Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79599.t1 | AES77415.2 | 87.2 | 477 | 56 | 2 | 1 | 477 | 1 | 472 | 7.00E-179 | 637.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79599.t1 | G7L0X5 | 87.2 | 477 | 56 | 2 | 1 | 477 | 1 | 472 | 5.0e-179 | 637.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050752 | MS.gene79599 | -0.815051 | 1.13E-51 | -1.69E-46 |
| MS.gene050955 | MS.gene79599 | -0.812424 | 4.27E-51 | -1.69E-46 |
| MS.gene051003 | MS.gene79599 | -0.829016 | 6.52E-55 | -1.69E-46 |
| MS.gene051756 | MS.gene79599 | -0.818328 | 2.08E-52 | -1.69E-46 |
| MS.gene051848 | MS.gene79599 | 0.81322 | 2.86E-51 | -1.69E-46 |
| MS.gene05188 | MS.gene79599 | -0.806844 | 6.75E-50 | -1.69E-46 |
| MS.gene051903 | MS.gene79599 | -0.806419 | 8.30E-50 | -1.69E-46 |
| MS.gene051975 | MS.gene79599 | -0.810823 | 9.52E-51 | -1.69E-46 |
| MS.gene052818 | MS.gene79599 | 0.833226 | 6.02E-56 | -1.69E-46 |
| MS.gene053058 | MS.gene79599 | -0.805432 | 1.34E-49 | -1.69E-46 |
| MS.gene053298 | MS.gene79599 | -0.829845 | 4.10E-55 | -1.69E-46 |
| MS.gene053340 | MS.gene79599 | -0.806846 | 6.75E-50 | -1.69E-46 |
| MS.gene053963 | MS.gene79599 | -0.807142 | 5.84E-50 | -1.69E-46 |
| MS.gene054403 | MS.gene79599 | -0.818384 | 2.02E-52 | -1.69E-46 |
| MS.gene05469 | MS.gene79599 | -0.853358 | 2.52E-61 | -1.69E-46 |
| MS.gene055603 | MS.gene79599 | -0.8109 | 9.16E-51 | -1.69E-46 |
| MS.gene056787 | MS.gene79599 | -0.805205 | 1.49E-49 | -1.69E-46 |
| MS.gene056986 | MS.gene79599 | -0.842893 | 1.96E-58 | -1.69E-46 |
| MS.gene057890 | MS.gene79599 | 0.803321 | 3.69E-49 | -1.69E-46 |
| MS.gene057999 | MS.gene79599 | -0.826295 | 2.93E-54 | -1.69E-46 |
| MS.gene058238 | MS.gene79599 | -0.813958 | 1.97E-51 | -1.69E-46 |
| MS.gene058708 | MS.gene79599 | 0.802545 | 5.33E-49 | -1.69E-46 |
| MS.gene059360 | MS.gene79599 | -0.807435 | 5.06E-50 | -1.69E-46 |
| MS.gene05985 | MS.gene79599 | 0.804275 | 2.34E-49 | -1.69E-46 |
| MS.gene059872 | MS.gene79599 | 0.837724 | 4.39E-57 | -1.69E-46 |
| MS.gene059901 | MS.gene79599 | 0.809026 | 2.32E-50 | -1.69E-46 |
| MS.gene06011 | MS.gene79599 | -0.86217 | 6.13E-64 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene79599 | MS.gene04185 | PPI |
| MS.gene79599 | MS.gene072735 | PPI |
| MS.gene79599 | MS.gene04307 | PPI |
| MS.gene79599 | MS.gene024674 | PPI |
| MS.gene85900 | MS.gene79599 | PPI |
| MS.gene79599 | MS.gene21656 | PPI |
| MS.gene79599 | MS.gene22316 | PPI |
| MS.gene79599 | MS.gene78555 | PPI |
| MS.gene79599 | MS.gene05659 | PPI |
| MS.gene79599 | MS.gene53118 | PPI |
| MS.gene79599 | MS.gene55323 | PPI |
| MS.gene79599 | MS.gene94960 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79599.t1 | MTR_7g010340 | 88.475 | 564 | 60 | 2 | 1 | 564 | 1 | 559 | 0.0 | 985 |
| MS.gene79599.t1 | MTR_7g010340 | 82.677 | 127 | 21 | 1 | 521 | 646 | 434 | 560 | 2.04e-59 | 209 |
| MS.gene79599.t1 | MTR_7g010340 | 80.556 | 108 | 21 | 0 | 563 | 670 | 436 | 543 | 1.32e-46 | 174 |
| MS.gene79599.t1 | MTR_7g010340 | 85.816 | 564 | 59 | 3 | 1 | 564 | 1 | 543 | 0.0 | 943 |
| MS.gene79599.t1 | MTR_7g010340 | 82.677 | 127 | 21 | 1 | 521 | 646 | 418 | 544 | 1.43e-59 | 209 |
| MS.gene79599.t1 | MTR_7g010340 | 80.556 | 108 | 21 | 0 | 563 | 670 | 420 | 527 | 1.05e-46 | 174 |
| MS.gene79599.t1 | MTR_5g008420 | 59.552 | 670 | 130 | 16 | 1 | 538 | 1 | 661 | 0.0 | 645 |
| MS.gene79599.t1 | MTR_7g010360 | 66.535 | 254 | 46 | 6 | 1 | 234 | 1 | 235 | 1.04e-82 | 277 |
| MS.gene79599.t1 | MTR_1g016760 | 28.873 | 284 | 144 | 13 | 121 | 369 | 106 | 366 | 1.87e-14 | 77.4 |
| MS.gene79599.t1 | MTR_3g104270 | 27.174 | 276 | 153 | 10 | 127 | 369 | 86 | 346 | 8.24e-12 | 68.9 |
| MS.gene79599.t1 | MTR_3g104280 | 26.208 | 538 | 306 | 22 | 127 | 613 | 86 | 583 | 2.45e-11 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79599.t1 | AT4G10070 | 32.805 | 631 | 287 | 29 | 1 | 541 | 1 | 584 | 4.01e-49 | 183 |
| MS.gene79599.t1 | AT1G33680 | 32.381 | 420 | 194 | 15 | 25 | 376 | 92 | 489 | 1.96e-44 | 170 |
Find 258 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTCAATTTGAAGGATCTTT+TGG | 0.224942 | 7.3:+87751376 | MS.gene79599:CDS |
| ACCAGGCGAGATTCCGTATC+AGG | 0.257233 | 7.3:+87756514 | MS.gene79599:CDS |
| ACCAGGCGAGATTCCGTATC+AGG | 0.257233 | 7.3:+87757003 | MS.gene79599:CDS |
| CAGTTTCTCACTTTCTCATT+TGG | 0.272778 | 7.3:-87752121 | None:intergenic |
| ATGTTGTACCTAGGTAATTC+TGG | 0.295808 | 7.3:-87749239 | None:intergenic |
| TTTCAGCATGATACTTCTTC+TGG | 0.297812 | 7.3:+87749926 | MS.gene79599:CDS |
| TCATATGCACCTACTCCTTA+TGG | 0.300051 | 7.3:+87756077 | MS.gene79599:CDS |
| GAAAGGACTGTCCAAGTTAC+TGG | 0.320619 | 7.3:+87752937 | MS.gene79599:CDS |
| CTGAACAGGGGATGGACTTA+TGG | 0.321988 | 7.3:-87756306 | None:intergenic |
| CCAAGGAGCAGTTACGGTTC+TGG | 0.331193 | 7.3:+87756122 | MS.gene79599:CDS |
| TAATTGTAATTAATCTGAAC+AGG | 0.338077 | 7.3:-87756320 | None:intergenic |
| AAGTTTATCACCTTCTCATT+TGG | 0.340261 | 7.3:-87751560 | None:intergenic |
| ATAAGGACCGGTACAGTGTT+GGG | 0.343519 | 7.3:-87756273 | None:intergenic |
| GATCTGGTGGTCCACCACTA+TGG | 0.343715 | 7.3:+87755976 | MS.gene79599:CDS |
| AGTTGTTCAATTGATTTAGA+TGG | 0.351055 | 7.3:-87749878 | None:intergenic |
| GGTCAGCAAGGTTCACATTA+TGG | 0.354937 | 7.3:+87755999 | MS.gene79599:CDS |
| TATGGCAGGCCACCATTGTT+TGG | 0.373347 | 7.3:+87756557 | MS.gene79599:CDS |
| TATGGCAGGCCACCATTGTT+TGG | 0.373347 | 7.3:+87756680 | MS.gene79599:CDS |
| TATGGCAGGCCACCATTGTT+TGG | 0.374810 | 7.3:+87756800 | MS.gene79599:CDS |
| TATCTCAGGCCACCATTGTT+TGG | 0.375787 | 7.3:+87756923 | MS.gene79599:CDS |
| CGCCTGGTTGAGTGGCTCTA+GGG | 0.386919 | 7.3:-87756622 | None:intergenic |
| CGCCTGGTTGAGTGGCTCTA+GGG | 0.386919 | 7.3:-87756745 | None:intergenic |
| CGCCTGGTTGAGTGGCTCTA+GGG | 0.386919 | 7.3:-87756865 | None:intergenic |
| CGCCTGGTTGAGTGGCTCTA+GGG | 0.386919 | 7.3:-87756988 | None:intergenic |
| CTGTGAACATGGCATCCATT+AGG | 0.387204 | 7.3:-87751421 | None:intergenic |
| CTCCCCTGCTCAGGCTATTG+TGG | 0.387651 | 7.3:+87752072 | MS.gene79599:CDS |
| CTCCTCAACGAGAATCTCTT+TGG | 0.388726 | 7.3:-87749855 | None:intergenic |
| AACGAGAATCTCTTTGGTAT+TGG | 0.395832 | 7.3:-87749849 | None:intergenic |
| AATTGAGGTTCCTAGCAATA+AGG | 0.397890 | 7.3:+87749994 | MS.gene79599:CDS |
| AAGGCCTCACCAGAGTTTGC+AGG | 0.398717 | 7.3:+87756154 | MS.gene79599:CDS |
| AGGGGCCGCCCTCACACAAC+AGG | 0.399074 | 7.3:+87756174 | MS.gene79599:CDS |
| ACTTATGGCCGAAGAAGAAT+TGG | 0.406832 | 7.3:+87749116 | None:intergenic |
| ATCTGGTGGTCCACCACTAT+GGG | 0.410501 | 7.3:+87755977 | MS.gene79599:CDS |
| TCCCCTGCTCAGGCTATTGT+GGG | 0.411748 | 7.3:+87752073 | MS.gene79599:CDS |
| TTGCTTGAGCCCAGGCTTGA+GGG | 0.412088 | 7.3:-87756391 | None:intergenic |
| AAGGACAACATCCAGTCTTA+TGG | 0.414360 | 7.3:+87757083 | MS.gene79599:CDS |
| TCGCCTGGTTGAGTGGCTCT+AGG | 0.418678 | 7.3:-87756500 | None:intergenic |
| TCGCCTGGTTGAGTGGCTCT+AGG | 0.418678 | 7.3:-87756623 | None:intergenic |
| TCGCCTGGTTGAGTGGCTCT+AGG | 0.418678 | 7.3:-87756746 | None:intergenic |
| TCGCCTGGTTGAGTGGCTCT+AGG | 0.418678 | 7.3:-87756866 | None:intergenic |
| TCGCCTGGTTGAGTGGCTCT+AGG | 0.418678 | 7.3:-87756989 | None:intergenic |
| AACAACAACCAATTCTTCTT+CGG | 0.421576 | 7.3:-87749124 | None:intergenic |
| GCCTCTTATCACCAGTAACT+TGG | 0.424651 | 7.3:-87752948 | None:intergenic |
| AACAGGGGTTATGATCATTA+TGG | 0.425468 | 7.3:+87756191 | MS.gene79599:CDS |
| GATGCACCTCCACAGCAGTA+TGG | 0.435538 | 7.3:+87756416 | MS.gene79599:CDS |
| ATATGAGTTCGAAAACCTAA+TGG | 0.435925 | 7.3:+87751406 | MS.gene79599:CDS |
| TACCGTCCGCCACAAGGATC+TGG | 0.447453 | 7.3:+87755960 | MS.gene79599:CDS |
| GTGGCGGACGGTAGGCCTGC+TGG | 0.447974 | 7.3:-87755950 | None:intergenic |
| GATTGATTATGAGAGGGATA+TGG | 0.448365 | 7.3:-87756056 | None:intergenic |
| CTTTAAGGAGTTCAATTTGA+AGG | 0.450357 | 7.3:+87751367 | MS.gene79599:intron |
| CATGGCAGGCCACCATTGTA+TGG | 0.454068 | 7.3:+87757046 | MS.gene79599:CDS |
| GAAATTCCACAGGCTGATGC+TGG | 0.457417 | 7.3:+87751515 | MS.gene79599:intron |
| TAGGGTGGCCGCCATAAGAC+TGG | 0.458568 | 7.3:-87757094 | None:intergenic |
| GACAAAGGAAGCCTTGAGTC+AGG | 0.459926 | 7.3:+87752993 | MS.gene79599:CDS |
| GCCAGAGGAAAATGCTCGTT+CGG | 0.462364 | 7.3:+87749775 | MS.gene79599:CDS |
| TGCATCATTTGCTTGAGCCC+AGG | 0.464220 | 7.3:-87756399 | None:intergenic |
| TATGGAAAGCCACCATTGTA+TGG | 0.466268 | 7.3:+87756434 | MS.gene79599:CDS |
| GAAATTCCACAGGCTGATGC+TGG | 0.467198 | 7.3:+87752019 | MS.gene79599:intron |
| TGATCATTATGGTGGACAAA+GGG | 0.467199 | 7.3:+87756202 | MS.gene79599:CDS |
| GAGCAGTTACGGTTCTGGTT+GGG | 0.467510 | 7.3:+87756127 | MS.gene79599:CDS |
| TCGAGGCCTCTCCCCTGCTC+AGG | 0.468246 | 7.3:+87752063 | MS.gene79599:CDS |
| TGGAAATTATCCTCAACATA+TGG | 0.468726 | 7.3:+87756097 | MS.gene79599:CDS |
| GATAGATCTGGGATGCGGGG+CGG | 0.470004 | 7.3:-87756249 | None:intergenic |
| CCTCCATATGGATATTGTGC+AGG | 0.471773 | 7.3:-87756356 | None:intergenic |
| CCCTGATACGGAATCTCGCC+TGG | 0.475637 | 7.3:-87756515 | None:intergenic |
| CCCTGATACGGAATCTCGCC+TGG | 0.475637 | 7.3:-87757004 | None:intergenic |
| GGACAACATCCAGAGTCTTA+TGG | 0.475815 | 7.3:+87756596 | MS.gene79599:CDS |
| GGACAACATCCAGAGTCTTA+TGG | 0.475815 | 7.3:+87756839 | MS.gene79599:CDS |
| TAAAGATAATTCAGAAGAAA+CGG | 0.480498 | 7.3:+87749817 | MS.gene79599:CDS |
| GGGGATAGATCTGGGATGCG+GGG | 0.482378 | 7.3:-87756252 | None:intergenic |
| GGCCTGCCATGTGATTGTGC+TGG | 0.483736 | 7.3:-87757034 | None:intergenic |
| TCATTTGGAACTTCACGTGC+AGG | 0.483750 | 7.3:-87751545 | None:intergenic |
| ATCAGGTGGTTTCAGCCAGC+AGG | 0.484565 | 7.3:+87755935 | MS.gene79599:CDS |
| CCAGAACCGTAACTGCTCCT+TGG | 0.490935 | 7.3:-87756122 | None:intergenic |
| AGTCCTTTCTTTAGAATCAT+CGG | 0.492156 | 7.3:-87752923 | None:intergenic |
| GTTGTGTCAGACCTGGATAT+AGG | 0.492547 | 7.3:-87749959 | None:intergenic |
| GCCCAGGCTTGAGGGTAGGT+TGG | 0.492941 | 7.3:-87756383 | None:intergenic |
| TAGCCTGTCAAGTCATCATC+AGG | 0.494848 | 7.3:+87755918 | MS.gene79599:intron |
| ATCCAACCTACCCTCAAGCC+TGG | 0.495983 | 7.3:+87756381 | MS.gene79599:CDS |
| CTCCAGCACAATCATATCTC+AGG | 0.497449 | 7.3:+87756909 | MS.gene79599:CDS |
| AGGGCGGCCCCTGCAAACTC+TGG | 0.497694 | 7.3:-87756163 | None:intergenic |
| GTATCTAACCTCTGCACTCA+TGG | 0.499696 | 7.3:-87751807 | None:intergenic |
| CGCCTGGTTGAGTGGCTCTA+GGG | 0.500281 | 7.3:-87756499 | None:intergenic |
| TGTTGAGGATAATTTCCATA+AGG | 0.501436 | 7.3:-87756092 | None:intergenic |
| GATCCCACAATAGCCTGAGC+AGG | 0.502943 | 7.3:-87752076 | None:intergenic |
| TCCAAGTTACTGGTGATAAG+AGG | 0.505553 | 7.3:+87752947 | MS.gene79599:CDS |
| TCTACTCCAGCACAATCATA+TGG | 0.505828 | 7.3:+87756539 | MS.gene79599:CDS |
| GCCTGGTTGAGTGGCTCTAG+GGG | 0.506058 | 7.3:-87756621 | None:intergenic |
| GCCTGGTTGAGTGGCTCTAG+GGG | 0.506058 | 7.3:-87756744 | None:intergenic |
| GCCTGGTTGAGTGGCTCTAG+GGG | 0.506058 | 7.3:-87756864 | None:intergenic |
| GCCTGGTTGAGTGGCTCTAG+GGG | 0.506058 | 7.3:-87756987 | None:intergenic |
| CTTATGGAGGGTAAAGGATA+AGG | 0.506258 | 7.3:-87756290 | None:intergenic |
| TTTGCTTGAGCCCAGGCTTG+AGG | 0.508013 | 7.3:-87756392 | None:intergenic |
| GGTTCTACTCCAGCACCATA+TGG | 0.508243 | 7.3:+87756782 | MS.gene79599:CDS |
| CCATGATACGGAATCTCGCC+TGG | 0.509473 | 7.3:-87756761 | None:intergenic |
| CCATGATACGGAATCTCGCC+TGG | 0.509473 | 7.3:-87756881 | None:intergenic |
| AGACAAGGCAGAAAAGCTAT+TGG | 0.511880 | 7.3:+87751781 | MS.gene79599:CDS |
| TGTACTCCAGCACAATCATA+TGG | 0.513671 | 7.3:+87756662 | MS.gene79599:CDS |
| ATGGCTCCAAGGAGCAGTTA+CGG | 0.518058 | 7.3:+87756116 | MS.gene79599:CDS |
| AACAATGGTGGCCTGCCATA+TGG | 0.518454 | 7.3:-87756797 | None:intergenic |
| TGTGGATGCTGCCCTTGTGA+AGG | 0.518910 | 7.3:-87756464 | None:intergenic |
| CCAGGCGAGATTCCGTATCA+TGG | 0.519439 | 7.3:+87756761 | MS.gene79599:CDS |
| CCAGGCGAGATTCCGTATCA+TGG | 0.519439 | 7.3:+87756881 | MS.gene79599:CDS |
| TGTGGTTGTTGTGTCAGACC+TGG | 0.519580 | 7.3:-87749966 | None:intergenic |
| CCATGATACGGAATCTCGCC+TGG | 0.519692 | 7.3:-87756638 | None:intergenic |
| CATATTACTATCAGCATCGC+TGG | 0.520981 | 7.3:+87756033 | MS.gene79599:CDS |
| TAACAGACATGATGAAAAGA+AGG | 0.521017 | 7.3:+87749745 | MS.gene79599:CDS |
| AGGCCTCGAGCTACAAGTGC+AGG | 0.522201 | 7.3:-87752049 | None:intergenic |
| GAAGTATCATGCTGAAAGGT+GGG | 0.522280 | 7.3:-87749920 | None:intergenic |
| CGGAATCTCGCCTGGTTGAG+TGG | 0.522392 | 7.3:-87756507 | None:intergenic |
| CGGAATCTCGCCTGGTTGAG+TGG | 0.522392 | 7.3:-87756630 | None:intergenic |
| CGGAATCTCGCCTGGTTGAG+TGG | 0.522392 | 7.3:-87756753 | None:intergenic |
| CGGAATCTCGCCTGGTTGAG+TGG | 0.522392 | 7.3:-87756873 | None:intergenic |
| CGGAATCTCGCCTGGTTGAG+TGG | 0.522392 | 7.3:-87756996 | None:intergenic |
| CACCCTAGAGCCACTCAACC+AGG | 0.523349 | 7.3:+87756497 | MS.gene79599:CDS |
| GATAAGGACCGGTACAGTGT+TGG | 0.525106 | 7.3:-87756274 | None:intergenic |
| GGATGTTGTCCTTGTGAAGG+TGG | 0.528344 | 7.3:-87756584 | None:intergenic |
| GGATGTTGTCCTTGTGAAGG+TGG | 0.528344 | 7.3:-87756707 | None:intergenic |
| GGATGTTGTCCTTGTGAAGG+TGG | 0.528344 | 7.3:-87756827 | None:intergenic |
| GGATGTTGTCCTTGTGAAGG+TGG | 0.528344 | 7.3:-87756950 | None:intergenic |
| CCACCTGATGATGACTTGAC+AGG | 0.529512 | 7.3:-87755921 | None:intergenic |
| GATGTACATACCTTATTGCT+AGG | 0.530908 | 7.3:-87750004 | None:intergenic |
| AGGCCTCACCAGAGTTTGCA+GGG | 0.531736 | 7.3:+87756155 | MS.gene79599:CDS |
| CAATAGCCTGAGCAGGGGAG+AGG | 0.532008 | 7.3:-87752069 | None:intergenic |
| TAGGTTGGATGTCCTCCATA+TGG | 0.532711 | 7.3:-87756368 | None:intergenic |
| GGTGGCCTGCCATATGGTGC+TGG | 0.532857 | 7.3:-87756791 | None:intergenic |
| ACGGTTCTGGTTGGGAGCAA+AGG | 0.533493 | 7.3:+87756135 | MS.gene79599:CDS |
| GACAAAAGCAACCTATATCC+AGG | 0.533532 | 7.3:+87749948 | MS.gene79599:CDS |
| GGATGCTGCCCTTGTGAAGG+TGG | 0.534828 | 7.3:-87756461 | None:intergenic |
| TAATTAATCTGAACAGGGGA+TGG | 0.535256 | 7.3:-87756314 | None:intergenic |
| CCAGGCGAGATTCCGTATCA+TGG | 0.541393 | 7.3:+87756638 | MS.gene79599:CDS |
| TTGAGCCCAGGCTTGAGGGT+AGG | 0.542149 | 7.3:-87756387 | None:intergenic |
| CTACTCCAGCACCATATGGC+AGG | 0.542173 | 7.3:+87756786 | MS.gene79599:CDS |
| AGGAACCTCAATTTCTTGTG+TGG | 0.543235 | 7.3:-87749984 | None:intergenic |
| CTCCATATGGATATTGTGCA+GGG | 0.544808 | 7.3:-87756355 | None:intergenic |
| GGCCTGCCATATGATTGTGC+TGG | 0.545310 | 7.3:-87756545 | None:intergenic |
| GGCCTGCCATATGATTGTGC+TGG | 0.545310 | 7.3:-87756668 | None:intergenic |
| AAGCCGATGATTCTAAAGAA+AGG | 0.546417 | 7.3:+87752920 | MS.gene79599:intron |
| CTCCAGCACAATCATATGGC+AGG | 0.546666 | 7.3:+87756666 | MS.gene79599:CDS |
| CTCCAGCACAATCATATGGC+AGG | 0.547509 | 7.3:+87756543 | MS.gene79599:CDS |
| AGATCCTTGTGGCGGACGGT+AGG | 0.547916 | 7.3:-87755958 | None:intergenic |
| TGCATATGATTGATTATGAG+AGG | 0.551522 | 7.3:-87756063 | None:intergenic |
| AACAACCACACAAGAAATTG+AGG | 0.552466 | 7.3:+87749979 | MS.gene79599:CDS |
| GGCTTTCCATACTGCTGTGG+AGG | 0.552499 | 7.3:-87756422 | None:intergenic |
| TAAGGACCGGTACAGTGTTG+GGG | 0.552946 | 7.3:-87756272 | None:intergenic |
| TTCACAAGGGCAGCATCCAC+AGG | 0.553792 | 7.3:+87756466 | MS.gene79599:CDS |
| GTATCTAACCTCTGTGAACA+TGG | 0.556597 | 7.3:-87751432 | None:intergenic |
| AGAAGTATCATGCTGAAAGG+TGG | 0.557514 | 7.3:-87749921 | None:intergenic |
| GGAGCAGTTACGGTTCTGGT+TGG | 0.559653 | 7.3:+87756126 | MS.gene79599:CDS |
| CCTGGTTGAGTGGCTCTAGG+GGG | 0.559737 | 7.3:-87756743 | None:intergenic |
| CAGGCCTACCGTCCGCCACA+AGG | 0.560264 | 7.3:+87755954 | MS.gene79599:CDS |
| TCTGGATGTTGTCCTTGTGA+AGG | 0.560326 | 7.3:-87756953 | None:intergenic |
| TCCAACCTACCCTCAAGCCT+GGG | 0.561080 | 7.3:+87756382 | MS.gene79599:CDS |
| CCTGGTTGAGTGGCTCTAGG+GGG | 0.564374 | 7.3:-87756620 | None:intergenic |
| CCTGGTTGAGTGGCTCTAGG+GGG | 0.564374 | 7.3:-87756863 | None:intergenic |
| CCTGGTTGAGTGGCTCTAGG+GGG | 0.564374 | 7.3:-87756986 | None:intergenic |
| GGCCTGAGATATGATTGTGC+TGG | 0.566446 | 7.3:-87756911 | None:intergenic |
| CTCCAGCACAATCACATGGC+AGG | 0.569765 | 7.3:+87757032 | MS.gene79599:CDS |
| GGATGTTGTCCTTGTGAAGG+TGG | 0.573281 | 7.3:-87757073 | None:intergenic |
| CTCCTTGGAGCCATATGTTG+AGG | 0.573692 | 7.3:-87756107 | None:intergenic |
| AAAGGTGGGATCATTCGAGC+TGG | 0.574288 | 7.3:-87749906 | None:intergenic |
| GGACAACATCCAGAGTCCTA+TGG | 0.576552 | 7.3:+87756962 | MS.gene79599:CDS |
| AGAATCTCTTTGGTATTGGT+AGG | 0.579162 | 7.3:-87749845 | None:intergenic |
| CTGGTTGAGTGGCTCTAGGG+GGG | 0.579347 | 7.3:-87756742 | None:intergenic |
| GAGGCAAATTGAAATTGCAC+AGG | 0.580541 | 7.3:+87752966 | MS.gene79599:CDS |
| GGCCCCTGCAAACTCTGGTG+AGG | 0.583174 | 7.3:-87756158 | None:intergenic |
| ATGATCATTATGGTGGACAA+AGG | 0.586741 | 7.3:+87756201 | MS.gene79599:CDS |
| GGATAATTTCCATAAGGAGT+AGG | 0.588588 | 7.3:-87756086 | None:intergenic |
| TCTGGATGTTGTCCTTGTGA+AGG | 0.589660 | 7.3:-87756587 | None:intergenic |
| TCTGGATGTTGTCCTTGTGA+AGG | 0.589660 | 7.3:-87756710 | None:intergenic |
| TCTGGATGTTGTCCTTGTGA+AGG | 0.589660 | 7.3:-87756830 | None:intergenic |
| GATGGACTTATGGAGGGTAA+AGG | 0.592593 | 7.3:-87756296 | None:intergenic |
| CACCAGATCCTTGTGGCGGA+CGG | 0.592623 | 7.3:-87755962 | None:intergenic |
| ATCCCACAATAGCCTGAGCA+GGG | 0.592936 | 7.3:-87752075 | None:intergenic |
| AACAGGGGATGGACTTATGG+AGG | 0.593055 | 7.3:-87756303 | None:intergenic |
| CTGGTTGAGTGGCTCTAGGG+GGG | 0.596393 | 7.3:-87756619 | None:intergenic |
| CTGGTTGAGTGGCTCTAGGG+GGG | 0.596393 | 7.3:-87756862 | None:intergenic |
| CTGGTTGAGTGGCTCTAGGG+GGG | 0.596393 | 7.3:-87756985 | None:intergenic |
| GAACTTGCGCTTACAATCAG+AGG | 0.601991 | 7.3:-87749160 | None:intergenic |
| ATCCTCAACATATGGCTCCA+AGG | 0.603445 | 7.3:+87756105 | MS.gene79599:CDS |
| GGTGGCTTTCCATACTGCTG+TGG | 0.604041 | 7.3:-87756425 | None:intergenic |
| TACCAAAGAGATTCTCGTTG+AGG | 0.605338 | 7.3:+87749853 | MS.gene79599:CDS |
| AGTCAAACAAACCTGACTCA+AGG | 0.609370 | 7.3:-87753004 | None:intergenic |
| CCAGGCGAGATTCCGTATCA+GGG | 0.609811 | 7.3:+87756515 | MS.gene79599:CDS |
| CCAGGCGAGATTCCGTATCA+GGG | 0.609811 | 7.3:+87757004 | MS.gene79599:CDS |
| TTTGGCATGCCACCTTCACA+AGG | 0.611493 | 7.3:+87756575 | MS.gene79599:CDS |
| TTTGGCATGCCACCTTCACA+AGG | 0.611493 | 7.3:+87756698 | MS.gene79599:CDS |
| TTTGGCATGCCACCTTCACA+AGG | 0.611493 | 7.3:+87756818 | MS.gene79599:CDS |
| TTTGGCATGCCACCTTCACA+AGG | 0.611493 | 7.3:+87756941 | MS.gene79599:CDS |
| CCACCACTATGGGGTCAGCA+AGG | 0.612728 | 7.3:+87755987 | MS.gene79599:CDS |
| TATGGCGTGCCACCTTCACA+AGG | 0.616928 | 7.3:+87756452 | MS.gene79599:CDS |
| CGATGCTGATAGTAATATGA+TGG | 0.617010 | 7.3:-87756029 | None:intergenic |
| TAACCCCTGTTGTGTGAGGG+CGG | 0.617324 | 7.3:-87756179 | None:intergenic |
| CTGGTTGAGTGGCTCTAGGG+TGG | 0.617348 | 7.3:-87756496 | None:intergenic |
| AAGGACCGGTACAGTGTTGG+GGG | 0.617380 | 7.3:-87756271 | None:intergenic |
| AGAAGAAGTATCATGCTGAA+AGG | 0.621992 | 7.3:-87749924 | None:intergenic |
| GGGGCCGCCCTCACACAACA+GGG | 0.626489 | 7.3:+87756175 | MS.gene79599:CDS |
| GGAGGGTAAAGGATAAGGAC+CGG | 0.627635 | 7.3:-87756285 | None:intergenic |
| AGGGGTTATGATCATTATGG+TGG | 0.627740 | 7.3:+87756194 | MS.gene79599:CDS |
| TGCTGATAGTAATATGATGG+TGG | 0.628397 | 7.3:-87756026 | None:intergenic |
| GAAGATCAACACTCTGATGA+CGG | 0.628431 | 7.3:+87749183 | MS.gene79599:CDS |
| ACGTGAAGTTCCAAATGAGA+AGG | 0.630318 | 7.3:+87751550 | MS.gene79599:CDS |
| GCTGGAGTAGAACCCTGATA+CGG | 0.630359 | 7.3:-87756527 | None:intergenic |
| GCTGGAGTAGAACCCTGATA+CGG | 0.630359 | 7.3:-87757016 | None:intergenic |
| AATTGTAATTAATCTGAACA+GGG | 0.630538 | 7.3:-87756319 | None:intergenic |
| CCATATGGATATTGTGCAGG+GGG | 0.630768 | 7.3:-87756353 | None:intergenic |
| GATGATAACCAGAATTACCT+AGG | 0.632946 | 7.3:+87749231 | MS.gene79599:CDS |
| AACTTGCGCTTACAATCAGA+GGG | 0.633621 | 7.3:-87749159 | None:intergenic |
| GCTGGAGTAGAACCATGATA+CGG | 0.633938 | 7.3:-87756773 | None:intergenic |
| AAAGAAGGTTGCTGAGCCAG+AGG | 0.634204 | 7.3:+87749760 | MS.gene79599:CDS |
| GCATATGATTGATTATGAGA+GGG | 0.634444 | 7.3:-87756062 | None:intergenic |
| CTGGTTGAGTGGCTCTAGGG+TGG | 0.634984 | 7.3:-87757109 | None:intergenic |
| GAACCTTGCTGACCCCATAG+TGG | 0.636422 | 7.3:-87755990 | None:intergenic |
| CGTCCGCCACAAGGATCTGG+TGG | 0.637608 | 7.3:+87755963 | MS.gene79599:CDS |
| GCTGGAGTACAACCATGATA+CGG | 0.638390 | 7.3:-87756650 | None:intergenic |
| ATTCCACAGGCTGATGCTGG+AGG | 0.639608 | 7.3:+87752022 | MS.gene79599:intron |
| GATCATTATGGTGGACAAAG+GGG | 0.641676 | 7.3:+87756203 | MS.gene79599:CDS |
| GGTGGCACGCCATACAATGG+TGG | 0.642515 | 7.3:-87757055 | None:intergenic |
| TCTCCTGCACTTGTAGCTCG+AGG | 0.645902 | 7.3:+87752046 | MS.gene79599:CDS |
| ATCATAACCCCTGTTGTGTG+AGG | 0.648263 | 7.3:-87756183 | None:intergenic |
| GCTGGAGTAGAACCATGATA+CGG | 0.649951 | 7.3:-87756893 | None:intergenic |
| AGAGGAAAATGCTCGTTCGG+AGG | 0.655802 | 7.3:+87749778 | MS.gene79599:CDS |
| GGACCACCAGATCCTTGTGG+CGG | 0.656693 | 7.3:-87755966 | None:intergenic |
| TGGTTATCATCGTCAAGACA+AGG | 0.656873 | 7.3:-87749219 | None:intergenic |
| GGTGGCACGCCATACAATGG+TGG | 0.659754 | 7.3:-87756443 | None:intergenic |
| TATGGCGTGCCACCTTCACA+AGG | 0.660463 | 7.3:+87757064 | MS.gene79599:CDS |
| CTAGGGTGGACATAAGCCTG+TGG | 0.661544 | 7.3:-87756482 | None:intergenic |
| GACAACATCCAGTCTTATGG+CGG | 0.662824 | 7.3:+87757086 | MS.gene79599:CDS |
| AATTGCACAGGAAATGACAA+AGG | 0.663160 | 7.3:+87752978 | MS.gene79599:CDS |
| TCCCACAATAGCCTGAGCAG+GGG | 0.667257 | 7.3:-87752074 | None:intergenic |
| GGCCTCACCAGAGTTTGCAG+GGG | 0.668815 | 7.3:+87756156 | MS.gene79599:CDS |
| TCATAACCCCTGTTGTGTGA+GGG | 0.668905 | 7.3:-87756182 | None:intergenic |
| TCCATATGGATATTGTGCAG+GGG | 0.669519 | 7.3:-87756354 | None:intergenic |
| ACTGGATGTTGTCCTTGTGA+AGG | 0.675212 | 7.3:-87757076 | None:intergenic |
| CCTGCACAATATCCATATGG+AGG | 0.675215 | 7.3:+87756356 | MS.gene79599:CDS |
| GCTGATAGTAATATGATGGT+GGG | 0.679017 | 7.3:-87756025 | None:intergenic |
| ATTGTAATTAATCTGAACAG+GGG | 0.679692 | 7.3:-87756318 | None:intergenic |
| TCTACTCCAGCACAATCACA+TGG | 0.682255 | 7.3:+87757028 | MS.gene79599:CDS |
| CCTTGCTGACCCCATAGTGG+TGG | 0.683281 | 7.3:-87755987 | None:intergenic |
| ATTGGATGCCATGAGTGCAG+AGG | 0.684700 | 7.3:+87751799 | MS.gene79599:CDS |
| CCTGTCAAGTCATCATCAGG+TGG | 0.685141 | 7.3:+87755921 | MS.gene79599:CDS |
| GGGCCGCCCTCACACAACAG+GGG | 0.685494 | 7.3:+87756176 | MS.gene79599:CDS |
| GAAGGTGGCACGCCATACAA+TGG | 0.687612 | 7.3:-87756446 | None:intergenic |
| GAAGGTGGCACGCCATACAA+TGG | 0.687612 | 7.3:-87757058 | None:intergenic |
| GGTGGACCACCAGATCCTTG+TGG | 0.688140 | 7.3:-87755969 | None:intergenic |
| TCTGGTGGTCCACCACTATG+GGG | 0.696904 | 7.3:+87755978 | MS.gene79599:CDS |
| GGTGGCATGCCAAACAATGG+TGG | 0.699630 | 7.3:-87756566 | None:intergenic |
| GGTGGCATGCCAAACAATGG+TGG | 0.699630 | 7.3:-87756689 | None:intergenic |
| GGTGGCATGCCAAACAATGG+TGG | 0.699630 | 7.3:-87756809 | None:intergenic |
| GGTGGCATGCCAAACAATGG+TGG | 0.699630 | 7.3:-87756932 | None:intergenic |
| ACAGGGGATGGACTTATGGA+GGG | 0.703309 | 7.3:-87756302 | None:intergenic |
| GAAGGTGGCATGCCAAACAA+TGG | 0.715515 | 7.3:-87756569 | None:intergenic |
| GAAGGTGGCATGCCAAACAA+TGG | 0.715515 | 7.3:-87756692 | None:intergenic |
| GAAGGTGGCATGCCAAACAA+TGG | 0.715515 | 7.3:-87756812 | None:intergenic |
| GAAGGTGGCATGCCAAACAA+TGG | 0.715515 | 7.3:-87756935 | None:intergenic |
| GATAGTAATATGATGGTGGG+TGG | 0.723828 | 7.3:-87756022 | None:intergenic |
| ATGGCGTGCCACCTTCACAA+GGG | 0.726964 | 7.3:+87756453 | MS.gene79599:CDS |
| AATGGATGCCATGTTCACAG+AGG | 0.777271 | 7.3:+87751424 | MS.gene79599:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 87749120 | 87757117 | 87749120 | ID=MS.gene79599 |
| chr7.3 | mRNA | 87749120 | 87757117 | 87749120 | ID=MS.gene79599.t1;Parent=MS.gene79599 |
| chr7.3 | exon | 87749120 | 87749252 | 87749120 | ID=MS.gene79599.t1.exon1;Parent=MS.gene79599.t1 |
| chr7.3 | CDS | 87749120 | 87749252 | 87749120 | ID=cds.MS.gene79599.t1;Parent=MS.gene79599.t1 |
| chr7.3 | exon | 87749738 | 87750015 | 87749738 | ID=MS.gene79599.t1.exon2;Parent=MS.gene79599.t1 |
| chr7.3 | CDS | 87749738 | 87750015 | 87749738 | ID=cds.MS.gene79599.t1;Parent=MS.gene79599.t1 |
| chr7.3 | exon | 87751374 | 87751445 | 87751374 | ID=MS.gene79599.t1.exon3;Parent=MS.gene79599.t1 |
| chr7.3 | CDS | 87751374 | 87751445 | 87751374 | ID=cds.MS.gene79599.t1;Parent=MS.gene79599.t1 |
| chr7.3 | exon | 87751527 | 87751571 | 87751527 | ID=MS.gene79599.t1.exon4;Parent=MS.gene79599.t1 |
| chr7.3 | CDS | 87751527 | 87751571 | 87751527 | ID=cds.MS.gene79599.t1;Parent=MS.gene79599.t1 |
| chr7.3 | exon | 87751749 | 87751820 | 87751749 | ID=MS.gene79599.t1.exon5;Parent=MS.gene79599.t1 |
| chr7.3 | CDS | 87751749 | 87751820 | 87751749 | ID=cds.MS.gene79599.t1;Parent=MS.gene79599.t1 |
| chr7.3 | exon | 87752031 | 87752132 | 87752031 | ID=MS.gene79599.t1.exon6;Parent=MS.gene79599.t1 |
| chr7.3 | CDS | 87752031 | 87752132 | 87752031 | ID=cds.MS.gene79599.t1;Parent=MS.gene79599.t1 |
| chr7.3 | exon | 87752221 | 87752242 | 87752221 | ID=MS.gene79599.t1.exon7;Parent=MS.gene79599.t1 |
| chr7.3 | CDS | 87752221 | 87752242 | 87752221 | ID=cds.MS.gene79599.t1;Parent=MS.gene79599.t1 |
| chr7.3 | exon | 87752923 | 87753014 | 87752923 | ID=MS.gene79599.t1.exon8;Parent=MS.gene79599.t1 |
| chr7.3 | CDS | 87752923 | 87753014 | 87752923 | ID=cds.MS.gene79599.t1;Parent=MS.gene79599.t1 |
| chr7.3 | exon | 87755921 | 87757117 | 87755921 | ID=MS.gene79599.t1.exon9;Parent=MS.gene79599.t1 |
| chr7.3 | CDS | 87755921 | 87757117 | 87755921 | ID=cds.MS.gene79599.t1;Parent=MS.gene79599.t1 |
| Gene Sequence |
| Protein sequence |
