Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene21710.t1 | XP_003610912.2 | 94.2 | 788 | 38 | 1 | 1 | 788 | 1 | 780 | 1.70E-216 | 762.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene21710.t1 | Q80WA4 | 34.1 | 173 | 108 | 3 | 199 | 368 | 55 | 224 | 1.0e-15 | 87.0 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene21710.t1 | G7K7W5 | 94.2 | 788 | 38 | 1 | 1 | 788 | 1 | 780 | 1.2e-216 | 762.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049983 | MS.gene21710 | -0.806863 | 6.69E-50 | -1.69E-46 |
MS.gene050237 | MS.gene21710 | -0.810985 | 8.78E-51 | -1.69E-46 |
MS.gene050384 | MS.gene21710 | -0.819358 | 1.21E-52 | -1.69E-46 |
MS.gene050386 | MS.gene21710 | -0.822107 | 2.83E-53 | -1.69E-46 |
MS.gene050826 | MS.gene21710 | -0.807306 | 5.39E-50 | -1.69E-46 |
MS.gene051316 | MS.gene21710 | 0.817229 | 3.67E-52 | -1.69E-46 |
MS.gene051631 | MS.gene21710 | 0.812841 | 3.46E-51 | -1.69E-46 |
MS.gene052242 | MS.gene21710 | 0.806902 | 6.56E-50 | -1.69E-46 |
MS.gene056776 | MS.gene21710 | -0.805318 | 1.41E-49 | -1.69E-46 |
MS.gene056779 | MS.gene21710 | -0.807462 | 5.00E-50 | -1.69E-46 |
MS.gene05761 | MS.gene21710 | -0.8205 | 6.64E-53 | -1.69E-46 |
MS.gene060634 | MS.gene21710 | 0.8022 | 6.28E-49 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene21656 | MS.gene21710 | PPI |
MS.gene04307 | MS.gene21710 | PPI |
MS.gene21710 | MS.gene22316 | PPI |
MS.gene94960 | MS.gene21710 | PPI |
MS.gene21710 | MS.gene53118 | PPI |
MS.gene21710 | MS.gene78555 | PPI |
MS.gene85900 | MS.gene21710 | PPI |
MS.gene04185 | MS.gene21710 | PPI |
MS.gene024674 | MS.gene21710 | PPI |
MS.gene072735 | MS.gene21710 | PPI |
MS.gene05659 | MS.gene21710 | PPI |
MS.gene55323 | MS.gene21710 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene21710.t1 | MTR_5g008420 | 96.447 | 788 | 20 | 1 | 1 | 788 | 1 | 780 | 0.0 | 1488 |
MS.gene21710.t1 | MTR_7g010340 | 57.670 | 678 | 133 | 17 | 1 | 669 | 1 | 533 | 0.0 | 629 |
MS.gene21710.t1 | MTR_7g010340 | 56.047 | 678 | 128 | 17 | 1 | 669 | 1 | 517 | 0.0 | 601 |
MS.gene21710.t1 | MTR_3g104280 | 41.843 | 521 | 231 | 25 | 193 | 674 | 86 | 573 | 9.17e-68 | 236 |
MS.gene21710.t1 | MTR_3g104270 | 41.211 | 512 | 228 | 22 | 193 | 665 | 86 | 563 | 2.37e-66 | 232 |
MS.gene21710.t1 | MTR_1g016760 | 47.273 | 275 | 117 | 9 | 193 | 459 | 112 | 366 | 3.62e-62 | 221 |
MS.gene21710.t1 | MTR_7g010360 | 45.511 | 323 | 66 | 12 | 1 | 300 | 1 | 236 | 1.51e-45 | 175 |
MS.gene21710.t1 | MTR_6g012630 | 27.174 | 184 | 115 | 7 | 187 | 360 | 42 | 216 | 4.32e-11 | 66.6 |
MS.gene21710.t1 | MTR_6g012630 | 27.174 | 184 | 115 | 7 | 187 | 360 | 42 | 216 | 5.95e-11 | 66.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene21710.t1 | AT1G33680 | 42.212 | 841 | 324 | 33 | 1 | 758 | 1 | 762 | 1.12e-145 | 446 |
MS.gene21710.t1 | AT4G10070 | 44.300 | 693 | 293 | 32 | 1 | 662 | 1 | 631 | 3.03e-134 | 414 |
MS.gene21710.t1 | AT2G25970 | 47.479 | 238 | 123 | 2 | 193 | 429 | 134 | 370 | 6.99e-54 | 197 |
MS.gene21710.t1 | AT5G50940 | 43.836 | 73 | 40 | 1 | 193 | 265 | 189 | 260 | 4.87e-12 | 67.8 |
Find 293 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GGCACCTGGTTGCCCATAAC+TGG | 0.089662 | 5.2:+2377739 | None:intergenic |
TATGACTCGACCCAAGTTTA+TGG | 0.191316 | 5.2:-2377389 | MS.gene21710:CDS |
TTGTTAACGGCTGGTTGTTC+AGG | 0.239682 | 5.2:+2377644 | None:intergenic |
GTTCAGGTTGGCGTACTTAT+TGG | 0.253689 | 5.2:-2382513 | MS.gene21710:intron |
CAGTTTATCACCTTCTCATT+TGG | 0.256871 | 5.2:+2382138 | None:intergenic |
ACCAGGCGAGATTCCGTATC+AGG | 0.257233 | 5.2:-2377930 | MS.gene21710:CDS |
TGCTCAGTTGACTCCATTGA+TGG | 0.270905 | 5.2:+2385198 | None:intergenic |
AAGAGCCTGCAGACCAAAAC+TGG | 0.283772 | 5.2:-2382003 | MS.gene21710:CDS |
GGCTGTTCAGTTGCTTTAGA+TGG | 0.289174 | 5.2:+2385219 | None:intergenic |
CAGCCTCAGGGTCAGGATTA+TGG | 0.301261 | 5.2:-2378208 | MS.gene21710:CDS |
CTGGATGCGTGCCCCAGTTT+TGG | 0.305898 | 5.2:+2381990 | None:intergenic |
TCATATGCACCTCCTCCTTA+TGG | 0.307453 | 5.2:-2378478 | MS.gene21710:CDS |
ACTGAGCAAGACGCTTCTTC+TGG | 0.308215 | 5.2:-2385183 | MS.gene21710:CDS |
AAACTTGGGTCGAGTCATAT+TGG | 0.314651 | 5.2:+2377393 | None:intergenic |
ATCTGGTGGTCCACCCCAAT+GGG | 0.316449 | 5.2:-2378578 | MS.gene21710:CDS |
GAAAGGACTGTCCAAGTTAC+TGG | 0.320619 | 5.2:-2381042 | MS.gene21710:CDS |
CACTGTTGTAAGCAGGATCC+TGG | 0.326871 | 5.2:+2377597 | None:intergenic |
CCTGGTGGACAGCCCAGTTA+TGG | 0.329458 | 5.2:-2377752 | MS.gene21710:CDS |
TCCTTTCGAAAATGCTCCTT+TGG | 0.330000 | 5.2:-2385385 | MS.gene21710:CDS |
CCAAGGAGCAGTTACGGTTC+TGG | 0.331193 | 5.2:-2378433 | MS.gene21710:CDS |
GGCGTACTTATTGGCAAATC+TGG | 0.332530 | 5.2:-2382504 | MS.gene21710:CDS |
GCTCAGATGAATTACAATTA+TGG | 0.338699 | 5.2:-2378232 | MS.gene21710:CDS |
AGAAGGACCGGTACCATGTT+GGG | 0.340479 | 5.2:+2378282 | None:intergenic |
GCAAATCTGGTGACACTATA+CGG | 0.340935 | 5.2:-2382491 | MS.gene21710:CDS |
ACAAGGCCCGTTGAACTAAT+AGG | 0.346892 | 5.2:-2382399 | MS.gene21710:CDS |
CGCTTACAATCAGAAGAAAC+AGG | 0.347578 | 5.2:+2386485 | None:intergenic |
TTCTTTAGAATCATCGCCTT+CGG | 0.348747 | 5.2:+2381062 | None:intergenic |
ACGGTACCTGCAGTATAATT+CGG | 0.353164 | 5.2:-2382472 | MS.gene21710:CDS |
TCCTTCTCCTTTACCCTCCA+TGG | 0.353311 | 5.2:-2378266 | MS.gene21710:CDS |
GGGTAAGCTGGCTGAGGATT+TGG | 0.356446 | 5.2:+2378073 | None:intergenic |
GGTCAGCGAGGTTCACATTA+TGG | 0.357233 | 5.2:-2378556 | MS.gene21710:CDS |
ATGTCGTACCTAGGTCATTC+TGG | 0.361703 | 5.2:+2386345 | None:intergenic |
CCATATCCATATGCATCATC+TGG | 0.361945 | 5.2:-2377869 | MS.gene21710:CDS |
AGGTCATCATCAGGTGGTTT+TGG | 0.368182 | 5.2:-2378628 | MS.gene21710:CDS |
TTACAGAATGACACTTCTTC+AGG | 0.372488 | 5.2:-2385123 | MS.gene21710:CDS |
CAGGGGCCACCCTCACATAA+TGG | 0.372854 | 5.2:-2378382 | MS.gene21710:CDS |
ATGCAGGTCGGGTTAATCAT+TGG | 0.377319 | 5.2:-2382045 | MS.gene21710:intron |
GCAGGAGCACCGGCTGCTGC+TGG | 0.382386 | 5.2:+2377458 | None:intergenic |
GGGGACTGAACTGGGATGCT+GGG | 0.385001 | 5.2:+2378303 | None:intergenic |
GCTGCATAGCCTGCTGGTTG+AGG | 0.385429 | 5.2:+2377485 | None:intergenic |
CCAGATGATGCATATGGATA+TGG | 0.385841 | 5.2:+2377869 | None:intergenic |
CTTTGCTGGAATAGCCTATC+AGG | 0.389163 | 5.2:-2378648 | MS.gene21710:intron |
GCGCATAACTAGCTGTGGCC+TGG | 0.391139 | 5.2:+2377717 | None:intergenic |
GTTGTTCAGGGTAAGTCTGC+TGG | 0.392931 | 5.2:+2377657 | None:intergenic |
CAAGCAGCATATCCTACATA+TGG | 0.393896 | 5.2:-2377839 | MS.gene21710:CDS |
AATGGTGGATATGATTATTA+TGG | 0.394577 | 5.2:-2378364 | MS.gene21710:CDS |
TGCAGGTCGGGTTAATCATT+GGG | 0.396077 | 5.2:-2382044 | MS.gene21710:intron |
AATCGAGGTTCCTAGCAATA+AGG | 0.397890 | 5.2:-2385058 | MS.gene21710:intron |
CGCATAACTAGCTGTGGCCT+GGG | 0.398000 | 5.2:+2377718 | None:intergenic |
GTGTTGGCAGCTAATACTAA+TGG | 0.398131 | 5.2:-2385459 | MS.gene21710:intron |
TCCTTTGGAAAATGCTCCTT+CGG | 0.400218 | 5.2:-2385370 | MS.gene21710:CDS |
CCATAACTGGGCTGTCCACC+AGG | 0.401150 | 5.2:+2377752 | None:intergenic |
TCCTTACCAGAGTCCTCAAC+AGG | 0.405365 | 5.2:+2385255 | None:intergenic |
CTAGCTGTGGCCTGGGCACC+TGG | 0.405662 | 5.2:+2377725 | None:intergenic |
CTGGTGGACAGCCCAGTTAT+GGG | 0.408280 | 5.2:-2377751 | MS.gene21710:CDS |
TACCGTCCGCCACGAGGATC+TGG | 0.408928 | 5.2:-2378595 | MS.gene21710:CDS |
TCTTTAGAATCATCGCCTTC+GGG | 0.410748 | 5.2:+2381063 | None:intergenic |
ATCGAGGAGCACCATAAACT+TGG | 0.411128 | 5.2:+2377378 | None:intergenic |
AACTGGGCTGTCCACCAGGC+TGG | 0.412125 | 5.2:+2377756 | None:intergenic |
TCGCTTGAGCACTGGCTTGA+GGG | 0.412219 | 5.2:+2378053 | None:intergenic |
CTGCTGGTTGAGGGTTAGAT+TGG | 0.412622 | 5.2:+2377495 | None:intergenic |
GGGTTAATCATTGGGAAAGG+TGG | 0.413875 | 5.2:-2382036 | MS.gene21710:CDS |
TGAACCTCGCTGACCCCATT+GGG | 0.416626 | 5.2:+2378564 | None:intergenic |
TCGCCTGGTTGAGTGGCTCT+AGG | 0.418678 | 5.2:+2377944 | None:intergenic |
CGTTGAACTAATAGGAACTT+TGG | 0.421875 | 5.2:-2382391 | MS.gene21710:CDS |
GCCTCTTATCACCAGTAACT+TGG | 0.424651 | 5.2:+2381031 | None:intergenic |
CAACCCACACCAACTCAAAC+TGG | 0.425178 | 5.2:-2377524 | MS.gene21710:CDS |
CAAGTTGGTCCTACTGGTTA+TGG | 0.425563 | 5.2:-2377695 | MS.gene21710:CDS |
AACTTGGGTCGAGTCATATT+GGG | 0.425755 | 5.2:+2377394 | None:intergenic |
TAATTGTAATTCATCTGAGC+TGG | 0.428502 | 5.2:+2378235 | None:intergenic |
TATGCACCTCCCCAGCAGTA+TGG | 0.428958 | 5.2:-2378028 | MS.gene21710:CDS |
CGGTACCTGCAGTATAATTC+GGG | 0.432942 | 5.2:-2382471 | MS.gene21710:CDS |
TTACAATTATGGACAGCCTC+AGG | 0.433579 | 5.2:-2378221 | MS.gene21710:CDS |
GGATGTCCTGCCTGCTGATA+AGG | 0.436143 | 5.2:+2378175 | None:intergenic |
CATCAGCATCTCTAGTGATC+TGG | 0.437549 | 5.2:+2382439 | None:intergenic |
GGACAACATCCACAGTCTTA+TGG | 0.440152 | 5.2:-2377971 | MS.gene21710:CDS |
AAAGTTCCTATTAGTTCAAC+GGG | 0.441107 | 5.2:+2382393 | None:intergenic |
TACACCGTCAGTGTTGGATT+CGG | 0.445096 | 5.2:+2386433 | None:intergenic |
ATCTCTTTGACATCCTCAAC+GGG | 0.445474 | 5.2:+2385279 | None:intergenic |
GATTGATTATGAGAAGGATA+TGG | 0.449530 | 5.2:+2378499 | None:intergenic |
TATGCGCAAGTTGGTCCTAC+TGG | 0.450191 | 5.2:-2377701 | MS.gene21710:CDS |
GGTACAGCTGCATAGCCTGC+TGG | 0.451375 | 5.2:+2377479 | None:intergenic |
GAAATTCCACAGGCTGATGC+TGG | 0.452709 | 5.2:-2382240 | MS.gene21710:intron |
GGGTCAATAGAGCTGGAATC+AGG | 0.454268 | 5.2:+2385150 | None:intergenic |
CAAAACTGGGGCACGCATCC+AGG | 0.456019 | 5.2:-2381989 | MS.gene21710:intron |
TGCATAATTCGCTTGAGCAC+TGG | 0.456659 | 5.2:+2378045 | None:intergenic |
TATGGCAAGCCACCGTTGTA+TGG | 0.457045 | 5.2:-2378010 | MS.gene21710:CDS |
GTGGCGGACGGTAGGCCTGC+TGG | 0.458635 | 5.2:+2378605 | None:intergenic |
ACCGTCAGTGTTGGATTCGG+TGG | 0.459315 | 5.2:+2386436 | None:intergenic |
ACGGTGGCTTGCCATACTGC+TGG | 0.460842 | 5.2:+2378017 | None:intergenic |
GCCATAACCTGCGTTGTTAA+CGG | 0.461087 | 5.2:+2377631 | None:intergenic |
CCCGCAGTCTGCACCTGGAC+AGG | 0.461205 | 5.2:-2377786 | MS.gene21710:CDS |
CTCCCCTGCTCAGGCTATCG+TGG | 0.463470 | 5.2:-2382187 | MS.gene21710:CDS |
CTGCATAGCCTGCTGGTTGA+GGG | 0.464272 | 5.2:+2377486 | None:intergenic |
GAGCAGTTACGGTTCTGGTT+GGG | 0.467510 | 5.2:-2378428 | MS.gene21710:CDS |
TCGAGGCCTCTCCCCTGCTC+AGG | 0.468246 | 5.2:-2382196 | MS.gene21710:CDS |
GGACATCCTCAACAAGGTTA+TGG | 0.468279 | 5.2:-2378160 | MS.gene21710:CDS |
TGGAAATTATCCTCAACATA+TGG | 0.468726 | 5.2:-2378458 | MS.gene21710:CDS |
GCCGGTGCTCCTGCAGCATA+CGG | 0.469173 | 5.2:-2377449 | MS.gene21710:CDS |
ATCCTCAACGGGAATCTCAT+TGG | 0.470692 | 5.2:+2385290 | None:intergenic |
GCCGTTAACAACGCAGGTTA+TGG | 0.472613 | 5.2:-2377632 | MS.gene21710:CDS |
GGCTGGGCATAAACCTGTCC+AGG | 0.472801 | 5.2:+2377773 | None:intergenic |
CCACCTGATGATGACCTGAT+AGG | 0.474279 | 5.2:+2378634 | None:intergenic |
TGTTAACGGCTGGTTGTTCA+GGG | 0.474789 | 5.2:+2377645 | None:intergenic |
CCCTGATACGGAATCTCGCC+TGG | 0.475637 | 5.2:+2377929 | None:intergenic |
CGGTGGCTTGCCATACTGCT+GGG | 0.476941 | 5.2:+2378018 | None:intergenic |
CCTCCATATGGATATTGTGC+AGG | 0.477000 | 5.2:+2378100 | None:intergenic |
AAGCAGGATCCTGGGGTGCT+TGG | 0.479506 | 5.2:+2377606 | None:intergenic |
TTATGGACAGCCTCAGGGTC+AGG | 0.481108 | 5.2:-2378215 | MS.gene21710:CDS |
GGTAAGTCTGCTGGGAAGAC+GGG | 0.482908 | 5.2:+2377666 | None:intergenic |
GGATTTGGATGTCCTCCATA+TGG | 0.484661 | 5.2:+2378088 | None:intergenic |
ACATAACCTGGCTGCACAGT+TGG | 0.486266 | 5.2:+2377548 | None:intergenic |
ACTGTTGTAAGCAGGATCCT+GGG | 0.490279 | 5.2:+2377598 | None:intergenic |
CCAGAACCGTAACTGCTCCT+TGG | 0.490935 | 5.2:+2378433 | None:intergenic |
GATCTGGTGGTCCACCCCAA+TGG | 0.493018 | 5.2:-2378579 | MS.gene21710:CDS |
AGCAACTGAACAGCCATCAA+TGG | 0.493080 | 5.2:-2385211 | MS.gene21710:CDS |
GCACCTGGTTGCCCATAACT+GGG | 0.497721 | 5.2:+2377740 | None:intergenic |
GTGAACCTCGCTGACCCCAT+TGG | 0.497859 | 5.2:+2378563 | None:intergenic |
CCTTCTCCTTTACCCTCCAT+GGG | 0.498897 | 5.2:-2378265 | MS.gene21710:CDS |
CTGAGCTGGGGATGGTCCCA+TGG | 0.499599 | 5.2:+2378249 | None:intergenic |
GAGATTCCTGTTGAGGACTC+TGG | 0.499644 | 5.2:-2385261 | MS.gene21710:CDS |
CAGCCCAGTTATGGGCAACC+AGG | 0.499664 | 5.2:-2377743 | MS.gene21710:CDS |
CGCCTGGTTGAGTGGCTCTA+GGG | 0.500281 | 5.2:+2377945 | None:intergenic |
TTATGGGCAACCAGGTGCCC+AGG | 0.502933 | 5.2:-2377735 | MS.gene21710:CDS |
GCACTGGCTTGAGGGTAAGC+TGG | 0.504108 | 5.2:+2378061 | None:intergenic |
ATGGATATTGTGCAGGGCCA+CGG | 0.504139 | 5.2:+2378107 | None:intergenic |
TCCAAGTTACTGGTGATAAG+AGG | 0.505553 | 5.2:-2381032 | MS.gene21710:CDS |
TTCGCTTGAGCACTGGCTTG+AGG | 0.507075 | 5.2:+2378052 | None:intergenic |
TCGTGTGGTTGTGTCAGACT+CGG | 0.507762 | 5.2:+2385083 | None:intergenic |
GATGGTCCCATGGAGGGTAA+AGG | 0.507966 | 5.2:+2378259 | None:intergenic |
GAAGAAACAGGGCTTGTAGC+TGG | 0.509067 | 5.2:+2386497 | None:intergenic |
TAACCTGCGTTGTTAACGGC+TGG | 0.510547 | 5.2:+2377635 | None:intergenic |
CAAAGTTCCTATTAGTTCAA+CGG | 0.510784 | 5.2:+2382392 | None:intergenic |
ATAACCAGTTTGAGTTGGTG+TGG | 0.511225 | 5.2:+2377520 | None:intergenic |
GGACAGGTTTATGCCCAGCC+TGG | 0.511456 | 5.2:-2377770 | MS.gene21710:CDS |
CACCCTAGAGCCACTCAACC+AGG | 0.511574 | 5.2:-2377947 | MS.gene21710:CDS |
CGATAGCCTGAGCAGGGGAG+AGG | 0.512286 | 5.2:+2382190 | None:intergenic |
TGAAGAAGTGTCATTCTGTA+AGG | 0.512662 | 5.2:+2385125 | None:intergenic |
TTGTTCAGGGTAAGTCTGCT+GGG | 0.512955 | 5.2:+2377658 | None:intergenic |
TGTTGAGGATAATTTCCATA+AGG | 0.513807 | 5.2:+2378463 | None:intergenic |
TCTACTCCAGCACAATCATA+TGG | 0.514595 | 5.2:-2377905 | MS.gene21710:CDS |
GGCCCTGCACAATATCCATA+TGG | 0.514725 | 5.2:-2378103 | MS.gene21710:CDS |
ATGGCTCCAAGGAGCAGTTA+CGG | 0.518058 | 5.2:-2378439 | MS.gene21710:CDS |
ACTGTCTTGCCGTATGCTGC+AGG | 0.519390 | 5.2:+2377440 | None:intergenic |
TAAGGTGGGGTCAATAGAGC+TGG | 0.520444 | 5.2:+2385143 | None:intergenic |
GCCGTATGCTGCAGGAGCAC+CGG | 0.521123 | 5.2:+2377448 | None:intergenic |
GAGAAGGACCGGTACCATGT+TGG | 0.521552 | 5.2:+2378281 | None:intergenic |
TAGCCTATCAGGTCATCATC+AGG | 0.521896 | 5.2:-2378637 | MS.gene21710:CDS |
AGGCCTCGAGCTACAAGTGC+AGG | 0.522201 | 5.2:+2382210 | None:intergenic |
CGGAATCTCGCCTGGTTGAG+TGG | 0.522392 | 5.2:+2377937 | None:intergenic |
TGGGCATAAGCAGCGGGCTG+AGG | 0.523158 | 5.2:+2377413 | None:intergenic |
GCAGCTGTACCAGCAGCAGC+CGG | 0.525098 | 5.2:-2377467 | MS.gene21710:CDS |
TACTAATGGACATCAAGAAA+AGG | 0.526778 | 5.2:-2385445 | MS.gene21710:CDS |
CCTGTCCAGGTGCAGACTGC+GGG | 0.527053 | 5.2:+2377786 | None:intergenic |
AGTCACCCGCAGTCTGCACC+TGG | 0.528460 | 5.2:-2377791 | MS.gene21710:CDS |
GGGTAAGTCTGCTGGGAAGA+CGG | 0.528672 | 5.2:+2377665 | None:intergenic |
GGTTAATCATTGGGAAAGGT+GGG | 0.531773 | 5.2:-2382035 | MS.gene21710:CDS |
AATTGTAATTCATCTGAGCT+GGG | 0.532849 | 5.2:+2378236 | None:intergenic |
ACGGTTCTGGTTGGGAGCAA+AGG | 0.533493 | 5.2:-2378420 | MS.gene21710:CDS |
GGCCCCTGAAAACTCTGGTG+AGG | 0.534001 | 5.2:+2378397 | None:intergenic |
AGTTTCTACACCGTCAGTGT+TGG | 0.535493 | 5.2:+2386427 | None:intergenic |
AATACACATACCTTATTGCT+AGG | 0.536065 | 5.2:+2385048 | None:intergenic |
GATAAAAGAAGTCTTGAGCC+AGG | 0.537717 | 5.2:-2380986 | MS.gene21710:intron |
ACTGGGCTGTCCACCAGGCT+GGG | 0.539109 | 5.2:+2377757 | None:intergenic |
CCTAGCTATGGCTGAAGAAG+AGG | 0.540273 | 5.2:-2386534 | None:intergenic |
GATCCCACGATAGCCTGAGC+AGG | 0.544382 | 5.2:+2382183 | None:intergenic |
TCCTGTTGAGGACTCTGGTA+AGG | 0.544945 | 5.2:-2385256 | MS.gene21710:CDS |
TTATGGCTACCAAGCACCCC+AGG | 0.545153 | 5.2:-2377615 | MS.gene21710:CDS |
TCCCCTGCTCAGGCTATCGT+GGG | 0.545298 | 5.2:-2382186 | MS.gene21710:CDS |
GAAGTGTCATTCTGTAAGGT+GGG | 0.546448 | 5.2:+2385129 | None:intergenic |
TAACCAGTTTGAGTTGGTGT+GGG | 0.548410 | 5.2:+2377521 | None:intergenic |
CTGGGATGCTGGGCAGATGA+AGG | 0.550410 | 5.2:+2378313 | None:intergenic |
TCATCAGACACCTTATCAGC+AGG | 0.553463 | 5.2:-2378185 | MS.gene21710:CDS |
CCTCGCTGACCCCATTGGGG+TGG | 0.554723 | 5.2:+2378568 | None:intergenic |
GATGGCCCAGATGATGCATA+TGG | 0.555394 | 5.2:+2377863 | None:intergenic |
AGCTGGGGATGGTCCCATGG+AGG | 0.556204 | 5.2:+2378252 | None:intergenic |
GCAGCTCCAACTGTGCAGCC+AGG | 0.558834 | 5.2:-2377554 | MS.gene21710:CDS |
GGAGCAGTTACGGTTCTGGT+TGG | 0.559653 | 5.2:-2378429 | MS.gene21710:CDS |
CCGTCAGTGTTGGATTCGGT+GGG | 0.560541 | 5.2:+2386437 | None:intergenic |
GGTGGATATGATTATTATGG+TGG | 0.562699 | 5.2:-2378361 | MS.gene21710:CDS |
CAATCTAACCCTCAACCAGC+AGG | 0.562879 | 5.2:-2377494 | MS.gene21710:CDS |
TGGTCATAACCAGTTTGAGT+TGG | 0.565397 | 5.2:+2377515 | None:intergenic |
TCATATTGGGCATAAGCAGC+GGG | 0.565782 | 5.2:+2377407 | None:intergenic |
AAGCAGCATATCCTACATAT+GGG | 0.567067 | 5.2:-2377838 | MS.gene21710:CDS |
GAAGGACCGGTACCATGTTG+GGG | 0.570002 | 5.2:+2378283 | None:intergenic |
GCAGCGCCACTGTTGTAAGC+AGG | 0.571040 | 5.2:+2377590 | None:intergenic |
CTCCTTGGAGCCATATGTTG+AGG | 0.573692 | 5.2:+2378448 | None:intergenic |
AAGGCGATGATTCTAAAGAA+AGG | 0.574886 | 5.2:-2381059 | MS.gene21710:CDS |
AGAGCCTGCAGACCAAAACT+GGG | 0.576264 | 5.2:-2382002 | MS.gene21710:CDS |
AGATCCTCGTGGCGGACGGT+AGG | 0.576333 | 5.2:+2378597 | None:intergenic |
CATATCCATATGCATCATCT+GGG | 0.577251 | 5.2:-2377868 | MS.gene21710:CDS |
AGAAGTGTCATTCTGTAAGG+TGG | 0.579993 | 5.2:+2385128 | None:intergenic |
GTCATATTGGGCATAAGCAG+CGG | 0.580816 | 5.2:+2377406 | None:intergenic |
TGACGCCGCTGCAGTTGCTG+AGG | 0.581663 | 5.2:-2386405 | MS.gene21710:CDS |
TAATTCATCTGAGCTGGGGA+TGG | 0.582659 | 5.2:+2378241 | None:intergenic |
CTGTTGTAAGCAGGATCCTG+GGG | 0.583236 | 5.2:+2377599 | None:intergenic |
CACCAGATCCTCGTGGCGGA+CGG | 0.583322 | 5.2:+2378593 | None:intergenic |
GGATGTTGTCCTTGTGAAGG+TGG | 0.583512 | 5.2:+2377983 | None:intergenic |
CCCATGGAGGGTAAAGGAGA+AGG | 0.583548 | 5.2:+2378265 | None:intergenic |
TTTGGAAAATGCTCCTTCGG+AGG | 0.583555 | 5.2:-2385367 | MS.gene21710:CDS |
GGATAATTTCCATAAGGAGG+AGG | 0.583935 | 5.2:+2378469 | None:intergenic |
CATATGACTATCAGCACCGC+GGG | 0.584630 | 5.2:-2378522 | MS.gene21710:CDS |
CTCCATATGGATATTGTGCA+GGG | 0.585287 | 5.2:+2378101 | None:intergenic |
GGAGGGTAAAGGAGAAGGAC+CGG | 0.585487 | 5.2:+2378270 | None:intergenic |
GTTGTGTCAGACTCGGATAT+AGG | 0.586274 | 5.2:+2385090 | None:intergenic |
CGGTGCTGATAGTCATATGA+TGG | 0.586322 | 5.2:+2378526 | None:intergenic |
TGACTGTAACCATCTGCAGC+TGG | 0.588200 | 5.2:+2377809 | None:intergenic |
TGTCAAAGAGATTCCTGTTG+AGG | 0.588403 | 5.2:-2385268 | MS.gene21710:CDS |
CCTTGTCCATAACCTTGTTG+AGG | 0.589130 | 5.2:+2378154 | None:intergenic |
GCTTGAGGGTAAGCTGGCTG+AGG | 0.589420 | 5.2:+2378067 | None:intergenic |
GGCTTGCCATACTGCTGGGG+AGG | 0.589568 | 5.2:+2378022 | None:intergenic |
GCTGGGGATGGTCCCATGGA+GGG | 0.591933 | 5.2:+2378253 | None:intergenic |
GCTGGTGCAGACCCATATGT+AGG | 0.592494 | 5.2:+2377827 | None:intergenic |
ATCCCACGATAGCCTGAGCA+GGG | 0.592936 | 5.2:+2382184 | None:intergenic |
ATCATATCCACCATTATGTG+AGG | 0.594833 | 5.2:+2378372 | None:intergenic |
AATCTCTTTGACATCCTCAA+CGG | 0.595049 | 5.2:+2385278 | None:intergenic |
ACCTGTCCAGGTGCAGACTG+CGG | 0.595220 | 5.2:+2377785 | None:intergenic |
TACAATTATGGACAGCCTCA+GGG | 0.595891 | 5.2:-2378220 | MS.gene21710:CDS |
GATACAAGTTCCAAATGAGA+AGG | 0.597304 | 5.2:-2382148 | MS.gene21710:intron |
TCGCCTTCGGGAAGATGTTG+AGG | 0.598864 | 5.2:+2381075 | None:intergenic |
GTAGGATATGCTGCTTGTGA+TGG | 0.599015 | 5.2:+2377845 | None:intergenic |
ACGGGCCTTGTTGAAGAGTG+AGG | 0.603130 | 5.2:+2382411 | None:intergenic |
ATCCTCAACATATGGCTCCA+AGG | 0.603445 | 5.2:-2378450 | MS.gene21710:CDS |
GGGTCTGCACCAGCTGCAGA+TGG | 0.603725 | 5.2:-2377818 | MS.gene21710:CDS |
TTGCACCCGAATTATACTGC+AGG | 0.604515 | 5.2:+2382466 | None:intergenic |
CTCTGGTAAGGAAAATGACA+AGG | 0.605178 | 5.2:-2385244 | MS.gene21710:CDS |
TGAGGATAATTTCCATAAGG+AGG | 0.609076 | 5.2:+2378466 | None:intergenic |
CCTCAACAAGGTTATGGACA+AGG | 0.609190 | 5.2:-2378154 | MS.gene21710:CDS |
CTGGTTGAGTGGCTCTAGGG+TGG | 0.609688 | 5.2:+2377948 | None:intergenic |
CCAGGCGAGATTCCGTATCA+GGG | 0.609811 | 5.2:-2377929 | MS.gene21710:CDS |
TGGTTATCGTCGTCAAGACG+AGG | 0.613071 | 5.2:+2386365 | None:intergenic |
CAGGTTTATGCCCAGCCTGG+TGG | 0.613647 | 5.2:-2377767 | MS.gene21710:CDS |
AACTTGCGCATAACTAGCTG+TGG | 0.614751 | 5.2:+2377712 | None:intergenic |
GCATATGATTGATTATGAGA+AGG | 0.617478 | 5.2:+2378493 | None:intergenic |
CGTCCGCCACGAGGATCTGG+TGG | 0.619194 | 5.2:-2378592 | MS.gene21710:CDS |
CTGATCCTCACTCTTCAACA+AGG | 0.619869 | 5.2:-2382416 | MS.gene21710:CDS |
GTCGGGTTAATCATTGGGAA+AGG | 0.620723 | 5.2:-2382039 | MS.gene21710:CDS |
ACATCTTGAACTTCCTCCGA+AGG | 0.620832 | 5.2:+2385354 | None:intergenic |
TCGAGGAGCACCATAAACTT+GGG | 0.623385 | 5.2:+2377379 | None:intergenic |
CAGACACCTTATCAGCAGGC+AGG | 0.625185 | 5.2:-2378181 | MS.gene21710:CDS |
ACAGCTAGTTATGCGCAAGT+TGG | 0.627057 | 5.2:-2377710 | MS.gene21710:CDS |
GGAATCTCATTGGCATCAGT+AGG | 0.627548 | 5.2:+2385300 | None:intergenic |
GTTAATCATTGGGAAAGGTG+GGG | 0.628317 | 5.2:-2382034 | MS.gene21710:CDS |
GGTGTGGGTTGAACATAACC+TGG | 0.628424 | 5.2:+2377536 | None:intergenic |
TGTGGATGTTGTCCTTGTGA+AGG | 0.628816 | 5.2:+2377980 | None:intergenic |
GCTGGAGTAGAACCCTGATA+CGG | 0.630359 | 5.2:+2377917 | None:intergenic |
TCAAGAAAAGGAGGTTGCTG+AGG | 0.632026 | 5.2:-2385433 | MS.gene21710:CDS |
ACTGTGCCATATGATTGTGC+TGG | 0.633161 | 5.2:+2377899 | None:intergenic |
AGGGTGGCCCCTGAAAACTC+TGG | 0.635256 | 5.2:+2378392 | None:intergenic |
TAATGGACATCAAGAAAAGG+AGG | 0.635993 | 5.2:-2385442 | MS.gene21710:CDS |
GGTGGCTTGCCATACTGCTG+GGG | 0.637360 | 5.2:+2378019 | None:intergenic |
CAGGATCCTGCTTACAACAG+TGG | 0.637586 | 5.2:-2377596 | MS.gene21710:CDS |
ATCGTCCTCAGCAACTGCAG+CGG | 0.638462 | 5.2:+2386400 | None:intergenic |
TCATATCCACCATTATGTGA+GGG | 0.639095 | 5.2:+2378373 | None:intergenic |
ATTCCACAGGCTGATGCTGG+AGG | 0.639608 | 5.2:-2382237 | MS.gene21710:intron |
GATTATTATGGTGGACAAAG+CGG | 0.641921 | 5.2:-2378352 | MS.gene21710:CDS |
AAGGACCGGTACCATGTTGG+GGG | 0.643168 | 5.2:+2378284 | None:intergenic |
GATAGTCATATGATGGTGGT+TGG | 0.644576 | 5.2:+2378533 | None:intergenic |
TCTCCTGCACTTGTAGCTCG+AGG | 0.645902 | 5.2:-2382213 | MS.gene21710:CDS |
TATGGTGTGCCACCTTCACA+AGG | 0.647766 | 5.2:-2377992 | MS.gene21710:CDS |
AACTTTGGAAAGCATAGACA+AGG | 0.648448 | 5.2:-2382376 | MS.gene21710:CDS |
GGGCCACCCTCACATAATGG+TGG | 0.651219 | 5.2:-2378379 | MS.gene21710:CDS |
CAGGCAGGACATCCTCAACA+AGG | 0.654329 | 5.2:-2378166 | MS.gene21710:CDS |
ATTGTAATTCATCTGAGCTG+GGG | 0.655860 | 5.2:+2378237 | None:intergenic |
TATCCACCATTATGTGAGGG+TGG | 0.659251 | 5.2:+2378376 | None:intergenic |
CAACCAGCCGTTAACAACGC+AGG | 0.660453 | 5.2:-2377638 | MS.gene21710:CDS |
ATACCTCAACATCTTCCCGA+AGG | 0.661549 | 5.2:-2381078 | MS.gene21710:CDS |
CAGGCCTACCGTCCGCCACG+AGG | 0.664533 | 5.2:-2378601 | MS.gene21710:CDS |
TGCTGATAGTCATATGATGG+TGG | 0.665307 | 5.2:+2378529 | None:intergenic |
CTAGGGTGGCCATAAGACTG+TGG | 0.667005 | 5.2:+2377962 | None:intergenic |
CCACCCCAATGGGGTCAGCG+AGG | 0.668636 | 5.2:-2378568 | MS.gene21710:CDS |
GGGTATGATCCATAACCAGT+AGG | 0.670355 | 5.2:+2377686 | None:intergenic |
TCCCACGATAGCCTGAGCAG+GGG | 0.672197 | 5.2:+2382185 | None:intergenic |
CCTGCACAATATCCATATGG+AGG | 0.672775 | 5.2:-2378100 | MS.gene21710:CDS |
TGCCAATGAGATTCCCGTTG+AGG | 0.673173 | 5.2:-2385292 | MS.gene21710:CDS |
GCTTACAATCAGAAGAAACA+GGG | 0.675017 | 5.2:+2386486 | None:intergenic |
CCCACCGAATCCAACACTGA+CGG | 0.677283 | 5.2:-2386437 | MS.gene21710:CDS |
TGAGGCAGAAACAGAAACAG+AGG | 0.677467 | 5.2:-2385415 | MS.gene21710:CDS |
CCTATCAGGTCATCATCAGG+TGG | 0.685141 | 5.2:-2378634 | MS.gene21710:CDS |
AAGTGTCATTCTGTAAGGTG+GGG | 0.686055 | 5.2:+2385130 | None:intergenic |
GACGATAACCAGAATGACCT+AGG | 0.692835 | 5.2:-2386353 | MS.gene21710:intron |
GAACCTCGCTGACCCCATTG+GGG | 0.701978 | 5.2:+2378565 | None:intergenic |
TATGAGAAGGATATGGCCCG+CGG | 0.706134 | 5.2:+2378506 | None:intergenic |
GAATCGAAGTACGAAAACCG+TGG | 0.723766 | 5.2:-2378124 | MS.gene21710:CDS |
GAAGGTGGCACACCATACAA+CGG | 0.724316 | 5.2:+2377998 | None:intergenic |
TCTGGTGGTCCACCCCAATG+GGG | 0.728168 | 5.2:-2378577 | MS.gene21710:CDS |
GGTGGACCACCAGATCCTCG+TGG | 0.736923 | 5.2:+2378586 | None:intergenic |
AATGAATGCTGTGATTGCAG+AGG | 0.739384 | 5.2:-2382343 | MS.gene21710:intron |
TGACCATAATCCTGACCCTG+AGG | 0.742155 | 5.2:+2378205 | None:intergenic |
GGTGGCACACCATACAACGG+TGG | 0.744350 | 5.2:+2378001 | None:intergenic |
TCATATGACTATCAGCACCG+CGG | 0.747919 | 5.2:-2378523 | MS.gene21710:CDS |
GAGCCTGCAGACCAAAACTG+GGG | 0.750434 | 5.2:-2382001 | MS.gene21710:CDS |
GGACCACCAGATCCTCGTGG+CGG | 0.754108 | 5.2:+2378589 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.2 | gene | 2377376 | 2386549 | 2377376 | ID=MS.gene21710 |
chr5.2 | mRNA | 2377376 | 2386549 | 2377376 | ID=MS.gene21710.t1;Parent=MS.gene21710 |
chr5.2 | exon | 2386354 | 2386549 | 2386354 | ID=MS.gene21710.t1.exon1;Parent=MS.gene21710.t1 |
chr5.2 | CDS | 2386354 | 2386549 | 2386354 | ID=cds.MS.gene21710.t1;Parent=MS.gene21710.t1 |
chr5.2 | exon | 2385059 | 2385471 | 2385059 | ID=MS.gene21710.t1.exon2;Parent=MS.gene21710.t1 |
chr5.2 | CDS | 2385059 | 2385471 | 2385059 | ID=cds.MS.gene21710.t1;Parent=MS.gene21710.t1 |
chr5.2 | exon | 2382344 | 2382529 | 2382344 | ID=MS.gene21710.t1.exon3;Parent=MS.gene21710.t1 |
chr5.2 | CDS | 2382344 | 2382529 | 2382344 | ID=cds.MS.gene21710.t1;Parent=MS.gene21710.t1 |
chr5.2 | exon | 2382149 | 2382250 | 2382149 | ID=MS.gene21710.t1.exon4;Parent=MS.gene21710.t1 |
chr5.2 | CDS | 2382149 | 2382250 | 2382149 | ID=cds.MS.gene21710.t1;Parent=MS.gene21710.t1 |
chr5.2 | exon | 2381990 | 2382061 | 2381990 | ID=MS.gene21710.t1.exon5;Parent=MS.gene21710.t1 |
chr5.2 | CDS | 2381990 | 2382061 | 2381990 | ID=cds.MS.gene21710.t1;Parent=MS.gene21710.t1 |
chr5.2 | exon | 2380987 | 2381103 | 2380987 | ID=MS.gene21710.t1.exon6;Parent=MS.gene21710.t1 |
chr5.2 | CDS | 2380987 | 2381103 | 2380987 | ID=cds.MS.gene21710.t1;Parent=MS.gene21710.t1 |
chr5.2 | exon | 2377376 | 2378656 | 2377376 | ID=MS.gene21710.t1.exon7;Parent=MS.gene21710.t1 |
chr5.2 | CDS | 2377376 | 2378656 | 2377376 | ID=cds.MS.gene21710.t1;Parent=MS.gene21710.t1 |
Gene Sequence |
Protein sequence |