Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene024734.t1 | XP_003610912.2 | 93.3 | 788 | 45 | 1 | 1 | 788 | 1 | 780 | 2.90E-216 | 761.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene024734.t1 | Q3U0V1 | 33.0 | 191 | 116 | 6 | 194 | 384 | 147 | 325 | 3.1e-17 | 92.0 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene024734.t1 | G7K7W5 | 93.3 | 788 | 45 | 1 | 1 | 788 | 1 | 780 | 2.1e-216 | 761.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene04185 | MS.gene024734 | PPI |
MS.gene024674 | MS.gene024734 | PPI |
MS.gene072735 | MS.gene024734 | PPI |
MS.gene05659 | MS.gene024734 | PPI |
MS.gene85900 | MS.gene024734 | PPI |
MS.gene78555 | MS.gene024734 | PPI |
MS.gene55323 | MS.gene024734 | PPI |
MS.gene21656 | MS.gene024734 | PPI |
MS.gene024734 | MS.gene22316 | PPI |
MS.gene04307 | MS.gene024734 | PPI |
MS.gene024734 | MS.gene53118 | PPI |
MS.gene94960 | MS.gene024734 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene024734.t1 | MTR_5g008420 | 96.320 | 788 | 21 | 1 | 1 | 788 | 1 | 780 | 0.0 | 1485 |
MS.gene024734.t1 | MTR_7g010340 | 57.522 | 678 | 134 | 17 | 1 | 669 | 1 | 533 | 0.0 | 625 |
MS.gene024734.t1 | MTR_7g010340 | 55.900 | 678 | 129 | 17 | 1 | 669 | 1 | 517 | 0.0 | 598 |
MS.gene024734.t1 | MTR_3g104280 | 41.843 | 521 | 231 | 25 | 193 | 674 | 86 | 573 | 7.41e-68 | 236 |
MS.gene024734.t1 | MTR_3g104270 | 41.211 | 512 | 228 | 22 | 193 | 665 | 86 | 563 | 1.90e-66 | 232 |
MS.gene024734.t1 | MTR_1g016760 | 47.273 | 275 | 117 | 9 | 193 | 459 | 112 | 366 | 3.92e-62 | 221 |
MS.gene024734.t1 | MTR_7g010360 | 45.201 | 323 | 67 | 12 | 1 | 300 | 1 | 236 | 1.09e-44 | 172 |
MS.gene024734.t1 | MTR_6g012630 | 27.174 | 184 | 115 | 7 | 187 | 360 | 42 | 216 | 4.39e-11 | 66.6 |
MS.gene024734.t1 | MTR_6g012630 | 27.174 | 184 | 115 | 7 | 187 | 360 | 42 | 216 | 5.50e-11 | 66.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene024734.t1 | AT1G33680 | 42.212 | 841 | 324 | 33 | 1 | 758 | 1 | 762 | 1.75e-145 | 446 |
MS.gene024734.t1 | AT4G10070 | 43.649 | 740 | 332 | 31 | 1 | 711 | 1 | 684 | 2.30e-134 | 414 |
MS.gene024734.t1 | AT2G25970 | 47.479 | 238 | 123 | 2 | 193 | 429 | 134 | 370 | 7.34e-54 | 197 |
Find 293 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GGCACCTGGTTGCCCATAAC+TGG | 0.089662 | 5.3:+2723571 | None:intergenic |
TATGACTCAACCCAAGTTTA+TGG | 0.200615 | 5.3:-2723221 | MS.gene024734:CDS |
TTGTTAGCGGCTGGTTGTTC+AGG | 0.233674 | 5.3:+2723476 | None:intergenic |
GCCAGGCGAGATTCCGTATC+AGG | 0.249166 | 5.3:-2723762 | MS.gene024734:CDS |
GTTCAGGTTGGCGTACTTAT+TGG | 0.253689 | 5.3:-2728168 | MS.gene024734:intron |
CAGTTTATCACCTTCTCATT+TGG | 0.256871 | 5.3:+2727793 | None:intergenic |
TGCTCAGTTGACTCCATTGA+TGG | 0.270905 | 5.3:+2730927 | None:intergenic |
AAGAGCCTGCAGACCAAAAC+TGG | 0.283772 | 5.3:-2727658 | MS.gene024734:CDS |
GGCTGTTCAGTTGCTTTAGA+TGG | 0.289174 | 5.3:+2730948 | None:intergenic |
CAGCCTCAGGGTCAGGATTA+TGG | 0.301261 | 5.3:-2724040 | MS.gene024734:CDS |
AAACTTGGGTTGAGTCATAT+TGG | 0.301611 | 5.3:+2723225 | None:intergenic |
CTGGATGCGTGCCCCAGTTT+TGG | 0.305898 | 5.3:+2727645 | None:intergenic |
TCATATGCACCTCCTCCTTA+TGG | 0.307453 | 5.3:-2724310 | MS.gene024734:CDS |
ACTGAGCAAGACGCTTCTTC+TGG | 0.308215 | 5.3:-2730912 | MS.gene024734:CDS |
ATCTGGTGGTCCACCCCAAT+GGG | 0.316449 | 5.3:-2724410 | MS.gene024734:CDS |
ACAAGGCCTGTTGAACTAAT+AGG | 0.318881 | 5.3:-2728054 | MS.gene024734:CDS |
GAAAGGACTGTCCAAGTTAC+TGG | 0.320619 | 5.3:-2726697 | MS.gene024734:CDS |
CACTGTTGTAAGCAGGATCC+TGG | 0.326871 | 5.3:+2723429 | None:intergenic |
CCTGGTGGACAGCCCAGTTA+TGG | 0.329458 | 5.3:-2723584 | MS.gene024734:CDS |
TCCTTTCGAAAATGCTCCTT+TGG | 0.330000 | 5.3:-2731114 | MS.gene024734:CDS |
CCAAGGAGCAGTTACGGTTC+TGG | 0.331193 | 5.3:-2724265 | MS.gene024734:CDS |
GGCGTACTTATTGGCAAATC+TGG | 0.332530 | 5.3:-2728159 | MS.gene024734:CDS |
GCTCAGATGAATTACAATTA+TGG | 0.338699 | 5.3:-2724064 | MS.gene024734:CDS |
AGAAGGACCGGTACCATGTT+GGG | 0.340479 | 5.3:+2724114 | None:intergenic |
GCAAATCTGGTGACACTATA+CGG | 0.340935 | 5.3:-2728146 | MS.gene024734:CDS |
CGCTTACAATCAGAAGAAAC+AGG | 0.347578 | 5.3:+2732214 | None:intergenic |
TTCTTTAGAATCATCGCCTT+CGG | 0.348747 | 5.3:+2726717 | None:intergenic |
AAAGTTCCTATTAGTTCAAC+AGG | 0.349651 | 5.3:+2728048 | None:intergenic |
ACGGTACCTGCAGTATAATT+CGG | 0.353164 | 5.3:-2728127 | MS.gene024734:CDS |
TCCTTCTCCTTTACCCTCCA+TGG | 0.353311 | 5.3:-2724098 | MS.gene024734:CDS |
GGGTAAGCTGGCTGAGGATT+TGG | 0.356446 | 5.3:+2723905 | None:intergenic |
GGTCAGCGAGGTTCACATTA+TGG | 0.357233 | 5.3:-2724388 | MS.gene024734:CDS |
ATGTCGTACCTAGGTCATTC+TGG | 0.361703 | 5.3:+2732074 | None:intergenic |
CCATATCCATATGCATCATC+TGG | 0.361945 | 5.3:-2723701 | MS.gene024734:CDS |
AGGTCATCATCAGGTGGTTT+TGG | 0.368182 | 5.3:-2724460 | MS.gene024734:CDS |
TTACAGAATGACACTTCTTC+AGG | 0.372488 | 5.3:-2730852 | MS.gene024734:CDS |
CAGGGGCCACCCTCACATAA+TGG | 0.372854 | 5.3:-2724214 | MS.gene024734:CDS |
TAAGGTGGGGTCAATAAAAC+TGG | 0.374111 | 5.3:+2730872 | None:intergenic |
ATGCAGGTCGGGTTAATCAT+TGG | 0.377319 | 5.3:-2727700 | MS.gene024734:intron |
AACTTGGGTTGAGTCATATT+GGG | 0.378107 | 5.3:+2723226 | None:intergenic |
GCAGGAGCACCGGCTGCTGC+TGG | 0.382386 | 5.3:+2723290 | None:intergenic |
GGGGACTGAACTGGGATGCT+GGG | 0.385001 | 5.3:+2724135 | None:intergenic |
GCTGCATAGCCTGCTGGTTG+AGG | 0.385429 | 5.3:+2723317 | None:intergenic |
CCAGATGATGCATATGGATA+TGG | 0.385841 | 5.3:+2723701 | None:intergenic |
CTTTGCTGGAATAGCCTATC+AGG | 0.389163 | 5.3:-2724480 | MS.gene024734:intron |
GCGCATAACTAGCTGTGGCC+TGG | 0.391139 | 5.3:+2723549 | None:intergenic |
GTTGTTCAGGGTAAGTCTGC+TGG | 0.392931 | 5.3:+2723489 | None:intergenic |
CAAGCAGCATATCCTACATA+TGG | 0.393896 | 5.3:-2723671 | MS.gene024734:CDS |
AATGGTGGATATGATTATTA+TGG | 0.394577 | 5.3:-2724196 | MS.gene024734:CDS |
TGCAGGTCGGGTTAATCATT+GGG | 0.396077 | 5.3:-2727699 | MS.gene024734:intron |
AATCGAGGTTCCTAGCAATA+AGG | 0.397890 | 5.3:-2730787 | MS.gene024734:intron |
CGCATAACTAGCTGTGGCCT+GGG | 0.398000 | 5.3:+2723550 | None:intergenic |
GTGTTGGCAGCTAATACTAA+TGG | 0.398131 | 5.3:-2731188 | MS.gene024734:intron |
TCCTTTGGAAAATGCTCCTT+CGG | 0.400218 | 5.3:-2731099 | MS.gene024734:CDS |
CCATAACTGGGCTGTCCACC+AGG | 0.401150 | 5.3:+2723584 | None:intergenic |
TCCTTACCAGAGTCCTCAAC+AGG | 0.405365 | 5.3:+2730984 | None:intergenic |
CTAGCTGTGGCCTGGGCACC+TGG | 0.405662 | 5.3:+2723557 | None:intergenic |
CTGCTGGTTGAGGGTTAGAT+TGG | 0.406286 | 5.3:+2723327 | None:intergenic |
CTGGTGGACAGCCCAGTTAT+GGG | 0.408280 | 5.3:-2723583 | MS.gene024734:CDS |
TACCGTCCGCCACGAGGATC+TGG | 0.408928 | 5.3:-2724427 | MS.gene024734:CDS |
TCTTTAGAATCATCGCCTTC+GGG | 0.410748 | 5.3:+2726718 | None:intergenic |
ATCGAGGAGCACCATAAACT+TGG | 0.411128 | 5.3:+2723210 | None:intergenic |
AACTGGGCTGTCCACCAGGC+TGG | 0.412125 | 5.3:+2723588 | None:intergenic |
TCGCTTGAGCACTGGCTTGA+GGG | 0.412219 | 5.3:+2723885 | None:intergenic |
GGGTTAATCATTGGGAAAGG+TGG | 0.413875 | 5.3:-2727691 | MS.gene024734:CDS |
TGAACCTCGCTGACCCCATT+GGG | 0.416626 | 5.3:+2724396 | None:intergenic |
TCGCCTGGCTGAGTGGCTCT+AGG | 0.418678 | 5.3:+2723776 | None:intergenic |
GCCGCTAACAACGCAGGTTA+TGG | 0.423666 | 5.3:-2723464 | MS.gene024734:CDS |
GCCTCTTATCACCAGTAACT+TGG | 0.424651 | 5.3:+2726686 | None:intergenic |
CAACCCACACCAACTCAAAC+TGG | 0.425178 | 5.3:-2723356 | MS.gene024734:CDS |
CAAGTTGGTCCTACTGGTTA+TGG | 0.425563 | 5.3:-2723527 | MS.gene024734:CDS |
TAATTGTAATTCATCTGAGC+TGG | 0.428502 | 5.3:+2724067 | None:intergenic |
TATGCACCTCCCCAGCAGTA+TGG | 0.428958 | 5.3:-2723860 | MS.gene024734:CDS |
CGGTACCTGCAGTATAATTC+GGG | 0.432942 | 5.3:-2728126 | MS.gene024734:CDS |
TGTTGAACTAATAGGAACTT+TGG | 0.433245 | 5.3:-2728046 | MS.gene024734:CDS |
TTACAATTATGGACAGCCTC+AGG | 0.433579 | 5.3:-2724053 | MS.gene024734:CDS |
GGATGTCCTGCCTGCTGATA+AGG | 0.436143 | 5.3:+2724007 | None:intergenic |
GGACAACATCCACAGTCTTA+TGG | 0.440152 | 5.3:-2723803 | MS.gene024734:CDS |
CATCAGCATCCCTAGTGATC+TGG | 0.442017 | 5.3:+2728094 | None:intergenic |
TACACCGTCAGTGTTGGATT+CGG | 0.445096 | 5.3:+2732162 | None:intergenic |
ATCTCTTTGACATCCTCAAC+GGG | 0.445474 | 5.3:+2731008 | None:intergenic |
GATTGATTATGAGAAGGATA+TGG | 0.449530 | 5.3:+2724331 | None:intergenic |
TATGCGCAAGTTGGTCCTAC+TGG | 0.450191 | 5.3:-2723533 | MS.gene024734:CDS |
GGTACAGCTGCATAGCCTGC+TGG | 0.451375 | 5.3:+2723311 | None:intergenic |
GAAATTCCACAGGCTGATGC+TGG | 0.452709 | 5.3:-2727895 | MS.gene024734:intron |
CAAAACTGGGGCACGCATCC+AGG | 0.456019 | 5.3:-2727644 | MS.gene024734:intron |
CACCCTAGAGCCACTCAGCC+AGG | 0.456187 | 5.3:-2723779 | MS.gene024734:CDS |
TGCATAATTCGCTTGAGCAC+TGG | 0.456659 | 5.3:+2723877 | None:intergenic |
TATGGCAAGCCACCGTTGTA+TGG | 0.457045 | 5.3:-2723842 | MS.gene024734:CDS |
GTGGCGGACGGTAGGCCTGC+TGG | 0.458635 | 5.3:+2724437 | None:intergenic |
ACCGTCAGTGTTGGATTCGG+TGG | 0.459315 | 5.3:+2732165 | None:intergenic |
ACGGTGGCTTGCCATACTGC+TGG | 0.460842 | 5.3:+2723849 | None:intergenic |
CCCGCAGTCTGCACCTGGAC+AGG | 0.461205 | 5.3:-2723618 | MS.gene024734:CDS |
CTCCCCTGCTCAGGCTATCG+TGG | 0.463470 | 5.3:-2727842 | MS.gene024734:CDS |
CTGCATAGCCTGCTGGTTGA+GGG | 0.464272 | 5.3:+2723318 | None:intergenic |
GAGCAGTTACGGTTCTGGTT+GGG | 0.467510 | 5.3:-2724260 | MS.gene024734:CDS |
TCGAGGCCTCTCCCCTGCTC+AGG | 0.468246 | 5.3:-2727851 | MS.gene024734:CDS |
GGACATCCTCAACAAGGTTA+TGG | 0.468279 | 5.3:-2723992 | MS.gene024734:CDS |
TGGAAATTATCCTCAACATA+TGG | 0.468726 | 5.3:-2724290 | MS.gene024734:CDS |
GCCGGTGCTCCTGCAGCATA+CGG | 0.469173 | 5.3:-2723281 | MS.gene024734:CDS |
TGTTAGCGGCTGGTTGTTCA+GGG | 0.470020 | 5.3:+2723477 | None:intergenic |
ATCCTCAACGGGAATCTCAT+TGG | 0.470692 | 5.3:+2731019 | None:intergenic |
GGCTGGGCATAAACCTGTCC+AGG | 0.472801 | 5.3:+2723605 | None:intergenic |
CCACCTGATGATGACCTGAT+AGG | 0.474279 | 5.3:+2724466 | None:intergenic |
CGGTGGCTTGCCATACTGCT+GGG | 0.476941 | 5.3:+2723850 | None:intergenic |
CCTCCATATGGATATTGTGC+AGG | 0.477000 | 5.3:+2723932 | None:intergenic |
CCCTGATACGGAATCTCGCC+TGG | 0.477066 | 5.3:+2723761 | None:intergenic |
AAGCAGGATCCTGGGGTGCT+TGG | 0.479506 | 5.3:+2723438 | None:intergenic |
GGGTCAATAAAACTGGAATC+AGG | 0.480719 | 5.3:+2730879 | None:intergenic |
TTATGGACAGCCTCAGGGTC+AGG | 0.481108 | 5.3:-2724047 | MS.gene024734:CDS |
GGTAAGTCTGCTGGGAAGAC+GGG | 0.482908 | 5.3:+2723498 | None:intergenic |
TAACCTGCGTTGTTAGCGGC+TGG | 0.483555 | 5.3:+2723467 | None:intergenic |
GGATTTGGATGTCCTCCATA+TGG | 0.484661 | 5.3:+2723920 | None:intergenic |
ACATAACCTGGCTGCACAGT+TGG | 0.486266 | 5.3:+2723380 | None:intergenic |
CGCCTGGCTGAGTGGCTCTA+GGG | 0.490124 | 5.3:+2723777 | None:intergenic |
ACTGTTGTAAGCAGGATCCT+GGG | 0.490279 | 5.3:+2723430 | None:intergenic |
CCAGAACCGTAACTGCTCCT+TGG | 0.490935 | 5.3:+2724265 | None:intergenic |
GATCTGGTGGTCCACCCCAA+TGG | 0.493018 | 5.3:-2724411 | MS.gene024734:CDS |
AGCAACTGAACAGCCATCAA+TGG | 0.493080 | 5.3:-2730940 | MS.gene024734:CDS |
GCACCTGGTTGCCCATAACT+GGG | 0.497721 | 5.3:+2723572 | None:intergenic |
GTGAACCTCGCTGACCCCAT+TGG | 0.497859 | 5.3:+2724395 | None:intergenic |
CCTTCTCCTTTACCCTCCAT+GGG | 0.498897 | 5.3:-2724097 | MS.gene024734:CDS |
CTGAGCTGGGGATGGTCCCA+TGG | 0.499599 | 5.3:+2724081 | None:intergenic |
GAGATTCCTGTTGAGGACTC+TGG | 0.499644 | 5.3:-2730990 | MS.gene024734:CDS |
CAGCCCAGTTATGGGCAACC+AGG | 0.499664 | 5.3:-2723575 | MS.gene024734:CDS |
TTATGGGCAACCAGGTGCCC+AGG | 0.502933 | 5.3:-2723567 | MS.gene024734:CDS |
GCACTGGCTTGAGGGTAAGC+TGG | 0.504108 | 5.3:+2723893 | None:intergenic |
ATGGATATTGTGCAGGGCCA+CGG | 0.504139 | 5.3:+2723939 | None:intergenic |
TCCAAGTTACTGGTGATAAG+AGG | 0.505553 | 5.3:-2726687 | MS.gene024734:CDS |
TTCGCTTGAGCACTGGCTTG+AGG | 0.507075 | 5.3:+2723884 | None:intergenic |
TCGTGTGGTTGTGTCAGACT+CGG | 0.507762 | 5.3:+2730812 | None:intergenic |
GATGGTCCCATGGAGGGTAA+AGG | 0.507966 | 5.3:+2724091 | None:intergenic |
GAAGAAACAGGGCTTGTAGC+TGG | 0.509067 | 5.3:+2732226 | None:intergenic |
GGACAGGTTTATGCCCAGCC+TGG | 0.511456 | 5.3:-2723602 | MS.gene024734:CDS |
CGATAGCCTGAGCAGGGGAG+AGG | 0.512286 | 5.3:+2727845 | None:intergenic |
TGAAGAAGTGTCATTCTGTA+AGG | 0.512662 | 5.3:+2730854 | None:intergenic |
TTGTTCAGGGTAAGTCTGCT+GGG | 0.512955 | 5.3:+2723490 | None:intergenic |
TGTTGAGGATAATTTCCATA+AGG | 0.513807 | 5.3:+2724295 | None:intergenic |
TCTACTCCAGCACAATCATA+TGG | 0.514595 | 5.3:-2723737 | MS.gene024734:CDS |
GGCCCTGCACAATATCCATA+TGG | 0.514725 | 5.3:-2723935 | MS.gene024734:CDS |
ATGGCTCCAAGGAGCAGTTA+CGG | 0.518058 | 5.3:-2724271 | MS.gene024734:CDS |
ACTGTCTTGCCGTATGCTGC+AGG | 0.519390 | 5.3:+2723272 | None:intergenic |
GTGCAAAGATCCAGATCACT+AGG | 0.520840 | 5.3:-2728104 | MS.gene024734:CDS |
GCCGTATGCTGCAGGAGCAC+CGG | 0.521123 | 5.3:+2723280 | None:intergenic |
GAGAAGGACCGGTACCATGT+TGG | 0.521552 | 5.3:+2724113 | None:intergenic |
TAGCCTATCAGGTCATCATC+AGG | 0.521896 | 5.3:-2724469 | MS.gene024734:CDS |
AGGCCTCGAGCTACAAGTGC+AGG | 0.522201 | 5.3:+2727865 | None:intergenic |
TGGGCATAAGCAGCGGGCTG+AGG | 0.523158 | 5.3:+2723245 | None:intergenic |
GCAGCTGTACCAGCAGCAGC+CGG | 0.525098 | 5.3:-2723299 | MS.gene024734:CDS |
TACTAATGGACATCAAGAAA+AGG | 0.526778 | 5.3:-2731174 | MS.gene024734:CDS |
CCTGTCCAGGTGCAGACTGC+GGG | 0.527053 | 5.3:+2723618 | None:intergenic |
AGTCACCCGCAGTCTGCACC+TGG | 0.528460 | 5.3:-2723623 | MS.gene024734:CDS |
GGGTAAGTCTGCTGGGAAGA+CGG | 0.528672 | 5.3:+2723497 | None:intergenic |
CGGAATCTCGCCTGGCTGAG+TGG | 0.531568 | 5.3:+2723769 | None:intergenic |
GGTTAATCATTGGGAAAGGT+GGG | 0.531773 | 5.3:-2727690 | MS.gene024734:CDS |
AATTGTAATTCATCTGAGCT+GGG | 0.532849 | 5.3:+2724068 | None:intergenic |
ACGGTTCTGGTTGGGAGCAA+AGG | 0.533493 | 5.3:-2724252 | MS.gene024734:CDS |
GGCCCCTGAAAACTCTGGTG+AGG | 0.534001 | 5.3:+2724229 | None:intergenic |
AGTTTCTACACCGTCAGTGT+TGG | 0.535493 | 5.3:+2732156 | None:intergenic |
AATACACATACCTTATTGCT+AGG | 0.536065 | 5.3:+2730777 | None:intergenic |
GATAAAAGAAGTCTTGAGCC+AGG | 0.537717 | 5.3:-2726641 | MS.gene024734:intron |
ACTGGGCTGTCCACCAGGCT+GGG | 0.539109 | 5.3:+2723589 | None:intergenic |
CCTAGCTATGGCTGAAGAAG+AGG | 0.540273 | 5.3:-2732263 | None:intergenic |
GCCATAACCTGCGTTGTTAG+CGG | 0.542816 | 5.3:+2723463 | None:intergenic |
GTAACCAGTTTGAGTTGGTG+TGG | 0.543877 | 5.3:+2723352 | None:intergenic |
GATCCCACGATAGCCTGAGC+AGG | 0.544382 | 5.3:+2727838 | None:intergenic |
TCCTGTTGAGGACTCTGGTA+AGG | 0.544945 | 5.3:-2730985 | MS.gene024734:CDS |
TTATGGCTACCAAGCACCCC+AGG | 0.545153 | 5.3:-2723447 | MS.gene024734:CDS |
TCCCCTGCTCAGGCTATCGT+GGG | 0.545298 | 5.3:-2727841 | MS.gene024734:CDS |
GAAGTGTCATTCTGTAAGGT+GGG | 0.546448 | 5.3:+2730858 | None:intergenic |
CTGGGATGCTGGGCAGATGA+AGG | 0.550410 | 5.3:+2724145 | None:intergenic |
TCATCAGACACCTTATCAGC+AGG | 0.553463 | 5.3:-2724017 | MS.gene024734:CDS |
CCTCGCTGACCCCATTGGGG+TGG | 0.554723 | 5.3:+2724400 | None:intergenic |
GATGGCCCAGATGATGCATA+TGG | 0.555394 | 5.3:+2723695 | None:intergenic |
AGCTGGGGATGGTCCCATGG+AGG | 0.556204 | 5.3:+2724084 | None:intergenic |
GCAGCTCCAACTGTGCAGCC+AGG | 0.558834 | 5.3:-2723386 | MS.gene024734:CDS |
GGAGCAGTTACGGTTCTGGT+TGG | 0.559653 | 5.3:-2724261 | MS.gene024734:CDS |
CCGTCAGTGTTGGATTCGGT+GGG | 0.560541 | 5.3:+2732166 | None:intergenic |
GGTGGATATGATTATTATGG+TGG | 0.562699 | 5.3:-2724193 | MS.gene024734:CDS |
CAATCTAACCCTCAACCAGC+AGG | 0.562879 | 5.3:-2723326 | MS.gene024734:CDS |
TCATATTGGGCATAAGCAGC+GGG | 0.563343 | 5.3:+2723239 | None:intergenic |
TAACCAGTTTGAGTTGGTGT+GGG | 0.565713 | 5.3:+2723353 | None:intergenic |
AAGCAGCATATCCTACATAT+GGG | 0.567067 | 5.3:-2723670 | MS.gene024734:CDS |
GAAGGACCGGTACCATGTTG+GGG | 0.570002 | 5.3:+2724115 | None:intergenic |
GCAGCGCCACTGTTGTAAGC+AGG | 0.571040 | 5.3:+2723422 | None:intergenic |
CTCCTTGGAGCCATATGTTG+AGG | 0.573692 | 5.3:+2724280 | None:intergenic |
AAGGCGATGATTCTAAAGAA+AGG | 0.574886 | 5.3:-2726714 | MS.gene024734:CDS |
AGAGCCTGCAGACCAAAACT+GGG | 0.576264 | 5.3:-2727657 | MS.gene024734:CDS |
AGATCCTCGTGGCGGACGGT+AGG | 0.576333 | 5.3:+2724429 | None:intergenic |
CATATCCATATGCATCATCT+GGG | 0.577251 | 5.3:-2723700 | MS.gene024734:CDS |
AGAAGTGTCATTCTGTAAGG+TGG | 0.579993 | 5.3:+2730857 | None:intergenic |
TGACGCCGCTGCAGTTGCTG+AGG | 0.581663 | 5.3:-2732134 | MS.gene024734:CDS |
TAATTCATCTGAGCTGGGGA+TGG | 0.582659 | 5.3:+2724073 | None:intergenic |
CTGTTGTAAGCAGGATCCTG+GGG | 0.583236 | 5.3:+2723431 | None:intergenic |
CACCAGATCCTCGTGGCGGA+CGG | 0.583322 | 5.3:+2724425 | None:intergenic |
GGATGTTGTCCTTGTGAAGG+TGG | 0.583512 | 5.3:+2723815 | None:intergenic |
CCCATGGAGGGTAAAGGAGA+AGG | 0.583548 | 5.3:+2724097 | None:intergenic |
TTTGGAAAATGCTCCTTCGG+AGG | 0.583555 | 5.3:-2731096 | MS.gene024734:CDS |
GGATAATTTCCATAAGGAGG+AGG | 0.583935 | 5.3:+2724301 | None:intergenic |
TGGTCGTAACCAGTTTGAGT+TGG | 0.584239 | 5.3:+2723347 | None:intergenic |
CATATGACTATCAGCACCGC+GGG | 0.584630 | 5.3:-2724354 | MS.gene024734:CDS |
CTCCATATGGATATTGTGCA+GGG | 0.585287 | 5.3:+2723933 | None:intergenic |
GGAGGGTAAAGGAGAAGGAC+CGG | 0.585487 | 5.3:+2724102 | None:intergenic |
GTTGTGTCAGACTCGGATAT+AGG | 0.586274 | 5.3:+2730819 | None:intergenic |
CGGTGCTGATAGTCATATGA+TGG | 0.586322 | 5.3:+2724358 | None:intergenic |
TGACTGTAACCATCTGCAGC+TGG | 0.588200 | 5.3:+2723641 | None:intergenic |
TGTCAAAGAGATTCCTGTTG+AGG | 0.588403 | 5.3:-2730997 | MS.gene024734:CDS |
CCTTGTCCATAACCTTGTTG+AGG | 0.589130 | 5.3:+2723986 | None:intergenic |
GCTTGAGGGTAAGCTGGCTG+AGG | 0.589420 | 5.3:+2723899 | None:intergenic |
GGCTTGCCATACTGCTGGGG+AGG | 0.589568 | 5.3:+2723854 | None:intergenic |
GCTGGGGATGGTCCCATGGA+GGG | 0.591933 | 5.3:+2724085 | None:intergenic |
GCTGGTGCAGACCCATATGT+AGG | 0.592494 | 5.3:+2723659 | None:intergenic |
ATCCCACGATAGCCTGAGCA+GGG | 0.592936 | 5.3:+2727839 | None:intergenic |
ATCATATCCACCATTATGTG+AGG | 0.594833 | 5.3:+2724204 | None:intergenic |
AATCTCTTTGACATCCTCAA+CGG | 0.595049 | 5.3:+2731007 | None:intergenic |
ACCTGTCCAGGTGCAGACTG+CGG | 0.595220 | 5.3:+2723617 | None:intergenic |
TACAATTATGGACAGCCTCA+GGG | 0.595891 | 5.3:-2724052 | MS.gene024734:CDS |
GTCATATTGGGCATAAGCAG+CGG | 0.596829 | 5.3:+2723238 | None:intergenic |
GATACAAGTTCCAAATGAGA+AGG | 0.597304 | 5.3:-2727803 | MS.gene024734:intron |
TCGCCTTCGGGAAGATGTTG+AGG | 0.598864 | 5.3:+2726730 | None:intergenic |
GTAGGATATGCTGCTTGTGA+TGG | 0.599015 | 5.3:+2723677 | None:intergenic |
ACAGGCCTTGTTGAAGAGTG+AGG | 0.603130 | 5.3:+2728066 | None:intergenic |
ATCCTCAACATATGGCTCCA+AGG | 0.603445 | 5.3:-2724282 | MS.gene024734:CDS |
GGGTCTGCACCAGCTGCAGA+TGG | 0.603725 | 5.3:-2723650 | MS.gene024734:CDS |
TTGCACCCGAATTATACTGC+AGG | 0.604515 | 5.3:+2728121 | None:intergenic |
CTGGCTGAGTGGCTCTAGGG+TGG | 0.605118 | 5.3:+2723780 | None:intergenic |
CTCTGGTAAGGAAAATGACA+AGG | 0.605178 | 5.3:-2730973 | MS.gene024734:CDS |
CCAGGCGAGATTCCGTATCA+GGG | 0.607791 | 5.3:-2723761 | MS.gene024734:CDS |
TGAGGATAATTTCCATAAGG+AGG | 0.609076 | 5.3:+2724298 | None:intergenic |
CCTCAACAAGGTTATGGACA+AGG | 0.609190 | 5.3:-2723986 | MS.gene024734:CDS |
TGGTTATCGTCGTCAAGACG+AGG | 0.613071 | 5.3:+2732094 | None:intergenic |
CAGGTTTATGCCCAGCCTGG+TGG | 0.613647 | 5.3:-2723599 | MS.gene024734:CDS |
AACTTGCGCATAACTAGCTG+TGG | 0.614751 | 5.3:+2723544 | None:intergenic |
GCATATGATTGATTATGAGA+AGG | 0.617478 | 5.3:+2724325 | None:intergenic |
CGTCCGCCACGAGGATCTGG+TGG | 0.619194 | 5.3:-2724424 | MS.gene024734:CDS |
CTGATCCTCACTCTTCAACA+AGG | 0.619869 | 5.3:-2728071 | MS.gene024734:CDS |
GTCGGGTTAATCATTGGGAA+AGG | 0.620723 | 5.3:-2727694 | MS.gene024734:CDS |
ACATCTTGAACTTCCTCCGA+AGG | 0.620832 | 5.3:+2731083 | None:intergenic |
TCGAGGAGCACCATAAACTT+GGG | 0.623385 | 5.3:+2723211 | None:intergenic |
CAGACACCTTATCAGCAGGC+AGG | 0.625185 | 5.3:-2724013 | MS.gene024734:CDS |
ACAGCTAGTTATGCGCAAGT+TGG | 0.627057 | 5.3:-2723542 | MS.gene024734:CDS |
GGAATCTCATTGGCATCAGT+AGG | 0.627548 | 5.3:+2731029 | None:intergenic |
GTTAATCATTGGGAAAGGTG+GGG | 0.628317 | 5.3:-2727689 | MS.gene024734:CDS |
GGTGTGGGTTGAACATAACC+TGG | 0.628424 | 5.3:+2723368 | None:intergenic |
TGTGGATGTTGTCCTTGTGA+AGG | 0.628816 | 5.3:+2723812 | None:intergenic |
GCTGGAGTAGAACCCTGATA+CGG | 0.630359 | 5.3:+2723749 | None:intergenic |
TCAAGAAAAGGAAGTTGCTG+AGG | 0.630607 | 5.3:-2731162 | MS.gene024734:CDS |
ACTGTGCCATATGATTGTGC+TGG | 0.633161 | 5.3:+2723731 | None:intergenic |
AGGGTGGCCCCTGAAAACTC+TGG | 0.635256 | 5.3:+2724224 | None:intergenic |
GGTGGCTTGCCATACTGCTG+GGG | 0.637360 | 5.3:+2723851 | None:intergenic |
CAGGATCCTGCTTACAACAG+TGG | 0.637586 | 5.3:-2723428 | MS.gene024734:CDS |
ATCGTCCTCAGCAACTGCAG+CGG | 0.638462 | 5.3:+2732129 | None:intergenic |
TCATATCCACCATTATGTGA+GGG | 0.639095 | 5.3:+2724205 | None:intergenic |
ATTCCACAGGCTGATGCTGG+AGG | 0.639608 | 5.3:-2727892 | MS.gene024734:intron |
GATTATTATGGTGGACAAAG+CGG | 0.641921 | 5.3:-2724184 | MS.gene024734:CDS |
AAGGACCGGTACCATGTTGG+GGG | 0.643168 | 5.3:+2724116 | None:intergenic |
GATAGTCATATGATGGTGGT+TGG | 0.644576 | 5.3:+2724365 | None:intergenic |
TCTCCTGCACTTGTAGCTCG+AGG | 0.645902 | 5.3:-2727868 | MS.gene024734:CDS |
TATGGTGTGCCACCTTCACA+AGG | 0.647766 | 5.3:-2723824 | MS.gene024734:CDS |
AACTTTGGAAAGCATAGACA+AGG | 0.648448 | 5.3:-2728031 | MS.gene024734:CDS |
CAACCAGCCGCTAACAACGC+AGG | 0.649113 | 5.3:-2723470 | MS.gene024734:CDS |
GGGCCACCCTCACATAATGG+TGG | 0.651219 | 5.3:-2724211 | MS.gene024734:CDS |
CAGGCAGGACATCCTCAACA+AGG | 0.654329 | 5.3:-2723998 | MS.gene024734:CDS |
ATTGTAATTCATCTGAGCTG+GGG | 0.655860 | 5.3:+2724069 | None:intergenic |
TATCCACCATTATGTGAGGG+TGG | 0.659251 | 5.3:+2724208 | None:intergenic |
ATACCTCAACATCTTCCCGA+AGG | 0.661549 | 5.3:-2726733 | MS.gene024734:CDS |
CAGGCCTACCGTCCGCCACG+AGG | 0.664533 | 5.3:-2724433 | MS.gene024734:CDS |
TGCTGATAGTCATATGATGG+TGG | 0.665307 | 5.3:+2724361 | None:intergenic |
CTAGGGTGGCCATAAGACTG+TGG | 0.667005 | 5.3:+2723794 | None:intergenic |
CCACCCCAATGGGGTCAGCG+AGG | 0.668636 | 5.3:-2724400 | MS.gene024734:CDS |
GGGTATGATCCATAACCAGT+AGG | 0.670355 | 5.3:+2723518 | None:intergenic |
TCCCACGATAGCCTGAGCAG+GGG | 0.672197 | 5.3:+2727840 | None:intergenic |
TGCAAAGATCCAGATCACTA+GGG | 0.672341 | 5.3:-2728103 | MS.gene024734:CDS |
CCTGCACAATATCCATATGG+AGG | 0.672775 | 5.3:-2723932 | MS.gene024734:CDS |
TGCCAATGAGATTCCCGTTG+AGG | 0.673173 | 5.3:-2731021 | MS.gene024734:CDS |
GCTTACAATCAGAAGAAACA+GGG | 0.675017 | 5.3:+2732215 | None:intergenic |
CCCACCGAATCCAACACTGA+CGG | 0.677283 | 5.3:-2732166 | MS.gene024734:CDS |
TGAGGCAGAAACAGAAACAG+AGG | 0.677467 | 5.3:-2731144 | MS.gene024734:CDS |
CCTATCAGGTCATCATCAGG+TGG | 0.685141 | 5.3:-2724466 | MS.gene024734:CDS |
AAGTGTCATTCTGTAAGGTG+GGG | 0.686055 | 5.3:+2730859 | None:intergenic |
GACGATAACCAGAATGACCT+AGG | 0.692835 | 5.3:-2732082 | MS.gene024734:intron |
GAACCTCGCTGACCCCATTG+GGG | 0.701978 | 5.3:+2724397 | None:intergenic |
TATGAGAAGGATATGGCCCG+CGG | 0.706134 | 5.3:+2724338 | None:intergenic |
GAATCGAAGTACGAAAACCG+TGG | 0.723766 | 5.3:-2723956 | MS.gene024734:CDS |
GAAGGTGGCACACCATACAA+CGG | 0.724316 | 5.3:+2723830 | None:intergenic |
TCTGGTGGTCCACCCCAATG+GGG | 0.728168 | 5.3:-2724409 | MS.gene024734:CDS |
GGTGGACCACCAGATCCTCG+TGG | 0.736923 | 5.3:+2724418 | None:intergenic |
AATGAATGCTGTGATTGCAG+AGG | 0.739384 | 5.3:-2727998 | MS.gene024734:intron |
TGACCATAATCCTGACCCTG+AGG | 0.742155 | 5.3:+2724037 | None:intergenic |
GGTGGCACACCATACAACGG+TGG | 0.744350 | 5.3:+2723833 | None:intergenic |
TCATATGACTATCAGCACCG+CGG | 0.747919 | 5.3:-2724355 | MS.gene024734:CDS |
GAGCCTGCAGACCAAAACTG+GGG | 0.750434 | 5.3:-2727656 | MS.gene024734:CDS |
GGACCACCAGATCCTCGTGG+CGG | 0.754108 | 5.3:+2724421 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.3 | gene | 2723208 | 2732278 | 2723208 | ID=MS.gene024734 |
chr5.3 | mRNA | 2723208 | 2732278 | 2723208 | ID=MS.gene024734.t1;Parent=MS.gene024734 |
chr5.3 | exon | 2732083 | 2732278 | 2732083 | ID=MS.gene024734.t1.exon1;Parent=MS.gene024734.t1 |
chr5.3 | CDS | 2732083 | 2732278 | 2732083 | ID=cds.MS.gene024734.t1;Parent=MS.gene024734.t1 |
chr5.3 | exon | 2730788 | 2731200 | 2730788 | ID=MS.gene024734.t1.exon2;Parent=MS.gene024734.t1 |
chr5.3 | CDS | 2730788 | 2731200 | 2730788 | ID=cds.MS.gene024734.t1;Parent=MS.gene024734.t1 |
chr5.3 | exon | 2727999 | 2728184 | 2727999 | ID=MS.gene024734.t1.exon3;Parent=MS.gene024734.t1 |
chr5.3 | CDS | 2727999 | 2728184 | 2727999 | ID=cds.MS.gene024734.t1;Parent=MS.gene024734.t1 |
chr5.3 | exon | 2727804 | 2727905 | 2727804 | ID=MS.gene024734.t1.exon4;Parent=MS.gene024734.t1 |
chr5.3 | CDS | 2727804 | 2727905 | 2727804 | ID=cds.MS.gene024734.t1;Parent=MS.gene024734.t1 |
chr5.3 | exon | 2727645 | 2727716 | 2727645 | ID=MS.gene024734.t1.exon5;Parent=MS.gene024734.t1 |
chr5.3 | CDS | 2727645 | 2727716 | 2727645 | ID=cds.MS.gene024734.t1;Parent=MS.gene024734.t1 |
chr5.3 | exon | 2726642 | 2726758 | 2726642 | ID=MS.gene024734.t1.exon6;Parent=MS.gene024734.t1 |
chr5.3 | CDS | 2726642 | 2726758 | 2726642 | ID=cds.MS.gene024734.t1;Parent=MS.gene024734.t1 |
chr5.3 | exon | 2723208 | 2724488 | 2723208 | ID=MS.gene024734.t1.exon7;Parent=MS.gene024734.t1 |
chr5.3 | CDS | 2723208 | 2724488 | 2723208 | ID=cds.MS.gene024734.t1;Parent=MS.gene024734.t1 |
Gene Sequence |
Protein sequence |