATT+TGG | - | chr3.3:48462867-48462886 | MS.gene04185:intron | 15.0% |
| !!! | TCATCTTTTAATATTATTTG+TGG | + | chr3.3:48461191-48461210 | None:intergenic | 15.0% |
| !!! | TTTTTTTCAAATTTTCACTT+TGG | - | chr3.3:48462949-48462968 | MS.gene04185:intron | 15.0% |
| !! | AAAAAAGGGATAAAATATAG+GGG | + | chr3.3:48462132-48462151 | None:intergenic | 20.0% |
| !! | CAAAAAAGGGATAAAATATA+GGG | + | chr3.3:48462133-48462152 | None:intergenic | 20.0% |
| !! | CAAATAAAAAAACTGTACAA+TGG | - | chr3.3:48464474-48464493 | MS.gene04185:CDS | 20.0% |
| !! | CCACATATCAAAAATTATAA+AGG | + | chr3.3:48461076-48461095 | None:intergenic | 20.0% |
| !! | GAGATTAAAGAACATTTATT+AGG | + | chr3.3:48461329-48461348 | None:intergenic | 20.0% |
| !! | GATATTATAGATCTAAATAC+CGG | - | chr3.3:48464904-48464923 | MS.gene04185:intron | 20.0% |
| !! | GTAAAAAGAAAAAATGTACA+AGG | + | chr3.3:48462862-48462881 | None:intergenic | 20.0% |
| !! | TATATCTTAGTTATATGCAT+GGG | - | chr3.3:48464881-48464900 | MS.gene04185:CDS | 20.0% |
| !! | TCAAAAAAGGGATAAAATAT+AGG | + | chr3.3:48462134-48462153 | None:intergenic | 20.0% |
| !! | TTAAATCAATATCTAAATGG+GGG | + | chr3.3:48462165-48462184 | None:intergenic | 20.0% |
| !! | TTTCATTAGAAAAAGTGAAA+AGG | - | chr3.3:48463180-48463199 | MS.gene04185:intron | 20.0% |
| !!! | ACTCTAGTTTTAGTTATAAA+TGG | - | chr3.3:48461165-48461184 | MS.gene04185:intron | 20.0% |
| !!! | CCTTTATAATTTTTGATATG+TGG | - | chr3.3:48461073-48461092 | MS.gene04185:CDS | 20.0% |
| !!! | GATTATAAGTTTGAAATTTC+AGG | - | chr3.3:48460906-48460925 | MS.gene04185:CDS | 20.0% |
| !!! | TTTTACTGTTAAAAAAACAG+AGG | + | chr3.3:48463152-48463171 | None:intergenic | 20.0% |
| ! | AAAATGCTCATTTGTAACTA+AGG | - | chr3.3:48463075-48463094 | MS.gene04185:intron | 25.0% |
| ! | AAATGCTCATTTGTAACTAA+GGG | - | chr3.3:48463076-48463095 | MS.gene04185:intron | 25.0% |
| ! | AAATTACGTAGACAGAAAAA+TGG | + | chr3.3:48464525-48464544 | None:intergenic | 25.0% |
| ! | AACCAAATTGATTGAATACA+AGG | - | chr3.3:48465341-48465360 | MS.gene04185:CDS | 25.0% |
| ! | ATAAAAAAACTGTACAATGG+CGG | - | chr3.3:48464477-48464496 | MS.gene04185:intron | 25.0% |
| ! | ATATCTTAGTTATATGCATG+GGG | - | chr3.3:48464882-48464901 | MS.gene04185:CDS | 25.0% |
| ! | ATGAAAGGAACAATATAAAG+AGG | + | chr3.3:48464669-48464688 | None:intergenic | 25.0% |
| ! | ATTGTTTCAAATATCCACTT+TGG | + | chr3.3:48462244-48462263 | None:intergenic | 25.0% |
| ! | ATTTGAAGATAGTTGAAACT+TGG | - | chr3.3:48463776-48463795 | MS.gene04185:intron | 25.0% |
| ! | CAAAATAATATAGCCTGTTA+AGG | + | chr3.3:48461505-48461524 | None:intergenic | 25.0% |
| ! | CTATATCTTAGTTATATGCA+TGG | - | chr3.3:48464880-48464899 | MS.gene04185:CDS | 25.0% |
| ! | GATGCTTATAAAGAAATTTG+TGG | - | chr3.3:48465258-48465277 | MS.gene04185:CDS | 25.0% |
| ! | GGAAGGAAAATTAATATAAG+AGG | + | chr3.3:48464625-48464644 | None:intergenic | 25.0% |
| ! | TGAAAGAGTTGTAAAAATGA+AGG | + | chr3.3:48461937-48461956 | None:intergenic | 25.0% |
| ! | TGTATACACAACTATTTGTT+GGG | + | chr3.3:48460992-48461011 | None:intergenic | 25.0% |
| ! | TGTTCTCAAACAAAATTTGT+TGG | + | chr3.3:48464978-48464997 | None:intergenic | 25.0% |
| ! | TTAGTCAAAATCTGAATTGA+GGG | - | chr3.3:48463018-48463037 | MS.gene04185:intron | 25.0% |
| ! | TTATATCAATGTGAACAATG+AGG | - | chr3.3:48460957-48460976 | MS.gene04185:CDS | 25.0% |
| ! | TTCAACTATCTTCAAATCAA+GGG | + | chr3.3:48463773-48463792 | None:intergenic | 25.0% |
| ! | TTCCTTGTATTCAATCAATT+TGG | + | chr3.3:48465346-48465365 | None:intergenic | 25.0% |
| ! | TTGAAAAACAATGAATTGTC+AGG | + | chr3.3:48462601-48462620 | None:intergenic | 25.0% |
| ! | TTTACATTCTCTTCTATAGT+TGG | + | chr3.3:48465396-48465415 | None:intergenic | 25.0% |
| ! | TTTAGTCAAAATCTGAATTG+AGG | - | chr3.3:48463017-48463036 | MS.gene04185:intron | 25.0% |
| ! | TTTATTTGCCATAAAAGAGT+AGG | + | chr3.3:48464462-48464481 | None:intergenic | 25.0% |
| ! | TTTCAACTATCTTCAAATCA+AGG | + | chr3.3:48463774-48463793 | None:intergenic | 25.0% |
| ! | TTTGAAGATAGTTGAAACTT+GGG | - | chr3.3:48463777-48463796 | MS.gene04185:intron | 25.0% |
| !! | AAATTGCTCATTTGAAACTA+CGG | + | chr3.3:48462106-48462125 | None:intergenic | 25.0% |
| !! | AGAATTTTCAACTGTATAAC+CGG | + | chr3.3:48464926-48464945 | None:intergenic | 25.0% |
| !! | ATTTGTCTTTTCTCTCATAT+TGG | - | chr3.3:48460790-48460809 | MS.gene04185:CDS | 25.0% |
| !! | TAGTTTCAAATGAGCAATTT+TGG | - | chr3.3:48462106-48462125 | MS.gene04185:intron | 25.0% |
| !! | TCTTCACATTTTCAGAATTA+GGG | + | chr3.3:48462380-48462399 | None:intergenic | 25.0% |
| !! | TGAGAACATTGTTATTATCT+GGG | - | chr3.3:48464990-48465009 | MS.gene04185:intron | 25.0% |
| !! | TTAGTTACAAATGAGCATTT+TGG | + | chr3.3:48463076-48463095 | None:intergenic | 25.0% |
| !! | TTCAACTTTTACTTTCACTT+GGG | + | chr3.3:48461801-48461820 | None:intergenic | 25.0% |
| !! | TTCTTCACATTTTCAGAATT+AGG | + | chr3.3:48462381-48462400 | None:intergenic | 25.0% |
| !! | TTGAGAACATTGTTATTATC+TGG | - | chr3.3:48464989-48465008 | MS.gene04185:intron | 25.0% |
| !!! | AATTGATTTGAGAAACTAGA+GGG | + | chr3.3:48462068-48462087 | None:intergenic | 25.0% |
| !!! | AATTTTGACTAAATTAGCTG+AGG | - | chr3.3:48462183-48462202 | MS.gene04185:intron | 25.0% |
| !!! | ACATTTTTTGTTGGTATGAA+AGG | + | chr3.3:48464684-48464703 | None:intergenic | 25.0% |
| !!! | CTAATTGTTTTGAAGATTCA+TGG | + | chr3.3:48464825-48464844 | None:intergenic | 25.0% |
| !!! | GAGTGTTTATCTAAAGTTTT+CGG | - | chr3.3:48465048-48465067 | MS.gene04185:intron | 25.0% |
| !!! | TGCAAATACACATTTTTTGT+TGG | + | chr3.3:48464693-48464712 | None:intergenic | 25.0% |
| !!! | TTTTAGCTTAATTGCACTTT+TGG | - | chr3.3:48462041-48462060 | MS.gene04185:intron | 25.0% |
| AAACACACTATAACTAAGCT+AGG | - | chr3.3:48463709-48463728 | MS.gene04185:intron | 30.0% | |
| AATAGTTGTGTATACAGACT+CGG | - | chr3.3:48460996-48461015 | MS.gene04185:CDS | 30.0% | |
| ACAAAACATAGAAAATGCAG+AGG | + | chr3.3:48461732-48461751 | None:intergenic | 30.0% | |
| ACACAATTAGAAAATGAGAG+GGG | - | chr3.3:48463109-48463128 | MS.gene04185:intron | 30.0% | |
| AGGTAAAAAAGGAGAATCAA+AGG | - | chr3.3:48461359-48461378 | MS.gene04185:intron | 30.0% | |
| ATAGTATTGTGCATGTACTA+AGG | - | chr3.3:48460858-48460877 | MS.gene04185:CDS | 30.0% | |
| ATATAACCTTTGCATTACTG+GGG | + | chr3.3:48461984-48462003 | None:intergenic | 30.0% | |
| ATCATCAACTACGAAGATAA+GGG | - | chr3.3:48463394-48463413 | MS.gene04185:intron | 30.0% | |
| ATCTTTCTATCTATCCAGTT+AGG | - | chr3.3:48463425-48463444 | MS.gene04185:intron | 30.0% | |
| ATGAAAGGAGATCAATAACA+TGG | + | chr3.3:48461423-48461442 | None:intergenic | 30.0% | |
| ATGTGAAGAATACGAATTAG+AGG | - | chr3.3:48462391-48462410 | MS.gene04185:intron | 30.0% | |
| ATTTATCCAGAGAACAAGAA+AGG | - | chr3.3:48460427-48460446 | MS.gene04185:CDS | 30.0% | |
| CACACAATTAGAAAATGAGA+GGG | - | chr3.3:48463108-48463127 | MS.gene04185:intron | 30.0% | |
| CATATAACCTTTGCATTACT+GGG | + | chr3.3:48461985-48462004 | None:intergenic | 30.0% | |
| CATGTCTACAGCAAATTTAT+CGG | - | chr3.3:48461572-48461591 | MS.gene04185:intron | 30.0% | |
| CATTTATTAGGAACCCAATA+CGG | + | chr3.3:48461317-48461336 | None:intergenic | 30.0% | |
| CCTATGCTAATAGAGTATAA+AGG | + | chr3.3:48461216-48461235 | None:intergenic | 30.0% | |
| CCTTTATACTCTATTAGCAT+AGG | - | chr3.3:48461213-48461232 | MS.gene04185:intron | 30.0% | |
| CTGTATACACAACTATTTGT+TGG | + | chr3.3:48460993-48461012 | None:intergenic | 30.0% | |
| GACACATGTATCATTTCTAT+TGG | + | chr3.3:48462975-48462994 | None:intergenic | 30.0% | |
| GGTAAAAAAGGAGAATCAAA+GGG | - | chr3.3:48461360-48461379 | MS.gene04185:intron | 30.0% | |
| GTTCTTTAATCTCTTGTAGA+AGG | - | chr3.3:48461336-48461355 | MS.gene04185:intron | 30.0% | |
| TCACACAATTAGAAAATGAG+AGG | - | chr3.3:48463107-48463126 | MS.gene04185:intron | 30.0% | |
| TCTGATATAAGAGATGTAGT+TGG | + | chr3.3:48463735-48463754 | None:intergenic | 30.0% | |
| TCTTTCTATCTATCCAGTTA+GGG | - | chr3.3:48463426-48463445 | MS.gene04185:intron | 30.0% | |
| TGAAAGATAAGTTCAGTGAA+TGG | - | chr3.3:48460568-48460587 | MS.gene04185:CDS | 30.0% | |
| TGAAGACAAATTGAAGATGA+GGG | + | chr3.3:48462628-48462647 | None:intergenic | 30.0% | |
| TGACATTCTTAATCCTTAAC+AGG | - | chr3.3:48461489-48461508 | MS.gene04185:intron | 30.0% | |
| TGATTGTAGCAAATGTGTTT+AGG | - | chr3.3:48463215-48463234 | MS.gene04185:intron | 30.0% | |
| TGCTGTAACATCAATAAACT+CGG | + | chr3.3:48461294-48461313 | None:intergenic | 30.0% | |
| TTAAAAATGTCGATGAACGA+TGG | + | chr3.3:48462661-48462680 | None:intergenic | 30.0% | |
| TTCCTTCAACAAAAGAAAGT+CGG | + | chr3.3:48465151-48465170 | None:intergenic | 30.0% | |
| TTGAAGACAAATTGAAGATG+AGG | + | chr3.3:48462629-48462648 | None:intergenic | 30.0% | |
| TTGAATACAAGGAATCATTG+AGG | - | chr3.3:48465352-48465371 | MS.gene04185:CDS | 30.0% | |
| TTTATCCAGAGAACAAGAAA+GGG | - | chr3.3:48460428-48460447 | MS.gene04185:CDS | 30.0% | |
| ! | AATTGCTCATTTGAAACTAC+GGG | + | chr3.3:48462105-48462124 | None:intergenic | 30.0% |
| ! | ATGTGAACTTCTTAACTTGA+GGG | - | chr3.3:48464107-48464126 | MS.gene04185:CDS | 30.0% |
| ! | CATCATCTATTCACTTCTTT+TGG | - | chr3.3:48460824-48460843 | MS.gene04185:CDS | 30.0% |
| ! | CTTCAACTTTTACTTTCACT+TGG | + | chr3.3:48461802-48461821 | None:intergenic | 30.0% |
| ! | GAAACATTCCTACTCTTTTA+TGG | - | chr3.3:48464451-48464470 | MS.gene04185:CDS | 30.0% |
| ! | GAGAACATTGTTATTATCTG+GGG | - | chr3.3:48464991-48465010 | MS.gene04185:intron | 30.0% |
| ! | TTTGGTTTAGAATCTTGAGA+TGG | - | chr3.3:48461115-48461134 | MS.gene04185:CDS | 30.0% |
| !! | AAGTTGAAGTTGATGATTCA+AGG | - | chr3.3:48461813-48461832 | MS.gene04185:intron | 30.0% |
| !! | ATTGATTTGAGAAACTAGAG+GGG | + | chr3.3:48462067-48462086 | None:intergenic | 30.0% |
| !! | CAATTGATTTGAGAAACTAG+AGG | + | chr3.3:48462069-48462088 | None:intergenic | 30.0% |
| !!! | GTTGGTCATAACTGTTTTTT+AGG | - | chr3.3:48461460-48461479 | MS.gene04185:intron | 30.0% |
| !!! | TCTACATTGGCATTGATTTT+TGG | - | chr3.3:48461097-48461116 | MS.gene04185:CDS | 30.0% |
| !!! | TGGACTTTTTCATTCTTTCT+TGG | + | chr3.3:48461697-48461716 | None:intergenic | 30.0% |
| AAATGCAAACGAAGATGGTA+AGG | + | chr3.3:48462790-48462809 | None:intergenic | 35.0% | |
| AACAAGAAAGGGAAGCAATA+AGG | - | chr3.3:48460439-48460458 | MS.gene04185:CDS | 35.0% | |
| AAGATAGTTGAAACTTGGGA+TGG | - | chr3.3:48463781-48463800 | MS.gene04185:intron | 35.0% | |
| AAGTTAAGAAGTTCACATGG+CGG | + | chr3.3:48464105-48464124 | None:intergenic | 35.0% | |
| AATGCAAACGAAGATGGTAA+GGG | + | chr3.3:48462789-48462808 | None:intergenic | 35.0% | |
| AATGTGAACAATGAGGTTTC+TGG | - | chr3.3:48460964-48460983 | MS.gene04185:CDS | 35.0% | |
| AGCAAACAGAGTTTCTGATA+AGG | + | chr3.3:48465289-48465308 | None:intergenic | 35.0% | |
| CAAAATCTGAATTGAGGGTA+TGG | - | chr3.3:48463023-48463042 | MS.gene04185:intron | 35.0% | |
| CAAGCTATAACCTCAATAGA+CGG | - | chr3.3:48464950-48464969 | MS.gene04185:intron | 35.0% | |
| CATGAGCAATATCTGTATCA+TGG | + | chr3.3:48461556-48461575 | None:intergenic | 35.0% | |
| CCAAAAATTTGATCCCTAAC+TGG | + | chr3.3:48463442-48463461 | None:intergenic | 35.0% | |
| CCAGTAATGCAAAGGTTATA+TGG | - | chr3.3:48461983-48462002 | MS.gene04185:intron | 35.0% | |
| CCATATAACCTTTGCATTAC+TGG | + | chr3.3:48461986-48462005 | None:intergenic | 35.0% | |
| CTCAAGTTAAGAAGTTCACA+TGG | + | chr3.3:48464108-48464127 | None:intergenic | 35.0% | |
| CTTGTAGAAGGAGGTAAAAA+AGG | - | chr3.3:48461348-48461367 | MS.gene04185:intron | 35.0% | |
| CTTTAATCTCTTGTAGAAGG+AGG | - | chr3.3:48461339-48461358 | MS.gene04185:intron | 35.0% | |
| GAAAGCTTAGAGAGAAGTAA+TGG | - | chr3.3:48465168-48465187 | MS.gene04185:CDS | 35.0% | |
| GATCATCAACTACGAAGATA+AGG | - | chr3.3:48463393-48463412 | MS.gene04185:intron | 35.0% | |
| GCAAACAGAGTTTCTGATAA+GGG | + | chr3.3:48465288-48465307 | None:intergenic | 35.0% | |
| GGATGAACTAAACTTACTTC+TGG | - | chr3.3:48461020-48461039 | MS.gene04185:CDS | 35.0% | |
| GGGGCTATGAAATCAAAAAA+GGG | + | chr3.3:48462146-48462165 | None:intergenic | 35.0% | |
| GGTTATTACAGGAGCAAAAT+CGG | - | chr3.3:48460598-48460617 | MS.gene04185:CDS | 35.0% | |
| GTACAAGGAATGCGAAAAAT+AGG | + | chr3.3:48462847-48462866 | None:intergenic | 35.0% | |
| GTTCAACCTATACTACACAT+GGG | + | chr3.3:48461242-48461261 | None:intergenic | 35.0% | |
| TAACAACAACGTGTACTGTT+GGG | + | chr3.3:48462704-48462723 | None:intergenic | 35.0% | |
| TACGAATTAGAGGAGAAACA+CGG | - | chr3.3:48462401-48462420 | MS.gene04185:intron | 35.0% | |
| TAGAAAGGGGATAAACTAGA+GGG | - | chr3.3:48463049-48463068 | MS.gene04185:intron | 35.0% | |
| TATGAATAGCTGTCAAGTGA+CGG | + | chr3.3:48463661-48463680 | None:intergenic | 35.0% | |
| TCAACTTCTGTTCTGATGAA+AGG | + | chr3.3:48461438-48461457 | None:intergenic | 35.0% | |
| TCAGGTGTAAAATTCAGAGA+GGG | - | chr3.3:48463494-48463513 | MS.gene04185:intron | 35.0% | |
| TCCTAAATCACTGCATAACT+GGG | + | chr3.3:48464788-48464807 | None:intergenic | 35.0% | |
| TCTCAAAAAACCACTGTTGT+CGG | + | chr3.3:48464433-48464452 | None:intergenic | 35.0% | |
| TGAAATGTCCTATCGAAGAT+GGG | + | chr3.3:48463866-48463885 | None:intergenic | 35.0% | |
| TGTTCAACCTATACTACACA+TGG | + | chr3.3:48461243-48461262 | None:intergenic | 35.0% | |
| TTAACAACAACGTGTACTGT+TGG | + | chr3.3:48462705-48462724 | None:intergenic | 35.0% | |
| TTAGAAAGGGGATAAACTAG+AGG | - | chr3.3:48463048-48463067 | MS.gene04185:intron | 35.0% | |
| TTAGAATCTTGAGATGGCTA+AGG | - | chr3.3:48461121-48461140 | MS.gene04185:intron | 35.0% | |
| TTGAAATGTCCTATCGAAGA+TGG | + | chr3.3:48463867-48463886 | None:intergenic | 35.0% | |
| ! | AACACATCTTTGAAGATGCA+GGG | - | chr3.3:48464334-48464353 | MS.gene04185:intron | 35.0% |
| ! | ACTTTTACTTTCACTTGGGA+TGG | + | chr3.3:48461797-48461816 | None:intergenic | 35.0% |
| ! | ATTGCTCATTTGAAACTACG+GGG | + | chr3.3:48462104-48462123 | None:intergenic | 35.0% |
| ! | ATTTTCGTGTCAACAATGTG+TGG | + | chr3.3:48461650-48461669 | None:intergenic | 35.0% |
| ! | CAGCTTTATATAGAAGCTGA+AGG | - | chr3.3:48463591-48463610 | MS.gene04185:intron | 35.0% |
| ! | CATGTACTAAGGTTTTACAC+TGG | - | chr3.3:48460869-48460888 | MS.gene04185:CDS | 35.0% |
| ! | CATGTGAACTTCTTAACTTG+AGG | - | chr3.3:48464106-48464125 | MS.gene04185:CDS | 35.0% |
| ! | CCAGTTAGGGATCAAATTTT+TGG | - | chr3.3:48463439-48463458 | MS.gene04185:intron | 35.0% |
| ! | CGTAATTTGCATATAGCTTG+AGG | - | chr3.3:48464537-48464556 | MS.gene04185:intron | 35.0% |
| ! | TGAGGGTATGGAATTAGAAA+GGG | - | chr3.3:48463035-48463054 | MS.gene04185:intron | 35.0% |
| ! | TTCCGACTTTCTTTTGTTGA+AGG | - | chr3.3:48465146-48465165 | MS.gene04185:CDS | 35.0% |
| ! | TTGAGGGTATGGAATTAGAA+AGG | - | chr3.3:48463034-48463053 | MS.gene04185:intron | 35.0% |
| ! | TTTGATATGTGGCTCTACAT+TGG | - | chr3.3:48461084-48461103 | MS.gene04185:CDS | 35.0% |
| !! | ACACATGTCAGTTTTGTAAC+AGG | + | chr3.3:48463638-48463657 | None:intergenic | 35.0% |
| !! | AGTTTTGTACCTATGTCTGA+CGG | - | chr3.3:48463986-48464005 | MS.gene04185:intron | 35.0% |
| !! | ATGGGCTATTTTGGATAACA+TGG | + | chr3.3:48463848-48463867 | None:intergenic | 35.0% |
| !! | CTATTTTGGATAACATGGTG+TGG | + | chr3.3:48463843-48463862 | None:intergenic | 35.0% |
| !! | CTTTTCGAGATCCTTGAATT+TGG | + | chr3.3:48460629-48460648 | None:intergenic | 35.0% |
| !! | GACGAAGACAAAGGTATTAA+CGG | - | chr3.3:48462467-48462486 | MS.gene04185:intron | 35.0% |
| !! | TCAGAACAGAAGTTGATAGT+TGG | - | chr3.3:48461442-48461461 | MS.gene04185:intron | 35.0% |
| !! | TCAGCTTAAGTTGATTCAGT+TGG | - | chr3.3:48460722-48460741 | MS.gene04185:CDS | 35.0% |
| !!! | AACAAACTTTTCTGGAGTCT+CGG | + | chr3.3:48461606-48461625 | None:intergenic | 35.0% |
| AAAATGTCGATGAACGATGG+AGG | + | chr3.3:48462658-48462677 | None:intergenic | 40.0% | |
| AAGAGGCAGCTAAGATAACA+CGG | + | chr3.3:48464652-48464671 | None:intergenic | 40.0% | |
| AATCAACTTAAGCTGACGTG+AGG | + | chr3.3:48460718-48460737 | None:intergenic | 40.0% | |
| AATCGGTCAGACCAAATTCA+AGG | - | chr3.3:48460615-48460634 | MS.gene04185:CDS | 40.0% | |
| AATGTGTTAAAGCTGGCAGT+TGG | + | chr3.3:48463362-48463381 | None:intergenic | 40.0% | |
| ACGGAAGAATGTGTTAAAGC+TGG | + | chr3.3:48463369-48463388 | None:intergenic | 40.0% | |
| AGAAAGGGGATAAACTAGAG+GGG | - | chr3.3:48463050-48463069 | MS.gene04185:intron | 40.0% | |
| AGTTAAGAAGTTCACATGGC+GGG | + | chr3.3:48464104-48464123 | None:intergenic | 40.0% | |
| ATCTTACCCCAGTAATGCAA+AGG | - | chr3.3:48461975-48461994 | MS.gene04185:intron | 40.0% | |
| ATGGAGAATACGACAGTTGA+TGG | - | chr3.3:48462541-48462560 | MS.gene04185:intron | 40.0% | |
| ATGTGTTAAAGCTGGCAGTT+GGG | + | chr3.3:48463361-48463380 | None:intergenic | 40.0% | |
| CAAAATAGCCCATCTTCGAT+AGG | - | chr3.3:48463855-48463874 | MS.gene04185:intron | 40.0% | |
| CAGCTAAGATAACACGGAAA+CGG | + | chr3.3:48464646-48464665 | None:intergenic | 40.0% | |
| CGTCTATTGAGGTTATAGCT+TGG | + | chr3.3:48464952-48464971 | None:intergenic | 40.0% | |
| CTCAAAAAACCACTGTTGTC+GGG | + | chr3.3:48464432-48464451 | None:intergenic | 40.0% | |
| CTCAGGTGTAAAATTCAGAG+AGG | - | chr3.3:48463493-48463512 | MS.gene04185:intron | 40.0% | |
| CTCCTAAATCACTGCATAAC+TGG | + | chr3.3:48464789-48464808 | None:intergenic | 40.0% | |
| CTTGGGATGGTTGTAGAAAT+TGG | - | chr3.3:48463794-48463813 | MS.gene04185:intron | 40.0% | |
| GACAAATCAGAGGAGAAACA+TGG | - | chr3.3:48462428-48462447 | MS.gene04185:intron | 40.0% | |
| GACCCATGTTTCGTTTCAAT+TGG | - | chr3.3:48462218-48462237 | MS.gene04185:intron | 40.0% | |
| GACGAAAATGCAAACGAAGA+TGG | + | chr3.3:48462795-48462814 | None:intergenic | 40.0% | |
| GAGAAGTAATGGTCCAATCT+CGG | - | chr3.3:48465179-48465198 | MS.gene04185:CDS | 40.0% | |
| GAGTTTCTCTCTTAAGTGGA+TGG | + | chr3.3:48463247-48463266 | None:intergenic | 40.0% | |
| GGATATGATGCTTTCATGAC+TGG | - | chr3.3:48464751-48464770 | MS.gene04185:intron | 40.0% | |
| GGCCAATTGAAACGAAACAT+GGG | + | chr3.3:48462223-48462242 | None:intergenic | 40.0% | |
| GGGGGCTATGAAATCAAAAA+AGG | + | chr3.3:48462147-48462166 | None:intergenic | 40.0% | |
| GTCTGAACACTCACTATCAT+GGG | + | chr3.3:48460478-48460497 | None:intergenic | 40.0% | |
| GTTGGAGTTTCTCTCTTAAG+TGG | + | chr3.3:48463251-48463270 | None:intergenic | 40.0% | |
| TAACAATACACAGAGTCACC+AGG | - | chr3.3:48463301-48463320 | MS.gene04185:intron | 40.0% | |
| TAAGATAACACGGAAACGGA+AGG | + | chr3.3:48464642-48464661 | None:intergenic | 40.0% | |
| TCTTAAAAGCCGTCAGACAT+AGG | + | chr3.3:48463998-48464017 | None:intergenic | 40.0% | |
| TGACAACCATTGTGTCGAAT+GGG | + | chr3.3:48463930-48463949 | None:intergenic | 40.0% | |
| TGATGTTACAGCACCGTATT+GGG | - | chr3.3:48461301-48461320 | MS.gene04185:intron | 40.0% | |
| TGGCCAATTGAAACGAAACA+TGG | + | chr3.3:48462224-48462243 | None:intergenic | 40.0% | |
| TGTAGTTTCTGTCTACCACT+TGG | - | chr3.3:48465080-48465099 | MS.gene04185:intron | 40.0% | |
| TGTCTGAACACTCACTATCA+TGG | + | chr3.3:48460479-48460498 | None:intergenic | 40.0% | |
| TTCGTTTCAATTGGCCAAAG+TGG | - | chr3.3:48462227-48462246 | MS.gene04185:intron | 40.0% | |
| TTGATGTTACAGCACCGTAT+TGG | - | chr3.3:48461300-48461319 | MS.gene04185:intron | 40.0% | |
| TTGGTTTAGTCGTGCCAAAT+TGG | + | chr3.3:48463329-48463348 | None:intergenic | 40.0% | |
| TTTGTTGGTACCGTCTATTG+AGG | + | chr3.3:48464963-48464982 | None:intergenic | 40.0% | |
| ! | AAACACGGCTTGCTTCAAAA+TGG | - | chr3.3:48464054-48464073 | MS.gene04185:CDS | 40.0% |
| ! | AACTTCTTAACTTGAGGGAG+GGG | - | chr3.3:48464112-48464131 | MS.gene04185:CDS | 40.0% |
| ! | ACAGAGGCAACAAACTTTTC+TGG | + | chr3.3:48461614-48461633 | None:intergenic | 40.0% |
| ! | AGAAACTCTGTTTGCTGATC+AGG | - | chr3.3:48465293-48465312 | MS.gene04185:CDS | 40.0% |
| ! | CAGAGGCTTAATTGCACTTT+TGG | + | chr3.3:48463135-48463154 | None:intergenic | 40.0% |
| ! | GAACACATCTTTGAAGATGC+AGG | - | chr3.3:48464333-48464352 | MS.gene04185:intron | 40.0% |
| ! | GAACTTCTTAACTTGAGGGA+GGG | - | chr3.3:48464111-48464130 | MS.gene04185:CDS | 40.0% |
| ! | GAGGGTATGGAATTAGAAAG+GGG | - | chr3.3:48463036-48463055 | MS.gene04185:intron | 40.0% |
| ! | TGAACTTCTTAACTTGAGGG+AGG | - | chr3.3:48464110-48464129 | MS.gene04185:CDS | 40.0% |
| ! | TGTCGCATCTGTTGTTTATG+CGG | + | chr3.3:48463963-48463982 | None:intergenic | 40.0% |
| ! | TTGCTCATTTGAAACTACGG+GGG | + | chr3.3:48462103-48462122 | None:intergenic | 40.0% |
| ! | TTTTGTCCACAAATTGCTGC+TGG | - | chr3.3:48461746-48461765 | MS.gene04185:intron | 40.0% |
| !! | AATGGGCTTCCAGTTTTTAG+GGG | + | chr3.3:48463913-48463932 | None:intergenic | 40.0% |
| !! | ATCTTCGTAGTTGATGATCG+TGG | + | chr3.3:48463392-48463411 | None:intergenic | 40.0% |
| !! | ATGTCTGACGGCTTTTAAGA+AGG | - | chr3.3:48463998-48464017 | MS.gene04185:intron | 40.0% |
| !! | GAATGGGCTTCCAGTTTTTA+GGG | + | chr3.3:48463914-48463933 | None:intergenic | 40.0% |
| !! | GGCGATGACAAAGGTATTAA+CGG | - | chr3.3:48462488-48462507 | MS.gene04185:intron | 40.0% |
| !! | TGGAAAGCACTTGTTAACAG+AGG | + | chr3.3:48461630-48461649 | None:intergenic | 40.0% |
| !!! | ACAAACTTTTCTGGAGTCTC+GGG | + | chr3.3:48461605-48461624 | None:intergenic | 40.0% |
| !!! | CTATCGAAGATGGGCTATTT+TGG | + | chr3.3:48463857-48463876 | None:intergenic | 40.0% |
| !!! | TTTTGACTTCAAGTGTGCTC+AGG | - | chr3.3:48463476-48463495 | MS.gene04185:intron | 40.0% |
| AAAGGATGGTTACCGAACAC+GGG | - | chr3.3:48464230-48464249 | MS.gene04185:CDS | 45.0% | |
| AAGTTCAGTGAATGGCGTGA+TGG | - | chr3.3:48460576-48460595 | MS.gene04185:CDS | 45.0% | |
| AATCCATCAAGCTTGAGAGC+TGG | + | chr3.3:48460693-48460712 | None:intergenic | 45.0% | |
| ACAGGTTAACCTGCTATAGC+AGG | + | chr3.3:48463620-48463639 | None:intergenic | 45.0% | |
| AGGCATCCCATGTGTAGTAT+AGG | - | chr3.3:48461233-48461252 | MS.gene04185:intron | 45.0% | |
| AGTTCAGTGAATGGCGTGAT+GGG | - | chr3.3:48460577-48460596 | MS.gene04185:CDS | 45.0% | |
| AGTTGTGTATACAGACTCGG+AGG | - | chr3.3:48460999-48461018 | MS.gene04185:CDS | 45.0% | |
| ATGAAGATCCAAGCTGCAGT+TGG | - | chr3.3:48461391-48461410 | MS.gene04185:intron | 45.0% | |
| ATGTCTGCCATGTTGACAGA+AGG | + | chr3.3:48460531-48460550 | None:intergenic | 45.0% | |
| CGTTGAATCTCAGACTCGAA+CGG | + | chr3.3:48464024-48464043 | None:intergenic | 45.0% | |
| GAAAGGATGGTTACCGAACA+CGG | - | chr3.3:48464229-48464248 | MS.gene04185:CDS | 45.0% | |
| GAGGAAAACGAATACGACGA+CGG | + | chr3.3:48462767-48462786 | None:intergenic | 45.0% | |
| GCAATTTCCCCCCTAAAAAC+TGG | - | chr3.3:48463901-48463920 | MS.gene04185:intron | 45.0% | |
| GCCCAGTTATGCAGTGATTT+AGG | - | chr3.3:48464784-48464803 | MS.gene04185:intron | 45.0% | |
| GGAAAATTTCCCGACAACAG+TGG | - | chr3.3:48464420-48464439 | MS.gene04185:CDS | 45.0% | |
| GGACATACCTTCTGTCAACA+TGG | - | chr3.3:48460521-48460540 | MS.gene04185:CDS | 45.0% | |
| GGGATTTCCTTCTAACCTGA+AGG | - | chr3.3:48465011-48465030 | MS.gene04185:intron | 45.0% | |
| GGTATTAACGGCGATGACAA+AGG | - | chr3.3:48462479-48462498 | MS.gene04185:intron | 45.0% | |
| GTGACAACCATTGTGTCGAA+TGG | + | chr3.3:48463931-48463950 | None:intergenic | 45.0% | |
| GTGTTTCAGCTATGTACAGC+TGG | + | chr3.3:48463695-48463714 | None:intergenic | 45.0% | |
| GTTAAGAAGTTCACATGGCG+GGG | + | chr3.3:48464103-48464122 | None:intergenic | 45.0% | |
| TGAAGGTTACCTGCTATAGC+AGG | - | chr3.3:48463608-48463627 | MS.gene04185:intron | 45.0% | |
| TGCTTCCCTTTCTTGTTCTC+TGG | + | chr3.3:48460436-48460455 | None:intergenic | 45.0% | |
| TGTTACTCGTGAGTCATGAC+TGG | + | chr3.3:48463286-48463305 | None:intergenic | 45.0% | |
| TTGGATAACATGGTGTGGAC+AGG | + | chr3.3:48463838-48463857 | None:intergenic | 45.0% | |
| TTGGGATGGTGTAACTAGCT+CGG | + | chr3.3:48461783-48461802 | None:intergenic | 45.0% | |
| ! | AAGGTATTAACGGCGATGGA+AGG | - | chr3.3:48462498-48462517 | MS.gene04185:intron | 45.0% |
| ! | ACGGCTTGCTTCAAAATGGA+GGG | - | chr3.3:48464058-48464077 | MS.gene04185:CDS | 45.0% |
| ! | ACTTCTTAACTTGAGGGAGG+GGG | - | chr3.3:48464113-48464132 | MS.gene04185:CDS | 45.0% |
| ! | CCTTCCAAAAGTTTTCCCAG+CGG | + | chr3.3:48465213-48465232 | None:intergenic | 45.0% |
| ! | CGTTCGAGTCTGAGATTCAA+CGG | - | chr3.3:48464022-48464041 | MS.gene04185:CDS | 45.0% |
| ! | GTCGCATCTGTTGTTTATGC+GGG | + | chr3.3:48463962-48463981 | None:intergenic | 45.0% |
| ! | GTCTGAGATTCAACGGTTGA+CGG | - | chr3.3:48464029-48464048 | MS.gene04185:CDS | 45.0% |
| ! | TACCTTTGTCTTCGTCGACT+TGG | + | chr3.3:48462463-48462482 | None:intergenic | 45.0% |
| ! | TCACTTGCCTTCAGGTTAGA+AGG | + | chr3.3:48465021-48465040 | None:intergenic | 45.0% |
| ! | TCTGAGATTCAACGGTTGAC+GGG | - | chr3.3:48464030-48464049 | MS.gene04185:CDS | 45.0% |
| ! | TCTGTTTGCTGATCAGGCAA+AGG | - | chr3.3:48465299-48465318 | MS.gene04185:CDS | 45.0% |
| ! | TCTTTGAAGATGCAGGGAAC+TGG | - | chr3.3:48464340-48464359 | MS.gene04185:intron | 45.0% |
| ! | TGCAGAGGCAAGTGATTTTC+TGG | + | chr3.3:48461717-48461736 | None:intergenic | 45.0% |
| !! | AATTGGTGTCAGCACCAAAG+TGG | - | chr3.3:48463811-48463830 | MS.gene04185:intron | 45.0% |
| !! | ATACGACAGTTGATGGAGGA+AGG | - | chr3.3:48462548-48462567 | MS.gene04185:intron | 45.0% |
| !! | ATGGCGTGATGGGTTATTAC+AGG | - | chr3.3:48460587-48460606 | MS.gene04185:CDS | 45.0% |
| !! | ATGGGCTTCCAGTTTTTAGG+GGG | + | chr3.3:48463912-48463931 | None:intergenic | 45.0% |
| !! | CGAATGGGCTTCCAGTTTTT+AGG | + | chr3.3:48463915-48463934 | None:intergenic | 45.0% |
| !! | CTGGGAAAACTTTTGGAAGG+TGG | - | chr3.3:48465213-48465232 | MS.gene04185:CDS | 45.0% |
| !! | GACAAAGGTATTAACGGCGA+TGG | - | chr3.3:48462473-48462492 | MS.gene04185:intron | 45.0% |
| !! | GAGAATACGACAGTTGATGG+AGG | - | chr3.3:48462544-48462563 | MS.gene04185:intron | 45.0% |
| !! | TCGTAGTTGATGATCGTGGA+CGG | + | chr3.3:48463388-48463407 | None:intergenic | 45.0% |
| !!! | GGCAGTTGGGTTTTAGATGT+TGG | + | chr3.3:48463348-48463367 | None:intergenic | 45.0% |
| !!! | TGTAACTAGCTCGGTGCTTT+TGG | + | chr3.3:48461774-48461793 | None:intergenic | 45.0% |
| AAGAGGGGTCATGGGAAGAT+GGG | - | chr3.3:48464268-48464287 | MS.gene04185:intron | 50.0% | |
| ACACGGAGACGACAAATCAG+AGG | - | chr3.3:48462418-48462437 | MS.gene04185:intron | 50.0% | |
| ACACTGCTGTTGCATCCAAG+TGG | + | chr3.3:48465098-48465117 | None:intergenic | 50.0% | |
| AGAGTCACCAGGAGCCAATT+TGG | - | chr3.3:48463312-48463331 | MS.gene04185:intron | 50.0% | |
| AGCGGATGCAAAACCGAGAT+TGG | + | chr3.3:48465195-48465214 | None:intergenic | 50.0% | |
| AGGGGGATGATGTGCATATG+CGG | - | chr3.3:48464199-48464218 | MS.gene04185:CDS | 50.0% | |
| ATGCGGCGTTTGTGAAAGGA+TGG | - | chr3.3:48464216-48464235 | MS.gene04185:CDS | 50.0% | |
| CAAAGGCAGTTGGCATGAAG+TGG | - | chr3.3:48465316-48465335 | MS.gene04185:CDS | 50.0% | |
| CAACGGTTGACGGGAAAACA+CGG | - | chr3.3:48464039-48464058 | MS.gene04185:CDS | 50.0% | |
| CATCCAGCTCTCAAGCTTGA+TGG | - | chr3.3:48460687-48460706 | MS.gene04185:CDS | 50.0% | |
| CTCGTACTTCACTTGCCTTC+AGG | + | chr3.3:48465029-48465048 | None:intergenic | 50.0% | |
| GACCAAGTCGACGAAGACAA+AGG | - | chr3.3:48462458-48462477 | MS.gene04185:intron | 50.0% | |
| GATAGGGAGGGAAAGTCACA+GGG | - | chr3.3:48462572-48462591 | MS.gene04185:intron | 50.0% | |
| GCAAACGAAGATGGTAAGGG+AGG | + | chr3.3:48462786-48462805 | None:intergenic | 50.0% | |
| GCAAAGATGTTCACTGCGAC+AGG | + | chr3.3:48462730-48462749 | None:intergenic | 50.0% | |
| GCATATGCGGCGTTTGTGAA+AGG | - | chr3.3:48464212-48464231 | MS.gene04185:CDS | 50.0% | |
| GTATTTGCAGATCGTCCAGC+TGG | - | chr3.3:48464704-48464723 | MS.gene04185:intron | 50.0% | |
| GTCGCAGTGAACATCTTTGC+CGG | - | chr3.3:48462730-48462749 | MS.gene04185:intron | 50.0% | |
| GTGAAGTAGACCGTGGAAGA+GGG | - | chr3.3:48464252-48464271 | MS.gene04185:CDS | 50.0% | |
| TGAAGTAGACCGTGGAAGAG+GGG | - | chr3.3:48464253-48464272 | MS.gene04185:CDS | 50.0% | |
| TGGAAGCCCATTCGACACAA+TGG | - | chr3.3:48463921-48463940 | MS.gene04185:intron | 50.0% | |
| TGTCAAGCTGGAGACCATAG+CGG | - | chr3.3:48464159-48464178 | MS.gene04185:CDS | 50.0% | |
| TTGGAGCCAGCAGCAATTTG+TGG | + | chr3.3:48461755-48461774 | None:intergenic | 50.0% | |
| ! | AAGGTGAGTTGAGGTCGACA+GGG | - | chr3.3:48462517-48462536 | MS.gene04185:intron | 50.0% |
| ! | AATCTCGGTTTTGCATCCGC+TGG | - | chr3.3:48465194-48465213 | MS.gene04185:CDS | 50.0% |
| ! | AGTCATGACTGGTTAGGCTC+TGG | + | chr3.3:48463275-48463294 | None:intergenic | 50.0% |
| ! | ATCTCGGTTTTGCATCCGCT+GGG | - | chr3.3:48465195-48465214 | MS.gene04185:CDS | 50.0% |
| ! | CACGGCTTGCTTCAAAATGG+AGG | - | chr3.3:48464057-48464076 | MS.gene04185:CDS | 50.0% |
| ! | CCGCTGGGAAAACTTTTGGA+AGG | - | chr3.3:48465210-48465229 | MS.gene04185:CDS | 50.0% |
| ! | CGGCTTGCTTCAAAATGGAG+GGG | - | chr3.3:48464059-48464078 | MS.gene04185:CDS | 50.0% |
| ! | CTCGTGAGTCATGACTGGTT+AGG | + | chr3.3:48463281-48463300 | None:intergenic | 50.0% |
| ! | GCATCCGCTGGGAAAACTTT+TGG | - | chr3.3:48465206-48465225 | MS.gene04185:CDS | 50.0% |
| ! | GGCTTGCTTCAAAATGGAGG+GGG | - | chr3.3:48464060-48464079 | MS.gene04185:CDS | 50.0% |
| ! | GTTGATGGAGGAAGGCGATA+GGG | - | chr3.3:48462556-48462575 | MS.gene04185:intron | 50.0% |
| ! | TGGTTTTCTCCCCCATCAGT+GGG | + | chr3.3:48464387-48464406 | None:intergenic | 50.0% |
| ! | TTAACTTGAGGGAGGGGGTA+GGG | - | chr3.3:48464118-48464137 | MS.gene04185:CDS | 50.0% |
| !! | AGTTGATGGAGGAAGGCGAT+AGG | - | chr3.3:48462555-48462574 | MS.gene04185:intron | 50.0% |
| !! | ATGGGAAGATGGGTTGATGG+AGG | - | chr3.3:48464278-48464297 | MS.gene04185:intron | 50.0% |
| !! | GTCATGGGAAGATGGGTTGA+TGG | - | chr3.3:48464275-48464294 | MS.gene04185:intron | 50.0% |
| !! | TGGGCTTCCAGTTTTTAGGG+GGG | + | chr3.3:48463911-48463930 | None:intergenic | 50.0% |
| !!! | TTTTCTGGAGTCTCGGGAAG+AGG | + | chr3.3:48461599-48461618 | None:intergenic | 50.0% |
| AACACGGGTGAAGTAGACCG+TGG | - | chr3.3:48464245-48464264 | MS.gene04185:CDS | 55.0% | |
| AATCTCGCTCCCATCCGCTA+TGG | + | chr3.3:48464176-48464195 | None:intergenic | 55.0% | |
| ACGCTACCATTTCACCACCG+TGG | + | chr3.3:48464313-48464332 | None:intergenic | 55.0% | |
| AGATCGTCCAGCTGGAATCC+TGG | - | chr3.3:48464712-48464731 | MS.gene04185:intron | 55.0% | |
| ATGGAGGAAGGCGATAGGGA+GGG | - | chr3.3:48462560-48462579 | MS.gene04185:intron | 55.0% | |
| CGATAGGGAGGGAAAGTCAC+AGG | - | chr3.3:48462571-48462590 | MS.gene04185:intron | 55.0% | |
| CGGTCTACTTCACCCGTGTT+CGG | + | chr3.3:48464245-48464264 | None:intergenic | 55.0% | |
| GAAGAGGGGTCATGGGAAGA+TGG | - | chr3.3:48464267-48464286 | MS.gene04185:intron | 55.0% | |
| GAAGATGCAGGGAACTGGAG+AGG | - | chr3.3:48464345-48464364 | MS.gene04185:intron | 55.0% | |
| GAATCCTGGAGGCAAGCATG+AGG | - | chr3.3:48464726-48464745 | MS.gene04185:intron | 55.0% | |
| GACGACGGCACATACAAAGC+CGG | + | chr3.3:48462752-48462771 | None:intergenic | 55.0% | |
| GCTGATCAGGCAAAGGCAGT+TGG | - | chr3.3:48465306-48465325 | MS.gene04185:CDS | 55.0% | |
| GGCGAAATCCAACTGCAGCT+TGG | + | chr3.3:48461402-48461421 | None:intergenic | 55.0% | |
| GGTGAAGTAGACCGTGGAAG+AGG | - | chr3.3:48464251-48464270 | MS.gene04185:CDS | 55.0% | |
| TAACTTGAGGGAGGGGGTAG+GGG | - | chr3.3:48464119-48464138 | MS.gene04185:CDS | 55.0% | |
| TGGTGTGGACAGGACCACTT+TGG | + | chr3.3:48463828-48463847 | None:intergenic | 55.0% | |
| TTCCCATGACCCCTCTTCCA+CGG | + | chr3.3:48464265-48464284 | None:intergenic | 55.0% | |
| ! | AAGCTGGAGACCATAGCGGA+TGG | - | chr3.3:48464163-48464182 | MS.gene04185:CDS | 55.0% |
| ! | AGTCGTGCCAAATTGGCTCC+TGG | + | chr3.3:48463322-48463341 | None:intergenic | 55.0% |
| ! | CTTAACTTGAGGGAGGGGGT+AGG | - | chr3.3:48464117-48464136 | MS.gene04185:CDS | 55.0% |
| ! | GAAGGTGAGTTGAGGTCGAC+AGG | - | chr3.3:48462516-48462535 | MS.gene04185:intron | 55.0% |
| ! | GACTGGTTAGGCTCTGGTGT+TGG | + | chr3.3:48463269-48463288 | None:intergenic | 55.0% |
| ! | GAGGTACCACGGTGGTGAAA+TGG | - | chr3.3:48464304-48464323 | MS.gene04185:intron | 55.0% |
| ! | GATGGAGGAGTGAGGTACCA+CGG | - | chr3.3:48464293-48464312 | MS.gene04185:intron | 55.0% |
| ! | GTGGTTTTCTCCCCCATCAG+TGG | + | chr3.3:48464388-48464407 | None:intergenic | 55.0% |
| ! | GTTCACATGGCGGGGACATA+TGG | + | chr3.3:48464095-48464114 | None:intergenic | 55.0% |
| !! | AGCTGGAGACCATAGCGGAT+GGG | - | chr3.3:48464164-48464183 | MS.gene04185:CDS | 55.0% |
| !! | GATGGGTTGATGGAGGAGTG+AGG | - | chr3.3:48464285-48464304 | MS.gene04185:intron | 55.0% |
| AGACCGTGGAAGAGGGGTCA+TGG | - | chr3.3:48464259-48464278 | MS.gene04185:CDS | 60.0% | |
| ATGGGAGCGAGATTGCGAGG+GGG | - | chr3.3:48464182-48464201 | MS.gene04185:CDS | 60.0% | |
| CGGCGATGGAAGGTGAGTTG+AGG | - | chr3.3:48462508-48462527 | MS.gene04185:intron | 60.0% | |
| CTTGCCTCCAGGATTCCAGC+TGG | + | chr3.3:48464722-48464741 | None:intergenic | 60.0% | |
| GACCGTGGAAGAGGGGTCAT+GGG | - | chr3.3:48464260-48464279 | MS.gene04185:CDS | 60.0% | |
| GAGTTGAGGTCGACAGGGCA+TGG | - | chr3.3:48462522-48462541 | MS.gene04185:intron | 60.0% | |
| GATGGAGGAAGGCGATAGGG+AGG | - | chr3.3:48462559-48462578 | MS.gene04185:intron | 60.0% | |
| GATGGGAGCGAGATTGCGAG+GGG | - | chr3.3:48464181-48464200 | MS.gene04185:CDS | 60.0% | |
| GCTTGACAGAGCTCCCCAAC+CGG | + | chr3.3:48464147-48464166 | None:intergenic | 60.0% | |
| GGATGGGAGCGAGATTGCGA+GGG | - | chr3.3:48464180-48464199 | MS.gene04185:CDS | 60.0% | |
| GTTGGGGAGCTCTGTCAAGC+TGG | - | chr3.3:48464147-48464166 | MS.gene04185:CDS | 60.0% | |
| TCGTCCAGCTGGAATCCTGG+AGG | - | chr3.3:48464715-48464734 | MS.gene04185:intron | 60.0% | |
| AGCAGCCTCGCTCCCACTGA+TGG | - | chr3.3:48464372-48464391 | MS.gene04185:CDS | 65.0% | |
| AGCCTCGCTCCCACTGATGG+GGG | - | chr3.3:48464375-48464394 | MS.gene04185:CDS | 65.0% | |
| ATCAGTGGGAGCGAGGCTGC+TGG | + | chr3.3:48464373-48464392 | None:intergenic | 65.0% | |
| CAGCCTCGCTCCCACTGATG+GGG | - | chr3.3:48464374-48464393 | MS.gene04185:CDS | 65.0% | |
| CCTGCCTCATGCTTGCCTCC+AGG | + | chr3.3:48464733-48464752 | None:intergenic | 65.0% | |
| CCTGGAGGCAAGCATGAGGC+AGG | - | chr3.3:48464730-48464749 | MS.gene04185:intron | 65.0% | |
| CGGATGGGAGCGAGATTGCG+AGG | - | chr3.3:48464179-48464198 | MS.gene04185:CDS | 65.0% | |
| GCAGCCTCGCTCCCACTGAT+GGG | - | chr3.3:48464373-48464392 | MS.gene04185:CDS | 65.0% | |
| ! | GGAGGAGTGAGGTACCACGG+TGG | - | chr3.3:48464296-48464315 | MS.gene04185:intron | 65.0% |
| AGGGGGTAGGGGCTCCGGTT+GGG | - | chr3.3:48464130-48464149 | MS.gene04185:CDS | 70.0% | |
| CTCCCCCATCAGTGGGAGCG+AGG | + | chr3.3:48464380-48464399 | None:intergenic | 70.0% | |
| GAGGGAGGGGGTAGGGGCTC+CGG | - | chr3.3:48464125-48464144 | MS.gene04185:CDS | 75.0% | |
| GAGGGGGTAGGGGCTCCGGT+TGG | - | chr3.3:48464129-48464148 | MS.gene04185:CDS | 75.0% | |
| GGGGGTAGGGGCTCCGGTTG+GGG | - | chr3.3:48464131-48464150 | MS.gene04185:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 48460411 | 48465437 | 48460411 | ID=MS.gene04185 |
| chr3.3 | mRNA | 48460411 | 48465437 | 48460411 | ID=MS.gene04185.t1;Parent=MS.gene04185 |
| chr3.3 | exon | 48465105 | 48465437 | 48465105 | ID=MS.gene04185.t1.exon1;Parent=MS.gene04185.t1 |
| chr3.3 | CDS | 48465105 | 48465437 | 48465105 | ID=cds.MS.gene04185.t1;Parent=MS.gene04185.t1 |
| chr3.3 | exon | 48464807 | 48464920 | 48464807 | ID=MS.gene04185.t1.exon2;Parent=MS.gene04185.t1 |
| chr3.3 | CDS | 48464807 | 48464920 | 48464807 | ID=cds.MS.gene04185.t1;Parent=MS.gene04185.t1 |
| chr3.3 | exon | 48464367 | 48464493 | 48464367 | ID=MS.gene04185.t1.exon3;Parent=MS.gene04185.t1 |
| chr3.3 | CDS | 48464367 | 48464493 | 48464367 | ID=cds.MS.gene04185.t1;Parent=MS.gene04185.t1 |
| chr3.3 | exon | 48464014 | 48464284 | 48464014 | ID=MS.gene04185.t1.exon4;Parent=MS.gene04185.t1 |
| chr3.3 | CDS | 48464014 | 48464284 | 48464014 | ID=cds.MS.gene04185.t1;Parent=MS.gene04185.t1 |
| chr3.3 | exon | 48460411 | 48461134 | 48460411 | ID=MS.gene04185.t1.exon5;Parent=MS.gene04185.t1 |
| chr3.3 | CDS | 48460411 | 48461134 | 48460411 | ID=cds.MS.gene04185.t1;Parent=MS.gene04185.t1 |
| Gene Sequence |
| Protein sequence |
